Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41459.t1 | XP_013460469.1 | 93.3 | 224 | 15 | 0 | 1 | 224 | 1 | 224 | 2.90E-121 | 444.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41459.t1 | P25317 | 67.1 | 219 | 72 | 0 | 5 | 223 | 1 | 219 | 1.7e-85 | 317.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41459.t1 | I3SI44 | 93.3 | 224 | 15 | 0 | 1 | 224 | 1 | 224 | 2.1e-121 | 444.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene41459 | 0.806403 | 8.37E-50 | -1.69E-46 |
| MS.gene055549 | MS.gene41459 | 0.820155 | 7.97E-53 | -1.69E-46 |
| MS.gene055550 | MS.gene41459 | 0.811427 | 7.04E-51 | -1.69E-46 |
| MS.gene055551 | MS.gene41459 | 0.802268 | 6.08E-49 | -1.69E-46 |
| MS.gene056311 | MS.gene41459 | 0.828722 | 7.67E-55 | -1.69E-46 |
| MS.gene056530 | MS.gene41459 | 0.826618 | 2.46E-54 | -1.69E-46 |
| MS.gene058493 | MS.gene41459 | 0.817499 | 3.19E-52 | -1.69E-46 |
| MS.gene058494 | MS.gene41459 | 0.851433 | 8.91E-61 | -1.69E-46 |
| MS.gene058496 | MS.gene41459 | 0.813505 | 2.47E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41459.t1 | MTR_3g467430 | 93.304 | 224 | 15 | 0 | 1 | 224 | 1 | 224 | 2.89e-157 | 434 |
| MS.gene41459.t1 | MTR_3g467420 | 87.054 | 224 | 29 | 0 | 1 | 224 | 1 | 224 | 1.62e-146 | 407 |
| MS.gene41459.t1 | MTR_2g070150 | 64.356 | 202 | 72 | 0 | 8 | 209 | 3 | 204 | 3.41e-96 | 279 |
| MS.gene41459.t1 | MTR_2g070180 | 60.849 | 212 | 83 | 0 | 8 | 219 | 3 | 214 | 5.85e-96 | 279 |
| MS.gene41459.t1 | MTR_2g070130 | 59.908 | 217 | 87 | 0 | 8 | 224 | 3 | 219 | 2.46e-95 | 278 |
| MS.gene41459.t1 | MTR_2g070140 | 62.562 | 203 | 76 | 0 | 22 | 224 | 1 | 203 | 4.81e-95 | 276 |
| MS.gene41459.t1 | MTR_2g070210 | 60.731 | 219 | 84 | 1 | 8 | 224 | 3 | 221 | 1.59e-93 | 273 |
| MS.gene41459.t1 | MTR_2g070070 | 59.908 | 217 | 87 | 0 | 8 | 224 | 3 | 219 | 4.02e-91 | 267 |
| MS.gene41459.t1 | MTR_2g070060 | 56.682 | 217 | 94 | 0 | 8 | 224 | 3 | 219 | 4.11e-91 | 267 |
| MS.gene41459.t1 | MTR_2g070110 | 58.065 | 217 | 90 | 1 | 8 | 224 | 3 | 218 | 2.41e-88 | 260 |
| MS.gene41459.t1 | MTR_2g070200 | 59.361 | 219 | 87 | 2 | 8 | 224 | 3 | 221 | 8.59e-88 | 258 |
| MS.gene41459.t1 | MTR_4g124130 | 54.795 | 219 | 98 | 1 | 7 | 224 | 2 | 220 | 1.04e-86 | 256 |
| MS.gene41459.t1 | MTR_2g070120 | 56.075 | 214 | 94 | 0 | 8 | 221 | 3 | 216 | 1.14e-86 | 256 |
| MS.gene41459.t1 | MTR_8g056940 | 53.917 | 217 | 100 | 0 | 8 | 224 | 3 | 219 | 2.46e-86 | 255 |
| MS.gene41459.t1 | MTR_5g076900 | 49.541 | 218 | 108 | 2 | 8 | 224 | 5 | 221 | 6.58e-74 | 223 |
| MS.gene41459.t1 | MTR_0186s0030 | 56.835 | 139 | 60 | 0 | 8 | 146 | 3 | 141 | 3.75e-53 | 168 |
| MS.gene41459.t1 | MTR_5g037380 | 42.727 | 220 | 117 | 4 | 5 | 215 | 1 | 220 | 1.76e-48 | 159 |
| MS.gene41459.t1 | MTR_7g065720 | 42.453 | 212 | 116 | 5 | 6 | 213 | 4 | 213 | 2.57e-47 | 155 |
| MS.gene41459.t1 | MTR_7g065270 | 42.788 | 208 | 113 | 6 | 6 | 210 | 4 | 208 | 3.21e-46 | 153 |
| MS.gene41459.t1 | MTR_8g061950 | 38.197 | 233 | 127 | 5 | 5 | 223 | 1 | 230 | 8.42e-45 | 149 |
