AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058493


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058493.t1 MTR_8g087410 95.556 225 9 1 1 225 2 225 4.02e-158 437
MS.gene058493.t1 MTR_8g087425 63.839 224 80 1 1 224 1 223 2.46e-95 278
MS.gene058493.t1 MTR_6g080440 52.885 208 95 2 5 211 3 208 1.63e-71 217
MS.gene058493.t1 MTR_7g065720 48.113 212 106 3 2 211 4 213 1.31e-63 197
MS.gene058493.t1 MTR_4g019780 49.048 210 106 1 2 211 5 213 1.98e-62 194
MS.gene058493.t1 MTR_7g065740 43.111 225 124 3 2 224 4 226 8.73e-62 192
MS.gene058493.t1 MTR_1g090150 46.330 218 113 3 4 219 2 217 7.22e-60 188
MS.gene058493.t1 MTR_3g099757 46.890 209 110 1 1 209 1 208 9.85e-60 187
MS.gene058493.t1 MTR_7g065590 45.370 216 115 3 1 215 3 216 1.30e-59 187
MS.gene058493.t1 MTR_4g019790 45.249 221 118 3 5 224 7 225 4.12e-59 186
MS.gene058493.t1 MTR_7g065660 44.186 215 116 4 3 215 4 216 1.11e-58 185
MS.gene058493.t1 MTR_7g065750 43.556 225 123 3 2 224 4 226 3.69e-58 183
MS.gene058493.t1 MTR_7g065600 46.512 215 112 3 2 215 4 216 1.59e-57 182
MS.gene058493.t1 MTR_1g115195 45.413 218 115 3 5 219 3 219 3.11e-56 178
MS.gene058493.t1 MTR_7g065630 41.892 222 122 4 4 224 24 239 9.91e-56 177
MS.gene058493.t1 MTR_7g065290 45.540 213 113 3 4 215 6 216 1.10e-55 177
MS.gene058493.t1 MTR_7g065230 44.091 220 115 4 4 222 6 218 3.33e-54 173
MS.gene058493.t1 MTR_1g090060 43.636 220 121 2 5 222 3 221 1.58e-53 172
MS.gene058493.t1 MTR_7g065265 44.037 218 117 5 4 219 6 220 5.07e-53 170
MS.gene058493.t1 MTR_7g065710 44.444 207 108 4 6 211 5 205 1.24e-52 169
MS.gene058493.t1 MTR_7g065270 43.318 217 120 3 4 219 6 220 2.71e-51 166
MS.gene058493.t1 MTR_7g065680 38.117 223 131 4 3 224 5 221 9.72e-51 164
MS.gene058493.t1 MTR_1g090070 42.791 215 119 3 1 212 5 218 1.06e-50 164
MS.gene058493.t1 MTR_5g040430 41.315 213 118 3 3 209 5 216 1.86e-50 164
MS.gene058493.t1 MTR_2g070150 45.098 204 108 3 5 207 4 204 2.68e-50 162
MS.gene058493.t1 MTR_7g065260 45.701 221 107 5 4 218 13 226 4.81e-50 163
MS.gene058493.t1 MTR_4g059730 43.172 227 111 5 1 218 1 218 1.01e-49 162
MS.gene058493.t1 MTR_7g065640 41.395 215 104 4 3 215 4 198 3.83e-49 160
MS.gene058493.t1 MTR_2g070120 43.694 222 117 4 5 225 4 218 8.40e-49 159
MS.gene058493.t1 MTR_2g070180 44.118 204 110 3 6 208 5 205 7.54e-48 157
MS.gene058493.t1 MTR_2g070200 39.815 216 126 3 5 218 4 217 5.63e-47 155
