Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41668.t1 | XP_003602771.2 | 96.5 | 426 | 15 | 0 | 1 | 426 | 1 | 426 | 2.20E-239 | 837.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41668.t1 | Q9M306 | 52.7 | 444 | 187 | 6 | 5 | 426 | 13 | 455 | 2.4e-125 | 450.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41668.t1 | G7J3C1 | 96.5 | 426 | 15 | 0 | 1 | 426 | 1 | 426 | 1.6e-239 | 837.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052207 | MS.gene41668 | -0.802948 | 4.40E-49 | -1.69E-46 |
| MS.gene052287 | MS.gene41668 | -0.802681 | 5.00E-49 | -1.69E-46 |
| MS.gene055277 | MS.gene41668 | -0.823762 | 1.16E-53 | -1.69E-46 |
| MS.gene055303 | MS.gene41668 | -0.806082 | 9.77E-50 | -1.69E-46 |
| MS.gene055428 | MS.gene41668 | -0.800915 | 1.15E-48 | -1.69E-46 |
| MS.gene055520 | MS.gene41668 | 0.827789 | 1.29E-54 | -1.69E-46 |
| MS.gene059896 | MS.gene41668 | 0.805529 | 1.28E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41668.t1 | MTR_3g098840 | 96.479 | 426 | 15 | 0 | 1 | 426 | 1 | 426 | 0.0 | 862 |
| MS.gene41668.t1 | MTR_6g033315 | 54.801 | 427 | 174 | 3 | 4 | 413 | 5 | 429 | 1.74e-166 | 475 |
| MS.gene41668.t1 | MTR_7g083480 | 53.687 | 434 | 179 | 5 | 4 | 424 | 5 | 429 | 2.92e-151 | 436 |
| MS.gene41668.t1 | MTR_1g098390 | 48.635 | 403 | 177 | 7 | 21 | 397 | 5 | 403 | 9.67e-134 | 391 |
| MS.gene41668.t1 | MTR_6g038020 | 49.239 | 394 | 168 | 8 | 32 | 397 | 17 | 406 | 1.84e-124 | 367 |
| MS.gene41668.t1 | MTR_6g038020 | 49.239 | 394 | 168 | 8 | 32 | 397 | 14 | 403 | 2.10e-124 | 367 |
| MS.gene41668.t1 | MTR_7g088360 | 53.156 | 301 | 128 | 4 | 21 | 315 | 29 | 322 | 1.60e-109 | 328 |
| MS.gene41668.t1 | MTR_7g088350 | 51.438 | 313 | 138 | 4 | 11 | 315 | 15 | 321 | 1.12e-107 | 325 |
| MS.gene41668.t1 | MTR_5g023230 | 36.264 | 182 | 97 | 6 | 147 | 321 | 144 | 313 | 1.46e-21 | 95.1 |
| MS.gene41668.t1 | MTR_5g023230 | 36.264 | 182 | 97 | 6 | 147 | 321 | 164 | 333 | 2.29e-21 | 95.1 |
| MS.gene41668.t1 | MTR_4g023760 | 29.588 | 267 | 137 | 11 | 51 | 297 | 27 | 262 | 5.34e-21 | 93.2 |
| MS.gene41668.t1 | MTR_7g114080 | 29.947 | 187 | 111 | 3 | 151 | 318 | 160 | 345 | 7.00e-21 | 94.0 |
| MS.gene41668.t1 | MTR_4g116160 | 28.968 | 252 | 150 | 7 | 86 | 325 | 322 | 556 | 7.69e-21 | 95.5 |
| MS.gene41668.t1 | MTR_4g116160 | 28.968 | 252 | 150 | 7 | 86 | 325 | 149 | 383 | 9.19e-21 | 94.7 |
| MS.gene41668.t1 | MTR_7g114080 | 28.718 | 195 | 112 | 3 | 151 | 318 | 160 | 354 | 1.33e-19 | 90.5 |
| MS.gene41668.t1 | MTR_1g112830 | 30.568 | 229 | 122 | 7 | 87 | 307 | 416 | 615 | 1.80e-19 | 91.3 |
| MS.gene41668.t1 | MTR_1g094610 | 28.440 | 218 | 115 | 6 | 87 | 292 | 53 | 241 | 2.16e-18 | 85.1 |
| MS.gene41668.t1 | MTR_7g114080 | 33.803 | 142 | 74 | 2 | 151 | 272 | 160 | 301 | 2.02e-17 | 83.2 |
| MS.gene41668.t1 | MTR_4g092760 | 29.577 | 213 | 124 | 8 | 93 | 292 | 316 | 515 | 2.86e-17 | 84.3 |
| MS.gene41668.t1 | MTR_4g021795 | 27.650 | 217 | 110 | 6 | 103 | 301 | 76 | 263 | 3.63e-17 | 82.0 |
| MS.gene41668.t1 | MTR_4g116160 | 31.852 | 135 | 79 | 3 | 86 | 219 | 322 | 444 | 5.32e-17 | 83.2 |
| MS.gene41668.t1 | MTR_4g092760 | 32.903 | 155 | 89 | 5 | 151 | 292 | 274 | 426 | 8.27e-17 | 82.4 |
| MS.gene41668.t1 | MTR_7g114080 | 52.542 | 59 | 28 | 0 | 151 | 209 | 160 | 218 | 8.68e-15 | 75.5 |
| MS.gene41668.t1 | MTR_7g118050 | 29.245 | 212 | 110 | 10 | 103 | 297 | 83 | 271 | 3.60e-14 | 73.2 |
| MS.gene41668.t1 | MTR_5g023230 | 37.349 | 83 | 48 | 2 | 148 | 230 | 165 | 243 | 5.98e-13 | 68.9 |
| MS.gene41668.t1 | MTR_4g082560 | 32.824 | 131 | 78 | 3 | 152 | 272 | 180 | 310 | 1.27e-12 | 70.1 |
| MS.gene41668.t1 | MTR_7g118050 | 38.298 | 94 | 48 | 3 | 103 | 194 | 83 | 168 | 1.41e-12 | 67.0 |
| MS.gene41668.t1 | MTR_3g115950 | 28.788 | 132 | 82 | 3 | 152 | 272 | 75 | 205 | 4.43e-11 | 65.1 |
| MS.gene41668.t1 | MTR_3g115950 | 28.788 | 132 | 82 | 3 | 152 | 272 | 149 | 279 | 7.84e-11 | 64.3 |
| MS.gene41668.t1 | MTR_1g085980 | 26.866 | 134 | 86 | 4 | 150 | 272 | 155 | 287 | 8.95e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41668.t1 | AT3G48760 | 54.439 | 428 | 172 | 6 | 19 | 423 | 26 | 453 | 3.39e-164 | 470 |