| MS.gene41459.t1 | MTR_7g065660 | 39.810 | 211 | 122 | 4 | 6 | 213 | 4 | 212 | 9.40e-45 | 149 |
| MS.gene41459.t1 | MTR_4g019780 | 40.465 | 215 | 115 | 7 | 6 | 213 | 5 | 213 | 8.42e-44 | 146 |
| MS.gene41459.t1 | MTR_7g065740 | 40.566 | 212 | 120 | 4 | 6 | 213 | 4 | 213 | 2.72e-43 | 145 |
| MS.gene41459.t1 | MTR_7g065265 | 41.096 | 219 | 124 | 5 | 6 | 221 | 4 | 220 | 3.09e-43 | 145 |
| MS.gene41459.t1 | MTR_7g065290 | 39.726 | 219 | 127 | 5 | 6 | 221 | 4 | 220 | 9.09e-43 | 144 |
| MS.gene41459.t1 | MTR_8g087425 | 38.288 | 222 | 133 | 3 | 5 | 223 | 1 | 221 | 1.45e-42 | 144 |
| MS.gene41459.t1 | MTR_3g099757 | 46.746 | 169 | 89 | 1 | 5 | 173 | 1 | 168 | 1.60e-42 | 143 |
| MS.gene41459.t1 | MTR_1g090060 | 40.385 | 208 | 119 | 3 | 10 | 213 | 4 | 210 | 2.39e-42 | 143 |
| MS.gene41459.t1 | MTR_7g065750 | 41.748 | 206 | 110 | 5 | 6 | 205 | 4 | 205 | 4.00e-41 | 140 |
| MS.gene41459.t1 | MTR_7g065590 | 37.900 | 219 | 117 | 6 | 5 | 213 | 3 | 212 | 4.09e-41 | 140 |
| MS.gene41459.t1 | MTR_4g019790 | 38.318 | 214 | 125 | 5 | 5 | 213 | 1 | 212 | 1.98e-40 | 138 |
| MS.gene41459.t1 | MTR_1g090150 | 40.376 | 213 | 108 | 8 | 8 | 210 | 2 | 205 | 6.17e-40 | 137 |
| MS.gene41459.t1 | MTR_7g065230 | 40.385 | 208 | 115 | 6 | 6 | 211 | 4 | 204 | 1.03e-39 | 136 |
| MS.gene41459.t1 | MTR_5g040430 | 34.300 | 207 | 128 | 3 | 10 | 209 | 8 | 213 | 1.09e-39 | 136 |
| MS.gene41459.t1 | MTR_4g059730 | 39.171 | 217 | 127 | 3 | 8 | 220 | 3 | 218 | 1.66e-39 | 135 |
| MS.gene41459.t1 | MTR_1g090070 | 39.320 | 206 | 115 | 5 | 16 | 214 | 16 | 218 | 3.40e-39 | 135 |
| MS.gene41459.t1 | MTR_7g065630 | 36.967 | 211 | 124 | 5 | 6 | 213 | 22 | 226 | 5.55e-39 | 135 |
| MS.gene41459.t1 | MTR_7g065600 | 38.916 | 203 | 119 | 4 | 6 | 205 | 4 | 204 | 6.51e-39 | 134 |
| MS.gene41459.t1 | MTR_1g090100 | 39.524 | 210 | 122 | 3 | 9 | 214 | 2 | 210 | 9.44e-39 | 134 |
| MS.gene41459.t1 | MTR_8g087410 | 39.901 | 203 | 119 | 2 | 5 | 205 | 2 | 203 | 1.25e-38 | 133 |
| MS.gene41459.t1 | MTR_7g065710 | 38.049 | 205 | 122 | 4 | 10 | 213 | 5 | 205 | 2.83e-38 | 132 |
| MS.gene41459.t1 | MTR_6g080440 | 38.235 | 204 | 112 | 6 | 23 | 217 | 17 | 215 | 1.61e-37 | 130 |
| MS.gene41459.t1 | MTR_7g065260 | 41.872 | 203 | 113 | 5 | 6 | 205 | 11 | 211 | 5.91e-37 | 129 |
| MS.gene41459.t1 | MTR_1g090090 | 38.942 | 208 | 122 | 4 | 10 | 213 | 4 | 210 | 1.59e-36 | 128 |
| MS.gene41459.t1 | MTR_7g065640 | 36.190 | 210 | 113 | 5 | 6 | 213 | 4 | 194 | 1.81e-35 | 125 |
| MS.gene41459.t1 | MTR_1g115195 | 39.303 | 201 | 116 | 5 | 10 | 205 | 4 | 203 | 2.65e-35 | 125 |
| MS.gene41459.t1 | MTR_7g065700 | 38.942 | 208 | 122 | 5 | 7 | 213 | 5 | 208 | 4.82e-35 | 124 |
| MS.gene41459.t1 | MTR_7g065680 | 37.321 | 209 | 122 | 5 | 8 | 213 | 6 | 208 | 1.98e-34 | 122 |
| MS.gene41459.t1 | MTR_2g072120 | 61.765 | 68 | 26 | 0 | 52 | 119 | 1 | 68 | 1.93e-25 | 95.1 |
| MS.gene41459.t1 | MTR_7g100320 | 30.303 | 198 | 121 | 8 | 20 | 210 | 37 | 224 | 7.52e-15 | 71.2 |
| MS.gene41459.t1 | MTR_4g043640 | 60.000 | 40 | 16 | 0 | 155 | 194 | 46 | 85 | 2.79e-12 | 60.8 |