MS.gene058493.t1 MTR_2g070140 45.026 191 101 3 19 208 2 189 2.72e-46 152
MS.gene058493.t1 MTR_1g090090 40.278 216 126 2 5 218 3 217 8.73e-46 152
MS.gene058493.t1 MTR_1g090100 42.788 208 116 2 6 211 3 209 9.88e-46 151
MS.gene058493.t1 MTR_7g065700 42.927 205 110 4 4 207 6 204 2.30e-45 150
MS.gene058493.t1 MTR_2g070130 40.488 205 118 3 5 208 4 205 4.48e-45 150
MS.gene058493.t1 MTR_5g037380 38.182 220 127 4 1 212 1 219 1.68e-44 149
MS.gene058493.t1 MTR_2g070210 44.385 187 97 5 5 187 4 187 4.52e-43 145
MS.gene058493.t1 MTR_3g467420 45.109 184 98 2 5 187 9 190 5.02e-43 145
MS.gene058493.t1 MTR_2g070060 41.935 186 103 4 4 187 3 185 5.63e-42 142
MS.gene058493.t1 MTR_8g061950 41.014 217 119 6 1 209 1 216 9.02e-42 142
MS.gene058493.t1 MTR_8g056940 42.021 188 106 2 4 190 3 188 1.82e-41 140
MS.gene058493.t1 MTR_4g124130 45.405 185 97 3 5 187 4 186 5.00e-41 139
MS.gene058493.t1 MTR_3g467430 43.085 188 104 2 1 187 5 190 2.55e-39 135
MS.gene058493.t1 MTR_2g070070 40.000 210 118 6 4 211 3 206 4.06e-37 129
MS.gene058493.t1 MTR_2g070110 41.622 185 104 3 4 187 3 184 1.30e-36 128
MS.gene058493.t1 MTR_5g076900 39.037 187 111 2 2 187 3 187 2.12e-36 127
MS.gene058493.t1 MTR_0186s0030 50.000 130 64 1 8 136 7 136 2.72e-33 117
MS.gene058493.t1 MTR_2g072120 48.649 74 34 3 48 118 1 73 2.41e-17 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058493.t1 AT2G29420 44.037 218 121 1 3 220 7 223 6.97e-64 198
MS.gene058493.t1 AT2G29460 46.188 223 116 3 2 222 4 224 1.91e-62 194
MS.gene058493.t1 AT2G29490 48.571 210 104 3 2 209 4 211 5.50e-62 193
MS.gene058493.t1 AT2G29480 45.740 223 117 3 2 222 4 224 5.55e-62 193
MS.gene058493.t1 AT2G29450 46.847 222 113 4 4 222 5 224 1.41e-60 189
MS.gene058493.t1 AT2G29440 45.740 223 117 3 2 222 3 223 6.97e-60 188
MS.gene058493.t1 AT3G09270 46.667 210 109 3 2 209 3 211 2.05e-58 184
MS.gene058493.t1 AT2G29470 45.498 211 110 4 2 209 4 212 2.02e-55 176
MS.gene058493.t1 AT1G17170 42.791 215 118 4 5 218 4 214 1.88e-49 161
MS.gene058493.t1 AT1G59670 43.662 213 111 5 4 208 5 216 1.24e-47 157
MS.gene058493.t1 AT1G17180 41.148 209 119 3 5 212 4 209 2.20e-47 156
MS.gene058493.t1 AT1G10370 42.081 221 120 4 1 214 1 220 4.49e-47 155
MS.gene058493.t1 AT1G59700 43.564 202 106 4 4 197 5 206 6.17e-46 152
MS.gene058493.t1 AT1G78370 39.806 206 120 3 8 212 7 209 1.64e-45 151
MS.gene058493.t1 AT1G17190 40.359 223 129 3 1 222 1 220 3.89e-45 150
MS.gene058493.t1 AT1G78380 42.000 200 103 3 4 202 3 190 4.89e-45 150
