AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41316

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41316.t1 MTR_1g048320 92.151 344 22 2 1 339 1 344 0.0 620
MS.gene41316.t1 MTR_1g031060 71.340 321 84 5 24 339 45 362 1.49e-148 423
MS.gene41316.t1 MTR_1g031080 60.870 345 72 6 2 339 4 292 4.54e-135 386
MS.gene41316.t1 MTR_2g087610 56.081 296 118 4 56 339 73 368 2.73e-109 323
MS.gene41316.t1 MTR_3g106930 48.136 295 125 6 61 339 95 377 9.65e-82 253
MS.gene41316.t1 MTR_2g005350 37.299 311 165 10 37 336 145 436 4.50e-50 173
MS.gene41316.t1 MTR_1g110290 35.484 310 175 6 35 336 99 391 5.99e-50 172
MS.gene41316.t1 MTR_4g127550 34.539 304 146 7 59 331 106 387 4.10e-49 169
MS.gene41316.t1 MTR_8g015500 36.014 286 157 8 60 336 143 411 6.14e-49 169
MS.gene41316.t1 MTR_2g037600 33.115 305 152 6 58 331 103 386 3.23e-48 167
MS.gene41316.t1 MTR_1g009960 35.948 306 148 9 53 329 104 390 9.30e-48 166
MS.gene41316.t1 MTR_5g055480 37.979 287 148 8 60 336 122 388 2.21e-47 164
MS.gene41316.t1 MTR_1g016880 35.231 281 155 7 60 331 106 368 5.40e-46 160
MS.gene41316.t1 MTR_2g037620 33.003 303 150 6 60 331 97 377 6.11e-46 160
MS.gene41316.t1 MTR_1g009960 36.466 266 146 7 53 313 104 351 6.25e-46 160
MS.gene41316.t1 MTR_3g108740 36.842 304 134 10 60 329 92 371 2.05e-45 159
MS.gene41316.t1 MTR_5g006930 35.179 307 168 9 37 332 94 380 9.60e-45 157
MS.gene41316.t1 MTR_6g083830 36.774 310 164 12 35 332 124 413 1.57e-43 155
MS.gene41316.t1 MTR_5g006920 34.528 307 170 9 37 332 129 415 1.02e-42 153
MS.gene41316.t1 MTR_3g104840 34.202 307 158 7 35 332 116 387 1.47e-42 152
MS.gene41316.t1 MTR_2g024120 30.599 317 150 13 54 321 56 351 9.68e-31 120
MS.gene41316.t1 MTR_8g094180 28.274 336 168 11 51 332 46 362 9.00e-30 117
MS.gene41316.t1 MTR_8g094180 29.577 284 150 10 51 303 46 310 8.68e-28 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41316.t1 AT3G52060 57.643 314 114 6 35 339 43 346 3.15e-124 360
MS.gene41316.t1 AT5G22070 50.975 359 145 9 9 339 7 362 1.16e-115 339
MS.gene41316.t1 AT5G25330 44.037 327 144 10 33 339 55 362 1.20e-78 245
MS.gene41316.t1 AT4G32290 45.820 323 141 7 37 339 71 379 2.12e-77 242
MS.gene41316.t1 AT4G31350 38.538 301 135 7 56 329 84 361 4.07e-60 197
MS.gene41316.t1 AT4G31350 38.538 301 140 7 56 329 84 366 6.83e-59 194
MS.gene41316.t1 AT4G31350 38.538 301 140 7 56 329 84 366 6.83e-59 194
MS.gene41316.t1 AT4G31350 38.538 301 140 7 56 329 84 366 6.83e-59 194
MS.gene41316.t1 AT3G21310 37.762 286 151 8 60 336 114 381 5.46e-51 174
MS.gene41316.t1 AT3G21310 37.762 286 151 8 60 336 114 381 5.46e-51 174
MS.gene41316.t1 AT5G25970 37.544 285 151 8 57 332 115 381 3.22e-50 172
MS.gene41316.t1 AT5G25970 37.544 285 151 8 57 332 115 381 3.22e-50 172
MS.gene41316.t1 AT5G25970 37.544 285 151 8 57 332 115 381 3.22e-50 172
MS.gene41316.t1 AT1G51770 36.713 286 154 8 60 336 123 390 5.95e-49 169