| MS.gene41668.t1 | AT3G26935 | 53.623 | 414 | 168 | 5 | 4 | 397 | 5 | 414 | 4.46e-159 | 456 |
| MS.gene41668.t1 | AT5G41060 | 55.639 | 399 | 153 | 6 | 6 | 386 | 7 | 399 | 1.28e-154 | 444 |
| MS.gene41668.t1 | AT5G41060 | 56.684 | 374 | 141 | 5 | 31 | 386 | 14 | 384 | 1.67e-148 | 427 |
| MS.gene41668.t1 | AT4G24630 | 52.299 | 348 | 153 | 5 | 21 | 364 | 4 | 342 | 1.63e-131 | 385 |
| MS.gene41668.t1 | AT5G41060 | 56.418 | 335 | 125 | 5 | 70 | 386 | 1 | 332 | 1.34e-129 | 377 |
| MS.gene41668.t1 | AT5G41060 | 56.418 | 335 | 125 | 5 | 70 | 386 | 1 | 332 | 1.34e-129 | 377 |
| MS.gene41668.t1 | AT5G50020 | 56.711 | 298 | 127 | 2 | 21 | 316 | 4 | 301 | 2.60e-126 | 372 |
| MS.gene41668.t1 | AT5G50020 | 56.711 | 298 | 127 | 2 | 21 | 316 | 34 | 331 | 6.47e-126 | 372 |
| MS.gene41668.t1 | AT5G50020 | 54.698 | 298 | 126 | 3 | 21 | 316 | 4 | 294 | 2.99e-118 | 351 |
| MS.gene41668.t1 | AT3G56930 | 52.288 | 306 | 140 | 2 | 16 | 315 | 5 | 310 | 2.02e-111 | 336 |
| MS.gene41668.t1 | AT5G05070 | 52.805 | 303 | 129 | 5 | 20 | 315 | 36 | 331 | 1.75e-108 | 326 |
| MS.gene41668.t1 | AT2G40990 | 39.474 | 418 | 218 | 9 | 5 | 411 | 12 | 405 | 1.74e-95 | 293 |
| MS.gene41668.t1 | AT3G56920 | 43.824 | 340 | 172 | 4 | 21 | 357 | 10 | 333 | 1.29e-92 | 283 |
| MS.gene41668.t1 | AT3G56930 | 47.195 | 303 | 118 | 3 | 19 | 315 | 8 | 274 | 1.14e-89 | 279 |
| MS.gene41668.t1 | AT3G51390 | 31.048 | 248 | 123 | 6 | 86 | 300 | 73 | 305 | 1.70e-20 | 92.4 |
| MS.gene41668.t1 | AT3G51390 | 33.684 | 190 | 111 | 4 | 118 | 300 | 129 | 310 | 7.72e-20 | 90.5 |
| MS.gene41668.t1 | AT3G60800 | 28.358 | 268 | 147 | 8 | 51 | 297 | 27 | 270 | 7.78e-19 | 87.0 |
| MS.gene41668.t1 | AT3G04970 | 31.973 | 147 | 80 | 2 | 151 | 277 | 73 | 219 | 2.59e-18 | 85.5 |
| MS.gene41668.t1 | AT2G14255 | 31.818 | 154 | 92 | 4 | 151 | 292 | 363 | 515 | 6.27e-18 | 86.3 |
| MS.gene41668.t1 | AT4G22750 | 28.346 | 254 | 133 | 10 | 83 | 313 | 54 | 281 | 1.21e-17 | 83.6 |
| MS.gene41668.t1 | AT4G00840 | 30.634 | 284 | 141 | 14 | 37 | 297 | 5 | 255 | 1.24e-17 | 83.2 |
| MS.gene41668.t1 | AT5G04270 | 29.651 | 172 | 95 | 3 | 103 | 274 | 66 | 211 | 1.69e-17 | 82.4 |
| MS.gene41668.t1 | AT3G04970 | 31.973 | 147 | 80 | 2 | 151 | 277 | 160 | 306 | 2.28e-17 | 84.0 |
| MS.gene41668.t1 | AT3G09320 | 30.275 | 218 | 105 | 7 | 102 | 301 | 66 | 254 | 2.24e-16 | 79.7 |
| MS.gene41668.t1 | AT5G20350 | 25.581 | 258 | 164 | 8 | 84 | 330 | 315 | 555 | 1.05e-15 | 79.7 |
| MS.gene41668.t1 | AT4G00840 | 33.735 | 166 | 86 | 7 | 37 | 194 | 5 | 154 | 2.63e-15 | 75.1 |
| MS.gene41668.t1 | AT3G04970 | 31.690 | 142 | 77 | 2 | 151 | 272 | 160 | 301 | 6.19e-15 | 75.9 |
| MS.gene41668.t1 | AT1G69420 | 31.298 | 131 | 80 | 2 | 152 | 272 | 164 | 294 | 6.05e-14 | 74.3 |
| MS.gene41668.t1 | AT1G69420 | 31.298 | 131 | 80 | 2 | 152 | 272 | 164 | 294 | 6.05e-14 | 74.3 |
| MS.gene41668.t1 | AT4G01730 | 27.820 | 133 | 86 | 2 | 150 | 272 | 157 | 289 | 6.20e-12 | 67.8 |
| MS.gene41668.t1 | AT3G22180 | 31.061 | 132 | 79 | 5 | 152 | 272 | 173 | 303 | 9.54e-12 | 67.4 |
Find 99 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATTCTGTTGGTTCTTT+TGG | 0.104120 | 3.4:+88755675 | None:intergenic |
| TCACTTCCATCATAATTATC+TGG | 0.213227 | 3.4:+88757029 | None:intergenic |
| TCAATTAGCCCTTTGTTATA+AGG | 0.231915 | 3.4:+88755762 | None:intergenic |
| CTTGGAGGGAGGTTTATATT+TGG | 0.257102 | 3.4:-88758563 | MS.gene41668:CDS |
| GGGAACAAAGCAGCAGAAAA+TGG | 0.266208 | 3.4:-88755464 | MS.gene41668:CDS |
| CGAAGGATCAACGGTATTTC+CGG | 0.276497 | 3.4:+88758706 | None:intergenic |
| GACAAGTTGCTTCCTTTCTA+AGG | 0.282513 | 3.4:-88755497 | MS.gene41668:CDS |
| CAATTAGCCCTTTGTTATAA+GGG | 0.322127 | 3.4:+88755763 | None:intergenic |
| TTCATTGCTGTCTGGTTTGT+TGG | 0.334463 | 3.4:-88756008 | MS.gene41668:CDS |
| GATTATAAAGACGAGGAATA+TGG | 0.354047 | 3.4:-88755588 | MS.gene41668:CDS |
| TCCATTGACAATTACTTCCT+TGG | 0.361235 | 3.4:+88756962 | None:intergenic |
