Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41661.t1 | XP_024633187.1 | 96.2 | 263 | 10 | 0 | 1 | 263 | 65 | 327 | 1.50E-137 | 498.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41661.t1 | Q0WRJ2 | 58.6 | 256 | 106 | 0 | 1 | 256 | 69 | 324 | 1.7e-76 | 287.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41661.t1 | A0A396JBD3 | 96.2 | 263 | 10 | 0 | 1 | 263 | 65 | 327 | 1.1e-137 | 498.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055528 | MS.gene41661 | 0.807767 | 4.30E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055528 | MS.gene41661 | PPI |
| MS.gene00863 | MS.gene41661 | PPI |
| MS.gene53169 | MS.gene41661 | PPI |
| MS.gene62620 | MS.gene41661 | PPI |
| MS.gene01864 | MS.gene41661 | PPI |
| MS.gene99693 | MS.gene41661 | PPI |
| MS.gene55382 | MS.gene41661 | PPI |
| MS.gene040151 | MS.gene41661 | PPI |
| MS.gene95889 | MS.gene41661 | PPI |
| MS.gene41661 | MS.gene93783 | PPI |
| MS.gene41661 | MS.gene002901 | PPI |
| MS.gene047943 | MS.gene41661 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41661.t1 | MTR_2g022600 | 96.109 | 257 | 10 | 0 | 1 | 257 | 65 | 321 | 0.0 | 508 |
| MS.gene41661.t1 | MTR_3g098750 | 89.313 | 262 | 13 | 4 | 1 | 261 | 186 | 433 | 1.78e-163 | 461 |
| MS.gene41661.t1 | MTR_0103s0010 | 92.405 | 79 | 6 | 0 | 179 | 257 | 1 | 79 | 4.56e-47 | 154 |
| MS.gene41661.t1 | MTR_6g009130 | 92.405 | 79 | 6 | 0 | 179 | 257 | 1 | 79 | 6.27e-47 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41661.t1 | AT3G06060 | 68.359 | 256 | 81 | 0 | 1 | 256 | 69 | 324 | 1.01e-127 | 365 |
| MS.gene41661.t1 | AT3G06060 | 68.359 | 256 | 81 | 0 | 1 | 256 | 86 | 341 | 1.30e-127 | 366 |
| MS.gene41661.t1 | AT5G19200 | 62.646 | 257 | 96 | 0 | 1 | 257 | 67 | 323 | 2.18e-117 | 339 |
Find 62 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTATTCAGCCAGTAAATT+TGG | 0.172419 | 3.4:+88709765 | MS.gene41661:CDS |
| AGAAGAGGCGGCAATGATTT+TGG | 0.231745 | 3.4:-88710361 | None:intergenic |
| TGCGTTGGAATTGGAGAAAA+TGG | 0.239743 | 3.4:+88707134 | MS.gene41661:CDS |
| GGAGTTTAGGTGGGAATTTA+TGG | 0.244735 | 3.4:+88709735 | MS.gene41661:intron |
| CCCTCAGAGGTCATTCTTAA+TGG | 0.249957 | 3.4:+88710503 | MS.gene41661:CDS |
| ACCACGGAGGCCAAATTTAC+TGG | 0.299819 | 3.4:-88709775 | None:intergenic |
| TACGATTGATGTTAATTTGA+TGG | 0.335633 | 3.4:+88707176 | MS.gene41661:CDS |
| AAAATCATTGCCGCCTCTTC+TGG | 0.340277 | 3.4:+88710363 | MS.gene41661:CDS |
| GTTCTTAGCTTCTTCGAGTT+TGG | 0.354464 | 3.4:-88706980 | None:intergenic |
| GCGTTATCCCTAGCAACTTC+AGG | 0.363331 | 3.4:+88710474 | MS.gene41661:CDS |
| CACTATGTTTCCAGTGGAAC+TGG | 0.390366 | 3.4:+88710568 | MS.gene41661:CDS |
| CTTTGCCTCATATGAAGAAT+AGG | 0.397692 | 3.4:+88707223 | MS.gene41661:CDS |
| TGTTTCATCACAAGCTGGTC+AGG | 0.403214 | 3.4:+88707275 | MS.gene41661:CDS |
| TTTGTTGAGGTTATTGCTGC+TGG | 0.403834 | 3.4:+88710528 | MS.gene41661:CDS |
| TCTTTCCTATTCTTCATATG+AGG | 0.422042 | 3.4:-88707228 | None:intergenic |
| GCATTGCAACAAGAGGTTAT+AGG | 0.440395 | 3.4:+88709807 | MS.gene41661:CDS |
| GATGTGTTGTTGTTGAATCA+TGG | 0.446056 | 3.4:+88707102 | MS.gene41661:CDS |
| ATTCAACAACAACACATCAA+TGG | 0.449590 | 3.4:-88707097 | None:intergenic |
| TATCATTTCTTGCAATTTGG+AGG | 0.451120 | 3.4:+88710446 | MS.gene41661:CDS |
| TTCAACAACAACACATCAAT+GGG | 0.463160 | 3.4:-88707096 | None:intergenic |
| TTATTACCTTCCACAAGTCC+AGG | 0.487399 | 3.4:-88709876 | None:intergenic |
| ACGATTGATGTTAATTTGAT+GGG | 0.487967 | 3.4:+88707177 | MS.gene41661:CDS |
| AAGAAAGTGGCTGATGAAGC+TGG | 0.490908 | 3.4:+88707072 | MS.gene41661:CDS |
| CCTCCAGACACGGATACTCC+TGG | 0.495714 | 3.4:+88709858 | MS.gene41661:CDS |
| GGGATAAACCTGAAGTTGCT+AGG | 0.498430 | 3.4:-88710482 | None:intergenic |
| CACGGATACTCCTGGACTTG+TGG | 0.498701 | 3.4:+88709866 | MS.gene41661:CDS |
| TGTTTCCAGTGGAACTGGTA+TGG | 0.499008 | 3.4:+88710573 | MS.gene41661:CDS |
| AGCTTCTTCGAGTTTGGTGA+GGG | 0.500666 | 3.4:-88706974 | None:intergenic |
| AGTCCAGGAGTATCCGTGTC+TGG | 0.502012 | 3.4:-88709861 | None:intergenic |
| ATTCTTAATGGCATTTGTTG+AGG | 0.509829 | 3.4:+88710515 | MS.gene41661:CDS |
| ACGCCACCGGCGTTGAAGTA+GGG | 0.517118 | 3.4:+88707013 | MS.gene41661:CDS |
| ATCATTTCTTGCAATTTGGA+GGG | 0.526476 | 3.4:+88710447 | MS.gene41661:CDS |
| GAAACAAAAGCAATAGAAGT+AGG | 0.528412 | 3.4:-88707258 | None:intergenic |
| CCATTAAGAATGACCTCTGA+GGG | 0.529640 | 3.4:-88710503 | None:intergenic |
| TAGAGAAGTGGCACAAGCAA+AGG | 0.532078 | 3.4:+88710601 | MS.gene41661:CDS |
| TACTTCCATACCAGTTCCAC+TGG | 0.538704 | 3.4:-88710578 | None:intergenic |
| CACGCCACCGGCGTTGAAGT+AGG | 0.540975 | 3.4:+88707012 | MS.gene41661:CDS |
| AGCAGAAGCATTGCAACAAG+AGG | 0.543956 | 3.4:+88709800 | MS.gene41661:CDS |
| TAGCTTCTTCGAGTTTGGTG+AGG | 0.548548 | 3.4:-88706975 | None:intergenic |
| AGCTTTATGAGCAACTTCAT+CGG | 0.551631 | 3.4:-88710397 | None:intergenic |
| GCCAGTAAATTTGGCCTCCG+TGG | 0.553386 | 3.4:+88709774 | MS.gene41661:CDS |
| AGAGTGCATCAAGTGCTTTG+AGG | 0.565684 | 3.4:-88711735 | None:intergenic |
| AACTCTGTCAAACACGCCAC+CGG | 0.576757 | 3.4:+88707000 | MS.gene41661:CDS |