MS.gene41316.t1 AT5G11730 34.965 286 159 7 60 336 117 384 9.51e-48 166
MS.gene41316.t1 AT1G10280 35.192 287 158 7 60 336 142 410 2.01e-46 162
MS.gene41316.t1 AT1G68380 35.185 324 173 8 28 337 91 391 4.74e-46 161
MS.gene41316.t1 AT1G68390 33.754 317 173 8 35 336 112 406 6.12e-46 161
MS.gene41316.t1 AT1G10880 34.164 281 160 6 60 332 117 380 8.49e-45 157
MS.gene41316.t1 AT2G19160 33.993 303 146 7 61 331 106 386 5.16e-44 155
MS.gene41316.t1 AT2G19160 33.993 303 146 7 61 331 106 386 5.16e-44 155
MS.gene41316.t1 AT4G30060 33.993 303 146 7 61 331 109 389 4.62e-43 153
MS.gene41316.t1 AT4G30060 33.993 303 146 7 61 331 109 389 4.62e-43 153
MS.gene41316.t1 AT4G25870 34.132 334 157 12 33 331 75 380 9.33e-42 150
MS.gene41316.t1 AT1G73810 37.329 292 145 10 61 336 147 416 3.92e-41 149
MS.gene41316.t1 AT5G57270 33.443 305 150 7 59 331 96 379 1.56e-40 146
MS.gene41316.t1 AT5G57270 33.443 305 150 7 59 331 96 379 1.56e-40 146
MS.gene41316.t1 AT5G57270 33.443 305 150 7 59 331 96 379 1.56e-40 146
MS.gene41316.t1 AT5G57270 33.443 305 150 7 59 331 96 379 1.56e-40 146
MS.gene41316.t1 AT5G57270 33.443 305 150 7 59 331 96 379 1.56e-40 146
MS.gene41316.t1 AT5G16170 32.632 285 162 5 61 332 136 403 9.80e-40 145
MS.gene41316.t1 AT1G51770 32.517 286 139 7 60 336 123 363 7.16e-37 136
MS.gene41316.t1 AT5G14550 29.080 337 188 11 3 318 15 321 1.02e-33 127
MS.gene41316.t1 AT5G14550 27.604 384 195 13 3 333 15 368 1.24e-31 122
MS.gene41316.t1 AT5G14550 27.763 371 186 12 3 321 15 355 2.38e-31 121
MS.gene41316.t1 AT1G62305 28.954 373 180 14 3 321 15 356 8.21e-30 117
MS.gene41316.t1 AT1G11940 29.755 326 165 11 45 324 58 365 4.76e-28 112
MS.gene41316.t1 AT1G62305 30.717 293 144 11 3 267 15 276 1.91e-26 107
MS.gene41316.t1 AT5G14550 27.568 370 186 15 3 333 15 341 3.25e-25 104
MS.gene41316.t1 AT1G11940 32.367 207 118 6 45 247 58 246 1.16e-20 90.5
MS.gene41316.t1 AT1G62305 27.078 373 163 14 3 321 15 332 3.38e-20 90.5
MS.gene41316.t1 AT3G21310 47.170 106 53 3 60 164 114 217 1.73e-19 87.0

Find 110 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTCACCTTTGCTCCTTTA+TGG 0.074069 1.2:+31360833 MS.gene41316:CDS
TTGAATCTTGTACTTGTTTA+AGG 0.108034 1.2:-31361142 None:intergenic
TAGGAAGAGGAAGGCGATTT+TGG 0.185523 1.2:-31360800 None:intergenic
GTTGAAGAGGTGGTTGTTTC+CGG 0.217030 1.2:-31360869 None:intergenic
GTCGGAAAGTAATGCTCTTC+TGG 0.251063 1.2:-31361384 None:intergenic
CCTCACCTTTGCTCCTTTAT+GGG 0.265226 1.2:+31360834 MS.gene41316:CDS
CCTTTGCATGGTTCCGGTTC+AGG 0.283118 1.2:-31361293 None:intergenic
AGGTCCTCCGCGTCGGGGTC+AGG 0.290705 1.2:-31360715 None:intergenic
AGAGGCACGTTGGGTTGTTT+TGG 0.330994 1.2:-31360968 None:intergenic
TCTAGCGCCGTTGATGGATA+TGG 0.336097 1.2:+31361593 MS.gene41316:CDS
AAAAGTTGTGGAAGAAGTTT+CGG 0.336219 1.2:+31361331 MS.gene41316:CDS
TTACTCTTACGAGAGTTAAC+TGG 0.341127 1.2:+31361445 MS.gene41316:CDS
AGGTGAGGTTGGTATTTGTT+AGG 0.341432 1.2:-31360819 None:intergenic