| AAAGCACAGAAAACAGCAAC+AGG | 0.373823 | 3.4:+88758494 | None:intergenic |
| CTTTCTAAGGCAGTCCTTGT+GGG | 0.391361 | 3.4:-88755484 | MS.gene41668:CDS |
| TGTTATAAGGGTTGACTTGT+CGG | 0.392823 | 3.4:+88755775 | None:intergenic |
| AGTGATACATCTGAGGATTT+AGG | 0.394520 | 3.4:-88755549 | MS.gene41668:CDS |
| CATTGTAAACTGGCATCATA+AGG | 0.394852 | 3.4:+88755631 | None:intergenic |
| ATTGAATATCCAGAGTGATT+AGG | 0.410341 | 3.4:+88758443 | None:intergenic |
| AGCAAAAGGCATGAACATAA+AGG | 0.422939 | 3.4:+88756126 | None:intergenic |
| TCATCAGCCTCATTGTAAAC+TGG | 0.432467 | 3.4:+88755621 | None:intergenic |
| GTAAATATAGATTTCACATC+AGG | 0.435683 | 3.4:+88758539 | None:intergenic |
| ATTATTAGTGCAATGGAAGC+AGG | 0.437732 | 3.4:+88756038 | None:intergenic |
| CCATGGGTTGGTCAGTGTAT+TGG | 0.450019 | 3.4:-88756831 | MS.gene41668:CDS |
| TTGTGCTGATTAGATATGTA+TGG | 0.451420 | 3.4:+88755970 | None:intergenic |
| GGAACAAAGCAGCAGAAAAT+GGG | 0.455188 | 3.4:-88755463 | MS.gene41668:CDS |
| CATGAACATAAAGGCAAAGC+AGG | 0.455937 | 3.4:+88756135 | None:intergenic |
| TATACACATTCATTGCTGTC+TGG | 0.456264 | 3.4:-88756016 | MS.gene41668:CDS |
| ATTGCTGTCTGGTTTGTTGG+AGG | 0.458351 | 3.4:-88756005 | MS.gene41668:CDS |
| GCTACTGAGTTCGCCGGCGC+CGG | 0.464541 | 3.4:+88758728 | None:intergenic |
| GCAGTATGCTTCACACAGAA+AGG | 0.468722 | 3.4:-88755527 | MS.gene41668:CDS |
| AAACAAACATGTAGTAGAAC+CGG | 0.470642 | 3.4:+88756168 | None:intergenic |
| TACTGAGCAATGAGAGCAGC+GGG | 0.473275 | 3.4:+88756890 | None:intergenic |
| CTGACCTCAGGAAGAGATCC+TGG | 0.475106 | 3.4:-88757083 | MS.gene41668:CDS |
| CACTTCCATCATAATTATCT+GGG | 0.480034 | 3.4:+88757030 | None:intergenic |
| CACGGCGACAGCGCAATTAC+CGG | 0.481466 | 3.4:-88756187 | MS.gene41668:intron |
| CAGTATGCTTCACACAGAAA+GGG | 0.481949 | 3.4:-88755526 | MS.gene41668:CDS |
| CTTTGTCTAGATGATTCTGT+TGG | 0.483481 | 3.4:+88755666 | None:intergenic |
| CCTTTCTAAGGCAGTCCTTG+TGG | 0.491773 | 3.4:-88755485 | MS.gene41668:CDS |
| GGTTGACTTGTCGGTCATAC+CGG | 0.492971 | 3.4:+88755784 | None:intergenic |
| TCCAAGGAAGTAATTGTCAA+TGG | 0.493913 | 3.4:-88756963 | MS.gene41668:CDS |
| CCACTCCCAGATAATTATGA+TGG | 0.500454 | 3.4:-88757035 | MS.gene41668:CDS |
| GAATTGCGAGGCACTATGCC+AGG | 0.501439 | 3.4:+88757065 | None:intergenic |
| AGCACAGAAAACAGCAACAG+GGG | 0.504125 | 3.4:+88758496 | None:intergenic |
| ACAAATGCATCCTCCGGCGC+CGG | 0.518692 | 3.4:-88758741 | None:intergenic |
| ACTCAGAGGAGATATCGATC+TGG | 0.527358 | 3.4:-88756079 | MS.gene41668:CDS |
| TTTGCTGGGTTTACATCATG+AGG | 0.527634 | 3.4:-88756109 | MS.gene41668:CDS |
| AAGCGGATCACCAGTGATAG+TGG | 0.528062 | 3.4:-88755393 | MS.gene41668:CDS |
| ATTTCCTTTCCAAGCGCGAT+AGG | 0.533436 | 3.4:+88758673 | None:intergenic |
| CATGATGTAAACCCAGCAAA+AGG | 0.534339 | 3.4:+88756112 | None:intergenic |
| CCACAAGGACTGCCTTAGAA+AGG | 0.535328 | 3.4:+88755485 | None:intergenic |
| TTATTAGTGCAATGGAAGCA+GGG | 0.535975 | 3.4:+88756039 | None:intergenic |
| GATTTGATCATCACTGCCCA+TGG | 0.538217 | 3.4:-88756848 | MS.gene41668:CDS |
| TCATCAGAACCTATCGCGCT+TGG | 0.540838 | 3.4:-88758682 | MS.gene41668:CDS |
| AAGTCAACCCTTATAACAAA+GGG | 0.541030 | 3.4:-88755770 | MS.gene41668:CDS |
| ATTGTAAACTGGCATCATAA+GGG | 0.543614 | 3.4:+88755632 | None:intergenic |
| AAGCACAGAAAACAGCAACA+GGG | 0.545403 | 3.4:+88758495 | None:intergenic |
| TCAAACACAAATGCATCCTC+CGG | 0.547234 | 3.4:-88758747 | None:intergenic |
| TTTCCGGCTACTGAGTTCGC+CGG | 0.553399 | 3.4:+88758722 | None:intergenic |
| AGAACCTATCGCGCTTGGAA+AGG | 0.560307 | 3.4:-88758677 | MS.gene41668:CDS |
| GATCATCACTGCCCATGGGT+TGG | 0.560369 | 3.4:-88756843 | MS.gene41668:CDS |
| ACTGAGTTCGCCGGCGCCGG+AGG | 0.561048 | 3.4:+88758731 | None:intergenic |
| ATTGCTCTTATACTGACCTC+AGG | 0.563603 | 3.4:-88757095 | MS.gene41668:CDS |
| CCATCATAATTATCTGGGAG+TGG | 0.563784 | 3.4:+88757035 | None:intergenic |
| AGGTTCATTACCACTATCAC+TGG | 0.565407 | 3.4:+88755383 | None:intergenic |
| ACCACATTTACCACGATCCA+AGG | 0.572679 | 3.4:-88756979 | MS.gene41668:CDS |
| ACAATTACTTCCTTGGATCG+TGG | 0.582722 | 3.4:+88756969 | None:intergenic |