| MS.gene41459.t1 | MTR_5g037390 | 46.575 | 73 | 37 | 1 | 33 | 103 | 11 | 83 | 6.23e-12 | 60.5 |
| MS.gene41459.t1 | MTR_1g067180 | 30.247 | 162 | 92 | 8 | 57 | 210 | 77 | 225 | 6.80e-12 | 63.2 |
| MS.gene41459.t1 | MTR_1g067180 | 30.247 | 162 | 92 | 8 | 57 | 210 | 74 | 222 | 6.83e-12 | 63.2 |
| MS.gene41459.t1 | MTR_1g067180 | 33.813 | 139 | 77 | 7 | 57 | 190 | 77 | 205 | 2.46e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41459.t1 | AT1G17180 | 64.055 | 217 | 78 | 0 | 8 | 224 | 3 | 219 | 1.88e-100 | 291 |
| MS.gene41459.t1 | AT1G78370 | 59.716 | 211 | 85 | 0 | 11 | 221 | 6 | 216 | 1.86e-98 | 285 |
| MS.gene41459.t1 | AT1G78380 | 61.033 | 213 | 83 | 0 | 8 | 220 | 3 | 215 | 1.24e-97 | 283 |
| MS.gene41459.t1 | AT1G17170 | 62.673 | 217 | 80 | 1 | 8 | 224 | 3 | 218 | 2.57e-95 | 278 |
| MS.gene41459.t1 | AT1G78360 | 58.796 | 216 | 88 | 1 | 10 | 224 | 5 | 220 | 2.20e-90 | 265 |
| MS.gene41459.t1 | AT1G78340 | 55.660 | 212 | 94 | 0 | 8 | 219 | 3 | 214 | 6.91e-88 | 259 |
| MS.gene41459.t1 | AT1G53680 | 57.143 | 217 | 91 | 2 | 10 | 224 | 8 | 224 | 2.38e-87 | 258 |
| MS.gene41459.t1 | AT1G78320 | 58.333 | 204 | 85 | 0 | 7 | 210 | 2 | 205 | 7.51e-83 | 246 |
| MS.gene41459.t1 | AT1G17190 | 52.294 | 218 | 104 | 0 | 5 | 222 | 1 | 218 | 7.23e-81 | 241 |
| MS.gene41459.t1 | AT3G43800 | 52.036 | 221 | 102 | 3 | 5 | 221 | 1 | 221 | 1.11e-75 | 228 |
| MS.gene41459.t1 | AT1G78320 | 50.490 | 204 | 74 | 1 | 7 | 210 | 2 | 178 | 3.12e-65 | 200 |
| MS.gene41459.t1 | AT1G10360 | 44.037 | 218 | 114 | 4 | 5 | 214 | 1 | 218 | 3.13e-51 | 166 |
| MS.gene41459.t1 | AT2G29420 | 39.614 | 207 | 122 | 3 | 1 | 205 | 1 | 206 | 2.79e-47 | 155 |
| MS.gene41459.t1 | AT1G59700 | 42.466 | 219 | 111 | 6 | 7 | 213 | 4 | 219 | 7.18e-47 | 155 |
| MS.gene41459.t1 | AT3G09270 | 40.284 | 211 | 120 | 5 | 5 | 210 | 1 | 210 | 1.09e-46 | 154 |
| MS.gene41459.t1 | AT1G10370 | 41.743 | 218 | 119 | 4 | 5 | 214 | 1 | 218 | 1.25e-46 | 154 |
| MS.gene41459.t1 | AT1G74590 | 36.444 | 225 | 127 | 5 | 7 | 220 | 5 | 224 | 3.59e-43 | 145 |
| MS.gene41459.t1 | AT5G62480 | 39.906 | 213 | 117 | 5 | 7 | 209 | 6 | 217 | 5.14e-43 | 145 |
| MS.gene41459.t1 | AT1G59670 | 37.668 | 223 | 130 | 5 | 7 | 220 | 4 | 226 | 2.08e-40 | 138 |
| MS.gene41459.t1 | AT1G69930 | 34.842 | 221 | 137 | 3 | 1 | 214 | 4 | 224 | 2.68e-40 | 138 |
| MS.gene41459.t1 | AT1G27130 | 35.000 | 220 | 134 | 4 | 6 | 216 | 3 | 222 | 2.50e-39 | 135 |
| MS.gene41459.t1 | AT2G29490 | 38.647 | 207 | 113 | 5 | 7 | 205 | 5 | 205 | 4.58e-39 | 134 |
| MS.gene41459.t1 | AT2G29480 | 39.130 | 207 | 112 | 6 | 7 | 205 | 5 | 205 | 8.24e-39 | 134 |
| MS.gene41459.t1 | AT2G29440 | 37.073 | 205 | 117 | 4 | 8 | 205 | 5 | 204 | 1.40e-38 | 133 |
| MS.gene41459.t1 | AT2G29450 | 37.615 | 218 | 124 | 5 | 7 | 217 | 4 | 216 | 7.75e-38 | 131 |
| MS.gene41459.t1 | AT1G27140 | 35.000 | 220 | 133 | 4 | 7 | 216 | 4 | 223 | 2.53e-37 | 130 |
| MS.gene41459.t1 | AT2G29470 | 35.780 | 218 | 126 | 6 | 7 | 212 | 5 | 220 | 8.33e-35 | 124 |
| MS.gene41459.t1 | AT2G29460 | 37.438 | 203 | 121 | 4 | 7 | 205 | 5 | 205 | 7.69e-34 | 121 |