MS.gene058493.t1 AT1G78340 43.169 183 101 3 5 186 4 184 3.15e-44 147
MS.gene058493.t1 AT1G53680 43.617 188 101 3 3 187 5 190 2.84e-43 145
MS.gene058493.t1 AT1G74590 38.164 207 122 3 13 214 15 220 2.69e-42 143
MS.gene058493.t1 AT1G78360 39.908 218 126 5 5 220 4 218 8.03e-42 141
MS.gene058493.t1 AT1G78320 38.426 216 127 4 4 216 3 215 9.85e-42 141
MS.gene058493.t1 AT3G43800 41.627 209 115 4 1 204 1 207 1.88e-41 141
MS.gene058493.t1 AT1G27130 37.500 224 131 6 2 217 3 225 2.05e-40 138
MS.gene058493.t1 AT5G62480 37.037 216 125 4 14 220 17 230 3.73e-40 138
MS.gene058493.t1 AT1G10360 38.725 204 118 3 1 197 1 204 2.75e-39 135
MS.gene058493.t1 AT1G69920 37.668 223 126 7 3 215 32 251 1.37e-38 134
MS.gene058493.t1 AT1G27140 35.841 226 135 5 2 218 3 227 7.76e-38 132
MS.gene058493.t1 AT1G69930 33.784 222 140 4 2 217 9 229 1.01e-37 131
MS.gene058493.t1 AT1G78320 32.558 215 114 4 4 216 3 188 6.41e-29 107
MS.gene058493.t1 AT5G62480 29.767 215 116 4 14 220 17 204 1.93e-25 99.4
MS.gene058493.t1 AT5G62480 29.767 215 115 4 14 220 17 203 3.56e-25 98.6

Find 59 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCAATTTGGGAAGAAAT+TGG 0.111299 4.1:-13300653 MS.gene058493:CDS
GTGACTCTGCAATTGATTTC+TGG 0.157766 4.1:+13301782 None:intergenic
AAAGTTAGAAGAGGAGATAA+AGG 0.273945 4.1:-13300744 MS.gene058493:CDS
GACCCAATTTCTTCCCAAAT+TGG 0.274164 4.1:+13300650 None:intergenic
ATAAAGGGAAAGAAATTCTT+TGG 0.305857 4.1:-13300728 MS.gene058493:CDS
AAAGTTCCGGTTCTTGTTCA+TGG 0.322486 4.1:-13301805 MS.gene058493:CDS
AAAGATCTCAGGCTCGCTTT+TGG 0.326368 4.1:-13301693 MS.gene058493:CDS
TATAGCTTGCGCTGGGTTCA+TGG 0.334296 4.1:-13300832 MS.gene058493:intron
AATGTCCTTCCATCTCTTCA+TGG 0.338522 4.1:-13300604 MS.gene058493:CDS
AGTTAAGCAGCTTCACATCT+TGG 0.361900 4.1:+13301956 None:intergenic
ACCGGAACTTTCTTATGAAT+CGG 0.380626 4.1:+13301817 None:intergenic
TTCCAATTTGGGAAGAAATT+GGG 0.398944 4.1:-13300652 MS.gene058493:CDS
CCCGATTCATAAGAAAGTTC+CGG 0.414826 4.1:-13301818 MS.gene058493:CDS
TTATTGCCACCGTCGCATAA+AGG 0.420018 4.1:-13300513 MS.gene058493:CDS
ACCTTGATCTTGCTCTTGGA+TGG 0.423990 4.1:-13300688 MS.gene058493:CDS
TAAAGAATCATTTCATCCCT+TGG 0.429286 4.1:+13300533 None:intergenic
CCGGAACTTTCTTATGAATC+GGG 0.433313 4.1:+13301818 None:intergenic
TTCTGGCCATGAACAAGAAC+CGG 0.434336 4.1:+13301799 None:intergenic
TGGATTGCATTGATTAAGAA+AGG 0.435401 4.1:-13300812 MS.gene058493:CDS