| TCTGCTGCTTTGTTCCCACA+AGG | 0.583203 | 3.4:+88755470 | None:intergenic |
| CCAATACACTGACCAACCCA+TGG | 0.583973 | 3.4:+88756831 | None:intergenic |
| GCGCCGGCGAACTCAGTAGC+CGG | 0.585327 | 3.4:-88758725 | MS.gene41668:CDS |
| TGTGTATATTATTAGTGCAA+TGG | 0.589926 | 3.4:+88756031 | None:intergenic |
| TTACAATGAGGCTGATGAGG+TGG | 0.589928 | 3.4:-88755616 | MS.gene41668:CDS |
| ACAGAATCATCTAGACAAAG+AGG | 0.591209 | 3.4:-88755663 | MS.gene41668:CDS |
| CAAGTCAACCCTTATAACAA+AGG | 0.591481 | 3.4:-88755771 | MS.gene41668:CDS |
| GATCGTGGTAAATGTGGTGG+TGG | 0.591714 | 3.4:+88756984 | None:intergenic |
| ATTTGATCATCACTGCCCAT+GGG | 0.600506 | 3.4:-88756847 | MS.gene41668:CDS |
| TCTGATGAGCGAAGGATCAA+CGG | 0.601917 | 3.4:+88758697 | None:intergenic |
| AGTATGCTTCACACAGAAAG+GGG | 0.616574 | 3.4:-88755525 | MS.gene41668:CDS |
| TATTAGTGCAATGGAAGCAG+GGG | 0.618463 | 3.4:+88756040 | None:intergenic |
| CGATAGGTTCTGATGAGCGA+AGG | 0.621597 | 3.4:+88758689 | None:intergenic |
| TCCTTGGATCGTGGTAAATG+TGG | 0.622600 | 3.4:+88756978 | None:intergenic |
| GGTTGGTCAGTGTATTGGAC+TGG | 0.624376 | 3.4:-88756826 | MS.gene41668:intron |
| TGATTTAAGTGATACATCTG+AGG | 0.629280 | 3.4:-88755556 | MS.gene41668:CDS |
| TCATAATTATCTGGGAGTGG+AGG | 0.634751 | 3.4:+88757038 | None:intergenic |
| AGTTTACAATGAGGCTGATG+AGG | 0.639849 | 3.4:-88755619 | MS.gene41668:CDS |
| TATGATGCCAGTTTACAATG+AGG | 0.640744 | 3.4:-88755628 | MS.gene41668:CDS |
| ATATCTAATCAGCACAAACC+AGG | 0.643061 | 3.4:-88755964 | MS.gene41668:intron |
| AGCTTCTGATGTTCTTGACG+AGG | 0.657463 | 3.4:-88755436 | MS.gene41668:CDS |
| ATGAACATAAAGGCAAAGCA+GGG | 0.663108 | 3.4:+88756136 | None:intergenic |
| TTGGATCGTGGTAAATGTGG+TGG | 0.667113 | 3.4:+88756981 | None:intergenic |
| CAATACACTGACCAACCCAT+GGG | 0.670201 | 3.4:+88756832 | None:intergenic |
| ATACTGAGCAATGAGAGCAG+CGG | 0.679203 | 3.4:+88756889 | None:intergenic |
| AGTGATAGTGGTAATGAACC+TGG | 0.679603 | 3.4:-88755381 | MS.gene41668:CDS |
| TATGCCAGGATCTCTTCCTG+AGG | 0.701986 | 3.4:+88757079 | None:intergenic |
| AGTGGAGGATAAGAATTGCG+AGG | 0.702045 | 3.4:+88757053 | None:intergenic |
| CATGAGGATCAAGAACTCAG+AGG | 0.703307 | 3.4:-88756093 | MS.gene41668:CDS |
| GAGCAATGAGAGCAGCGGGG+AGG | 0.704186 | 3.4:+88756894 | None:intergenic |
| CTCAGTATGTGATAACTGTG+TGG | 0.713980 | 3.4:-88756874 | MS.gene41668:CDS |
| ACGAAGACGACGAATCAAAG+CGG | 0.721141 | 3.4:-88755410 | MS.gene41668:CDS |
| ACTGAGCAATGAGAGCAGCG+GGG | 0.779041 | 3.4:+88756891 | None:intergenic |
| GATAGTGGTAATGAACCTGG+TGG | 0.817967 | 3.4:-88755378 | MS.gene41668:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTCCATTTCTAATT+AGG | + | chr3.4:88757687-88757706 | None:intergenic | 15.0% |
| !!! | CTTCAAAAATTTTATACAAT+CGG | - | chr3.4:88755973-88755992 | MS.gene41668:CDS | 15.0% |
| !!! | TTGTATAAAATTTTTGAAGT+AGG | + | chr3.4:88755972-88755991 | None:intergenic | 15.0% |
| !!! | TTTGTAATGAAATATTTTCT+TGG | - | chr3.4:88756731-88756750 | MS.gene41668:intron | 15.0% |
| !! | AAACTATAAGAGAAACTATT+TGG | - | chr3.4:88756448-88756467 | MS.gene41668:intron | 20.0% |
| !! | AAACTTCTTCTATTCTAAAT+AGG | + | chr3.4:88756053-88756072 | None:intergenic | 20.0% |
| !! | AACAGAAAAGCTTAATTATT+AGG | + | chr3.4:88755456-88755475 | None:intergenic | 20.0% |
| !! | AGATTTAGATATTAATGAGT+TGG | - | chr3.4:88756473-88756492 | MS.gene41668:intron | 20.0% |
| !! | ATTAAAATGATAGCACAAAT+TGG | + | chr3.4:88757330-88757349 | None:intergenic | 20.0% |
| !! | CTAGATATAAATAAGATTTC+TGG | - | chr3.4:88756144-88756163 | MS.gene41668:CDS | 20.0% |
| !! | TGAATAAAAATGACTTACAA+AGG | + | chr3.4:88755699-88755718 | None:intergenic | 20.0% |
| !!! | AATGCTACTTTTTATTTTTC+AGG | - | chr3.4:88755496-88755515 | MS.gene41668:CDS | 20.0% |
| !!! | CATATGAAAATTTTAGATAC+CGG | - | chr3.4:88758287-88758306 | MS.gene41668:intron | 20.0% |
| !!! | TGTATAGCTAGATATTATTT+TGG | - | chr3.4:88756106-88756125 | MS.gene41668:CDS | 20.0% |
| !!! | TTTTTTTTACCTGATTACTA+TGG | + | chr3.4:88756650-88756669 | None:intergenic | 20.0% |
