AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41299

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41299.t1 MTR_1g031080 98.780 246 3 0 50 295 47 292 0.0 506
MS.gene41299.t1 MTR_1g031060 82.400 250 44 0 46 295 113 362 5.39e-142 404
MS.gene41299.t1 MTR_1g048320 75.697 251 57 2 46 295 97 344 3.20e-130 374
MS.gene41299.t1 MTR_2g087610 61.441 236 87 1 64 295 133 368 4.65e-100 298
MS.gene41299.t1 MTR_3g106930 48.913 276 113 3 34 295 116 377 2.80e-81 250
MS.gene41299.t1 MTR_3g108740 35.968 253 114 9 61 285 139 371 1.79e-34 129
MS.gene41299.t1 MTR_1g009960 36.441 236 123 10 39 269 138 351 3.32e-34 128
MS.gene41299.t1 MTR_4g127550 33.202 253 124 7 61 287 154 387 3.61e-34 128
MS.gene41299.t1 MTR_1g009960 34.545 275 130 12 39 285 138 390 8.12e-34 127
MS.gene41299.t1 MTR_1g016880 33.061 245 135 6 57 293 151 374 3.93e-32 122
MS.gene41299.t1 MTR_1g110290 34.100 261 142 8 41 292 152 391 4.15e-32 123
MS.gene41299.t1 MTR_2g037600 32.653 245 121 5 61 279 152 378 5.70e-32 122
MS.gene41299.t1 MTR_2g037620 32.411 253 126 6 61 287 144 377 5.69e-31 119
MS.gene41299.t1 MTR_2g005350 34.008 247 133 6 55 292 211 436 1.06e-30 119
MS.gene41299.t1 MTR_5g055480 34.340 265 139 9 39 292 148 388 1.20e-30 119
MS.gene41299.t1 MTR_8g015500 31.967 244 138 6 57 292 188 411 2.09e-30 118
MS.gene41299.t1 MTR_5g006930 31.179 263 150 8 40 292 143 384 4.09e-27 109
MS.gene41299.t1 MTR_5g006920 30.824 279 162 9 24 292 162 419 5.44e-27 109
MS.gene41299.t1 MTR_6g083830 29.924 264 152 8 40 292 176 417 3.82e-25 104
MS.gene41299.t1 MTR_3g104840 30.153 262 136 7 40 292 168 391 6.18e-24 100
MS.gene41299.t1 MTR_2g024120 31.022 274 125 10 61 292 113 364 1.31e-22 96.7
MS.gene41299.t1 MTR_8g094180 28.731 268 113 10 74 288 120 362 2.50e-19 87.4
MS.gene41299.t1 MTR_8g094180 31.050 219 96 8 74 262 120 313 7.58e-19 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41299.t1 AT3G52060 57.708 253 91 3 46 295 107 346 3.77e-104 308
MS.gene41299.t1 AT5G22070 57.692 260 99 4 46 295 104 362 2.43e-103 306
MS.gene41299.t1 AT5G25330 48.855 262 107 5 46 295 116 362 3.89e-73 229
MS.gene41299.t1 AT4G32290 46.595 279 117 3 35 295 115 379 7.10e-71 224
MS.gene41299.t1 AT4G31350 36.538 260 118 8 53 285 127 366 7.29e-39 140
MS.gene41299.t1 AT4G31350 36.538 260 118 8 53 285 127 366 7.29e-39 140
MS.gene41299.t1 AT4G31350 36.538 260 118 8 53 285 127 366 7.29e-39 140
MS.gene41299.t1 AT4G31350 37.712 236 100 8 77 285 146 361 6.59e-38 138
MS.gene41299.t1 AT4G30060 34.252 254 121 7 61 287 155 389 1.61e-35 132
MS.gene41299.t1 AT4G30060 34.252 254 121 7 61 287 155 389 1.61e-35 132
MS.gene41299.t1 AT5G25970 31.985 272 156 7 29 292 135 385 4.53e-35 130
MS.gene41299.t1 AT5G25970 31.985 272 156 7 29 292 135 385 4.53e-35 130
MS.gene41299.t1 AT5G25970 31.985 272 156 7 29 292 135 385 4.53e-35 130
MS.gene41299.t1 AT2G19160 33.566 286 141 10 30 287 122 386 7.46e-34 127