GGCTAAGTTATCTGATGAAA+AGG 0.437582 4.1:-13301671 MS.gene058493:intron
CATTCAACTCTACGACCAAC+TGG 0.446242 4.1:+13301922 None:intergenic
GGGTACCTTGATCTTGCTCT+TGG 0.453072 4.1:-13300692 MS.gene058493:CDS
TCTTTGGAGGGGACACTATC+GGG 0.454808 4.1:-13300712 MS.gene058493:CDS
TAAATTATTATAGCTTGCGC+TGG 0.466026 4.1:-13300840 MS.gene058493:intron
TGATTAAGAAAGGTGATGAA+TGG 0.474122 4.1:-13300802 MS.gene058493:CDS
AAAGGAGGCAAGAGAAATCA+TGG 0.475218 4.1:-13300768 MS.gene058493:CDS
TTCTTTGGAGGGGACACTAT+CGG 0.475345 4.1:-13300713 MS.gene058493:CDS
GATTAAGAAAGGTGATGAAT+GGG 0.480475 4.1:-13300801 MS.gene058493:CDS
AAGTTAGAAGAGGAGATAAA+GGG 0.491500 4.1:-13300743 MS.gene058493:CDS
GAAAGGTGATGAATGGGAAA+AGG 0.495659 4.1:-13300795 MS.gene058493:CDS
TGAGATCTTTGATAAGGATC+AGG 0.498359 4.1:+13301706 None:intergenic
AGTTGGTCGTAGAGTTGAAT+GGG 0.508405 4.1:-13301920 MS.gene058493:CDS
CAGTTGGTCGTAGAGTTGAA+TGG 0.517051 4.1:-13301921 MS.gene058493:CDS
TGATCCTTATCAAAGATCTC+AGG 0.520135 4.1:-13301704 MS.gene058493:CDS
CGAGCCTGAGATCTTTGATA+AGG 0.520914 4.1:+13301700 None:intergenic
AAACACTCCTTGATGATGAT+AGG 0.524604 4.1:+13300560 None:intergenic
AATCATGGAAAAGTTAGAAG+AGG 0.531445 4.1:-13300753 MS.gene058493:CDS
AGGGAAAGAAATTCTTTGGA+GGG 0.536580 4.1:-13300724 MS.gene058493:CDS
ATTGATCTTCCATGAAGAGA+TGG 0.543546 4.1:+13300595 None:intergenic
TGAATGGGAAAAGGCTCTAA+AGG 0.545680 4.1:-13300786 MS.gene058493:CDS
TCCATCCAAGAGCAAGATCA+AGG 0.557485 4.1:+13300687 None:intergenic
TAAGGATCAGGAGGCAGCAA+TGG 0.562517 4.1:+13301718 None:intergenic
CAAGGAGTGTTTGCCACCAA+GGG 0.564625 4.1:-13300549 MS.gene058493:CDS
TGAATGGGCTCTAAAACTCA+AGG 0.568264 4.1:-13301905 MS.gene058493:CDS
TCAAGGAGTGTTTGCCACCA+AGG 0.571195 4.1:-13300550 MS.gene058493:CDS
ACTCCTTGATGATGATAGGA+TGG 0.572678 4.1:+13300564 None:intergenic
TTGAATACATTGATGAAACA+TGG 0.575829 4.1:-13301750 MS.gene058493:CDS
AAGGGAAAGAAATTCTTTGG+AGG 0.576725 4.1:-13300725 MS.gene058493:CDS
GAGCCATCCTATCATCATCA+AGG 0.581782 4.1:-13300567 MS.gene058493:CDS
AAATTATTATAGCTTGCGCT+GGG 0.589664 4.1:-13300839 MS.gene058493:intron
AAGAATACTCCTTTATGCGA+CGG 0.595491 4.1:+13300504 None:intergenic
GGGAAAGAAATTCTTTGGAG+GGG 0.609810 4.1:-13300723 MS.gene058493:CDS
ATCTTCCATGAAGAGATGGA+AGG 0.621011 4.1:+13300599 None:intergenic
AGAATCATTTCATCCCTTGG+TGG 0.643379 4.1:+13300536 None:intergenic
GAATGGGCTCTAAAACTCAA+GGG 0.646090 4.1:-13301904 MS.gene058493:CDS