AAGGGATGAAGTGGCTTTGA+TGG 0.347235 1.2:-31360945 None:intergenic
GAACAACCTTTGCATGGTTC+CGG 0.347319 1.2:-31361299 None:intergenic
GTAATGCTCTTCTGGGTAAC+AGG 0.353277 1.2:-31361376 None:intergenic
TTATGGGAAATATTCTTTGC+CGG 0.354403 1.2:+31360850 MS.gene41316:CDS
CGCAGTTCTTTATCCTGAAC+CGG 0.364355 1.2:+31361280 MS.gene41316:CDS
CGGGGTCAGGGTTGGAAAAC+GGG 0.368387 1.2:-31360702 None:intergenic
TCTCTTAGCCACTGCTATAT+TGG 0.370952 1.2:+31361017 MS.gene41316:CDS
TGCAAACAGATAGGAATAAC+TGG 0.371564 1.2:-31361550 None:intergenic
ATCAACGGCGCTAGAGTTTC+CGG 0.385332 1.2:-31361585 None:intergenic
AGAGCAAGGTCCTCCGCGTC+GGG 0.395834 1.2:-31360721 None:intergenic
GGAAACTCTAGCGCCGTTGA+TGG 0.396925 1.2:+31361587 MS.gene41316:CDS
GCAAAGAATATTTCCCATAA+AGG 0.406338 1.2:-31360847 None:intergenic
TCTTCTGTCGATGGAGGATC+CGG 0.424084 1.2:+31361407 MS.gene41316:CDS
TCGGGGTCAGGGTTGGAAAA+CGG 0.425351 1.2:-31360703 None:intergenic
CTAAGCTGGCGTACAAGCTC+CGG 0.437738 1.2:-31361516 None:intergenic
GGTCCTCCGCGTCGGGGTCA+GGG 0.440712 1.2:-31360714 None:intergenic
GCTTTGATGGAAGACGCCTC+CGG 0.443380 1.2:-31360932 None:intergenic
GAGGATCCGGATGGCTGCGC+TGG 0.448420 1.2:+31361420 MS.gene41316:CDS
GGTTGGTATTTGTTAGGAAG+AGG 0.449439 1.2:-31360813 None:intergenic
TACTCGAGAGGAGGTGTCTC+CGG 0.452341 1.2:+31361497 MS.gene41316:CDS
GTAAAACCAGCGCAGCCATC+CGG 0.455643 1.2:-31361426 None:intergenic
GGTGAGACGACGGAGGAAAC+GGG 0.456234 1.2:-31360910 None:intergenic
CTCTCTTCCGCCGCGCCACA+AGG 0.462891 1.2:+31360740 MS.gene41316:CDS
CTCCGCGTCGGGGTCAGGGT+TGG 0.467120 1.2:-31360710 None:intergenic
AATACAATGTTGGGAGAGTA+AGG 0.471648 1.2:-31361064 None:intergenic
GATGCCGGAGGTTTCATTCA+AGG 0.472977 1.2:+31361242 MS.gene41316:CDS
GGGTGAGACGACGGAGGAAA+CGG 0.478351 1.2:-31360911 None:intergenic
AAGTGACGGAGAGGCACGTT+GGG 0.481033 1.2:-31360977 None:intergenic
GTTCTTGAAGGTAAATAAGT+GGG 0.482830 1.2:-31360770 None:intergenic
AAGGCAAAGTATTGGTTATG+TGG 0.483665 1.2:-31361045 None:intergenic
TCGGAAAGTAATGCTCTTCT+GGG 0.486786 1.2:-31361383 None:intergenic
GAAGAGTGGAATACAATGTT+GGG 0.491853 1.2:-31361073 None:intergenic
GAATTTCCTTGCAAACAGAT+AGG 0.494280 1.2:-31361559 None:intergenic
GAGTCAATCTCAATGAAGCT+AGG 0.506518 1.2:-31361168 None:intergenic
CTTTGATGGAAGACGCCTCC+GGG 0.508919 1.2:-31360931 None:intergenic
GTTTCCTCCGTCGTCTCACC+CGG 0.509860 1.2:+31360913 MS.gene41316:CDS
GGTTCTTGAAGGTAAATAAG+TGG 0.511126 1.2:-31360771 None:intergenic
TTTGGGTTTAGGGTTCTTGA+AGG 0.511410 1.2:-31360782 None:intergenic
GTTATTCCTATCTGTTTGCA+AGG 0.511432 1.2:+31361553 MS.gene41316:CDS
CAGGAATGCGTATCTATACA+TGG 0.512776 1.2:-31361357 None:intergenic
TTATAGCGCTGGTAGAGATT+CGG 0.513272 1.2:-31361198 None:intergenic
TTCCACGAGCATTATAGCGC+TGG 0.514680 1.2:-31361209 None:intergenic
AGAAGAGTGGAATACAATGT+TGG 0.514911 1.2:-31361074 None:intergenic
AGTTAACTGGACTGGTTGTA+CGG 0.524550 1.2:+31361458 MS.gene41316:CDS