| MS.gene41459.t1 | AT1G69920 | 31.111 | 225 | 142 | 5 | 1 | 214 | 26 | 248 | 2.43e-33 | 120 |
| MS.gene41459.t1 | AT5G62480 | 31.925 | 213 | 108 | 6 | 7 | 209 | 6 | 191 | 9.74e-24 | 94.7 |
| MS.gene41459.t1 | AT5G62480 | 31.925 | 213 | 107 | 6 | 7 | 209 | 6 | 190 | 1.04e-23 | 94.7 |
| MS.gene41459.t1 | AT5G02780 | 32.222 | 180 | 108 | 9 | 20 | 193 | 41 | 212 | 2.43e-11 | 61.6 |
| MS.gene41459.t1 | AT5G02780 | 32.222 | 180 | 108 | 9 | 20 | 193 | 41 | 212 | 2.43e-11 | 61.6 |
| MS.gene41459.t1 | AT5G02780 | 30.726 | 179 | 110 | 8 | 20 | 193 | 41 | 210 | 5.89e-11 | 60.8 |
Find 39 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTAAAAGCAAAGAGCTTT+TGG | 0.241811 | 3.1:-52171712 | None:intergenic |
| AACGATCACAAGCCAAGTTT+TGG | 0.283238 | 3.1:+52171868 | MS.gene41459:CDS |
| TTTCCATTATGAATCAAAAC+TGG | 0.283886 | 3.1:-52171759 | None:intergenic |
| GGACTTTGGGTATGTTGATT+TGG | 0.292343 | 3.1:+52173173 | MS.gene41459:CDS |
| CTCTTATTCCCTTCACTAGC+TGG | 0.300840 | 3.1:+52173196 | MS.gene41459:CDS |
| AAGTCCTCTCCATCAAAATA+TGG | 0.350775 | 3.1:-52173156 | None:intergenic |
| CCTCACCCTCACAAAATCTA+TGG | 0.351679 | 3.1:+52173327 | MS.gene41459:CDS |
| AATGAGTCAATACATGAATA+AGG | 0.357060 | 3.1:+52171581 | None:intergenic |
| TATATTAAGTGATTCACATA+TGG | 0.358906 | 3.1:-52171784 | None:intergenic |
| TTGGCTTGTGATCGTTTGTA+AGG | 0.383467 | 3.1:-52171861 | None:intergenic |
| TTTACACTTACGAGATATAT+GGG | 0.406047 | 3.1:+52173220 | MS.gene41459:CDS |
| GTGTCCTAAGCTTGTAGCTT+GGG | 0.417667 | 3.1:+52173263 | MS.gene41459:CDS |
| TTGGCCCAAGCTACAAGCTT+AGG | 0.422848 | 3.1:-52173267 | None:intergenic |
| ATATTAAGTGATTCACATAT+GGG | 0.451582 | 3.1:-52171783 | None:intergenic |
| AGCTTGTAGCTTGGGCCAAA+AGG | 0.454879 | 3.1:+52173271 | MS.gene41459:CDS |
| AATGAGAGTGAAAATTGCTT+TGG | 0.455938 | 3.1:+52171644 | MS.gene41459:CDS |
| TTGAGTACATTGATGAGTCT+TGG | 0.462075 | 3.1:+52171808 | MS.gene41459:CDS |
| AATGTAATCTCCCCAAAACT+TGG | 0.487995 | 3.1:-52171880 | None:intergenic |
| AAAATTGCTTTGGAAGAGAA+GGG | 0.495397 | 3.1:+52171654 | MS.gene41459:CDS |
| AGCTTGGGCCAAAAGGTGTA+TGG | 0.501382 | 3.1:+52173278 | MS.gene41459:CDS |
| GAAAATTGCTTTGGAAGAGA+AGG | 0.505025 | 3.1:+52171653 | MS.gene41459:CDS |
| ACTCTCATTGCATATACGCT+TGG | 0.513803 | 3.1:-52171630 | None:intergenic |
| AGGAAAGGTTGAAGAACAAG+AGG | 0.520776 | 3.1:+52173074 | MS.gene41459:CDS |
| AAGACTCTAGAAGATGAGCT+TGG | 0.522791 | 3.1:+52173126 | MS.gene41459:CDS |
| ACAGCATTCGAAGGAAGCTA+TGG | 0.529203 | 3.1:+52173049 | MS.gene41459:CDS |
| AGTGTCCTAAGCTTGTAGCT+TGG | 0.541196 | 3.1:+52173262 | MS.gene41459:CDS |
| AAGGTTGAAGAACAAGAGGA+AGG | 0.559445 | 3.1:+52173078 | MS.gene41459:CDS |
| TTCCATTATGAATCAAAACT+GGG | 0.561423 | 3.1:-52171758 | None:intergenic |
| TGATCGTTTGTAAGGGTCAG+AGG | 0.563474 | 3.1:-52171853 | None:intergenic |
| ATGCAATATAAACAGAAGCA+TGG | 0.572571 | 3.1:+52173357 | MS.gene41459:CDS |
| AGTGTAAAACCAGCTAGTGA+AGG | 0.578821 | 3.1:-52173205 | None:intergenic |