| GGATAAACCTGAAGTTGCTA+GGG | 0.579338 | 3.4:-88710481 | None:intergenic |
| GGCTTTCATAAAACCAGAAG+AGG | 0.580601 | 3.4:-88710376 | None:intergenic |
| AAATATCCCTACTTCAACGC+CGG | 0.589585 | 3.4:-88707019 | None:intergenic |
| CAGGAGTATCCGTGTCTGGA+GGG | 0.595120 | 3.4:-88709857 | None:intergenic |
| GATACTCCTGGACTTGTGGA+AGG | 0.602564 | 3.4:+88709870 | MS.gene41661:CDS |
| CCAGGAGTATCCGTGTCTGG+AGG | 0.613762 | 3.4:-88709858 | None:intergenic |
| TTGCAGCACTATGTTTCCAG+TGG | 0.620013 | 3.4:+88710562 | MS.gene41661:CDS |
| CTATGATGCGGTGAAGAAAG+TGG | 0.625265 | 3.4:+88707059 | MS.gene41661:CDS |
| GGTATGGAAGTATAGAGAAG+TGG | 0.632472 | 3.4:+88710589 | MS.gene41661:CDS |
| TATCCCTACTTCAACGCCGG+TGG | 0.634282 | 3.4:-88707016 | None:intergenic |
| TCTGATATTCCCTCCAGACA+CGG | 0.634324 | 3.4:+88709848 | MS.gene41661:CDS |
| TTTCATAAAACCAGAAGAGG+CGG | 0.645943 | 3.4:-88710373 | None:intergenic |
| TGAAGTAGGGATATTTGATG+CGG | 0.647074 | 3.4:+88707026 | MS.gene41661:CDS |
| GCCATTAAGAATGACCTCTG+AGG | 0.666181 | 3.4:-88710504 | None:intergenic |
| CTTCAGGTTTATCCCCTCAG+AGG | 0.666800 | 3.4:+88710490 | MS.gene41661:CDS |
| GCAATGCTTCTGCTAAACCA+CGG | 0.698466 | 3.4:-88709791 | None:intergenic |
| CATTAAGAATGACCTCTGAG+GGG | 0.759100 | 3.4:-88710502 | None:intergenic |
| ATGCTTCTGCTAAACCACGG+AGG | 0.773999 | 3.4:-88709788 | None:intergenic |
| GGATGTAAGAGACTATGATG+CGG | 0.841105 | 3.4:+88707047 | MS.gene41661:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAAAGAAAAAGAGAA+GGG | - | chr3.4:88709595-88709614 | None:intergenic | 15.0% |
| !! | TATCAAAAGTAATACTAATA+TGG | - | chr3.4:88709929-88709948 | None:intergenic | 15.0% |
| !! | TTATCAAATTATAGATAGTT+TGG | - | chr3.4:88708413-88708432 | None:intergenic | 15.0% |
| !! | TTCAATATGAACTTAAAATA+TGG | + | chr3.4:88708995-88709014 | MS.gene41661:intron | 15.0% |
| !!! | AAACAATACTTTTATATCAA+AGG | + | chr3.4:88711280-88711299 | MS.gene41661:intron | 15.0% |
| !!! | TAAATTAGCATAATTTTAGA+AGG | - | chr3.4:88708173-88708192 | None:intergenic | 15.0% |
| !!! | TTAAGTTGATAAAAATAAGA+TGG | + | chr3.4:88710691-88710710 | MS.gene41661:intron | 15.0% |
| !! | AAAAAAAAACATAACTCCAT+TGG | - | chr3.4:88708251-88708270 | None:intergenic | 20.0% |
| !! | AAAAAAAACATAACTCCATT+GGG | - | chr3.4:88708250-88708269 | None:intergenic | 20.0% |
| !! | AATTAAGCTGTTTATCTAAA+TGG | - | chr3.4:88707343-88707362 | None:intergenic | 20.0% |
| !! | ACATTAAGTATGTAATTTCA+TGG | - | chr3.4:88710913-88710932 | None:intergenic | 20.0% |
| !! | AGATTTAAAGATTAATGAGT+TGG | + | chr3.4:88707787-88707806 | MS.gene41661:intron | 20.0% |
| !! | CCATAAAATATAAAACTCAA+CGG | + | chr3.4:88708684-88708703 | MS.gene41661:intron | 20.0% |
| !! | CCATAATAAACATAGTTTAT+GGG | - | chr3.4:88707320-88707339 | None:intergenic | 20.0% |
| !! | GAAATTAAAAGAAAAAGAGA+AGG | - | chr3.4:88709596-88709615 | None:intergenic | 20.0% |
| !! | TAAGTTCATATTGAAAAGAA+CGG | - | chr3.4:88708990-88709009 | None:intergenic | 20.0% |
| !! | TAGTAGTAAAACAAAACATA+AGG | - | chr3.4:88708042-88708061 | None:intergenic | 20.0% |
| !! | TATATAGTATATTGTCATGT+AGG | + | chr3.4:88710184-88710203 | MS.gene41661:intron | 20.0% |
| !! | TGATTATTCATTACAATTAC+AGG | - | chr3.4:88710723-88710742 | None:intergenic | 20.0% |
| !! | TGGTTTATGATAAAACATTA+TGG | + | chr3.4:88707819-88707838 | MS.gene41661:intron | 20.0% |
| !! | TGTAATTGTAATGAATAATC+AGG | + | chr3.4:88710722-88710741 | MS.gene41661:intron | 20.0% |
| !!! | AAAAGCGTTTTCTAATTATA+AGG | + | chr3.4:88711116-88711135 | MS.gene41661:intron | 20.0% |
| !!! | AAAGTGGCAAATTTTAAATT+TGG | + | chr3.4:88711162-88711181 | MS.gene41661:intron | 20.0% |
| !!! | AAGAATGGCATTATAAATTT+TGG | + | chr3.4:88711322-88711341 | MS.gene41661:intron | 20.0% |
| !!! | GGAGTTATGTTTTTTTTTTT+TGG | + | chr3.4:88708253-88708272 | MS.gene41661:intron | 20.0% |
| !!! | TTACTTTTGATAATTGATCT+AGG | + | chr3.4:88709937-88709956 | MS.gene41661:intron | 20.0% |
| !!! | TTCATTTTACATTGAAAATG+AGG | + | chr3.4:88709960-88709979 | MS.gene41661:intron | 20.0% |
| !!! | TTTTATCATTTCTTGCAATT+TGG | + | chr3.4:88710443-88710462 | MS.gene41661:CDS | 20.0% |
| !!! | TTTTTTTTTTGGAAAACACA+GGG | + | chr3.4:88708264-88708283 | MS.gene41661:intron | 20.0% |
| !!! | TTTTTTTTTTTGGAAAACAC+AGG | + | chr3.4:88708263-88708282 | MS.gene41661:intron | 20.0% |
| ! | AAAAAAACATAACTCCATTG+GGG | - | chr3.4:88708249-88708268 | None:intergenic | 25.0% |
| ! | AAGTTAATAGATCATTTCTC+AGG | + | chr3.4:88708481-88708500 | MS.gene41661:intron | 25.0% |
| ! | ACCAAGAATATGAAATTTCA+GGG | - | chr3.4:88710890-88710909 | None:intergenic | 25.0% |
| ! | ACTATCATAAAATGTTAAGC+TGG | - | chr3.4:88711008-88711027 | None:intergenic | 25.0% |
| ! | AGTATTGTTTCCTAAATCAA+AGG | - | chr3.4:88711270-88711289 | None:intergenic | 25.0% |
| ! | ATCACATTTAAATGAAGAAC+TGG | + | chr3.4:88711372-88711391 | MS.gene41661:intron | 25.0% |
| ! | ATTTCATGTATTCAGTATTC+TGG | + | chr3.4:88711441-88711460 | MS.gene41661:intron | 25.0% |
| ! | CCCATAAACTATGTTTATTA+TGG | + | chr3.4:88707317-88707336 | MS.gene41661:intron | 25.0% |