CTTTCCGACTCTTCTGTCGA+TGG 0.524666 1.2:+31361398 MS.gene41316:CDS
TGCAGTGCAAGTTTCAATCT+CGG 0.528050 1.2:-31361632 None:intergenic
GGGAGAGTAAGGCAAAGTAT+TGG 0.537563 1.2:-31361053 None:intergenic
TCCTCCATCGACAGAAGAGT+CGG 0.543328 1.2:-31361402 None:intergenic
AAATCCTTGAATGAAACCTC+CGG 0.545006 1.2:-31361246 None:intergenic
CTTACGAGAGTTAACTGGAC+TGG 0.548736 1.2:+31361450 MS.gene41316:CDS
GGTATTTGTTAGGAAGAGGA+AGG 0.549687 1.2:-31360809 None:intergenic
GGCTAAGAGACGGCGAGCAG+CGG 0.557898 1.2:-31361004 None:intergenic
TACTTGTTTAAGGACTCTAC+CGG 0.558141 1.2:-31361132 None:intergenic
GCGCTATAATGCTCGTGGAA+AGG 0.565767 1.2:+31361212 MS.gene41316:CDS
GACGCCTCCGGGTGAGACGA+CGG 0.567356 1.2:-31360920 None:intergenic
AGTCAATCTCAATGAAGCTA+GGG 0.567722 1.2:-31361167 None:intergenic
TGGAAAGGATGTAATGATGC+CGG 0.568418 1.2:+31361227 MS.gene41316:CDS
TCCGACTCTTCTGTCGATGG+AGG 0.569466 1.2:+31361401 MS.gene41316:CDS
GAAAACGGGAAGTAAGATTG+AGG 0.570111 1.2:-31360688 None:intergenic
TAAAGGAGCAAAGGTGAGGT+TGG 0.572056 1.2:-31360830 None:intergenic
TTCTGCGAGATCAAAAGTTG+TGG 0.575067 1.2:+31361319 MS.gene41316:CDS
GAGAGCAAGGTCCTCCGCGT+CGG 0.575874 1.2:-31360722 None:intergenic
AAAACGGGAAGTAAGATTGA+GGG 0.576076 1.2:-31360687 None:intergenic
TCCTCTCGAGTATAAAGATG+CGG 0.582936 1.2:-31361486 None:intergenic
AGGCAAAGTATTGGTTATGT+GGG 0.583300 1.2:-31361044 None:intergenic
TACCAGCGCTATAATGCTCG+TGG 0.583876 1.2:+31361207 MS.gene41316:CDS
CTCGCAGAACAACCTTTGCA+TGG 0.585317 1.2:-31361305 None:intergenic
GTTTGCAAGGAAATTCTCAC+CGG 0.585980 1.2:+31361566 MS.gene41316:CDS
CCCATAAAGGAGCAAAGGTG+AGG 0.594602 1.2:-31360834 None:intergenic
TGGCGCGGCGGAAGAGAGCA+AGG 0.594820 1.2:-31360735 None:intergenic
CCTCTCGAGTATAAAGATGC+GGG 0.597296 1.2:-31361485 None:intergenic
CTGTCGATGGAGGATCCGGA+TGG 0.603444 1.2:+31361411 MS.gene41316:CDS
TATTTCCCATAAAGGAGCAA+AGG 0.610784 1.2:-31360839 None:intergenic
ACAAATCGAAACGAGAAGAG+TGG 0.612100 1.2:-31361087 None:intergenic
CGAGCAGCGGCTATAAGTGA+CGG 0.620401 1.2:-31360991 None:intergenic
TTCTTGAAGGTAAATAAGTG+GGG 0.625774 1.2:-31360769 None:intergenic
AAACGGGAAGTAAGATTGAG+GGG 0.627961 1.2:-31360686 None:intergenic
ATATAGCAGTGGCTAAGAGA+CGG 0.629423 1.2:-31361014 None:intergenic
CAACCCTGACCCCGACGCGG+AGG 0.630344 1.2:+31360711 MS.gene41316:CDS
GGATGTAGATGTTGAAGAGG+TGG 0.641305 1.2:-31360879 None:intergenic
TTCCAACCCTGACCCCGACG+CGG 0.643455 1.2:+31360708 MS.gene41316:CDS
CCCGCATCTTTATACTCGAG+AGG 0.651444 1.2:+31361485 MS.gene41316:CDS
CGTGGATGTAGATGTTGAAG+AGG 0.655044 1.2:-31360882 None:intergenic
GGGGTGTTGTCCTTGTGGCG+CGG 0.655134 1.2:-31360750 None:intergenic
GAGCAAGGTCCTCCGCGTCG+GGG 0.655727 1.2:-31360720 None:intergenic
TAAGTGACGGAGAGGCACGT+TGG 0.660309 1.2:-31360978 None:intergenic
CCTGAACCGGAACCATGCAA+AGG 0.664001 1.2:+31361293 MS.gene41316:CDS
AGCGGCTATAAGTGACGGAG+AGG 0.667766 1.2:-31360986 None:intergenic