MS.gene41299.t1 AT2G19160 33.566 286 141 10 30 287 122 386 7.46e-34 127
MS.gene41299.t1 AT5G11730 32.824 262 146 7 40 292 144 384 1.51e-33 126
MS.gene41299.t1 AT1G51770 32.443 262 147 7 40 292 150 390 8.36e-33 125
MS.gene41299.t1 AT1G10280 34.818 247 131 8 55 292 185 410 3.19e-31 120
MS.gene41299.t1 AT4G25870 32.031 256 125 8 61 287 145 380 1.66e-30 118
MS.gene41299.t1 AT3G21310 33.588 262 144 8 40 292 141 381 2.84e-30 117
MS.gene41299.t1 AT3G21310 33.588 262 144 8 40 292 141 381 2.84e-30 117
MS.gene41299.t1 AT5G57270 31.250 256 127 7 61 287 144 379 1.03e-29 116
MS.gene41299.t1 AT5G57270 31.250 256 127 7 61 287 144 379 1.03e-29 116
MS.gene41299.t1 AT5G57270 31.250 256 127 7 61 287 144 379 1.03e-29 116
MS.gene41299.t1 AT5G57270 31.250 256 127 7 61 287 144 379 1.03e-29 116
MS.gene41299.t1 AT5G57270 31.250 256 127 7 61 287 144 379 1.03e-29 116
MS.gene41299.t1 AT5G16170 31.136 273 149 7 36 292 158 407 3.90e-29 115
MS.gene41299.t1 AT1G10880 31.343 268 154 8 30 288 134 380 5.61e-27 108
MS.gene41299.t1 AT1G68390 29.167 264 155 7 40 292 164 406 1.73e-23 99.4
MS.gene41299.t1 AT1G68380 32.661 248 128 8 59 293 170 391 3.56e-23 98.6
MS.gene41299.t1 AT5G14550 32.110 218 106 8 74 274 129 321 1.23e-22 96.3
MS.gene41299.t1 AT1G73810 32.677 254 136 9 49 292 188 416 7.85e-22 95.1
MS.gene41299.t1 AT1G51770 29.771 262 127 8 40 292 150 363 3.10e-21 92.8
MS.gene41299.t1 AT5G14550 28.897 263 113 12 74 287 129 366 1.81e-19 87.8
MS.gene41299.t1 AT5G14550 28.462 260 113 11 74 285 129 363 3.14e-19 87.0
MS.gene41299.t1 AT1G62305 29.851 268 122 10 61 285 120 364 1.58e-18 85.1
MS.gene41299.t1 AT1G11940 30.112 269 121 13 61 285 125 370 1.33e-17 82.4
MS.gene41299.t1 AT1G62305 32.768 177 82 6 61 221 120 275 6.58e-14 71.2
MS.gene41299.t1 AT5G14550 28.514 249 105 13 74 287 129 339 1.09e-12 67.8

Find 72 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCAGGTTGTTAGATTTC+TGG 0.114193 1.2:-31597916 MS.gene41299:CDS
TCGGATTCCTTGTGTAAATT+TGG 0.194070 1.2:-31596833 MS.gene41299:CDS
CTGTTTACTGCCTGCTGTTC+AGG 0.228346 1.2:-31597872 MS.gene41299:CDS
CTGTTTACTGCCTGCTGTTC+AGG 0.228346 1.2:-31597931 MS.gene41299:CDS
GTCGGAAAATAATGCTCTTC+TGG 0.272832 1.2:+31596799 None:intergenic
TTACACTGACGAGAGTTAAT+TGG 0.281293 1.2:-31596738 MS.gene41299:CDS
GGAGTGTCTTGTTCCGTTGA+TGG 0.330076 1.2:-31596593 MS.gene41299:CDS
ATAAGCTCTGGAAGAAGTTT+CGG 0.354353 1.2:-31596852 MS.gene41299:CDS
TGGAAGAGATGAAACGGTTA+TGG 0.369541 1.2:+31597244 None:intergenic
TGCTCCTTTCTGGTGGCAGC+AGG 0.376932 1.2:-31597822 MS.gene41299:intron
GAATTTCCTTGCAAATAGAT+AGG 0.409002 1.2:+31596621 None:intergenic
TGGAGAGAACGTTATGTTGC+CGG 0.434704 1.2:-31596956 MS.gene41299:CDS
GTTGCCGGAGGTTCCGTTTG+AGG 0.437713 1.2:-31596941 MS.gene41299:CDS
GAGTTAATTGGACTGGTTGT+TGG 0.442362 1.2:-31596726 MS.gene41299:CDS