| TGGCTTGTGATCGTTTGTAA+GGG | 0.580270 | 3.1:-52171860 | None:intergenic |
| GTGTAAAACCAGCTAGTGAA+GGG | 0.589018 | 3.1:-52173204 | None:intergenic |
| GGGTCAGAGGGCAAAAGAGA+AGG | 0.589806 | 3.1:-52171840 | None:intergenic |
| CGTAGGTATACAGCATTCGA+AGG | 0.619438 | 3.1:+52173040 | MS.gene41459:intron |
| GATCGTTTGTAAGGGTCAGA+GGG | 0.625238 | 3.1:-52171852 | None:intergenic |
| ATTCGAAGGAAGCTATGGAA+AGG | 0.640495 | 3.1:+52173054 | MS.gene41459:CDS |
| AAGGAAGCTATGGAAAGGAA+AGG | 0.650275 | 3.1:+52173059 | MS.gene41459:CDS |
| ATACATGAATAAGGACAGTG+TGG | 0.750539 | 3.1:+52171590 | MS.gene41459:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGATTACATAATAATTTTA+AGG | + | chr3.1:52172612-52172631 | MS.gene41459:intron | 10.0% |
| !!! | TATTTGTATGTTTTTATATA+TGG | + | chr3.1:52171987-52172006 | MS.gene41459:intron | 10.0% |
| !!! | TTAAAAAAAGTTTTATTCAT+AGG | + | chr3.1:52172983-52173002 | MS.gene41459:intron | 10.0% |
| !! | AAAATATGGTTCAATATTTA+TGG | - | chr3.1:52172798-52172817 | None:intergenic | 15.0% |
| !! | ATAACCTTTAATAATAAATG+AGG | - | chr3.1:52172565-52172584 | None:intergenic | 15.0% |
| !! | CATTTATTATTAAAGGTTAT+TGG | + | chr3.1:52172565-52172584 | MS.gene41459:intron | 15.0% |
| !! | TAAGGTTAACTAAAAAAATT+AGG | - | chr3.1:52172081-52172100 | None:intergenic | 15.0% |
| !!! | ATCTACTTTTATTTGAATAA+AGG | - | chr3.1:52172597-52172616 | None:intergenic | 15.0% |
| !!! | TCTACTTTTATTTGAATAAA+GGG | - | chr3.1:52172596-52172615 | None:intergenic | 15.0% |
| !!! | TGTATGTTTGATTTTAATTT+TGG | - | chr3.1:52172759-52172778 | None:intergenic | 15.0% |
| !! | ACATACTAGAAATATAGTAA+AGG | + | chr3.1:52172913-52172932 | MS.gene41459:intron | 20.0% |
| !! | ATATACTAGTTGACAAAATA+TGG | - | chr3.1:52172812-52172831 | None:intergenic | 20.0% |
| !! | ATATTAAGTGATTCACATAT+GGG | - | chr3.1:52171786-52171805 | None:intergenic | 20.0% |
| !! | ATGGATAATAATGTAAAAGT+GGG | - | chr3.1:52172853-52172872 | None:intergenic | 20.0% |
| !! | TATATTAAGTGATTCACATA+TGG | - | chr3.1:52171787-52171806 | None:intergenic | 20.0% |
| !! | TATGGATAATAATGTAAAAG+TGG | - | chr3.1:52172854-52172873 | None:intergenic | 20.0% |
| !! | TGAATATATTATTGCAATGT+CGG | + | chr3.1:52172421-52172440 | MS.gene41459:intron | 20.0% |
| !!! | AAGTTAACATTTGTAGTTTT+TGG | - | chr3.1:52172657-52172676 | None:intergenic | 20.0% |
| !!! | ATATTATGGCTTAATTTTGT+TGG | + | chr3.1:52173006-52173025 | MS.gene41459:intron | 20.0% |
| !!! | ATGTTTGATTTTAATTTTGG+AGG | - | chr3.1:52172756-52172775 | None:intergenic | 20.0% |
| !!! | GTTTTATTCATAGGATATTA+TGG | + | chr3.1:52172992-52173011 | MS.gene41459:intron | 20.0% |
| !!! | TAAAGATATAGAATTGACTT+TGG | - | chr3.1:52172718-52172737 | None:intergenic | 20.0% |
| !!! | TGTTTGATTTTAATTTTGGA+GGG | - | chr3.1:52172755-52172774 | None:intergenic | 20.0% |
| ! | ACATTATTATCCATACTTCA+AGG | + | chr3.1:52172859-52172878 | MS.gene41459:intron | 25.0% |
| ! | AGAATTCAGTAGTTTAGATT+GGG | - | chr3.1:52172025-52172044 | None:intergenic | 25.0% |
| ! | ATATGGTTCAATATTTATGG+CGG | - | chr3.1:52172795-52172814 | None:intergenic | 25.0% |