TCGTAAGCCATATCCATCAA+CGG 0.668887 1.2:-31361600 None:intergenic
TGGGTCATCCAATATAGCAG+TGG 0.673476 1.2:-31361025 None:intergenic
TCCTCCGTCGTCTCACCCGG+AGG 0.674844 1.2:+31360916 MS.gene41316:CDS
TAAGTGGGGTGTTGTCCTTG+TGG 0.684395 1.2:-31360755 None:intergenic
GCATCTTTATACTCGAGAGG+AGG 0.684710 1.2:+31361488 MS.gene41316:CDS
CGGAGGAAACGGGATCTGCG+TGG 0.688960 1.2:-31360900 None:intergenic
GTGTTGTCCTTGTGGCGCGG+CGG 0.702688 1.2:-31360747 None:intergenic
AAAGGATGTAATGATGCCGG+AGG 0.717780 1.2:+31361230 MS.gene41316:CDS
GCCTCCGGGTGAGACGACGG+AGG 0.727325 1.2:-31360917 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTGAATCTTGTACTTGTTTA+AGG - chr1.2:31361145-31361164 None:intergenic 25.0%
AAAAGTTGTGGAAGAAGTTT+CGG + chr1.2:31361331-31361350 MS.gene41316:CDS 30.0%
GCAAAGAATATTTCCCATAA+AGG - chr1.2:31360850-31360869 None:intergenic 30.0%
GTTCTTGAAGGTAAATAAGT+GGG - chr1.2:31360773-31360792 None:intergenic 30.0%
TTATGGGAAATATTCTTTGC+CGG + chr1.2:31360850-31360869 MS.gene41316:CDS 30.0%
TTCTTGAAGGTAAATAAGTG+GGG - chr1.2:31360772-31360791 None:intergenic 30.0%
!! TAACTCCCTTTTTGAAAATC+CGG + chr1.2:31361113-31361132 MS.gene41316:CDS 30.0%
!!! TGGATTTTGATTTTCTAAGC+TGG - chr1.2:31361533-31361552 None:intergenic 30.0%
AAAACGGGAAGTAAGATTGA+GGG - chr1.2:31360690-31360709 None:intergenic 35.0%
AAATCCTTGAATGAAACCTC+CGG - chr1.2:31361249-31361268 None:intergenic 35.0%
AATACAATGTTGGGAGAGTA+AGG - chr1.2:31361067-31361086 None:intergenic 35.0%
AGAAGAGTGGAATACAATGT+TGG - chr1.2:31361077-31361096 None:intergenic 35.0%
AGTCAATCTCAATGAAGCTA+GGG - chr1.2:31361170-31361189 None:intergenic 35.0%
GAAGAGTGGAATACAATGTT+GGG - chr1.2:31361076-31361095 None:intergenic 35.0%
GAATTTCCTTGCAAACAGAT+AGG - chr1.2:31361562-31361581 None:intergenic 35.0%
GGTTCTTGAAGGTAAATAAG+TGG - chr1.2:31360774-31360793 None:intergenic 35.0%
GTTATTCCTATCTGTTTGCA+AGG + chr1.2:31361553-31361572 MS.gene41316:CDS 35.0%
TACTTGTTTAAGGACTCTAC+CGG - chr1.2:31361135-31361154 None:intergenic 35.0%
TATTTCCCATAAAGGAGCAA+AGG - chr1.2:31360842-31360861 None:intergenic 35.0%
TGCAAACAGATAGGAATAAC+TGG - chr1.2:31361553-31361572 None:intergenic 35.0%
TTACTCTTACGAGAGTTAAC+TGG + chr1.2:31361445-31361464 MS.gene41316:CDS 35.0%
! ACTCTACCGGATTTTCAAAA+AGG - chr1.2:31361122-31361141 None:intergenic 35.0%
! CTCTACCGGATTTTCAAAAA+GGG - chr1.2:31361121-31361140 None:intergenic 35.0%
! TCATTCAAGGATTTTCGCAA+AGG + chr1.2:31361255-31361274 MS.gene41316:CDS 35.0%
!! AAGGCAAAGTATTGGTTATG+TGG - chr1.2:31361048-31361067 None:intergenic 35.0%
!! AGGCAAAGTATTGGTTATGT+GGG - chr1.2:31361047-31361066 None:intergenic 35.0%
AAACGGGAAGTAAGATTGAG+GGG - chr1.2:31360689-31360708 None:intergenic 40.0%
ACAAATCGAAACGAGAAGAG+TGG - chr1.2:31361090-31361109 None:intergenic 40.0%
ATATAGCAGTGGCTAAGAGA+CGG - chr1.2:31361017-31361036 None:intergenic 40.0%
CAGGAATGCGTATCTATACA+TGG - chr1.2:31361360-31361379 None:intergenic 40.0%