| ! | AATAGAAGAAGTTTAGCATT+TGG | - | chr3.4:88756059-88756078 | MS.gene41668:CDS | 25.0% |
| ! | ACAAAAGGAACAATCATTAA+CGG | + | chr3.4:88758252-88758271 | None:intergenic | 25.0% |
| ! | ATAGTAAGTAGTCTCATTTA+AGG | + | chr3.4:88758183-88758202 | None:intergenic | 25.0% |
| ! | ATGAGTTAAGAATAACTAAC+AGG | + | chr3.4:88755929-88755948 | None:intergenic | 25.0% |
| ! | ATTTACCTCCTAATTAGAAA+TGG | - | chr3.4:88757676-88757695 | MS.gene41668:intron | 25.0% |
| ! | CTATATAGTAGAAAAGATAG+TGG | - | chr3.4:88756311-88756330 | MS.gene41668:intron | 25.0% |
| ! | GTAAATATAGATTTCACATC+AGG | + | chr3.4:88755554-88755573 | None:intergenic | 25.0% |
| ! | TATATCTAGCTAAGTATACT+TGG | + | chr3.4:88756133-88756152 | None:intergenic | 25.0% |
| ! | TGTGTATATTATTAGTGCAA+TGG | + | chr3.4:88758062-88758081 | None:intergenic | 25.0% |
| ! | TTAGCATTTGGACAAATTTA+TGG | - | chr3.4:88756071-88756090 | MS.gene41668:CDS | 25.0% |
| ! | TTATTCCATTTCTAATTAGG+AGG | + | chr3.4:88757684-88757703 | None:intergenic | 25.0% |
| ! | TTCATAACTTGAATCCATTA+GGG | - | chr3.4:88755867-88755886 | MS.gene41668:intron | 25.0% |
| !! | CACTATCTTTTCTACTATAT+AGG | + | chr3.4:88756313-88756332 | None:intergenic | 25.0% |
| !! | GTTTCTCTTATAGTTTTCAT+AGG | + | chr3.4:88756444-88756463 | None:intergenic | 25.0% |
| !! | TATTGTTGTTGTAAACTCTA+TGG | - | chr3.4:88756555-88756574 | MS.gene41668:intron | 25.0% |
| !! | TGAAATATTTTCTTGGTGAA+TGG | - | chr3.4:88756738-88756757 | MS.gene41668:intron | 25.0% |
| !! | TTGTTTCTTTGCATGTATAT+TGG | - | chr3.4:88757725-88757744 | MS.gene41668:intron | 25.0% |
| !!! | ATTTTTCAGGTGTTTTTTCT+TGG | - | chr3.4:88755509-88755528 | MS.gene41668:CDS | 25.0% |
| !!! | CTGAAATTGTTTTTGGATAT+GGG | + | chr3.4:88758385-88758404 | None:intergenic | 25.0% |
| !!! | TAGAAAAGATAGTGGAAAAT+AGG | - | chr3.4:88756319-88756338 | MS.gene41668:intron | 25.0% |
| AAACAAACATGTAGTAGAAC+CGG | + | chr3.4:88757925-88757944 | None:intergenic | 30.0% | |
| AAGTCAACCCTTATAACAAA+GGG | - | chr3.4:88758320-88758339 | MS.gene41668:intron | 30.0% | |
| AATTGACAGCTTAGTCAATA+AGG | + | chr3.4:88757636-88757655 | None:intergenic | 30.0% | |
| AGTTAGATTACAAGAGATAG+AGG | - | chr3.4:88756414-88756433 | MS.gene41668:intron | 30.0% | |
| AGTTATTCTTAACTCATCGT+GGG | - | chr3.4:88755932-88755951 | MS.gene41668:intron | 30.0% | |
| ATTGAATATCCAGAGTGATT+AGG | + | chr3.4:88755650-88755669 | None:intergenic | 30.0% | |
| ATTGACAGCTTAGTCAATAA+GGG | + | chr3.4:88757635-88757654 | None:intergenic | 30.0% | |
| ATTGTAAACTGGCATCATAA+GGG | + | chr3.4:88758461-88758480 | None:intergenic | 30.0% | |
| CACTTCCATCATAATTATCT+GGG | + | chr3.4:88757063-88757082 | None:intergenic | 30.0% | |
| CCATATCCAAAAACAATTTC+AGG | - | chr3.4:88758383-88758402 | MS.gene41668:intron | 30.0% | |
| CTCTTTGCTTTATATGTACA+CGG | - | chr3.4:88757885-88757904 | MS.gene41668:intron | 30.0% | |
| CTTCATAACTTGAATCCATT+AGG | - | chr3.4:88755866-88755885 | MS.gene41668:intron | 30.0% | |
| GATTATAAAGACGAGGAATA+TGG | - | chr3.4:88758502-88758521 | MS.gene41668:CDS | 30.0% | |
| GGAAAAAGATTATAAAGACG+AGG | - | chr3.4:88758495-88758514 | MS.gene41668:CDS | 30.0% | |
| GTAAGAAAAACGAACTAGAA+AGG | + | chr3.4:88758227-88758246 | None:intergenic | 30.0% | |
| GTCAATTTACTGTGATCAAA+TGG | - | chr3.4:88757649-88757668 | MS.gene41668:intron | 30.0% | |
| TACGCATCATAAACCATATT+TGG | + | chr3.4:88756501-88756520 | None:intergenic | 30.0% | |
| TAGTTATTCTTAACTCATCG+TGG | - | chr3.4:88755931-88755950 | MS.gene41668:intron | 30.0% | |
| TATTATTGTTGTCGATGTGT+CGG | - | chr3.4:88755824-88755843 | MS.gene41668:intron | 30.0% | |
| TCACTTCCATCATAATTATC+TGG | + | chr3.4:88757064-88757083 | None:intergenic | 30.0% | |
| TCCACTAAAATTGTTTGTTC+AGG | + | chr3.4:88757418-88757437 | None:intergenic | 30.0% | |
| TGATAACTGATAAGACTAGA+CGG | - | chr3.4:88756234-88756253 | MS.gene41668:intron | 30.0% | |
| TGATTTAAGTGATACATCTG+AGG | - | chr3.4:88758534-88758553 | MS.gene41668:CDS | 30.0% | |
| ! | AACATTGACTAAGTTGTCAA+AGG | - | chr3.4:88757437-88757456 | MS.gene41668:intron | 30.0% |