AAAGCAAAGTATTGGTTAAG+TGG 0.453008 1.2:+31597147 None:intergenic
AGTTAATTGGACTGGTTGTT+GGG 0.463114 1.2:-31596725 MS.gene41299:CDS
TCAGATCCTCCATTGACAAA+AGG 0.467314 1.2:+31596776 None:intergenic
GAGAGAATCTCAATATAGCT+AGG 0.471455 1.2:+31597015 None:intergenic
GAGAAACTAAAGCAAAGTAT+TGG 0.471858 1.2:+31597139 None:intergenic
ACCACCTCCGTCGTATCCCC+TGG 0.477582 1.2:-31597276 MS.gene41299:CDS
CAGATCCTCCATTGACAAAA+GGG 0.483609 1.2:+31596777 None:intergenic
TGGTTAGAGATTATAAGCTC+TGG 0.488573 1.2:-31596864 MS.gene41299:CDS
TTGTTAGATGAGGTTGCAGC+AGG 0.488716 1.2:-31597849 MS.gene41299:CDS
TGAAGCACGTTGTGTTGGTT+TGG 0.493511 1.2:+31597224 None:intergenic
AGCTCTGGTGACACTTCCTC+TGG 0.495057 1.2:+31596679 None:intergenic
CTCAGCTGTCGAATTAGCTC+TGG 0.496007 1.2:+31596664 None:intergenic
CGGTTATGGAAGACACCGCC+AGG 0.500731 1.2:+31597258 None:intergenic
GGGATACGACGGAGGTGGTA+GGG 0.506101 1.2:+31597280 None:intergenic
GGGGATACGACGGAGGTGGT+AGG 0.514110 1.2:+31597279 None:intergenic
TTATAACGCTCGTAGAGATT+CGG 0.519118 1.2:+31596985 None:intergenic
AATCTAACAACCTGAACAGC+AGG 0.523574 1.2:+31597921 None:intergenic
TTGTCAATGGAGGATCTGAA+TGG 0.532445 1.2:-31596772 MS.gene41299:CDS
GTTATTCCTATCTATTTGCA+AGG 0.534133 1.2:-31596627 MS.gene41299:CDS
CAACATAACGTTCTCTCCAC+GGG 0.537592 1.2:+31596960 None:intergenic
CATCTAACAACCTGAACAGC+AGG 0.539270 1.2:+31597862 None:intergenic
AAATCCTCAAACGGAACCTC+CGG 0.539492 1.2:+31596937 None:intergenic
AACAGCAGGCAGTAAACAGC+AGG 0.547166 1.2:+31597876 None:intergenic
AACAGCAGGCAGTAAACAGC+AGG 0.547166 1.2:+31597935 None:intergenic
GCTGTTCAGGTTGTTAGATG+AGG 0.554473 1.2:-31597859 MS.gene41299:CDS
CTGACGAGAGTTAATTGGAC+TGG 0.559122 1.2:-31596733 MS.gene41299:CDS
TGTCAATGGAGGATCTGAAT+GGG 0.561186 1.2:-31596771 MS.gene41299:CDS
CACCGAGCAAGCTTCAATCC+CGG 0.562100 1.2:+31596548 None:intergenic
GAGGATCTGAATGGGTGTAC+TGG 0.569583 1.2:-31596763 MS.gene41299:CDS
AATTGGACTGGTTGTTGGGA+TGG 0.570319 1.2:-31596721 MS.gene41299:CDS
CCAACCCGAAAATCCTCAAA+CGG 0.573571 1.2:+31596928 None:intergenic
CTAACCTGCTGCCACCAGAA+AGG 0.582150 1.2:+31597818 None:intergenic
GACACCGCCAGGGGATACGA+CGG 0.582306 1.2:+31597269 None:intergenic
GATGGTGAAGCACGTTGTGT+TGG 0.582509 1.2:+31597219 None:intergenic
GCAACATAACGTTCTCTCCA+CGG 0.586970 1.2:+31596959 None:intergenic
TCCTCCATTGACAAAAGGGT+CGG 0.587143 1.2:+31596781 None:intergenic
TTGGTTTGGAAGAGATGAAA+CGG 0.597722 1.2:+31597238 None:intergenic
TGCTATGAGACGTCGTGCAG+CGG 0.599661 1.2:+31597188 None:intergenic
ATTTGCAAGGAAATTCTCGC+CGG 0.599665 1.2:-31596614 MS.gene41299:CDS
AGAGAATCTCAATATAGCTA+GGG 0.599756 1.2:+31597016 None:intergenic
CAGGAAGCATGCAAAAGTTG+TGG 0.601537 1.2:-31596884 MS.gene41299:CDS
TCCTCTGGAGTATAAAGATG+AGG 0.605118 1.2:+31596694 None:intergenic
CAGAGCTAATTCGACAGCTG+AGG 0.605650 1.2:-31596663 MS.gene41299:CDS
GCCAGGGGATACGACGGAGG+TGG 0.608010 1.2:+31597275 None:intergenic