GAAAACGGGAAGTAAGATTG+AGG - chr1.2:31360691-31360710 None:intergenic 40.0%
GAGTCAATCTCAATGAAGCT+AGG - chr1.2:31361171-31361190 None:intergenic 40.0%
GTTTGCAAGGAAATTCTCAC+CGG + chr1.2:31361566-31361585 MS.gene41316:CDS 40.0%
TCCTCTCGAGTATAAAGATG+CGG - chr1.2:31361489-31361508 None:intergenic 40.0%
TCGGAAAGTAATGCTCTTCT+GGG - chr1.2:31361386-31361405 None:intergenic 40.0%
TCGTAAGCCATATCCATCAA+CGG - chr1.2:31361603-31361622 None:intergenic 40.0%
TCTCTTAGCCACTGCTATAT+TGG + chr1.2:31361017-31361036 MS.gene41316:CDS 40.0%
TGGAAAGGATGTAATGATGC+CGG + chr1.2:31361227-31361246 MS.gene41316:CDS 40.0%
TTCTGCGAGATCAAAAGTTG+TGG + chr1.2:31361319-31361338 MS.gene41316:CDS 40.0%
! GGTATTTGTTAGGAAGAGGA+AGG - chr1.2:31360812-31360831 None:intergenic 40.0%
! GGTTGGTATTTGTTAGGAAG+AGG - chr1.2:31360816-31360835 None:intergenic 40.0%
! TTTGGGTTTAGGGTTCTTGA+AGG - chr1.2:31360785-31360804 None:intergenic 40.0%
!! AGGTGAGGTTGGTATTTGTT+AGG - chr1.2:31360822-31360841 None:intergenic 40.0%
!! AGTTAACTGGACTGGTTGTA+CGG + chr1.2:31361458-31361477 MS.gene41316:CDS 40.0%
!! TTATAGCGCTGGTAGAGATT+CGG - chr1.2:31361201-31361220 None:intergenic 40.0%
!!! TTGTTTTGGAAGGGATGAAG+TGG - chr1.2:31360957-31360976 None:intergenic 40.0%
AAAGGATGTAATGATGCCGG+AGG + chr1.2:31361230-31361249 MS.gene41316:CDS 45.0%
ACCTCACCTTTGCTCCTTTA+TGG + chr1.2:31360833-31360852 MS.gene41316:CDS 45.0%
CCTCACCTTTGCTCCTTTAT+GGG + chr1.2:31360834-31360853 MS.gene41316:CDS 45.0%
CCTCTCGAGTATAAAGATGC+GGG - chr1.2:31361488-31361507 None:intergenic 45.0%
CGCAGTTCTTTATCCTGAAC+CGG + chr1.2:31361280-31361299 MS.gene41316:CDS 45.0%
CGTGGATGTAGATGTTGAAG+AGG - chr1.2:31360885-31360904 None:intergenic 45.0%
CTTACGAGAGTTAACTGGAC+TGG + chr1.2:31361450-31361469 MS.gene41316:CDS 45.0%
GAACAACCTTTGCATGGTTC+CGG - chr1.2:31361302-31361321 None:intergenic 45.0%
GCATCTTTATACTCGAGAGG+AGG + chr1.2:31361488-31361507 MS.gene41316:CDS 45.0%
GGATGTAGATGTTGAAGAGG+TGG - chr1.2:31360882-31360901 None:intergenic 45.0%
GGGAGAGTAAGGCAAAGTAT+TGG - chr1.2:31361056-31361075 None:intergenic 45.0%
GTAATGCTCTTCTGGGTAAC+AGG - chr1.2:31361379-31361398 None:intergenic 45.0%
GTCGGAAAGTAATGCTCTTC+TGG - chr1.2:31361387-31361406 None:intergenic 45.0%
TAAAGGAGCAAAGGTGAGGT+TGG - chr1.2:31360833-31360852 None:intergenic 45.0%
TGGGTCATCCAATATAGCAG+TGG - chr1.2:31361028-31361047 None:intergenic 45.0%
! AGGAAGAGGAAGGCGATTTT+GGG - chr1.2:31360802-31360821 None:intergenic 45.0%
! GTTGAAGAGGTGGTTGTTTC+CGG - chr1.2:31360872-31360891 None:intergenic 45.0%
! TAGGAAGAGGAAGGCGATTT+TGG - chr1.2:31360803-31360822 None:intergenic 45.0%
!! AAGGGATGAAGTGGCTTTGA+TGG - chr1.2:31360948-31360967 None:intergenic 45.0%
!!! AGGAAGGCGATTTTGGGTTT+AGG - chr1.2:31360796-31360815 None:intergenic 45.0%
!!! CACGTTGGGTTGTTTTGGAA+GGG - chr1.2:31360966-31360985 None:intergenic 45.0%