| ! | ACATTGACTAAGTTGTCAAA+GGG | - | chr3.4:88757438-88757457 | MS.gene41668:intron | 30.0% |
| ! | AGCTATATCCAACTTTTAGA+GGG | - | chr3.4:88756798-88756817 | MS.gene41668:intron | 30.0% |
| ! | ATACAATCGGTTAGTTGAAA+AGG | - | chr3.4:88755986-88756005 | MS.gene41668:CDS | 30.0% |
| ! | CAATTAGCCCTTTGTTATAA+GGG | + | chr3.4:88758330-88758349 | None:intergenic | 30.0% |
| ! | CATAATTACCCTCTAAAAGT+TGG | + | chr3.4:88756809-88756828 | None:intergenic | 30.0% |
| ! | TAACGTGTTTAGGATTAAAG+TGG | + | chr3.4:88756956-88756975 | None:intergenic | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr3.4:88756485-88756504 | MS.gene41668:intron | 30.0% |
| ! | TAGCTATATCCAACTTTTAG+AGG | - | chr3.4:88756797-88756816 | MS.gene41668:intron | 30.0% |
| ! | TCAATTAGCCCTTTGTTATA+AGG | + | chr3.4:88758331-88758350 | None:intergenic | 30.0% |
| ! | TCCTGAACAAACAATTTTAG+TGG | - | chr3.4:88757414-88757433 | MS.gene41668:intron | 30.0% |
| !! | TTGTGCTGATTAGATATGTA+TGG | + | chr3.4:88758123-88758142 | None:intergenic | 30.0% |
| !!! | ATTGTTTTTGGATATGGGAA+TGG | + | chr3.4:88758380-88758399 | None:intergenic | 30.0% |
| !!! | CCTGAAATTGTTTTTGGATA+TGG | + | chr3.4:88758386-88758405 | None:intergenic | 30.0% |
| AAAATAGGCTTAGGTGGTTT+GGG | - | chr3.4:88756334-88756353 | MS.gene41668:intron | 35.0% | |
| AAAATGAAGCGAAATGTGTC+AGG | - | chr3.4:88756618-88756637 | MS.gene41668:intron | 35.0% | |
| ACAGAATCATCTAGACAAAG+AGG | - | chr3.4:88758427-88758446 | MS.gene41668:CDS | 35.0% | |
| AGTAAGAAGAGTAGATCAGA+TGG | - | chr3.4:88756386-88756405 | MS.gene41668:intron | 35.0% | |
| AGTGATACATCTGAGGATTT+AGG | - | chr3.4:88758541-88758560 | MS.gene41668:CDS | 35.0% | |
| AGTTAAGTAGTGTTCAAACC+TGG | + | chr3.4:88758147-88758166 | None:intergenic | 35.0% | |
| AGTTGAGATAACTTCTTGCA+TGG | + | chr3.4:88756698-88756717 | None:intergenic | 35.0% | |
| ATAATTCAATGTGTCAGCGT+CGG | + | chr3.4:88755788-88755807 | None:intergenic | 35.0% | |
| ATATCTAATCAGCACAAACC+AGG | - | chr3.4:88758126-88758145 | MS.gene41668:intron | 35.0% | |
| ATGAACATAAAGGCAAAGCA+GGG | + | chr3.4:88757957-88757976 | None:intergenic | 35.0% | |
| ATTATTAGTGCAATGGAAGC+AGG | + | chr3.4:88758055-88758074 | None:intergenic | 35.0% | |
| CAAGTCAACCCTTATAACAA+AGG | - | chr3.4:88758319-88758338 | MS.gene41668:intron | 35.0% | |
| CATTGTAAACTGGCATCATA+AGG | + | chr3.4:88758462-88758481 | None:intergenic | 35.0% | |
| CGTGTACATATAAAGCAAAG+AGG | + | chr3.4:88757887-88757906 | None:intergenic | 35.0% | |
| CTTTGTCTAGATGATTCTGT+TGG | + | chr3.4:88758427-88758446 | None:intergenic | 35.0% | |
| GATAACTGATAAGACTAGAC+GGG | - | chr3.4:88756235-88756254 | MS.gene41668:intron | 35.0% | |
| GCAATACATGTAACGTGTTT+AGG | + | chr3.4:88756966-88756985 | None:intergenic | 35.0% | |
| GGACTACTTGTGTTAAGAAA+TGG | - | chr3.4:88756576-88756595 | MS.gene41668:intron | 35.0% | |
| GTTAAGAATAACTAACAGGC+AGG | + | chr3.4:88755925-88755944 | None:intergenic | 35.0% | |
| GTTGTTGTCATGTGATTGAA+AGG | - | chr3.4:88757482-88757501 | MS.gene41668:intron | 35.0% | |
| TAGACTGCACATAGAACAAA+AGG | + | chr3.4:88758267-88758286 | None:intergenic | 35.0% | |
| TATACACATTCATTGCTGTC+TGG | - | chr3.4:88758074-88758093 | MS.gene41668:intron | 35.0% | |
| TATGATGCCAGTTTACAATG+AGG | - | chr3.4:88758462-88758481 | MS.gene41668:CDS | 35.0% | |
| TCCAAGGAAGTAATTGTCAA+TGG | - | chr3.4:88757127-88757146 | MS.gene41668:intron | 35.0% | |
| TCCATTGACAATTACTTCCT+TGG | + | chr3.4:88757131-88757150 | None:intergenic | 35.0% | |
| TGTGTTAAGAAATGGAGCTA+GGG | - | chr3.4:88756584-88756603 | MS.gene41668:intron | 35.0% | |
| TTATTAGTGCAATGGAAGCA+GGG | + | chr3.4:88758054-88758073 | None:intergenic | 35.0% | |
| TTGTGTTAAGAAATGGAGCT+AGG | - | chr3.4:88756583-88756602 | MS.gene41668:intron | 35.0% | |
| ! | AGATTTCTGGATATTGCTTG+TGG | - | chr3.4:88756157-88756176 | MS.gene41668:CDS | 35.0% |
| ! | AGCAAAAGGCATGAACATAA+AGG | + | chr3.4:88757967-88757986 | None:intergenic | 35.0% |
| ! | AGTAGTCTCATTTAAGGTCA+AGG | + | chr3.4:88758177-88758196 | None:intergenic | 35.0% |