| ! | CCTATATTCGAAAAATACTT+AGG | + | chr3.1:52172188-52172207 | MS.gene41459:intron | 25.0% |
| ! | GCAATTGATTATGACTAAAA+GGG | + | chr3.1:52172373-52172392 | MS.gene41459:intron | 25.0% |
| ! | GGTAAAAAGAAGTTTATAGA+AGG | + | chr3.1:52173099-52173118 | MS.gene41459:CDS | 25.0% |
| ! | TACGCCTCATTTATTATTAA+AGG | + | chr3.1:52172558-52172577 | MS.gene41459:intron | 25.0% |
| ! | TAGAATTCAGTAGTTTAGAT+TGG | - | chr3.1:52172026-52172045 | None:intergenic | 25.0% |
| ! | TGCAATTGATTATGACTAAA+AGG | + | chr3.1:52172372-52172391 | MS.gene41459:intron | 25.0% |
| ! | TTCCATTATGAATCAAAACT+GGG | - | chr3.1:52171761-52171780 | None:intergenic | 25.0% |
| ! | TTTACACTTACGAGATATAT+GGG | + | chr3.1:52173220-52173239 | MS.gene41459:CDS | 25.0% |
| ! | TTTCCATTATGAATCAAAAC+TGG | - | chr3.1:52171762-52171781 | None:intergenic | 25.0% |
| !! | TTTTACACTTACGAGATATA+TGG | + | chr3.1:52173219-52173238 | MS.gene41459:CDS | 25.0% |
| !!! | CCTAAGTATTTTTCGAATAT+AGG | - | chr3.1:52172191-52172210 | None:intergenic | 25.0% |
| !!! | CTTTTATTTGAATAAAGGGA+TGG | - | chr3.1:52172592-52172611 | None:intergenic | 25.0% |
| !!! | GTTTGATTTTAATTTTGGAG+GGG | - | chr3.1:52172754-52172773 | None:intergenic | 25.0% |
| AATGAGAGTGAAAATTGCTT+TGG | + | chr3.1:52171644-52171663 | MS.gene41459:CDS | 30.0% | |
| ATGCAATATAAACAGAAGCA+TGG | + | chr3.1:52173357-52173376 | MS.gene41459:CDS | 30.0% | |
| GATACTTCACACTAATAGTA+AGG | - | chr3.1:52172099-52172118 | None:intergenic | 30.0% | |
| GATTAGTAAGACAAAATCAG+AGG | - | chr3.1:52172121-52172140 | None:intergenic | 30.0% | |
| GTCATAATCAATTGCAATGT+CGG | - | chr3.1:52172368-52172387 | None:intergenic | 30.0% | |
| ! | AAAGGCCATAAAGTCAATTT+TGG | + | chr3.1:52172931-52172950 | MS.gene41459:intron | 30.0% |
| ! | ACACACCAAAATTGACTTTA+TGG | - | chr3.1:52172939-52172958 | None:intergenic | 30.0% |
| ! | CAAATCCATAGATTTTGTGA+GGG | - | chr3.1:52173335-52173354 | None:intergenic | 30.0% |
| ! | TTTGATGATCACTTTGTGTT+TGG | - | chr3.1:52172337-52172356 | None:intergenic | 30.0% |
| !! | AAAATTGCTTTGGAAGAGAA+GGG | + | chr3.1:52171654-52171673 | MS.gene41459:CDS | 30.0% |
| !! | CTAATCTCCTTTTGAGAATT+TGG | + | chr3.1:52172135-52172154 | MS.gene41459:intron | 30.0% |
| !!! | ACTTAGGTGATTTTGAGATT+TGG | + | chr3.1:52172204-52172223 | MS.gene41459:intron | 30.0% |
| !!! | ATCCCAGTTTTGATTCATAA+TGG | + | chr3.1:52171756-52171775 | MS.gene41459:CDS | 30.0% |
| AAGTCCTCTCCATCAAAATA+TGG | - | chr3.1:52173159-52173178 | None:intergenic | 35.0% | |
| AATGTAATCTCCCCAAAACT+TGG | - | chr3.1:52171883-52171902 | None:intergenic | 35.0% | |
| ATACATGAATAAGGACAGTG+TGG | + | chr3.1:52171590-52171609 | MS.gene41459:CDS | 35.0% | |
| ATTCAGTAGTTTAGATTGGG+AGG | - | chr3.1:52172022-52172041 | None:intergenic | 35.0% | |
| TGTTGGATTCTAATTGACGT+AGG | + | chr3.1:52173023-52173042 | MS.gene41459:intron | 35.0% | |
| TTGAGTACATTGATGAGTCT+TGG | + | chr3.1:52171808-52171827 | MS.gene41459:CDS | 35.0% | |
| ! | ACTGGGATCTTTTTGTAAAC+CGG | - | chr3.1:52171744-52171763 | None:intergenic | 35.0% |