| ! | GAGAAGTTATGAAAATAAGT+TGG | + | chr3.4:88707913-88707932 | MS.gene41661:intron | 25.0% |
| ! | GAGTTTCTATTATAAAGAGA+GGG | - | chr3.4:88709439-88709458 | None:intergenic | 25.0% |
| ! | GATACACCCTATAAAAATAA+GGG | - | chr3.4:88710784-88710803 | None:intergenic | 25.0% |
| ! | GCCATAATAAACATAGTTTA+TGG | - | chr3.4:88707321-88707340 | None:intergenic | 25.0% |
| ! | GTATTGTTTCCTAAATCAAA+GGG | - | chr3.4:88711269-88711288 | None:intergenic | 25.0% |
| ! | GTGTTTATTTATTTACAGCA+TGG | - | chr3.4:88711584-88711603 | None:intergenic | 25.0% |
| ! | TACTGAATACATGAAATTTG+TGG | - | chr3.4:88711438-88711457 | None:intergenic | 25.0% |
| ! | TAGTTTATGAAGATGTCATA+AGG | + | chr3.4:88707939-88707958 | MS.gene41661:intron | 25.0% |
| ! | TCTACTTCACATTCATAAAT+TGG | - | chr3.4:88711494-88711513 | None:intergenic | 25.0% |
| ! | TGATACACCCTATAAAAATA+AGG | - | chr3.4:88710785-88710804 | None:intergenic | 25.0% |
| ! | TTATTTATTTACAGCATGGA+CGG | - | chr3.4:88711580-88711599 | None:intergenic | 25.0% |
| ! | TTTGGTTACAGAATAAACTT+TGG | + | chr3.4:88711180-88711199 | MS.gene41661:intron | 25.0% |
| !! | ACGATTGATGTTAATTTGAT+GGG | + | chr3.4:88707177-88707196 | MS.gene41661:CDS | 25.0% |
| !! | ATTGTTTTCATAAGCTATCT+TGG | + | chr3.4:88707891-88707910 | MS.gene41661:intron | 25.0% |
| !! | GCTTAACATTTTATGATAGT+AGG | + | chr3.4:88711008-88711027 | MS.gene41661:intron | 25.0% |
| !! | TAATGAGTTGGATTCAAATA+TGG | + | chr3.4:88707799-88707818 | MS.gene41661:intron | 25.0% |
| !! | TACGATTGATGTTAATTTGA+TGG | + | chr3.4:88707176-88707195 | MS.gene41661:CDS | 25.0% |
| !! | TTTTATAGGGTGTATCAATT+TGG | + | chr3.4:88710788-88710807 | MS.gene41661:intron | 25.0% |
| !! | TTTTCTAACTCTCTTAAGAA+TGG | + | chr3.4:88711307-88711326 | MS.gene41661:intron | 25.0% |
| !!! | AAATAACGGAATCAGTTTTT+TGG | + | chr3.4:88711086-88711105 | MS.gene41661:intron | 25.0% |
| !!! | ATTTTTTTAATGCGGAGTTT+AGG | + | chr3.4:88709722-88709741 | MS.gene41661:intron | 25.0% |
| !!! | CCGTTGAGTTTTATATTTTA+TGG | - | chr3.4:88708687-88708706 | None:intergenic | 25.0% |
| !!! | TGACTTTTTTTTCTTCATAC+AGG | + | chr3.4:88711708-88711727 | MS.gene41661:intron | 25.0% |
| !!! | TTTGCTCCCTTATTTTTATA+GGG | + | chr3.4:88710775-88710794 | MS.gene41661:intron | 25.0% |
| AAGTGTAAGTACAAACTGAA+AGG | + | chr3.4:88710302-88710321 | MS.gene41661:intron | 30.0% | |
| ACTTGTGGAAGGTAATAAAT+TGG | + | chr3.4:88709881-88709900 | MS.gene41661:intron | 30.0% | |
| ACTTTAGTGTAAGTGTACAT+TGG | + | chr3.4:88711211-88711230 | MS.gene41661:intron | 30.0% | |
| AGCTTATAGACAAACACTTA+TGG | - | chr3.4:88707377-88707396 | None:intergenic | 30.0% | |
| ATAAAAATAAGGGAGCAAAC+TGG | - | chr3.4:88710774-88710793 | None:intergenic | 30.0% | |
| ATATTGATCATGCAATGTAG+GGG | - | chr3.4:88708621-88708640 | None:intergenic | 30.0% | |
| ATCATTTCTTGCAATTTGGA+GGG | + | chr3.4:88710447-88710466 | MS.gene41661:CDS | 30.0% | |
| ATGAATTAGTGCTTTGTAGA+AGG | + | chr3.4:88711637-88711656 | MS.gene41661:intron | 30.0% | |
| ATGACAGAGAAAATGAGAAT+CGG | - | chr3.4:88708445-88708464 | None:intergenic | 30.0% | |
| ATTATTGAACACAGTTCATG+TGG | - | chr3.4:88708852-88708871 | None:intergenic | 30.0% | |
| ATTCAACAACAACACATCAA+TGG | - | chr3.4:88707100-88707119 | None:intergenic | 30.0% | |
| ATTCATTCAAGAAAGTTGTC+AGG | - | chr3.4:88709398-88709417 | None:intergenic | 30.0% | |
| ATTGTAATGAATAATCAGGC+TGG | + | chr3.4:88710726-88710745 | MS.gene41661:intron | 30.0% | |
| CATATTATGAGTGTGTCTTT+GGG | + | chr3.4:88710161-88710180 | MS.gene41661:intron | 30.0% | |
| CATATTGATCATGCAATGTA+GGG | - | chr3.4:88708622-88708641 | None:intergenic | 30.0% | |
| CGAGTTTCTATTATAAAGAG+AGG | - | chr3.4:88709440-88709459 | None:intergenic | 30.0% | |
| CTATTAACTTCTTCCAAACA+TGG | - | chr3.4:88708471-88708490 | None:intergenic | 30.0% | |
| CTGACAAAATCAGAACATTT+AGG | - | chr3.4:88710226-88710245 | None:intergenic | 30.0% | |
| CTTCCGTAAAATAATGATTG+TGG | + | chr3.4:88711553-88711572 | MS.gene41661:intron | 30.0% | |
| CTTTGGTTACAGTTTAAGAA+TGG | + | chr3.4:88711345-88711364 | MS.gene41661:intron | 30.0% | |
| GAAACAAAAGCAATAGAAGT+AGG | - | chr3.4:88707261-88707280 | None:intergenic | 30.0% | |
| GACCAAGAATATGAAATTTC+AGG | - | chr3.4:88710891-88710910 | None:intergenic | 30.0% | |
| GGGAACTTACTCTTAAATAA+CGG | + | chr3.4:88711072-88711091 | MS.gene41661:intron | 30.0% | |
| GTGAGAGAATAAAGGTTATT+AGG | - | chr3.4:88709482-88709501 | None:intergenic | 30.0% | |
| TAATTATGCCACTCTAGATT+GGG | + | chr3.4:88708191-88708210 | MS.gene41661:intron | 30.0% | |
| TACATAAATTTCCCAAGAGA+TGG | - | chr3.4:88710266-88710285 | None:intergenic | 30.0% | |
| TATCATTTCTTGCAATTTGG+AGG | + | chr3.4:88710446-88710465 | MS.gene41661:CDS | 30.0% | |
| TCATATTGATCATGCAATGT+AGG | - | chr3.4:88708623-88708642 | None:intergenic | 30.0% | |
| TCCCTGAAATTTCATATTCT+TGG | + | chr3.4:88710886-88710905 | MS.gene41661:intron | 30.0% | |
| TCTAATTATAAGGATCCACA+TGG | + | chr3.4:88711126-88711145 | MS.gene41661:intron | 30.0% | |
| TCTTTCCTATTCTTCATATG+AGG | - | chr3.4:88707231-88707250 | None:intergenic | 30.0% | |
| TGAACTTAAAATATGGCTCT+AGG | + | chr3.4:88709002-88709021 | MS.gene41661:intron | 30.0% | |