AGAGCTAATTCGACAGCTGA+GGG 0.610517 1.2:-31596662 MS.gene41299:CDS
TCCTCATCTTTATACTCCAG+AGG 0.627703 1.2:-31596695 MS.gene41299:CDS
CAAGAATCCAAATTTACACA+AGG 0.644692 1.2:+31596826 None:intergenic
CTATATTGAGATTCTCTCTG+AGG 0.647208 1.2:-31597010 MS.gene41299:CDS
TCATCAGCTATATCCATCAA+CGG 0.653284 1.2:+31596580 None:intergenic
TACGAGCGTTATAACGCCCG+TGG 0.653699 1.2:-31596976 MS.gene41299:CDS
ATCAACGGAACAAGACACTC+CGG 0.659475 1.2:+31596595 None:intergenic
AGAGAACGTTATGTTGCCGG+AGG 0.659698 1.2:-31596953 MS.gene41299:CDS
GGTTATGGAAGACACCGCCA+GGG 0.669186 1.2:+31597259 None:intergenic
ACGAATCGAAACGACAAGAG+CGG 0.691362 1.2:+31597105 None:intergenic
ACCTCCGTCGTATCCCCTGG+CGG 0.701974 1.2:-31597273 MS.gene41299:CDS
ACCGCCAGGGGATACGACGG+AGG 0.706931 1.2:+31597272 None:intergenic
CGTGCAGCGGAGATGAGTGA+TGG 0.712720 1.2:+31597201 None:intergenic
GTTATGGAAGACACCGCCAG+GGG 0.770600 1.2:+31597260 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAGATAG+CGG - chr1.2:31596977-31596996 MS.gene41299:CDS 10.0%
!!! ACATTAACTGATTTTTAAAA+AGG + chr1.2:31597436-31597455 None:intergenic 15.0%
! TGAAATCTAGTGATTTGAAT+TGG - chr1.2:31596770-31596789 MS.gene41299:CDS 25.0%
AGAGAATCTCAATATAGCTA+GGG + chr1.2:31597493-31597512 None:intergenic 30.0%
CAAAAACATGGAAAAGTTGA+AGG + chr1.2:31596863-31596882 None:intergenic 30.0%
CAAGAATCCAAATTTACACA+AGG + chr1.2:31597683-31597702 None:intergenic 30.0%
GAATTTCCTTGCAAATAGAT+AGG + chr1.2:31597888-31597907 None:intergenic 30.0%
GAGAAACTAAAGCAAAGTAT+TGG + chr1.2:31597370-31597389 None:intergenic 30.0%
GGATGTATATATTGAAGAGA+TGG + chr1.2:31597199-31597218 None:intergenic 30.0%
GTTATTCCTATCTATTTGCA+AGG - chr1.2:31597879-31597898 MS.gene41299:CDS 30.0%
TGATTTGAATTGGATTTCAG+AGG - chr1.2:31596780-31596799 MS.gene41299:CDS 30.0%
!! AAAGCAAAGTATTGGTTAAG+TGG + chr1.2:31597362-31597381 None:intergenic 30.0%
!! AACTTTTCCATGTTTTTGTG+TGG - chr1.2:31596865-31596884 MS.gene41299:CDS 30.0%
CCAGACAAAAAAATATGGGA+TGG + chr1.2:31597003-31597022 None:intergenic 35.0%
CTATATTGAGATTCTCTCTG+AGG - chr1.2:31597496-31597515 MS.gene41299:intron 35.0%
GAGAGAATCTCAATATAGCT+AGG + chr1.2:31597494-31597513 None:intergenic 35.0%
GCATAACATTTCTGTTAGCT+TGG - chr1.2:31596802-31596821 MS.gene41299:CDS 35.0%
GGAGCCAGACAAAAAAATAT+GGG + chr1.2:31597007-31597026 None:intergenic 35.0%
GTAACATCCACACAAAAACA+TGG + chr1.2:31596875-31596894 None:intergenic 35.0%
TCATCAGCTATATCCATCAA+CGG + chr1.2:31597929-31597948 None:intergenic 35.0%
TCGGATTCCTTGTGTAAATT+TGG - chr1.2:31597673-31597692 MS.gene41299:intron 35.0%
TGGTTAGAGATTATAAGCTC+TGG - chr1.2:31597642-31597661 MS.gene41299:intron 35.0%
TTACACTGACGAGAGTTAAT+TGG - chr1.2:31597768-31597787 MS.gene41299:intron 35.0%
TTATAACGCTCGTAGAGATT+CGG + chr1.2:31597524-31597543 None:intergenic 35.0%
TTATGGGAAAAATTCTTCGC+CGG - chr1.2:31597167-31597186 MS.gene41299:CDS 35.0%