| ! | CTCTTTTTCCATACACCTTT+TGG | - | chr3.1:52173289-52173308 | None:intergenic | 35.0% |
| ! | GCAAATCCATAGATTTTGTG+AGG | - | chr3.1:52173336-52173355 | None:intergenic | 35.0% |
| ! | TTTTCGAATATAGGTGAGAG+TGG | - | chr3.1:52172182-52172201 | None:intergenic | 35.0% |
| !! | ATTTTGATGGAGAGGACTTT+GGG | + | chr3.1:52173160-52173179 | MS.gene41459:CDS | 35.0% |
| !! | CTCTAAAAGCAAAGAGCTTT+TGG | - | chr3.1:52171715-52171734 | None:intergenic | 35.0% |
| !! | GAAAATTGCTTTGGAAGAGA+AGG | + | chr3.1:52171653-52171672 | MS.gene41459:CDS | 35.0% |
| !! | TTTGCTTTTAGAGATGAACC+CGG | + | chr3.1:52171722-52171741 | MS.gene41459:CDS | 35.0% |
| !!! | GTGTGGTTTTGTTGGATTTT+TGG | + | chr3.1:52171607-52171626 | MS.gene41459:CDS | 35.0% |
| !!! | TATTTTGATGGAGAGGACTT+TGG | + | chr3.1:52173159-52173178 | MS.gene41459:CDS | 35.0% |
| AAGGAAGCTATGGAAAGGAA+AGG | + | chr3.1:52173059-52173078 | MS.gene41459:CDS | 40.0% | |
| AAGGTTGAAGAACAAGAGGA+AGG | + | chr3.1:52173078-52173097 | MS.gene41459:CDS | 40.0% | |
| ACTCTCATTGCATATACGCT+TGG | - | chr3.1:52171633-52171652 | None:intergenic | 40.0% | |
| AGGAAAGGTTGAAGAACAAG+AGG | + | chr3.1:52173074-52173093 | MS.gene41459:CDS | 40.0% | |
| AGTGTAAAACCAGCTAGTGA+AGG | - | chr3.1:52173208-52173227 | None:intergenic | 40.0% | |
| ATTCGAAGGAAGCTATGGAA+AGG | + | chr3.1:52173054-52173073 | MS.gene41459:CDS | 40.0% | |
| CAAAGTGATCATCAAACCCT+TGG | + | chr3.1:52172341-52172360 | MS.gene41459:intron | 40.0% | |
| GTGTAAAACCAGCTAGTGAA+GGG | - | chr3.1:52173207-52173226 | None:intergenic | 40.0% | |
| GTGTATGGAAAAAGAGAGTG+TGG | + | chr3.1:52173293-52173312 | MS.gene41459:CDS | 40.0% | |
| TAAAGTGAGAGTCTTACCCT+CGG | - | chr3.1:52172448-52172467 | None:intergenic | 40.0% | |
| ! | AACGATCACAAGCCAAGTTT+TGG | + | chr3.1:52171868-52171887 | MS.gene41459:CDS | 40.0% |
| ! | AAGACTCTAGAAGATGAGCT+TGG | + | chr3.1:52173126-52173145 | MS.gene41459:CDS | 40.0% |
| ! | AATTTGGCTAGCCACATTTG+TGG | + | chr3.1:52172151-52172170 | MS.gene41459:intron | 40.0% |
| ! | ACGATCACAAGCCAAGTTTT+GGG | + | chr3.1:52171869-52171888 | MS.gene41459:CDS | 40.0% |
| ! | AGGGCAAAAGAGAAGGTTTT+TGG | - | chr3.1:52171836-52171855 | None:intergenic | 40.0% |
| ! | ATTTGGCTAGCCACATTTGT+GGG | + | chr3.1:52172152-52172171 | MS.gene41459:intron | 40.0% |
| ! | CTGGGATCTTTTTGTAAACC+GGG | - | chr3.1:52171743-52171762 | None:intergenic | 40.0% |
| ! | CTTTCATGTGATTGCCACTT+GGG | - | chr3.1:52172892-52172911 | None:intergenic | 40.0% |
| ! | GGACTTTGGGTATGTTGATT+TGG | + | chr3.1:52173173-52173192 | MS.gene41459:CDS | 40.0% |
| ! | TGGCTAGCCAAATTCTCAAA+AGG | - | chr3.1:52172145-52172164 | None:intergenic | 40.0% |
| ! | TGGCTTGTGATCGTTTGTAA+GGG | - | chr3.1:52171863-52171882 | None:intergenic | 40.0% |
| !! | GGAGACAAGCCATATTTTGA+TGG | + | chr3.1:52173147-52173166 | MS.gene41459:CDS | 40.0% |
| !! | TTGGCTTGTGATCGTTTGTA+AGG | - | chr3.1:52171864-52171883 | None:intergenic | 40.0% |
| !!! | CAAGCCATATTTTGATGGAG+AGG | + | chr3.1:52173152-52173171 | MS.gene41459:CDS | 40.0% |