| TGATAGAAACCAGAAGATAA+AGG | + | chr3.4:88709235-88709254 | MS.gene41661:intron | 30.0% | |
| TGCTTTGTAGAAGGTTAATT+GGG | + | chr3.4:88711646-88711665 | MS.gene41661:intron | 30.0% | |
| TGTAATTTGATCCACTTAGT+GGG | + | chr3.4:88707842-88707861 | MS.gene41661:intron | 30.0% | |
| TGTAGAAAGTGAGAGAATAA+AGG | - | chr3.4:88709490-88709509 | None:intergenic | 30.0% | |
| TTAATTATGCCACTCTAGAT+TGG | + | chr3.4:88708190-88708209 | MS.gene41661:intron | 30.0% | |
| TTACTACTAACTAGTTCATG+TGG | + | chr3.4:88708053-88708072 | MS.gene41661:intron | 30.0% | |
| TTATTGAACACAGTTCATGT+GGG | - | chr3.4:88708851-88708870 | None:intergenic | 30.0% | |
| TTCAACAACAACACATCAAT+GGG | - | chr3.4:88707099-88707118 | None:intergenic | 30.0% | |
| TTCTATTATAAAGAGAGGGA+AGG | - | chr3.4:88709435-88709454 | None:intergenic | 30.0% | |
| TTTCAAATATCCACTTCCTT+GGG | + | chr3.4:88708913-88708932 | MS.gene41661:intron | 30.0% | |
| TTTCAGTTTGTACTTACACT+TGG | - | chr3.4:88710303-88710322 | None:intergenic | 30.0% | |
| ! | ACGTGACATTTTATAAAAGC+AGG | - | chr3.4:88710817-88710836 | None:intergenic | 30.0% |
| ! | ATGATTCAGATGATACGTTT+TGG | - | chr3.4:88709648-88709667 | None:intergenic | 30.0% |
| ! | ATTCACTTGAATGAGGATTT+TGG | - | chr3.4:88709184-88709203 | None:intergenic | 30.0% |
| ! | ATTCTTAATGGCATTTGTTG+AGG | + | chr3.4:88710515-88710534 | MS.gene41661:CDS | 30.0% |
| ! | ATTTTGTGCAGAAACCAAAT+GGG | - | chr3.4:88708527-88708546 | None:intergenic | 30.0% |
| ! | CGTGACATTTTATAAAAGCA+GGG | - | chr3.4:88710816-88710835 | None:intergenic | 30.0% |
| ! | GATTTTCATTCACTTGAATG+AGG | - | chr3.4:88709191-88709210 | None:intergenic | 30.0% |
| ! | GTGACATTTTATAAAAGCAG+GGG | - | chr3.4:88710815-88710834 | None:intergenic | 30.0% |
| ! | TATAGGGAAGGTATAGAAAA+TGG | - | chr3.4:88708315-88708334 | None:intergenic | 30.0% |
| ! | TATTTGAAATCCACTTGGTT+TGG | + | chr3.4:88708818-88708837 | MS.gene41661:intron | 30.0% |
| !! | CACAAAACTCTAAAATAGGA+AGG | - | chr3.4:88709125-88709144 | None:intergenic | 30.0% |
| !! | GGACCACAATCATTATTTTA+CGG | - | chr3.4:88711559-88711578 | None:intergenic | 30.0% |
| !!! | AATTTTGAGAGCACTTATAG+TGG | + | chr3.4:88708370-88708389 | MS.gene41661:intron | 30.0% |
| !!! | CTATTTTAGAGTTTTGTGGA+GGG | + | chr3.4:88709127-88709146 | MS.gene41661:intron | 30.0% |
| !!! | CTTCCTATTTTAGAGTTTTG+TGG | + | chr3.4:88709123-88709142 | MS.gene41661:intron | 30.0% |
| !!! | GGCATTATAAATTTTGGCTT+TGG | + | chr3.4:88711328-88711347 | MS.gene41661:intron | 30.0% |
| !!! | GTTTGCTCCCTTATTTTTAT+AGG | + | chr3.4:88710774-88710793 | MS.gene41661:intron | 30.0% |
| !!! | TATTTTAGAGTTTTGTGGAG+GGG | + | chr3.4:88709128-88709147 | MS.gene41661:intron | 30.0% |
| !!! | TGTGTTGTGATTTTTAGTGT+GGG | + | chr3.4:88708088-88708107 | MS.gene41661:intron | 30.0% |
| !!! | TTGTGTTGTGATTTTTAGTG+TGG | + | chr3.4:88708087-88708106 | MS.gene41661:intron | 30.0% |
| AAAAGAGAAGGGAAGATGAT+AGG | - | chr3.4:88709584-88709603 | None:intergenic | 35.0% | |
| AAACAATGTCGTGGCATAAT+TGG | - | chr3.4:88708146-88708165 | None:intergenic | 35.0% | |
| AAACTGCACTAGTGTGAATT+GGG | + | chr3.4:88709519-88709538 | MS.gene41661:intron | 35.0% | |
| AAAGAGAAGGGAAGATGATA+GGG | - | chr3.4:88709583-88709602 | None:intergenic | 35.0% | |
| AAATTTAGCCCAATCTAGAG+TGG | - | chr3.4:88708202-88708221 | None:intergenic | 35.0% | |
| AACAAAACATAAGGCCAGTT+TGG | - | chr3.4:88708033-88708052 | None:intergenic | 35.0% | |
| AGAAAAGTGAGGAACTAAGT+TGG | + | chr3.4:88711051-88711070 | MS.gene41661:intron | 35.0% | |
| AGAAACTCGACTAGATTTCA+GGG | + | chr3.4:88709451-88709470 | MS.gene41661:intron | 35.0% | |
| AGAAATGACACCATTAGAGA+GGG | + | chr3.4:88707518-88707537 | MS.gene41661:intron | 35.0% | |
| ATAGTCAGATCAAAAGAGGT+AGG | + | chr3.4:88707746-88707765 | MS.gene41661:intron | 35.0% | |
| CAGTCTGACAAAACTTATGT+CGG | + | chr3.4:88707984-88708003 | MS.gene41661:intron | 35.0% | |
| CCAAAGACACACTCATAATA+TGG | - | chr3.4:88710163-88710182 | None:intergenic | 35.0% | |
| CCATATTATGAGTGTGTCTT+TGG | + | chr3.4:88710160-88710179 | MS.gene41661:intron | 35.0% | |
| CCATTTGCAGAAATAGTACT+CGG | - | chr3.4:88709267-88709286 | None:intergenic | 35.0% | |
| CTTTGCCTCATATGAAGAAT+AGG | + | chr3.4:88707223-88707242 | MS.gene41661:CDS | 35.0% | |
| GAAAAGTGAGGAACTAAGTT+GGG | + | chr3.4:88711052-88711071 | MS.gene41661:intron | 35.0% | |
| GAAAATGAGGTAAGTAACCT+TGG | + | chr3.4:88709973-88709992 | MS.gene41661:intron | 35.0% | |
| GAAGACGACAATGGATAAAA+TGG | - | chr3.4:88709215-88709234 | None:intergenic | 35.0% | |
| GAAGAGATAATCTAGTGATG+TGG | + | chr3.4:88709689-88709708 | MS.gene41661:intron | 35.0% | |
| GAGAAGACATGTAGATTCTA+TGG | + | chr3.4:88707699-88707718 | MS.gene41661:intron | 35.0% | |
| GAGCTTAAAGCTCTTACAAT+AGG | + | chr3.4:88709289-88709308 | MS.gene41661:intron | 35.0% | |
| GATGTTAGTCCTTGACAATT+TGG | + | chr3.4:88711233-88711252 | MS.gene41661:intron | 35.0% | |
| GCTTAACAACAACCTCAATA+TGG | + | chr3.4:88709995-88710014 | MS.gene41661:intron | 35.0% | |
| GCTTATTCAGCCAGTAAATT+TGG | + | chr3.4:88709765-88709784 | MS.gene41661:CDS | 35.0% | |