| ! | ATTAGGGTAGTGCTTTAAGT+AGG | - | chr3.4:88755883-88755902 | MS.gene41668:intron | 35.0% |
| ! | CAAAAACAATTTCAGGTCCA+AGG | - | chr3.4:88758390-88758409 | MS.gene41668:intron | 35.0% |
| ! | CATTGACTAAGTTGTCAAAG+GGG | - | chr3.4:88757439-88757458 | MS.gene41668:intron | 35.0% |
| ! | CTTGGACCTGAAATTGTTTT+TGG | + | chr3.4:88758392-88758411 | None:intergenic | 35.0% |
| ! | GATGATTTTCCTAATCACTC+TGG | - | chr3.4:88755638-88755657 | MS.gene41668:CDS | 35.0% |
| ! | GTAGTCTCATTTAAGGTCAA+GGG | + | chr3.4:88758176-88758195 | None:intergenic | 35.0% |
| ! | TACTTAAAGCACTACCCTAA+TGG | + | chr3.4:88755884-88755903 | None:intergenic | 35.0% |
| ! | TGGATTCAAGTTATGAAGCA+CGG | + | chr3.4:88755864-88755883 | None:intergenic | 35.0% |
| ! | TTATGTTCATGCCTTTTGCT+GGG | - | chr3.4:88757967-88757986 | MS.gene41668:intron | 35.0% |
| ! | TTTATGTTCATGCCTTTTGC+TGG | - | chr3.4:88757966-88757985 | MS.gene41668:intron | 35.0% |
| !! | AGATAGTGGAAAATAGGCTT+AGG | - | chr3.4:88756325-88756344 | MS.gene41668:intron | 35.0% |
| !! | AGGTTTTGACCATAGTAATC+AGG | - | chr3.4:88756638-88756657 | MS.gene41668:intron | 35.0% |
| !! | TGTTATAAGGGTTGACTTGT+CGG | + | chr3.4:88758318-88758337 | None:intergenic | 35.0% |
| !!! | CTTACCCTGTTTTTTTACAC+AGG | + | chr3.4:88757536-88757555 | None:intergenic | 35.0% |
| !!! | GATGATTCTGTTGGTTCTTT+TGG | + | chr3.4:88758418-88758437 | None:intergenic | 35.0% |
| !!! | TTCAGGTGTTTTTTCTTGGA+GGG | - | chr3.4:88755513-88755532 | MS.gene41668:CDS | 35.0% |
| !!! | TTTCAGGTGTTTTTTCTTGG+AGG | - | chr3.4:88755512-88755531 | MS.gene41668:CDS | 35.0% |
| AAAGCACAGAAAACAGCAAC+AGG | + | chr3.4:88755599-88755618 | None:intergenic | 40.0% | |
| AACAACAATATCCCACCAAG+TGG | + | chr3.4:88756545-88756564 | None:intergenic | 40.0% | |
| AACACGTTACATGTATTGCC+AGG | - | chr3.4:88756967-88756986 | MS.gene41668:CDS | 40.0% | |
| AAGAAGAGTAGATCAGATGG+AGG | - | chr3.4:88756389-88756408 | MS.gene41668:intron | 40.0% | |
| AAGCACAGAAAACAGCAACA+GGG | + | chr3.4:88755598-88755617 | None:intergenic | 40.0% | |
| ACAACAATATCCCACCAAGT+GGG | + | chr3.4:88756544-88756563 | None:intergenic | 40.0% | |
| ACAATTACTTCCTTGGATCG+TGG | + | chr3.4:88757124-88757143 | None:intergenic | 40.0% | |
| AGCCTCCTGTGTAAAAAAAC+AGG | - | chr3.4:88757528-88757547 | MS.gene41668:intron | 40.0% | |
| AGGTTCATTACCACTATCAC+TGG | + | chr3.4:88758710-88758729 | None:intergenic | 40.0% | |
| AGTATGCTTCACACAGAAAG+GGG | - | chr3.4:88758565-88758584 | MS.gene41668:CDS | 40.0% | |
| AGTTTACAATGAGGCTGATG+AGG | - | chr3.4:88758471-88758490 | MS.gene41668:CDS | 40.0% | |
| ATAACTAACAGGCAGGTCAT+AGG | + | chr3.4:88755918-88755937 | None:intergenic | 40.0% | |
| ATTGCTCTTATACTGACCTC+AGG | - | chr3.4:88756995-88757014 | MS.gene41668:CDS | 40.0% | |
| ATTTGATCATCACTGCCCAT+GGG | - | chr3.4:88757243-88757262 | MS.gene41668:intron | 40.0% | |
| CAGTATGCTTCACACAGAAA+GGG | - | chr3.4:88758564-88758583 | MS.gene41668:CDS | 40.0% | |
| CATGAACATAAAGGCAAAGC+AGG | + | chr3.4:88757958-88757977 | None:intergenic | 40.0% | |
| CATGATGTAAACCCAGCAAA+AGG | + | chr3.4:88757981-88758000 | None:intergenic | 40.0% | |
| CCACTCCCAGATAATTATGA+TGG | - | chr3.4:88757055-88757074 | MS.gene41668:CDS | 40.0% | |
| CCATCATAATTATCTGGGAG+TGG | + | chr3.4:88757058-88757077 | None:intergenic | 40.0% | |
| CGTAATTTGATCCATGTAGC+CGG | - | chr3.4:88756517-88756536 | MS.gene41668:intron | 40.0% | |
| CTCAGTATGTGATAACTGTG+TGG | - | chr3.4:88757216-88757235 | MS.gene41668:intron | 40.0% | |
| CTGCGTACAATACACCAAAA+TGG | - | chr3.4:88757557-88757576 | MS.gene41668:intron | 40.0% | |
| CTTGGAGGGAGGTTTATATT+TGG | - | chr3.4:88755527-88755546 | MS.gene41668:CDS | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr3.4:88756333-88756352 | MS.gene41668:intron | 40.0% | |
| GACAAGTTGCTTCCTTTCTA+AGG | - | chr3.4:88758593-88758612 | MS.gene41668:intron | 40.0% | |
| GACCAATGAGTGTGATGTTT+GGG | + | chr3.4:88757767-88757786 | None:intergenic | 40.0% | |
| GCCTCCTGTGTAAAAAAACA+GGG | - | chr3.4:88757529-88757548 | MS.gene41668:intron | 40.0% | |