! ATTGAAGAGATGGTTGTTTC+CGG + chr1.2:31597189-31597208 None:intergenic 35.0%
! GCGAAGAATTTTTCCCATAA+AGG + chr1.2:31597167-31597186 None:intergenic 35.0%
! TTTAGGTTTAGGGTTTGTGA+GGG + chr1.2:31597102-31597121 None:intergenic 35.0%
!! AGTTAATTGGACTGGTTGTT+GGG - chr1.2:31597781-31597800 MS.gene41299:intron 35.0%
!! ATAAGCTCTGGAAGAAGTTT+CGG - chr1.2:31597654-31597673 MS.gene41299:intron 35.0%
!! CTTGGTTTTTGCTTTCAGTT+GGG - chr1.2:31596820-31596839 MS.gene41299:CDS 35.0%
!! TGTTCAGGTTGTTAGATTTC+TGG - chr1.2:31596590-31596609 MS.gene41299:CDS 35.0%
!! TTGGTTTGGAAGAGATGAAA+CGG + chr1.2:31597271-31597290 None:intergenic 35.0%
!!! CCATCCCATATTTTTTTGTC+TGG - chr1.2:31597000-31597019 MS.gene41299:CDS 35.0%
!!! CGCAGTTTTTTATCTTGAAC+AGG - chr1.2:31597603-31597622 MS.gene41299:intron 35.0%
!!! TAGCTGATGATGTCATTTTC+CGG - chr1.2:31597939-31597958 MS.gene41299:CDS 35.0%
!!! TTTTAGGTTTAGGGTTTGTG+AGG + chr1.2:31597103-31597122 None:intergenic 35.0%
AATCTAACAACCTGAACAGC+AGG + chr1.2:31596588-31596607 None:intergenic 40.0%
ATTTGCAAGGAAATTCTCGC+CGG - chr1.2:31597892-31597911 MS.gene41299:CDS 40.0%
CAAATCATTCCAGTTGTGCA+GGG - chr1.2:31596723-31596742 MS.gene41299:CDS 40.0%
CAGATCCTCCATTGACAAAA+GGG + chr1.2:31597732-31597751 None:intergenic 40.0%
CGGAGCCAGACAAAAAAATA+TGG + chr1.2:31597008-31597027 None:intergenic 40.0%
GTCGGAAAATAATGCTCTTC+TGG + chr1.2:31597710-31597729 None:intergenic 40.0%
TAAAGGAGCAAAAGTGAGGT+TGG + chr1.2:31597150-31597169 None:intergenic 40.0%
TCAGATCCTCCATTGACAAA+AGG + chr1.2:31597733-31597752 None:intergenic 40.0%
TCCTCATCTTTATACTCCAG+AGG - chr1.2:31597811-31597830 MS.gene41299:intron 40.0%
TGGAAGAGATGAAACGGTTA+TGG + chr1.2:31597265-31597284 None:intergenic 40.0%
TGTCAATGGAGGATCTGAAT+GGG - chr1.2:31597735-31597754 MS.gene41299:intron 40.0%
TGTGTGGATGTTACGCTTAT+AGG - chr1.2:31596881-31596900 MS.gene41299:CDS 40.0%
TTGTCAATGGAGGATCTGAA+TGG - chr1.2:31597734-31597753 MS.gene41299:intron 40.0%
! AGGTTCCGTTTGAGGATTTT+CGG - chr1.2:31597573-31597592 MS.gene41299:intron 40.0%
! AGTTGGGACTTTTGTGGTTT+GGG - chr1.2:31596836-31596855 MS.gene41299:CDS 40.0%
! TTTTCCGACCCTTTTGTCAA+TGG - chr1.2:31597721-31597740 MS.gene41299:intron 40.0%
!! ACCTCACTTTTGCTCCTTTA+TGG - chr1.2:31597150-31597169 MS.gene41299:CDS 40.0%
!! CCTCACTTTTGCTCCTTTAT+GGG - chr1.2:31597151-31597170 MS.gene41299:CDS 40.0%
!! GAGTTAATTGGACTGGTTGT+TGG - chr1.2:31597780-31597799 MS.gene41299:intron 40.0%
!! GCTTGGTTTTTGCTTTCAGT+TGG - chr1.2:31596819-31596838 MS.gene41299:CDS 40.0%
!! TCCTCTGGAGTATAAAGATG+AGG + chr1.2:31597815-31597834 None:intergenic 40.0%
!!! AGCTGATGATGTCATTTTCC+GGG - chr1.2:31597940-31597959 MS.gene41299:CDS 40.0%
!!! AGGAAGGCGATTTTAGGTTT+AGG + chr1.2:31597113-31597132 None:intergenic 40.0%
!!! GGAAGGCGATTTTAGGTTTA+GGG + chr1.2:31597112-31597131 None:intergenic 40.0%