| GGCAATTGCAACTATTGAAA+TGG | + | chr3.4:88708728-88708747 | MS.gene41661:intron | 35.0% | |
| GTGCTTTGTAGAAGGTTAAT+TGG | + | chr3.4:88711645-88711664 | MS.gene41661:intron | 35.0% | |
| GTGTAATTTGATCCACTTAG+TGG | + | chr3.4:88707841-88707860 | MS.gene41661:intron | 35.0% | |
| GTGTCATATTACTAATGAGC+TGG | + | chr3.4:88708549-88708568 | MS.gene41661:intron | 35.0% | |
| GTTTCAAATATCCACTTCCT+TGG | + | chr3.4:88708912-88708931 | MS.gene41661:intron | 35.0% | |
| TAACTAGTTCATGTGGTTGT+TGG | + | chr3.4:88708060-88708079 | MS.gene41661:intron | 35.0% | |
| TACCTTCCCTATATATCGAT+TGG | + | chr3.4:88708322-88708341 | MS.gene41661:intron | 35.0% | |
| TAGAAACTCGACTAGATTTC+AGG | + | chr3.4:88709450-88709469 | MS.gene41661:intron | 35.0% | |
| TAGAAATGACACCATTAGAG+AGG | + | chr3.4:88707517-88707536 | MS.gene41661:intron | 35.0% | |
| TAGCAGCCAATCGATATATA+GGG | - | chr3.4:88708331-88708350 | None:intergenic | 35.0% | |
| TAGTCAGATCAAAAGAGGTA+GGG | + | chr3.4:88707747-88707766 | MS.gene41661:intron | 35.0% | |
| TCAATATGGATGTGGAATCA+GGG | + | chr3.4:88710009-88710028 | MS.gene41661:intron | 35.0% | |
| TCTATGATGTCTTAAACCCT+CGG | + | chr3.4:88709028-88709047 | MS.gene41661:intron | 35.0% | |
| TCTCTGTCATTAACCATGTT+TGG | + | chr3.4:88708455-88708474 | MS.gene41661:intron | 35.0% | |
| TGAAGTAGGGATATTTGATG+CGG | + | chr3.4:88707026-88707045 | MS.gene41661:CDS | 35.0% | |
| TGACACATCATAGAAAAGTG+AGG | + | chr3.4:88711040-88711059 | MS.gene41661:intron | 35.0% | |
| TGGAAACTGTCAAACAAAAG+TGG | + | chr3.4:88711146-88711165 | MS.gene41661:intron | 35.0% | |
| TTAGCAGCCAATCGATATAT+AGG | - | chr3.4:88708332-88708351 | None:intergenic | 35.0% | |
| TTCAAATATCCACTTCCTTG+GGG | + | chr3.4:88708914-88708933 | MS.gene41661:intron | 35.0% | |
| TTTCATAAAACCAGAAGAGG+CGG | - | chr3.4:88710376-88710395 | None:intergenic | 35.0% | |
| TTTCTATCAGAAGACGACAA+TGG | - | chr3.4:88709224-88709243 | None:intergenic | 35.0% | |
| TTTGGAGAAATTGATCTCCA+TGG | + | chr3.4:88709057-88709076 | MS.gene41661:intron | 35.0% | |
| TTTGTTTGACAGTTTCCATG+TGG | - | chr3.4:88711144-88711163 | None:intergenic | 35.0% | |
| ! | AATCAGGCTGGTTATAGATA+GGG | + | chr3.4:88710738-88710757 | MS.gene41661:intron | 35.0% |
| ! | ACCAAGTGGATTTCAAATAG+TGG | - | chr3.4:88708817-88708836 | None:intergenic | 35.0% |
| ! | AGCTTTATGAGCAACTTCAT+CGG | - | chr3.4:88710400-88710419 | None:intergenic | 35.0% |
| ! | AGTGTTTTATGCGTTGGAAT+TGG | + | chr3.4:88707125-88707144 | MS.gene41661:CDS | 35.0% |
| ! | ATTATGCCACGACATTGTTT+TGG | + | chr3.4:88708146-88708165 | MS.gene41661:intron | 35.0% |
| ! | ATTGAAAAGAACGGTGTTGA+TGG | - | chr3.4:88708981-88709000 | None:intergenic | 35.0% |
| ! | CATCTGAATCATTAGCCTAT+AGG | + | chr3.4:88709656-88709675 | MS.gene41661:intron | 35.0% |
| ! | CATTTTGTGCAGAAACCAAA+TGG | - | chr3.4:88708528-88708547 | None:intergenic | 35.0% |
| ! | CCAAGTGGATTTCAAATAGT+GGG | - | chr3.4:88708816-88708835 | None:intergenic | 35.0% |
| ! | GATGTGTTGTTGTTGAATCA+TGG | + | chr3.4:88707102-88707121 | MS.gene41661:CDS | 35.0% |
| ! | GTTGCTCATAAAGCTTTTGA+TGG | + | chr3.4:88710405-88710424 | MS.gene41661:CDS | 35.0% |
| ! | TAATCAGGCTGGTTATAGAT+AGG | + | chr3.4:88710737-88710756 | MS.gene41661:intron | 35.0% |
| ! | TAGAGAGCATGATAGAAAGA+TGG | + | chr3.4:88708873-88708892 | MS.gene41661:intron | 35.0% |
| ! | TATTTGTTAGAAAGCCCCAA+TGG | + | chr3.4:88708232-88708251 | MS.gene41661:intron | 35.0% |
| ! | TTATGCCACGACATTGTTTT+GGG | + | chr3.4:88708147-88708166 | MS.gene41661:intron | 35.0% |
| ! | TTGATGGTTACCAACATAAC+AGG | - | chr3.4:88708965-88708984 | None:intergenic | 35.0% |
| ! | TTTTAATGCGGAGTTTAGGT+GGG | + | chr3.4:88709726-88709745 | MS.gene41661:intron | 35.0% |
| ! | TTTTGGATGTTGGAATGCAA+AGG | - | chr3.4:88709631-88709650 | None:intergenic | 35.0% |
| ! | TTTTTAATGCGGAGTTTAGG+TGG | + | chr3.4:88709725-88709744 | MS.gene41661:intron | 35.0% |
| !! | AAGTTGATTTGACACCCATT+TGG | + | chr3.4:88708510-88708529 | MS.gene41661:intron | 35.0% |
| !! | AGATGATACGTTTTGGATGT+TGG | - | chr3.4:88709641-88709660 | None:intergenic | 35.0% |
| !! | CCTCCACAAAACTCTAAAAT+AGG | - | chr3.4:88709129-88709148 | None:intergenic | 35.0% |
| !! | TAAGTTTTGTCAGACTGTTC+CGG | - | chr3.4:88707981-88708000 | None:intergenic | 35.0% |
| !! | TCAAATAGGTTGATCCAAAC+TGG | + | chr3.4:88708016-88708035 | MS.gene41661:intron | 35.0% |
| !! | TTAGAGTTGACTCGATAAAG+TGG | + | chr3.4:88708585-88708604 | MS.gene41661:intron | 35.0% |
| !!! | ATTTTAGAGTTTTGTGGAGG+GGG | + | chr3.4:88709129-88709148 | MS.gene41661:intron | 35.0% |
| !!! | CCTATTTTAGAGTTTTGTGG+AGG | + | chr3.4:88709126-88709145 | MS.gene41661:intron | 35.0% |
| AAAGTTGTCAGGAGTCAGTT+AGG | - | chr3.4:88709387-88709406 | None:intergenic | 40.0% | |
| AAATATCCCTACTTCAACGC+CGG | - | chr3.4:88707022-88707041 | None:intergenic | 40.0% | |
| AGACTGTTCCGGATAACTTA+CGG | - | chr3.4:88707970-88707989 | None:intergenic | 40.0% | |
| AGATGGCACAAAATGGTACT+TGG | - | chr3.4:88710249-88710268 | None:intergenic | 40.0% | |
| AGCCAATCGATATATAGGGA+AGG | - | chr3.4:88708327-88708346 | None:intergenic | 40.0% | |