GATCTTTGATAAGGATCAGG+AGG 0.658191 4.1:+13301709 None:intergenic
ATGGGAAAAGGCTCTAAAGG+AGG 0.677413 4.1:-13300783 MS.gene058493:CDS
AATACTCCTTTATGCGACGG+TGG 0.688837 4.1:+13300507 None:intergenic
GAGTATTCTTCAACTCATCG+TGG 0.696267 4.1:-13300491 MS.gene058493:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATATAAAACTATTTTAA+AGG + chr4.1:13301389-13301408 None:intergenic 10.0%
!! TAATTTACACATACAAAAAT+AGG + chr4.1:13301598-13301617 None:intergenic 15.0%
!!! AATAATTGTTTTATGAACTT+AGG - chr4.1:13300996-13301015 MS.gene058493:intron 15.0%
!! TATCTCTTGAATTTATTAGA+TGG + chr4.1:13301180-13301199 None:intergenic 20.0%
!! TATGTTGTTCAAATTTAACT+AGG - chr4.1:13300826-13300845 MS.gene058493:CDS 20.0%
!!! AAAATTATGTTTCCTTTTTG+AGG - chr4.1:13300895-13300914 MS.gene058493:intron 20.0%
! AAAATATTCTTGCCTCAAAA+AGG + chr4.1:13300910-13300929 None:intergenic 25.0%
! AAATACTACGTTTCTTTCAA+AGG - chr4.1:13300866-13300885 MS.gene058493:intron 25.0%
! ATAAAGGGAAAGAAATTCTT+TGG - chr4.1:13301723-13301742 MS.gene058493:CDS 25.0%
! ATTACTTGAGTACAATTGTT+TGG - chr4.1:13301051-13301070 MS.gene058493:intron 25.0%
! TTGAATACATTGATGAAACA+TGG - chr4.1:13300701-13300720 MS.gene058493:CDS 25.0%
!!! TTGAGGCAAGAATATTTTTT+TGG - chr4.1:13300912-13300931 MS.gene058493:intron 25.0%
!!! TTTTTTTGGTGTTAATCATC+CGG - chr4.1:13300926-13300945 MS.gene058493:intron 25.0%
AAAGTTAGAAGAGGAGATAA+AGG - chr4.1:13301707-13301726 MS.gene058493:CDS 30.0%
AAGTTAGAAGAGGAGATAAA+GGG - chr4.1:13301708-13301727 MS.gene058493:CDS 30.0%
AATCATGGAAAAGTTAGAAG+AGG - chr4.1:13301698-13301717 MS.gene058493:CDS 30.0%
ACCGTTTCTATCAACATATT+AGG + chr4.1:13301448-13301467 None:intergenic 30.0%
ATTTAACTAGGCTTATTCTG+AGG - chr4.1:13300838-13300857 MS.gene058493:intron 30.0%
CATGATCAATATGTGTTTAG+TGG - chr4.1:13301023-13301042 MS.gene058493:intron 30.0%
GATGTTAATTATTCCATTCC+AGG - chr4.1:13301269-13301288 MS.gene058493:intron 30.0%
GATTAAGAAAGGTGATGAAT+GGG - chr4.1:13301650-13301669 MS.gene058493:intron 30.0%
TAAAGAATCATTTCATCCCT+TGG + chr4.1:13301921-13301940 None:intergenic 30.0%
TGATTAAGAAAGGTGATGAA+TGG - chr4.1:13301649-13301668 MS.gene058493:intron 30.0%
TGTTAATCATCCGGTTAATA+GGG - chr4.1:13300935-13300954 MS.gene058493:intron 30.0%
TTCCAATTTGGGAAGAAATT+GGG - chr4.1:13301799-13301818 MS.gene058493:CDS 30.0%
! AAATTATTATAGCTTGCGCT+GGG - chr4.1:13301612-13301631 MS.gene058493:intron 30.0%