| !!! | TAAGGACAGTGTGGTTTTGT+TGG | + | chr3.1:52171599-52171618 | MS.gene41459:CDS | 40.0% |
| ACAGCATTCGAAGGAAGCTA+TGG | + | chr3.1:52173049-52173068 | MS.gene41459:CDS | 45.0% | |
| AGTGTCCTAAGCTTGTAGCT+TGG | + | chr3.1:52173262-52173281 | MS.gene41459:CDS | 45.0% | |
| ATTATTGCAATGTCGGACCG+AGG | + | chr3.1:52172428-52172447 | MS.gene41459:intron | 45.0% | |
| CAATTGCAATGTCGGACCAA+GGG | - | chr3.1:52172360-52172379 | None:intergenic | 45.0% | |
| CCAAGTGGCAATCACATGAA+AGG | + | chr3.1:52172890-52172909 | MS.gene41459:intron | 45.0% | |
| CCTCACCCTCACAAAATCTA+TGG | + | chr3.1:52173327-52173346 | MS.gene41459:CDS | 45.0% | |
| CCTTTCATGTGATTGCCACT+TGG | - | chr3.1:52172893-52172912 | None:intergenic | 45.0% | |
| CGTAGGTATACAGCATTCGA+AGG | + | chr3.1:52173040-52173059 | MS.gene41459:intron | 45.0% | |
| CTCTTATTCCCTTCACTAGC+TGG | + | chr3.1:52173196-52173215 | MS.gene41459:CDS | 45.0% | |
| GAGGGTAAGACTCTCACTTT+AGG | + | chr3.1:52172447-52172466 | MS.gene41459:intron | 45.0% | |
| GATCGTTTGTAAGGGTCAGA+GGG | - | chr3.1:52171855-52171874 | None:intergenic | 45.0% | |
| GTGTCCTAAGCTTGTAGCTT+GGG | + | chr3.1:52173263-52173282 | MS.gene41459:CDS | 45.0% | |
| TCAATTGCAATGTCGGACCA+AGG | - | chr3.1:52172361-52172380 | None:intergenic | 45.0% | |
| TGATCGTTTGTAAGGGTCAG+AGG | - | chr3.1:52171856-52171875 | None:intergenic | 45.0% | |
| TTATTGCAATGTCGGACCGA+GGG | + | chr3.1:52172429-52172448 | MS.gene41459:intron | 45.0% | |
| ! | CCATAGATTTTGTGAGGGTG+AGG | - | chr3.1:52173330-52173349 | None:intergenic | 45.0% |
| ! | CGATCACAAGCCAAGTTTTG+GGG | + | chr3.1:52171870-52171889 | MS.gene41459:CDS | 45.0% |
| ! | TTTGGCTAGCCACATTTGTG+GGG | + | chr3.1:52172153-52172172 | MS.gene41459:intron | 45.0% |
| !! | AAAAAAAAAATATATATGTT+TGG | - | chr3.1:52172965-52172984 | None:intergenic | 5.0% |
| AGCTTGTAGCTTGGGCCAAA+AGG | + | chr3.1:52173271-52173290 | MS.gene41459:CDS | 50.0% | |
| GGGCTTGAAGCCTTGAAGTA+TGG | - | chr3.1:52172872-52172891 | None:intergenic | 50.0% | |
| TTCAAGGCTTCAAGCCCAAG+TGG | + | chr3.1:52172875-52172894 | MS.gene41459:intron | 50.0% | |
| TTGGCCCAAGCTACAAGCTT+AGG | - | chr3.1:52173270-52173289 | None:intergenic | 50.0% | |
| ! | AGCTTGGGCCAAAAGGTGTA+TGG | + | chr3.1:52173278-52173297 | MS.gene41459:CDS | 50.0% |
| GAGTGGAGACCCCACAAATG+TGG | - | chr3.1:52172165-52172184 | None:intergenic | 55.0% | |
| GGGTCAGAGGGCAAAAGAGA+AGG | - | chr3.1:52171843-52171862 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 52171582 | 52173389 | 52171582 | ID=MS.gene41459 |
| chr3.1 | mRNA | 52171582 | 52173389 | 52171582 | ID=MS.gene41459.t1;Parent=MS.gene41459 |
| chr3.1 | exon | 52171582 | 52171911 | 52171582 | ID=MS.gene41459.t1.exon1;Parent=MS.gene41459.t1 |
| chr3.1 | CDS | 52171582 | 52171911 | 52171582 | ID=cds.MS.gene41459.t1;Parent=MS.gene41459.t1 |
| chr3.1 | exon | 52173045 | 52173389 | 52173045 | ID=MS.gene41459.t1.exon2;Parent=MS.gene41459.t1 |
| chr3.1 | CDS | 52173045 | 52173389 | 52173045 | ID=cds.MS.gene41459.t1;Parent=MS.gene41459.t1 |
| Gene Sequence |
| Protein sequence |