| AGGTGTTTCCGTAAGTTATC+CGG | + | chr3.4:88707959-88707978 | MS.gene41661:intron | 40.0% | |
| AGTCAGATCAAAAGAGGTAG+GGG | + | chr3.4:88707748-88707767 | MS.gene41661:intron | 40.0% | |
| CAACAACCTCAATATGGATG+TGG | + | chr3.4:88710001-88710020 | MS.gene41661:intron | 40.0% | |
| CATAGAACTCTGGTGTACTT+TGG | - | chr3.4:88709323-88709342 | None:intergenic | 40.0% | |
| CATTAAGAATGACCTCTGAG+GGG | - | chr3.4:88710505-88710524 | None:intergenic | 40.0% | |
| CCATTAAGAATGACCTCTGA+GGG | - | chr3.4:88710506-88710525 | None:intergenic | 40.0% | |
| CGGTTCTTACCTTTATCTTC+TGG | - | chr3.4:88709247-88709266 | None:intergenic | 40.0% | |
| CTATGATGTCTTAAACCCTC+GGG | + | chr3.4:88709029-88709048 | MS.gene41661:intron | 40.0% | |
| CTCAATATGGATGTGGAATC+AGG | + | chr3.4:88710008-88710027 | MS.gene41661:intron | 40.0% | |
| CTGACAAAACTTATGTCGGT+AGG | + | chr3.4:88707988-88708007 | MS.gene41661:intron | 40.0% | |
| CTGATTCCACATCCATATTG+AGG | - | chr3.4:88710010-88710029 | None:intergenic | 40.0% | |
| GAAACTGCACTAGTGTGAAT+TGG | + | chr3.4:88709518-88709537 | MS.gene41661:intron | 40.0% | |
| GACATGTAGATTCTATGGTC+AGG | + | chr3.4:88707704-88707723 | MS.gene41661:intron | 40.0% | |
| GAGGATAGTCAGATCAAAAG+AGG | + | chr3.4:88707742-88707761 | MS.gene41661:intron | 40.0% | |
| GCATTGCAACAAGAGGTTAT+AGG | + | chr3.4:88709807-88709826 | MS.gene41661:CDS | 40.0% | |
| GGAGTTTAGGTGGGAATTTA+TGG | + | chr3.4:88709735-88709754 | MS.gene41661:intron | 40.0% | |
| GGATAAACCTGAAGTTGCTA+GGG | - | chr3.4:88710484-88710503 | None:intergenic | 40.0% | |
| GGATGTAAGAGACTATGATG+CGG | + | chr3.4:88707047-88707066 | MS.gene41661:CDS | 40.0% | |
| GGCTTTCATAAAACCAGAAG+AGG | - | chr3.4:88710379-88710398 | None:intergenic | 40.0% | |
| TATGATGTCTTAAACCCTCG+GGG | + | chr3.4:88709030-88709049 | MS.gene41661:intron | 40.0% | |
| TCAGTTAGGAAAGTTCTCTC+TGG | - | chr3.4:88709373-88709392 | None:intergenic | 40.0% | |
| TGCGTTGGAATTGGAGAAAA+TGG | + | chr3.4:88707134-88707153 | MS.gene41661:CDS | 40.0% | |
| TGGAATGCAAAGGAAGTGAA+GGG | - | chr3.4:88709621-88709640 | None:intergenic | 40.0% | |
| TTATTACCTTCCACAAGTCC+AGG | - | chr3.4:88709879-88709898 | None:intergenic | 40.0% | |
| TTGATCCACTTAGTGGGATA+AGG | + | chr3.4:88707848-88707867 | MS.gene41661:intron | 40.0% | |
| TTGGAATGCAAAGGAAGTGA+AGG | - | chr3.4:88709622-88709641 | None:intergenic | 40.0% | |
| TTTGTTGAGGTTATTGCTGC+TGG | + | chr3.4:88710528-88710547 | MS.gene41661:CDS | 40.0% | |
| ! | AATGTTTTACCCCAAGGAAG+TGG | - | chr3.4:88708926-88708945 | None:intergenic | 40.0% |
| ! | ACACTAGTGCAGTTTCTAGA+AGG | - | chr3.4:88709514-88709533 | None:intergenic | 40.0% |
| ! | ACCATTTTGTGCCATCTCTT+GGG | + | chr3.4:88710252-88710271 | MS.gene41661:intron | 40.0% |
| ! | ACTCTGGTGTACTTTGGTTT+AGG | - | chr3.4:88709317-88709336 | None:intergenic | 40.0% |
| ! | AGGAAAGTTCTCTCTGGTTT+AGG | - | chr3.4:88709367-88709386 | None:intergenic | 40.0% |
| ! | CAACATCTCAACGGCAATTT+TGG | + | chr3.4:88708776-88708795 | MS.gene41661:intron | 40.0% |
| ! | CACTTGAATGAGGATTTTGG+AGG | - | chr3.4:88709181-88709200 | None:intergenic | 40.0% |
| ! | CCCACTATTTGAAATCCACT+TGG | + | chr3.4:88708813-88708832 | MS.gene41661:intron | 40.0% |
| ! | GATATTTGAAACAACGACGC+TGG | - | chr3.4:88708904-88708923 | None:intergenic | 40.0% |
| ! | GGTATGGAAGTATAGAGAAG+TGG | + | chr3.4:88710589-88710608 | MS.gene41661:CDS | 40.0% |
| ! | GTTCTTAGCTTCTTCGAGTT+TGG | - | chr3.4:88706983-88707002 | None:intergenic | 40.0% |
| ! | TACCATTTTGTGCCATCTCT+TGG | + | chr3.4:88710251-88710270 | MS.gene41661:intron | 40.0% |
| ! | TTGAGGTTGTTGTTAAGCCA+AGG | - | chr3.4:88709993-88710012 | None:intergenic | 40.0% |
| !! | AGTTGACTCGATAAAGTGGA+TGG | + | chr3.4:88708589-88708608 | MS.gene41661:intron | 40.0% |
| !! | CCGAGTACTATTTCTGCAAA+TGG | + | chr3.4:88709264-88709283 | MS.gene41661:intron | 40.0% |
| !! | CCTTGACAATTTGGTTTGCA+CGG | + | chr3.4:88711242-88711261 | MS.gene41661:intron | 40.0% |
| !! | GCTTTTGTTTCATCACAAGC+TGG | + | chr3.4:88707270-88707289 | MS.gene41661:CDS | 40.0% |
| !! | GGTGTTACTTTCTTCATGCT+GGG | + | chr3.4:88711667-88711686 | MS.gene41661:intron | 40.0% |
| !! | TCAACGGCAATTTTGGTATG+TGG | + | chr3.4:88708783-88708802 | MS.gene41661:intron | 40.0% |
| !! | TCATGGAGTGTTTTATGCGT+TGG | + | chr3.4:88707119-88707138 | MS.gene41661:CDS | 40.0% |
| AAAATCATTGCCGCCTCTTC+TGG | + | chr3.4:88710363-88710382 | MS.gene41661:CDS | 45.0% | |
| AACATAACAGGCAACACCAC+TGG | - | chr3.4:88708953-88708972 | None:intergenic | 45.0% | |
| AAGAAAGTGGCTGATGAAGC+TGG | + | chr3.4:88707072-88707091 | MS.gene41661:CDS | 45.0% | |
| AAGCTGGTCAGGTATGGAAT+TGG | + | chr3.4:88707286-88707305 | MS.gene41661:intron | 45.0% | |
| AAGTAAGCCTAGCCGAGATT+AGG | + | chr3.4:88707453-88707472 | MS.gene41661:intron | 45.0% | |
| AATGACACCATTAGAGAGGG+AGG | + | chr3.4:88707521-88707540 | MS.gene41661:intron | 45.0% | |
| AATGCAAAGGAAGTGAAGGG+AGG | - | chr3.4:88709618-88709637 | None:intergenic | 45.0% | |
| ACTCCAGTGACAACTAAGTG+AGG | - | chr3.4:88710845-88710864 | None:intergenic | 45.0% | |