!!! GGAAGGCGATTTTGGGTTTA+GGG - chr1.2:31360795-31360814 None:intergenic 45.0%
ATCAACGGCGCTAGAGTTTC+CGG - chr1.2:31361588-31361607 None:intergenic 50.0%
CCCATAAAGGAGCAAAGGTG+AGG - chr1.2:31360837-31360856 None:intergenic 50.0%
CCCGCATCTTTATACTCGAG+AGG + chr1.2:31361485-31361504 MS.gene41316:CDS 50.0%
CTCGCAGAACAACCTTTGCA+TGG - chr1.2:31361308-31361327 None:intergenic 50.0%
CTTTCCGACTCTTCTGTCGA+TGG + chr1.2:31361398-31361417 MS.gene41316:CDS 50.0%
GATGCCGGAGGTTTCATTCA+AGG + chr1.2:31361242-31361261 MS.gene41316:CDS 50.0%
GCGCTATAATGCTCGTGGAA+AGG + chr1.2:31361212-31361231 MS.gene41316:CDS 50.0%
TACCAGCGCTATAATGCTCG+TGG + chr1.2:31361207-31361226 MS.gene41316:CDS 50.0%
TCCTCCATCGACAGAAGAGT+CGG - chr1.2:31361405-31361424 None:intergenic 50.0%
TCTTCTGTCGATGGAGGATC+CGG + chr1.2:31361407-31361426 MS.gene41316:CDS 50.0%
TTCCACGAGCATTATAGCGC+TGG - chr1.2:31361212-31361231 None:intergenic 50.0%
! TCTAGCGCCGTTGATGGATA+TGG + chr1.2:31361593-31361612 MS.gene41316:CDS 50.0%
!! AGAGGCACGTTGGGTTGTTT+TGG - chr1.2:31360971-31360990 None:intergenic 50.0%
!! TAAGTGGGGTGTTGTCCTTG+TGG - chr1.2:31360758-31360777 None:intergenic 50.0%
!!! GCACGTTGGGTTGTTTTGGA+AGG - chr1.2:31360967-31360986 None:intergenic 50.0%
CCTGAACCGGAACCATGCAA+AGG + chr1.2:31361293-31361312 MS.gene41316:CDS 55.0%
CCTTTGCATGGTTCCGGTTC+AGG - chr1.2:31361296-31361315 None:intergenic 55.0%
CGAGCAGCGGCTATAAGTGA+CGG - chr1.2:31360994-31361013 None:intergenic 55.0%
CTAAGCTGGCGTACAAGCTC+CGG - chr1.2:31361519-31361538 None:intergenic 55.0%
CTTTGATGGAAGACGCCTCC+GGG - chr1.2:31360934-31360953 None:intergenic 55.0%
GCTTTGATGGAAGACGCCTC+CGG - chr1.2:31360935-31360954 None:intergenic 55.0%
GGAAACTCTAGCGCCGTTGA+TGG + chr1.2:31361587-31361606 MS.gene41316:CDS 55.0%
GTAAAACCAGCGCAGCCATC+CGG - chr1.2:31361429-31361448 None:intergenic 55.0%
TCCGACTCTTCTGTCGATGG+AGG + chr1.2:31361401-31361420 MS.gene41316:CDS 55.0%
TCGGGGTCAGGGTTGGAAAA+CGG - chr1.2:31360706-31360725 None:intergenic 55.0%
! AAGTGACGGAGAGGCACGTT+GGG - chr1.2:31360980-31360999 None:intergenic 55.0%
! AGCGGCTATAAGTGACGGAG+AGG - chr1.2:31360989-31361008 None:intergenic 55.0%
! TAAGTGACGGAGAGGCACGT+TGG - chr1.2:31360981-31361000 None:intergenic 55.0%
!! TACTCGAGAGGAGGTGTCTC+CGG + chr1.2:31361497-31361516 MS.gene41316:CDS 55.0%
CGGGGTCAGGGTTGGAAAAC+GGG - chr1.2:31360705-31360724 None:intergenic 60.0%
CTGTCGATGGAGGATCCGGA+TGG + chr1.2:31361411-31361430 MS.gene41316:CDS 60.0%
GGGTGAGACGACGGAGGAAA+CGG - chr1.2:31360914-31360933 None:intergenic 60.0%
GGTGAGACGACGGAGGAAAC+GGG - chr1.2:31360913-31360932 None:intergenic 60.0%
GTTTCCTCCGTCGTCTCACC+CGG + chr1.2:31360913-31360932 MS.gene41316:CDS 60.0%
AGAGCAAGGTCCTCCGCGTC+GGG - chr1.2:31360724-31360743 None:intergenic 65.0%
CGGAGGAAACGGGATCTGCG+TGG - chr1.2:31360903-31360922 None:intergenic 65.0%
GAGAGCAAGGTCCTCCGCGT+CGG - chr1.2:31360725-31360744 None:intergenic 65.0%