AAATCCTCAAACGGAACCTC+CGG + chr1.2:31597572-31597591 None:intergenic 45.0%
ACGAATCGAAACGACAAGAG+CGG + chr1.2:31597404-31597423 None:intergenic 45.0%
AGAGCTAATTCGACAGCTGA+GGG - chr1.2:31597844-31597863 MS.gene41299:CDS 45.0%
ATCAACGGAACAAGACACTC+CGG + chr1.2:31597914-31597933 None:intergenic 45.0%
CAACATAACGTTCTCTCCAC+GGG + chr1.2:31597549-31597568 None:intergenic 45.0%
CATCTAACAACCTGAACAGC+AGG + chr1.2:31596647-31596666 None:intergenic 45.0%
CCAACCCGAAAATCCTCAAA+CGG + chr1.2:31597581-31597600 None:intergenic 45.0%
CCCATAAAGGAGCAAAAGTG+AGG + chr1.2:31597154-31597173 None:intergenic 45.0%
CTGACGAGAGTTAATTGGAC+TGG - chr1.2:31597773-31597792 MS.gene41299:intron 45.0%
GCAAATCATTCCAGTTGTGC+AGG - chr1.2:31596722-31596741 MS.gene41299:CDS 45.0%
GCAACATAACGTTCTCTCCA+CGG + chr1.2:31597550-31597569 None:intergenic 45.0%
GTTTGTGAGGGTGGATAAGT+GGG + chr1.2:31597090-31597109 None:intergenic 45.0%
TCCTCCATTGACAAAAGGGT+CGG + chr1.2:31597728-31597747 None:intergenic 45.0%
TGGAGAGAACGTTATGTTGC+CGG - chr1.2:31597550-31597569 MS.gene41299:intron 45.0%
TTGTTAGATGAGGTTGCAGC+AGG - chr1.2:31596657-31596676 MS.gene41299:CDS 45.0%
! AGCAGGTTTTTGCTCCTTTC+TGG - chr1.2:31596674-31596693 MS.gene41299:CDS 45.0%
! AGGAAGAGGAAGGCGATTTT+AGG + chr1.2:31597119-31597138 None:intergenic 45.0%
! AGGTTTTTGCTCCTTTCTGG+TGG - chr1.2:31596677-31596696 MS.gene41299:CDS 45.0%
! CAGGAAGCATGCAAAAGTTG+TGG - chr1.2:31597622-31597641 MS.gene41299:intron 45.0%
! CAGTTGGGACTTTTGTGGTT+TGG - chr1.2:31596835-31596854 MS.gene41299:CDS 45.0%
! GCTTTCAGTTGGGACTTTTG+TGG - chr1.2:31596830-31596849 MS.gene41299:CDS 45.0%
! GGTTCCGTTTGAGGATTTTC+GGG - chr1.2:31597574-31597593 MS.gene41299:intron 45.0%
! GTTGGGACTTTTGTGGTTTG+GGG - chr1.2:31596837-31596856 MS.gene41299:CDS 45.0%
!! AAGTGAGGTTGGTGTTTGTG+AGG + chr1.2:31597139-31597158 None:intergenic 45.0%
!! AATTGGACTGGTTGTTGGGA+TGG - chr1.2:31597785-31597804 MS.gene41299:intron 45.0%
!! GCTGTTCAGGTTGTTAGATG+AGG - chr1.2:31596647-31596666 MS.gene41299:CDS 45.0%
!! TGAAGCACGTTGTGTTGGTT+TGG + chr1.2:31597285-31597304 None:intergenic 45.0%
AACAGCAGGCAGTAAACAGC+AGG + chr1.2:31596574-31596593 None:intergenic 50.0%
AGAGAACGTTATGTTGCCGG+AGG - chr1.2:31597553-31597572 MS.gene41299:intron 50.0%
CAGAGCTAATTCGACAGCTG+AGG - chr1.2:31597843-31597862 MS.gene41299:CDS 50.0%
CTCAGCTGTCGAATTAGCTC+TGG + chr1.2:31597845-31597864 None:intergenic 50.0%
CTGTTTACTGCCTGCTGTTC+AGG - chr1.2:31596575-31596594 MS.gene41299:CDS 50.0%
GAGGATCTGAATGGGTGTAC+TGG - chr1.2:31597743-31597762 MS.gene41299:intron 50.0%
GATGGTGAAGCACGTTGTGT+TGG + chr1.2:31597290-31597309 None:intergenic 50.0%
GCTAGCAAGACGCTTAGAGA+CGG + chr1.2:31596929-31596948 None:intergenic 50.0%
GGTGTTTGTGAGGAAGAGGA+AGG + chr1.2:31597129-31597148 None:intergenic 50.0%
GGTTTGTGAGGGTGGATAAG+TGG + chr1.2:31597091-31597110 None:intergenic 50.0%