| AGGTAGGGGGAGAATCTATT+AGG | + | chr3.4:88707762-88707781 | MS.gene41661:intron | 45.0% | |
| ATGACACCATTAGAGAGGGA+GGG | + | chr3.4:88707522-88707541 | MS.gene41661:intron | 45.0% | |
| CACGCTCTACAACATCTCAA+CGG | + | chr3.4:88708767-88708786 | MS.gene41661:intron | 45.0% | |
| CACTATGTTTCCAGTGGAAC+TGG | + | chr3.4:88710568-88710587 | MS.gene41661:CDS | 45.0% | |
| CAGGAGAGTAGATGAGATTG+AGG | + | chr3.4:88707723-88707742 | MS.gene41661:intron | 45.0% | |
| CATTCAAGCACTTCCATAGC+AGG | - | chr3.4:88710035-88710054 | None:intergenic | 45.0% | |
| CCAACGCAACATCCTAATCT+CGG | - | chr3.4:88707468-88707487 | None:intergenic | 45.0% | |
| CCCTCAGAGGTCATTCTTAA+TGG | + | chr3.4:88710503-88710522 | MS.gene41661:CDS | 45.0% | |
| CCGTGCAAACCAAATTGTCA+AGG | - | chr3.4:88711245-88711264 | None:intergenic | 45.0% | |
| CGGTTTCATATTTGCCCTTG+CGG | + | chr3.4:88708704-88708723 | MS.gene41661:intron | 45.0% | |
| CTATGATGCGGTGAAGAAAG+TGG | + | chr3.4:88707059-88707078 | MS.gene41661:CDS | 45.0% | |
| CTCCAGTGACAACTAAGTGA+GGG | - | chr3.4:88710844-88710863 | None:intergenic | 45.0% | |
| CTTTATCCTCCATGCACACA+TGG | - | chr3.4:88709085-88709104 | None:intergenic | 45.0% | |
| GATGTGTGGTAAGACTAGAC+GGG | + | chr3.4:88707487-88707506 | MS.gene41661:intron | 45.0% | |
| GCAATGCTTCTGCTAAACCA+CGG | - | chr3.4:88709794-88709813 | None:intergenic | 45.0% | |
| GCCATTAAGAATGACCTCTG+AGG | - | chr3.4:88710507-88710526 | None:intergenic | 45.0% | |
| GGATGTGTGGTAAGACTAGA+CGG | + | chr3.4:88707486-88707505 | MS.gene41661:intron | 45.0% | |
| GGGATAAACCTGAAGTTGCT+AGG | - | chr3.4:88710485-88710504 | None:intergenic | 45.0% | |
| GGGTAAAACATTGCTTCCAG+TGG | + | chr3.4:88708934-88708953 | MS.gene41661:intron | 45.0% | |
| GGTAGGAGTTCATAGAACTC+TGG | - | chr3.4:88709333-88709352 | None:intergenic | 45.0% | |
| GTCAGATCAAAAGAGGTAGG+GGG | + | chr3.4:88707749-88707768 | MS.gene41661:intron | 45.0% | |
| GTCGGTAGGTAAGCTCAAAT+AGG | + | chr3.4:88708002-88708021 | MS.gene41661:intron | 45.0% | |
| GTGAATTGGGCCCAATGATT+GGG | + | chr3.4:88709532-88709551 | MS.gene41661:intron | 45.0% | |
| TACTTCCATACCAGTTCCAC+TGG | - | chr3.4:88710581-88710600 | None:intergenic | 45.0% | |
| TAGAGAAGTGGCACAAGCAA+AGG | + | chr3.4:88710601-88710620 | MS.gene41661:CDS | 45.0% | |
| TATGAACTCCTACCAGAGCT+AGG | + | chr3.4:88709339-88709358 | MS.gene41661:intron | 45.0% | |
| TCCCAAGAGATGGCACAAAA+TGG | - | chr3.4:88710256-88710275 | None:intergenic | 45.0% | |
| TCTGATATTCCCTCCAGACA+CGG | + | chr3.4:88709848-88709867 | MS.gene41661:CDS | 45.0% | |
| TCTTCGATAGCACTGCCTAT+AGG | - | chr3.4:88709674-88709693 | None:intergenic | 45.0% | |
| TGAGATGTTGTAGAGCGTGT+TGG | - | chr3.4:88708766-88708785 | None:intergenic | 45.0% | |
| TGTGAATTGGGCCCAATGAT+TGG | + | chr3.4:88709531-88709550 | MS.gene41661:intron | 45.0% | |
| TGTTTCATCACAAGCTGGTC+AGG | + | chr3.4:88707275-88707294 | MS.gene41661:CDS | 45.0% | |
| TGTTTCCAGTGGAACTGGTA+TGG | + | chr3.4:88710573-88710592 | MS.gene41661:CDS | 45.0% | |
| TTGCAGCACTATGTTTCCAG+TGG | + | chr3.4:88710562-88710581 | MS.gene41661:CDS | 45.0% | |
| TTTCATATTTGCCCTTGCGG+TGG | + | chr3.4:88708707-88708726 | MS.gene41661:intron | 45.0% | |
| ! | AGAAGAGGCGGCAATGATTT+TGG | - | chr3.4:88710364-88710383 | None:intergenic | 45.0% |
| ! | AGCTTCTTCGAGTTTGGTGA+GGG | - | chr3.4:88706977-88706996 | None:intergenic | 45.0% |
| ! | GGAAGCAATGTTTTACCCCA+AGG | - | chr3.4:88708932-88708951 | None:intergenic | 45.0% |
| ! | TAGCTTCTTCGAGTTTGGTG+AGG | - | chr3.4:88706978-88706997 | None:intergenic | 45.0% |
| ! | TCAAGCCTTATCCCACTAAG+TGG | - | chr3.4:88707856-88707875 | None:intergenic | 45.0% |
| ! | TTGCACGGTCCCTTTGATTT+AGG | + | chr3.4:88711257-88711276 | MS.gene41661:intron | 45.0% |
| !! | AGCAGAAGCATTGCAACAAG+AGG | + | chr3.4:88709800-88709819 | MS.gene41661:CDS | 45.0% |
| !! | AGTGGTGTTGCCTGTTATGT+TGG | + | chr3.4:88708952-88708971 | MS.gene41661:intron | 45.0% |
| !! | GCAATGATTTTGGTGAGCTC+TGG | - | chr3.4:88710354-88710373 | None:intergenic | 45.0% |
| !! | GCTTTTGATGGCATAAGACG+TGG | + | chr3.4:88710417-88710436 | MS.gene41661:CDS | 45.0% |
| !! | GGGTGTTACTTTCTTCATGC+TGG | + | chr3.4:88711666-88711685 | MS.gene41661:intron | 45.0% |
| !!! | TTTTATTTATTTTTTTAATG+CGG | + | chr3.4:88709714-88709733 | MS.gene41661:intron | 5.0% |
| AACTCTGTCAAACACGCCAC+CGG | + | chr3.4:88707000-88707019 | MS.gene41661:CDS | 50.0% | |
| ACCACGGAGGCCAAATTTAC+TGG | - | chr3.4:88709778-88709797 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr3.4:88707577-88707596 | MS.gene41661:intron | 50.0% | |
| AGGATGTTGCGTTGGATGTG+TGG | + | chr3.4:88707473-88707492 | MS.gene41661:intron | 50.0% | |
| AGTTGCAATTGCCACCGCAA+GGG | - | chr3.4:88708721-88708740 | None:intergenic | 50.0% | |
| ATGCTTCTGCTAAACCACGG+AGG | - | chr3.4:88709791-88709810 | None:intergenic | 50.0% | |
| ATTTCTCCAAAACGTCCCCG+AGG | - | chr3.4:88709048-88709067 | None:intergenic | 50.0% | |
| CATCACAAGCTGGTCAGGTA+TGG | + | chr3.4:88707280-88707299 | MS.gene41661:intron | 50.0% | |
| CCGAGATTAGGATGTTGCGT+TGG | + | chr3.4:88707465-88707484 | MS.gene41661:intron | 50.0% | |