GGCTAAGAGACGGCGAGCAG+CGG - chr1.2:31361007-31361026 None:intergenic 65.0%
GTGTTGTCCTTGTGGCGCGG+CGG - chr1.2:31360750-31360769 None:intergenic 65.0%
TTCCAACCCTGACCCCGACG+CGG + chr1.2:31360708-31360727 MS.gene41316:CDS 65.0%
!! GGGGTGTTGTCCTTGTGGCG+CGG - chr1.2:31360753-31360772 None:intergenic 65.0%
CTCTCTTCCGCCGCGCCACA+AGG + chr1.2:31360740-31360759 MS.gene41316:CDS 70.0%
GACGCCTCCGGGTGAGACGA+CGG - chr1.2:31360923-31360942 None:intergenic 70.0%
GAGCAAGGTCCTCCGCGTCG+GGG - chr1.2:31360723-31360742 None:intergenic 70.0%
GAGGATCCGGATGGCTGCGC+TGG + chr1.2:31361420-31361439 MS.gene41316:CDS 70.0%
TCCTCCGTCGTCTCACCCGG+AGG + chr1.2:31360916-31360935 MS.gene41316:CDS 70.0%
TGGCGCGGCGGAAGAGAGCA+AGG - chr1.2:31360738-31360757 None:intergenic 70.0%
AGGTCCTCCGCGTCGGGGTC+AGG - chr1.2:31360718-31360737 None:intergenic 75.0%
CAACCCTGACCCCGACGCGG+AGG + chr1.2:31360711-31360730 MS.gene41316:CDS 75.0%
CTCCGCGTCGGGGTCAGGGT+TGG - chr1.2:31360713-31360732 None:intergenic 75.0%
GCCTCCGGGTGAGACGACGG+AGG - chr1.2:31360920-31360939 None:intergenic 75.0%
GGTCCTCCGCGTCGGGGTCA+GGG - chr1.2:31360717-31360736 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 31360622 31361641 31360622 ID=MS.gene41316
chr1.2 mRNA 31360622 31361641 31360622 ID=MS.gene41316.t1;Parent=MS.gene41316
chr1.2 exon 31360622 31361641 31360622 ID=MS.gene41316.t1.exon1;Parent=MS.gene41316.t1
chr1.2 CDS 31360622 31361641 31360622 ID=cds.MS.gene41316.t1;Parent=MS.gene41316.t1
Gene Sequence

>MS.gene41316

ATGTCAAAATTACGAGTTCTGATCGTCTTGTTATTTGCTCTCTTAATCACTCTCTTCTTTTTCTCCCCTCAATCTTACTTCCCGTTTTCCAACCCTGACCCCGACGCGGAGGACCTTGCTCTCTTCCGCCGCGCCACAAGGACAACACCCCACTTATTTACCTTCAAGAACCCTAAACCCAAAATCGCCTTCCTCTTCCTAACAAATACCAACCTCACCTTTGCTCCTTTATGGGAAATATTCTTTGCCGGAAACAACCACCTCTTCAACATCTACATCCACGCAGATCCCGTTTCCTCCGTCGTCTCACCCGGAGGCGTCTTCCATCAAAGCCACTTCATCCCTTCCAAAACAACCCAACGTGCCTCTCCGTCACTTATAGCCGCTGCTCGCCGTCTCTTAGCCACTGCTATATTGGATGACCCACATAACCAATACTTTGCCTTACTCTCCCAACATTGTATTCCACTCTTCTCGTTTCGATTTGTTTATAACTCCCTTTTTGAAAATCCGGTAGAGTCCTTAAACAAGTACAAGATTCAACACCCTAGCTTCATTGAGATTGACTCTAAACATCCGAATCTCTACCAGCGCTATAATGCTCGTGGAAAGGATGTAATGATGCCGGAGGTTTCATTCAAGGATTTTCGCAAAGGCTCGCAGTTCTTTATCCTGAACCGGAACCATGCAAAGGTTGTTCTGCGAGATCAAAAGTTGTGGAAGAAGTTTCGGATTCCATGTATAGATACGCATTCCTGTTACCCAGAAGAGCATTACTTTCCGACTCTTCTGTCGATGGAGGATCCGGATGGCTGCGCTGGTTTTACTCTTACGAGAGTTAACTGGACTGGTTGTACGGATCACCCGCATCTTTATACTCGAGAGGAGGTGTCTCCGGAGCTTGTACGCCAGCTTAGAAAATCAAAATCCAGTTATTCCTATCTGTTTGCAAGGAAATTCTCACCGGAAACTCTAGCGCCGTTGATGGATATGGCTTACGATGTCATTTTCCGAGATTGA
Protein sequence

>MS.gene41316.t1

MSKLRVLIVLLFALLITLFFFSPQSYFPFSNPDPDAEDLALFRRATRTTPHLFTFKNPKPKIAFLFLTNTNLTFAPLWEIFFAGNNHLFNIYIHADPVSSVVSPGGVFHQSHFIPSKTTQRASPSLIAAARRLLATAILDDPHNQYFALLSQHCIPLFSFRFVYNSLFENPVESLNKYKIQHPSFIEIDSKHPNLYQRYNARGKDVMMPEVSFKDFRKGSQFFILNRNHAKVVLRDQKLWKKFRIPCIDTHSCYPEEHYFPTLLSMEDPDGCAGFTLTRVNWTGCTDHPHLYTREEVSPELVRQLRKSKSSYSYLFARKFSPETLAPLMDMAYDVIFRD