! AGGTTTAGGGTTTGTGAGGG+TGG + chr1.2:31597099-31597118 None:intergenic 50.0%
! GGAGTGTCTTGTTCCGTTGA+TGG - chr1.2:31597913-31597932 MS.gene41299:CDS 50.0%
! GGTTGGTGTTTGTGAGGAAG+AGG + chr1.2:31597133-31597152 None:intergenic 50.0%
! GTGGCAGCAGGTTAGGTTTT+TGG - chr1.2:31596696-31596715 MS.gene41299:CDS 50.0%
! TCCGACCCTTTTGTCAATGG+AGG - chr1.2:31597724-31597743 MS.gene41299:intron 50.0%
!!! CCGTTTGAGGATTTTCGGGT+TGG - chr1.2:31597578-31597597 MS.gene41299:intron 50.0%
CAGTTGTGCAGGGACTGTTG+CGG - chr1.2:31596733-31596752 MS.gene41299:CDS 55.0%
CTAACCTGCTGCCACCAGAA+AGG + chr1.2:31596691-31596710 None:intergenic 55.0%
GGTTATGGAAGACACCGCCA+GGG + chr1.2:31597250-31597269 None:intergenic 55.0%
GTTATGGAAGACACCGCCAG+GGG + chr1.2:31597249-31597268 None:intergenic 55.0%
TACGAGCGTTATAACGCCCG+TGG - chr1.2:31597530-31597549 MS.gene41299:intron 55.0%
TGCTATGAGACGTCGTGCAG+CGG + chr1.2:31597321-31597340 None:intergenic 55.0%
TGTGAGGGTGGATAAGTGGG+TGG + chr1.2:31597087-31597106 None:intergenic 55.0%
! AGCTCTGGTGACACTTCCTC+TGG + chr1.2:31597830-31597849 None:intergenic 55.0%
! CTTTCTGGTGGCAGCAGGTT+AGG - chr1.2:31596689-31596708 MS.gene41299:CDS 55.0%
! GGATAAGTGGGTGGTGGTGT+GGG + chr1.2:31597078-31597097 None:intergenic 55.0%
! TGGATAAGTGGGTGGTGGTG+TGG + chr1.2:31597079-31597098 None:intergenic 55.0%
CGCAACAGTCCCTGCACAAC+TGG + chr1.2:31596735-31596754 None:intergenic 60.0%
CGGTTATGGAAGACACCGCC+AGG + chr1.2:31597251-31597270 None:intergenic 60.0%
CGTGCAGCGGAGATGAGTGA+TGG + chr1.2:31597308-31597327 None:intergenic 60.0%
GAGGGTGGATAAGTGGGTGG+TGG + chr1.2:31597084-31597103 None:intergenic 60.0%
GGGATACGACGGAGGTGGTA+GGG + chr1.2:31597229-31597248 None:intergenic 60.0%
GTGGAAGAGGGCCAGGTCAT+CGG + chr1.2:31597045-31597064 None:intergenic 60.0%
GTTGCCGGAGGTTCCGTTTG+AGG - chr1.2:31597565-31597584 MS.gene41299:intron 60.0%
! TAAGTGGGTGGTGGTGTGGG+TGG + chr1.2:31597075-31597094 None:intergenic 60.0%
! TGCTCCTTTCTGGTGGCAGC+AGG - chr1.2:31596684-31596703 MS.gene41299:CDS 60.0%
ACCACCTCCGTCGTATCCCC+TGG - chr1.2:31597230-31597249 MS.gene41299:CDS 65.0%
ACCTCCGTCGTATCCCCTGG+CGG - chr1.2:31597233-31597252 MS.gene41299:CDS 65.0%
CGGAGGTGGTAGGGTCTGCA+TGG + chr1.2:31597220-31597239 None:intergenic 65.0%
GACACCGCCAGGGGATACGA+CGG + chr1.2:31597240-31597259 None:intergenic 65.0%
GGGGATACGACGGAGGTGGT+AGG + chr1.2:31597230-31597249 None:intergenic 65.0%
! GGTGGTGGCACGGTGGAAGA+GGG + chr1.2:31597057-31597076 None:intergenic 65.0%
! TGGTGGTGTGGGTGGTGGCA+CGG + chr1.2:31597067-31597086 None:intergenic 65.0%
ACCGCCAGGGGATACGACGG+AGG + chr1.2:31597237-31597256 None:intergenic 70.0%
AGGGCCAGGTCATCGGCGTC+GGG + chr1.2:31597038-31597057 None:intergenic 70.0%
GAGGGCCAGGTCATCGGCGT+CGG + chr1.2:31597039-31597058 None:intergenic 70.0%
GCCAGGGGATACGACGGAGG+TGG + chr1.2:31597234-31597253 None:intergenic 70.0%
TGGCACGGTGGAAGAGGGCC+AGG + chr1.2:31597052-31597071 None:intergenic 70.0%