! AACTTTTTATTGAGTCCAGT+TGG - chr4.1:13300514-13300533 MS.gene058493:CDS 30.0%
! GCCTAATATGTTGATAGAAA+CGG - chr4.1:13301444-13301463 MS.gene058493:intron 30.0%
! TAAATTATTATAGCTTGCGC+TGG - chr4.1:13301611-13301630 MS.gene058493:intron 30.0%
!! AGATGGAAGGACATTTTAAT+GGG + chr4.1:13301842-13301861 None:intergenic 30.0%
!! CACTTGTTTTCTTCCAATTT+GGG - chr4.1:13301788-13301807 MS.gene058493:CDS 30.0%
!! TCACTTGTTTTCTTCCAATT+TGG - chr4.1:13301787-13301806 MS.gene058493:CDS 30.0%
!! TGGATTGCATTGATTAAGAA+AGG - chr4.1:13301639-13301658 MS.gene058493:intron 30.0%
AAGAATACTCCTTTATGCGA+CGG + chr4.1:13301950-13301969 None:intergenic 35.0%
AAGGGAAAGAAATTCTTTGG+AGG - chr4.1:13301726-13301745 MS.gene058493:CDS 35.0%
ACAATACTTGAATGTATGCC+TGG + chr4.1:13301290-13301309 None:intergenic 35.0%
ACCGGAACTTTCTTATGAAT+CGG + chr4.1:13300637-13300656 None:intergenic 35.0%
AGGGAAAGAAATTCTTTGGA+GGG - chr4.1:13301727-13301746 MS.gene058493:CDS 35.0%
ATTGATCTTCCATGAAGAGA+TGG + chr4.1:13301859-13301878 None:intergenic 35.0%
CTTCCAATTTGGGAAGAAAT+TGG - chr4.1:13301798-13301817 MS.gene058493:CDS 35.0%
GGCTAAGTTATCTGATGAAA+AGG - chr4.1:13300780-13300799 MS.gene058493:CDS 35.0%
GTGTTAATCATCCGGTTAAT+AGG - chr4.1:13300934-13300953 MS.gene058493:intron 35.0%
GTTAATCATCCGGTTAATAG+GGG - chr4.1:13300936-13300955 MS.gene058493:intron 35.0%
TGAGATCTTTGATAAGGATC+AGG + chr4.1:13300748-13300767 None:intergenic 35.0%
TGATCCTTATCAAAGATCTC+AGG - chr4.1:13300747-13300766 MS.gene058493:CDS 35.0%
! GAGATGGAAGGACATTTTAA+TGG + chr4.1:13301843-13301862 None:intergenic 35.0%
!! AAACACTCCTTGATGATGAT+AGG + chr4.1:13301894-13301913 None:intergenic 35.0%
AAAGGAGGCAAGAGAAATCA+TGG - chr4.1:13301683-13301702 MS.gene058493:CDS 40.0%
AAAGTTCCGGTTCTTGTTCA+TGG - chr4.1:13300646-13300665 MS.gene058493:CDS 40.0%
AATGTCCTTCCATCTCTTCA+TGG - chr4.1:13301847-13301866 MS.gene058493:CDS 40.0%
ACTTGAATGTATGCCTGGAA+TGG + chr4.1:13301285-13301304 None:intergenic 40.0%
AGAATCATTTCATCCCTTGG+TGG + chr4.1:13301918-13301937 None:intergenic 40.0%
AGTTAAGCAGCTTCACATCT+TGG + chr4.1:13300498-13300517 None:intergenic 40.0%
AGTTGGTCGTAGAGTTGAAT+GGG - chr4.1:13300531-13300550 MS.gene058493:CDS 40.0%
ATCTTCCATGAAGAGATGGA+AGG + chr4.1:13301855-13301874 None:intergenic 40.0%
CCCGATTCATAAGAAAGTTC+CGG - chr4.1:13300633-13300652 MS.gene058493:CDS 40.0%
CCGGAACTTTCTTATGAATC+GGG + chr4.1:13300636-13300655 None:intergenic 40.0%