| CGTGTGAGAGCCCAATCATT+GGG | - | chr3.4:88709545-88709564 | None:intergenic | 50.0% | |
| GAAGGCCCAAAACAATGTCG+TGG | - | chr3.4:88708155-88708174 | None:intergenic | 50.0% | |
| GATACTCCTGGACTTGTGGA+AGG | + | chr3.4:88709870-88709889 | MS.gene41661:CDS | 50.0% | |
| GCAACATCCTAATCTCGGCT+AGG | - | chr3.4:88707463-88707482 | None:intergenic | 50.0% | |
| GCGTTATCCCTAGCAACTTC+AGG | + | chr3.4:88710474-88710493 | MS.gene41661:CDS | 50.0% | |
| GTCCCTCACTTAGTTGTCAC+TGG | + | chr3.4:88710839-88710858 | MS.gene41661:intron | 50.0% | |
| TAGTTGCAATTGCCACCGCA+AGG | - | chr3.4:88708722-88708741 | None:intergenic | 50.0% | |
| TCGTGTGAGAGCCCAATCAT+TGG | - | chr3.4:88709546-88709565 | None:intergenic | 50.0% | |
| TTTCTCCAAAACGTCCCCGA+GGG | - | chr3.4:88709047-88709066 | None:intergenic | 50.0% | |
| ! | CTTCAGGTTTATCCCCTCAG+AGG | + | chr3.4:88710490-88710509 | MS.gene41661:CDS | 50.0% |
| ! | TTAAACCCTCGGGGACGTTT+TGG | + | chr3.4:88709039-88709058 | MS.gene41661:intron | 50.0% |
| !! | TTTAGGAGCCTAGCTCTGGT+AGG | - | chr3.4:88709350-88709369 | None:intergenic | 50.0% |
| ACACCATTAGAGAGGGAGGG+AGG | + | chr3.4:88707525-88707544 | MS.gene41661:intron | 55.0% | |
| ATGGAGCCATGTGTGCATGG+AGG | + | chr3.4:88709076-88709095 | MS.gene41661:intron | 55.0% | |
| ATTAGAGAGGGAGGGAGGGA+GGG | + | chr3.4:88707530-88707549 | MS.gene41661:intron | 55.0% | |
| CACCATTAGAGAGGGAGGGA+GGG | + | chr3.4:88707526-88707545 | MS.gene41661:intron | 55.0% | |
| CACGGATACTCCTGGACTTG+TGG | + | chr3.4:88709866-88709885 | MS.gene41661:CDS | 55.0% | |
| CTGGTTTAGGAGCCTAGCTC+TGG | - | chr3.4:88709354-88709373 | None:intergenic | 55.0% | |
| GATTGGGCTCTCACACGAAC+TGG | + | chr3.4:88709548-88709567 | MS.gene41661:intron | 55.0% | |
| GCCAGTAAATTTGGCCTCCG+TGG | + | chr3.4:88709774-88709793 | MS.gene41661:CDS | 55.0% | |
| GGGTCTGTCACCAAACCAAG+TGG | - | chr3.4:88708831-88708850 | None:intergenic | 55.0% | |
| GTGGAGGGGGAAGCAAATCA+GGG | + | chr3.4:88709142-88709161 | MS.gene41661:intron | 55.0% | |
| TATCCCTACTTCAACGCCGG+TGG | - | chr3.4:88707019-88707038 | None:intergenic | 55.0% | |
| TCCATGCACACATGGCTCCA+TGG | - | chr3.4:88709077-88709096 | None:intergenic | 55.0% | |
| TCCATGGAGCCATGTGTGCA+TGG | + | chr3.4:88709073-88709092 | MS.gene41661:intron | 55.0% | |
| TGTGGAATCAGGGCCTGCTA+TGG | + | chr3.4:88710019-88710038 | MS.gene41661:intron | 55.0% | |
| TGTGGAGGGGGAAGCAAATC+AGG | + | chr3.4:88709141-88709160 | MS.gene41661:intron | 55.0% | |
| ! | AGGGAAGATGATAGGGCACC+AGG | - | chr3.4:88709576-88709595 | None:intergenic | 55.0% |
| ! | GGGAAGATGATAGGGCACCA+GGG | - | chr3.4:88709575-88709594 | None:intergenic | 55.0% |
| !! | AGTCCAGGAGTATCCGTGTC+TGG | - | chr3.4:88709864-88709883 | None:intergenic | 55.0% |
| !! | CAGGAGTATCCGTGTCTGGA+GGG | - | chr3.4:88709860-88709879 | None:intergenic | 55.0% |
| CATTAGAGAGGGAGGGAGGG+AGG | + | chr3.4:88707529-88707548 | MS.gene41661:intron | 60.0% | |
| CCTCCAGACACGGATACTCC+TGG | + | chr3.4:88709858-88709877 | MS.gene41661:CDS | 60.0% | |
| CTCCCTCCCTCCCTCTCTAA+TGG | - | chr3.4:88707531-88707550 | None:intergenic | 60.0% | |
| CTCTCACACGAACTGGACCC+TGG | + | chr3.4:88709555-88709574 | MS.gene41661:intron | 60.0% | |
| GAGAGAGAGAGAGAGAGGCG+AGG | + | chr3.4:88707656-88707675 | MS.gene41661:intron | 60.0% | |
| GAGAGAGAGAGGCGAGGCTT+TGG | + | chr3.4:88707662-88707681 | MS.gene41661:intron | 60.0% | |
| ! | ACGCCACCGGCGTTGAAGTA+GGG | + | chr3.4:88707013-88707032 | MS.gene41661:CDS | 60.0% |
| !! | CCAGGAGTATCCGTGTCTGG+AGG | - | chr3.4:88709861-88709880 | None:intergenic | 60.0% |
| ! | CACGCCACCGGCGTTGAAGT+AGG | + | chr3.4:88707012-88707031 | MS.gene41661:CDS | 65.0% |
| AGAGAGGGAGGGAGGGAGGG+AGG | + | chr3.4:88707533-88707552 | MS.gene41661:intron | 70.0% | |
| GAGAGGGAGGGAGGGAGGGA+GGG | + | chr3.4:88707534-88707553 | MS.gene41661:intron | 70.0% | |
| AGGGAGGGAGGGAGGGAGGG+AGG | + | chr3.4:88707537-88707556 | MS.gene41661:intron | 75.0% | |
| GGGAGGGAGGGAGGGAGGGA+GGG | + | chr3.4:88707538-88707557 | MS.gene41661:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 88706964 | 88711749 | 88706964 | ID=MS.gene41661 |
| chr3.4 | mRNA | 88706964 | 88711749 | 88706964 | ID=MS.gene41661.t1;Parent=MS.gene41661 |
| chr3.4 | exon | 88706964 | 88707296 | 88706964 | ID=MS.gene41661.t1.exon1;Parent=MS.gene41661.t1 |
| chr3.4 | CDS | 88706964 | 88707296 | 88706964 | ID=cds.MS.gene41661.t1;Parent=MS.gene41661.t1 |
| chr3.4 | exon | 88709744 | 88709891 | 88709744 | ID=MS.gene41661.t1.exon2;Parent=MS.gene41661.t1 |
| chr3.4 | CDS | 88709744 | 88709891 | 88709744 | ID=cds.MS.gene41661.t1;Parent=MS.gene41661.t1 |
| chr3.4 | exon | 88710337 | 88710627 | 88710337 | ID=MS.gene41661.t1.exon3;Parent=MS.gene41661.t1 |
| chr3.4 | CDS | 88710337 | 88710627 | 88710337 | ID=cds.MS.gene41661.t1;Parent=MS.gene41661.t1 |
| chr3.4 | exon | 88711730 | 88711749 | 88711730 | ID=MS.gene41661.t1.exon4;Parent=MS.gene41661.t1 |
| chr3.4 | CDS | 88711730 | 88711749 | 88711730 | ID=cds.MS.gene41661.t1;Parent=MS.gene41661.t1 |
| Gene Sequence |
| Protein sequence |