! GGGTGGTGGCACGGTGGAAG+AGG + chr1.2:31597058-31597077 None:intergenic 70.0%
! GTGGGTGGTGGTGTGGGTGG+TGG + chr1.2:31597072-31597091 None:intergenic 70.0%
! TGGTGTGGGTGGTGGCACGG+TGG + chr1.2:31597064-31597083 None:intergenic 70.0%
CTGCCCCGACGCCGATGACC+TGG - chr1.2:31597031-31597050 MS.gene41299:CDS 75.0%
GGGCCAGGTCATCGGCGTCG+GGG + chr1.2:31597037-31597056 None:intergenic 75.0%
! CATCGGCGTCGGGGCAGTGG+CGG + chr1.2:31597028-31597047 None:intergenic 75.0%
! GGTCATCGGCGTCGGGGCAG+TGG + chr1.2:31597031-31597050 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 31596561 31597967 31596561 ID=MS.gene41299
chr1.2 mRNA 31596561 31597967 31596561 ID=MS.gene41299.t1;Parent=MS.gene41299
chr1.2 exon 31597823 31597967 31597823 ID=MS.gene41299.t1.exon1;Parent=MS.gene41299.t1
chr1.2 CDS 31597823 31597967 31597823 ID=cds.MS.gene41299.t1;Parent=MS.gene41299.t1
chr1.2 exon 31596561 31597303 31596561 ID=MS.gene41299.t1.exon2;Parent=MS.gene41299.t1
chr1.2 CDS 31596561 31597303 31596561 ID=cds.MS.gene41299.t1;Parent=MS.gene41299.t1
Gene Sequence

>MS.gene41299

ATGTGCTTTTCCTGCTGTTTACTGCCTGCTGTTCAGGTTGTTAGATTTCTGGTGTGTAGATGTGCTTTTCCTGCTGTTTACTGCCTGCTGTTCAGGTTGTTAGATGAGGTTGCAGCAGGTTTTTGCTCCTTTCTGGTGGCAGCAGGTTAGGTTTTTGGCGTGCAAATCATTCCAGTTGTGCAGGGACTGTTGCGGAAGAGCTATGAGACTGAAATCTAGTGATTTGAATTGGATTTCAGAGGCATAACATTTCTGTTAGCTTGGTTTTTGCTTTCAGTTGGGACTTTTGTGGTTTGGGGCCTTCAACTTTTCCATGTTTTTGTGTGGATGTTACGCTTATAGGCGTCATCTTTGTTATTTTTTCTCCGTCTCTAAGCGTCTTGCTAGCGTTTCAGTTTCAATAAATTTTGCTAATTAAAAAAAAAAAAAAAGATAGCGGCCATCCCATATTTTTTTGTCTGGCTCCGCCACTGCCCCGACGCCGATGACCTGGCCCTCTTCCACCGTGCCACCACCCACACCACCACCCACTTATCCACCCTCACAAACCCTAAACCTAAAATCGCCTTCCTCTTCCTCACAAACACCAACCTCACTTTTGCTCCTTTATGGGAAAAATTCTTCGCCGGAAACAACCATCTCTTCAATATATACATCCATGCAGACCCTACCACCTCCGTCGTATCCCCTGGCGGTGTCTTCCATAACCGTTTCATCTCTTCCAAACCAACACAACGTGCTTCACCATCACTCATCTCCGCTGCACGACGTCTCATAGCATCTGCTCTCTTAGATGATCCACTTAACCAATACTTTGCTTTAGTTTCTCAACACTGTGTTCCGCTCTTGTCGTTTCGATTCGTTTATAACTACCTTTTTAAAAATCAGTTAATGTCGTTAGCGAGTTTTTCTGACTTTAACTTACTGTACCCTAGCTATATTGAGATTCTCTCTGAGGATCCGAATCTCTACGAGCGTTATAACGCCCGTGGAGAGAACGTTATGTTGCCGGAGGTTCCGTTTGAGGATTTTCGGGTTGGTTCGCAGTTTTTTATCTTGAACAGGAAGCATGCAAAAGTTGTGGTTAGAGATTATAAGCTCTGGAAGAAGTTTCGGATTCCTTGTGTAAATTTGGATTCTTGTTATCCAGAAGAGCATTATTTTCCGACCCTTTTGTCAATGGAGGATCTGAATGGGTGTACTGGTTTTACACTGACGAGAGTTAATTGGACTGGTTGTTGGGATGGACATCCTCATCTTTATACTCCAGAGGAAGTGTCACCAGAGCTAATTCGACAGCTGAGGGTGTCGAATTCGAGTTATTCCTATCTATTTGCAAGGAAATTCTCGCCGGAGTGTCTTGTTCCGTTGATGGATATAGCTGATGATGTCATTTTCCGGGATTGA
Protein sequence

>MS.gene41299.t1

MCFSCCLLPAVQVVRFLVCRCAFPAVYCLLFRLLDEVAAGFCSFLVAADPTTSVVSPGGVFHNRFISSKPTQRASPSLISAARRLIASALLDDPLNQYFALVSQHCVPLLSFRFVYNYLFKNQLMSLASFSDFNLLYPSYIEILSEDPNLYERYNARGENVMLPEVPFEDFRVGSQFFILNRKHAKVVVRDYKLWKKFRIPCVNLDSCYPEEHYFPTLLSMEDLNGCTGFTLTRVNWTGCWDGHPHLYTPEEVSPELIRQLRVSNSSYSYLFARKFSPECLVPLMDIADDVIFRD