GAAAGGTGATGAATGGGAAA+AGG - chr4.1:13301656-13301675 MS.gene058493:intron 40.0%
GACCCAATTTCTTCCCAAAT+TGG + chr4.1:13301804-13301823 None:intergenic 40.0%
GAGTATTCTTCAACTCATCG+TGG - chr4.1:13301960-13301979 MS.gene058493:CDS 40.0%
GATCTTTGATAAGGATCAGG+AGG + chr4.1:13300745-13300764 None:intergenic 40.0%
! GGGAAAGAAATTCTTTGGAG+GGG - chr4.1:13301728-13301747 MS.gene058493:CDS 40.0%
! GTGACTCTGCAATTGATTTC+TGG + chr4.1:13300672-13300691 None:intergenic 40.0%
! TGAATGGGAAAAGGCTCTAA+AGG - chr4.1:13301665-13301684 MS.gene058493:intron 40.0%
!! ACTCCTTGATGATGATAGGA+TGG + chr4.1:13301890-13301909 None:intergenic 40.0%
!! GAATGGGCTCTAAAACTCAA+GGG - chr4.1:13300547-13300566 MS.gene058493:CDS 40.0%
!! TGAATGGGCTCTAAAACTCA+AGG - chr4.1:13300546-13300565 MS.gene058493:CDS 40.0%
AATACTCCTTTATGCGACGG+TGG + chr4.1:13301947-13301966 None:intergenic 45.0%
ACCTTGATCTTGCTCTTGGA+TGG - chr4.1:13301763-13301782 MS.gene058493:CDS 45.0%
ACTCTCCTTCCCCTATTAAC+CGG + chr4.1:13300948-13300967 None:intergenic 45.0%
ATCATCCGGTTAATAGGGGA+AGG - chr4.1:13300940-13300959 MS.gene058493:intron 45.0%
CAGTTGGTCGTAGAGTTGAA+TGG - chr4.1:13300530-13300549 MS.gene058493:CDS 45.0%
CATTCAACTCTACGACCAAC+TGG + chr4.1:13300532-13300551 None:intergenic 45.0%
CGAGCCTGAGATCTTTGATA+AGG + chr4.1:13300754-13300773 None:intergenic 45.0%
GAGCCATCCTATCATCATCA+AGG - chr4.1:13301884-13301903 MS.gene058493:CDS 45.0%
TCCATCCAAGAGCAAGATCA+AGG + chr4.1:13301767-13301786 None:intergenic 45.0%
TTATTGCCACCGTCGCATAA+AGG - chr4.1:13301938-13301957 MS.gene058493:CDS 45.0%
TTCTGGCCATGAACAAGAAC+CGG + chr4.1:13300655-13300674 None:intergenic 45.0%
! AAAGATCTCAGGCTCGCTTT+TGG - chr4.1:13300758-13300777 MS.gene058493:CDS 45.0%
! TTCTTTGGAGGGGACACTAT+CGG - chr4.1:13301738-13301757 MS.gene058493:CDS 45.0%
!! AAGATCTCAGGCTCGCTTTT+GGG - chr4.1:13300759-13300778 MS.gene058493:CDS 45.0%
!! ATGGGAAAAGGCTCTAAAGG+AGG - chr4.1:13301668-13301687 MS.gene058493:intron 45.0%
GGAAGGAGAGTTCTCTCGAA+AGG - chr4.1:13300957-13300976 MS.gene058493:intron 50.0%
GGGTACCTTGATCTTGCTCT+TGG - chr4.1:13301759-13301778 MS.gene058493:CDS 50.0%
TAAGGATCAGGAGGCAGCAA+TGG + chr4.1:13300736-13300755 None:intergenic 50.0%
! TATAGCTTGCGCTGGGTTCA+TGG - chr4.1:13301619-13301638 MS.gene058493:intron 50.0%
! TCTTTGGAGGGGACACTATC+GGG - chr4.1:13301739-13301758 MS.gene058493:CDS 50.0%
!! CAAGGAGTGTTTGCCACCAA+GGG - chr4.1:13301902-13301921 MS.gene058493:CDS 50.0%
!! TCAAGGAGTGTTTGCCACCA+AGG - chr4.1:13301901-13301920 MS.gene058493:CDS 50.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 13300487 13301986 13300487 ID=MS.gene058493
chr4.1 mRNA 13300487 13301986 13300487 ID=MS.gene058493.t1;Parent=MS.gene058493
chr4.1 exon 13301672 13301986 13301672 ID=MS.gene058493.t1.exon1;Parent=MS.gene058493.t1
chr4.1 CDS 13301672 13301986 13301672 ID=cds.MS.gene058493.t1;Parent=MS.gene058493.t1
chr4.1 exon 13300487 13300849 13300487 ID=MS.gene058493.t1.exon2;Parent=MS.gene058493.t1
chr4.1 CDS 13300487 13300849 13300487 ID=cds.MS.gene058493.t1;Parent=MS.gene058493.t1
Gene Sequence

>MS.gene058493

ATGAGAAACCAAGATGTGAAGCTGCTTAACTTTTTATTGAGTCCAGTTGGTCGTAGAGTTGAATGGGCTCTAAAACTCAAGGGTGTTGAGTATGATTATATAGAAGAAGATATCTTCAACAAAAGTAGTCTTCTTTTCGAATTGAACCCGATTCATAAGAAAGTTCCGGTTCTTGTTCATGGCCAGAAATCAATTGCAGAGTCACTAATTATTCTTGAATACATTGATGAAACATGGAAGCAATATCCATTGCTGCCTCCTGATCCTTATCAAAGATCTCAGGCTCGCTTTTGGGCTAAGTTATCTGATGAAAAGGTGATAGTTTATTTATTTTTTCTTTATGTTGTTCAAATTTAACTAGGCTTATTCTGAGGTTATAAAATACTACGTTTCTTTCAAAGGAAAAAAAAAATTATGTTTCCTTTTTGAGGCAAGAATATTTTTTTGGTGTTAATCATCCGGTTAATAGGGGAAGGAGAGTTCTCTCGAAAGGTAAGTAAATTCTAGTCAATAATTGTTTTATGAACTTAGGTTTTCATGATCAATATGTGTTTAGTGGAGCTCATTACTTGAGTACAATTGTTTGGTTAGAGACAAGAATATTTAATGTTACATAGAAGATATACACAAATTTTAATTTGAAGTTATATAATTCTATCAATTTTTTTAATAACATAACTTAAAAAACAGCCATCTAATAAATTCAAGAGATACTTTAATTATGAGAAAATATATTAAAAATAAAATATAAATATAGAAGATTTTAATTTTTGTATATTGTCGATGTTAATTATTCCATTCCAGGCATACATTCAAGTATTGTTACATTATTTAAAGAATATGACAAATTATATAGTTTTAAACACGATACGCAATGCAATGATATTCAATTGAATTTACCTTTAAAATAGTTTTATATTGACTATGCATACAAGTTAAACTCAATATAGAATAGTTGCCTAATATGTTGATAGAAACGGTACATTATTAAAATTGCATTGAAATGACTGTGCATGTTATTTCTTTTTTTAGTTTTGATTTGTACGAACTTTATTCGATTGAATGACATATAATTATTCAAATAATTCAATGACTTATATTTCAAAAGCCTATTTTTGTATGTGTAAATTATTATAGCTTGCGCTGGGTTCATGGATTGCATTGATTAAGAAAGGTGATGAATGGGAAAAGGCTCTAAAGGAGGCAAGAGAAATCATGGAAAAGTTAGAAGAGGAGATAAAGGGAAAGAAATTCTTTGGAGGGGACACTATCGGGTACCTTGATCTTGCTCTTGGATGGATCACTTGTTTTCTTCCAATTTGGGAAGAAATTGGGTCAACGCAGATACTTGACCCATTAAAATGTCCTTCCATCTCTTCATGGAAGATCAATTTTCTGAGCCATCCTATCATCATCAAGGAGTGTTTGCCACCAAGGGATGAAATGATTCTTTATTGCCACCGTCGCATAAAGGAGTATTCTTCAACTCATCGTGGTTAA

Protein sequence

>MS.gene058493.t1

MRNQDVKLLNFLLSPVGRRVEWALKLKGVEYDYIEEDIFNKSSLLFELNPIHKKVPVLVHGQKSIAESLIILEYIDETWKQYPLLPPDPYQRSQARFWAKLSDEKLALGSWIALIKKGDEWEKALKEAREIMEKLEEEIKGKKFFGGDTIGYLDLALGWITCFLPIWEEIGSTQILDPLKCPSISSWKINFLSHPIIIKECLPPRDEMILYCHRRIKEYSSTHRG