| GGAACAAAGCAGCAGAAAAT+GGG | - | chr3.4:88758627-88758646 | MS.gene41668:intron | 40.0% | |
| GTATAAGAGCAATCAGAACC+TGG | + | chr3.4:88756988-88757007 | None:intergenic | 40.0% | |
| TAGTGGAAAATAGGCTTAGG+TGG | - | chr3.4:88756328-88756347 | MS.gene41668:intron | 40.0% | |
| TATTAGTGCAATGGAAGCAG+GGG | + | chr3.4:88758053-88758072 | None:intergenic | 40.0% | |
| TCATAATTATCTGGGAGTGG+AGG | + | chr3.4:88757055-88757074 | None:intergenic | 40.0% | |
| TCATCAGCCTCATTGTAAAC+TGG | + | chr3.4:88758472-88758491 | None:intergenic | 40.0% | |
| TGACCAATGAGTGTGATGTT+TGG | + | chr3.4:88757768-88757787 | None:intergenic | 40.0% | |
| TTCCCAAACATCACACTCAT+TGG | - | chr3.4:88757762-88757781 | MS.gene41668:intron | 40.0% | |
| TTTGCTGGGTTTACATCATG+AGG | - | chr3.4:88757981-88758000 | MS.gene41668:intron | 40.0% | |
| ! | GGTTAGTTGAAAAGGACTTG+AGG | - | chr3.4:88755994-88756013 | MS.gene41668:CDS | 40.0% |
| ! | TTCATTGCTGTCTGGTTTGT+TGG | - | chr3.4:88758082-88758101 | MS.gene41668:intron | 40.0% |
| !! | AGTGATAGTGGTAATGAACC+TGG | - | chr3.4:88758709-88758728 | MS.gene41668:CDS | 40.0% |
| !!! | ACCCTGTTTTTTTACACAGG+AGG | + | chr3.4:88757533-88757552 | None:intergenic | 40.0% |
| !!! | TGTTGGTTCTTTTGGAACCT+TGG | + | chr3.4:88758410-88758429 | None:intergenic | 40.0% |
| AAAATGGTTGAACCTCGTCC+CGG | - | chr3.4:88757573-88757592 | MS.gene41668:intron | 45.0% | |
| AAGGTCACAGATTCTAGTCC+TGG | - | chr3.4:88757501-88757520 | MS.gene41668:intron | 45.0% | |
| AAGTTGTCAAAGGGGAGTCT+TGG | - | chr3.4:88757447-88757466 | MS.gene41668:intron | 45.0% | |
| ACCACATTTACCACGATCCA+AGG | - | chr3.4:88757111-88757130 | MS.gene41668:intron | 45.0% | |
| ACGAAGACGACGAATCAAAG+CGG | - | chr3.4:88758680-88758699 | MS.gene41668:CDS | 45.0% | |
| ACTCAGAGGAGATATCGATC+TGG | - | chr3.4:88758011-88758030 | MS.gene41668:intron | 45.0% | |
| AGCACAGAAAACAGCAACAG+GGG | + | chr3.4:88755597-88755616 | None:intergenic | 45.0% | |
| AGCTTCTGATGTTCTTGACG+AGG | - | chr3.4:88758654-88758673 | MS.gene41668:intron | 45.0% | |
| AGTGGAGGATAAGAATTGCG+AGG | + | chr3.4:88757040-88757059 | None:intergenic | 45.0% | |
| ATACTGAGCAATGAGAGCAG+CGG | + | chr3.4:88757204-88757223 | None:intergenic | 45.0% | |
| ATTTCCTTTCCAAGCGCGAT+AGG | + | chr3.4:88755420-88755439 | None:intergenic | 45.0% | |
| CAACAATATCCCACCAAGTG+GGG | + | chr3.4:88756543-88756562 | None:intergenic | 45.0% | |
| CAATACACTGACCAACCCAT+GGG | + | chr3.4:88757261-88757280 | None:intergenic | 45.0% | |
| CATGAGGATCAAGAACTCAG+AGG | - | chr3.4:88757997-88758016 | MS.gene41668:intron | 45.0% | |
| CGAAGGATCAACGGTATTTC+CGG | + | chr3.4:88755387-88755406 | None:intergenic | 45.0% | |
| CTTAGTCAATAAGGGAAGCC+CGG | + | chr3.4:88757627-88757646 | None:intergenic | 45.0% | |
| GATTTGATCATCACTGCCCA+TGG | - | chr3.4:88757242-88757261 | MS.gene41668:intron | 45.0% | |
| GCAGTATGCTTCACACAGAA+AGG | - | chr3.4:88758563-88758582 | MS.gene41668:CDS | 45.0% | |
| GGGAACAAAGCAGCAGAAAA+TGG | - | chr3.4:88758626-88758645 | MS.gene41668:intron | 45.0% | |
| GTTAAGAAATGGAGCTAGGG+AGG | - | chr3.4:88756587-88756606 | MS.gene41668:intron | 45.0% | |
| TCCTTGGATCGTGGTAAATG+TGG | + | chr3.4:88757115-88757134 | None:intergenic | 45.0% | |
| TCTGATGAGCGAAGGATCAA+CGG | + | chr3.4:88755396-88755415 | None:intergenic | 45.0% | |
| TTACAATGAGGCTGATGAGG+TGG | - | chr3.4:88758474-88758493 | MS.gene41668:CDS | 45.0% | |
| TTGGATCGTGGTAAATGTGG+TGG | + | chr3.4:88757112-88757131 | None:intergenic | 45.0% | |
| ! | GATAGTGGTAATGAACCTGG+TGG | - | chr3.4:88758712-88758731 | MS.gene41668:CDS | 45.0% |
| !! | ATTGCTGTCTGGTTTGTTGG+AGG | - | chr3.4:88758085-88758104 | MS.gene41668:intron | 45.0% |
| !! | CTTTCTAAGGCAGTCCTTGT+GGG | - | chr3.4:88758606-88758625 | MS.gene41668:intron | 45.0% |
| !! | GTTTTTGTTGAGTTGCCACC+AGG | + | chr3.4:88758730-88758749 | None:intergenic | 45.0% |
| !!! | AGGTGTTTTTTCTTGGAGGG+AGG | - | chr3.4:88755516-88755535 | MS.gene41668:CDS | 45.0% |
| !! | AATATAATAAAAAATAGTAA+TGG | - | chr3.4:88757702-88757721 | MS.gene41668:intron | 5.0% |
| AAGCGGATCACCAGTGATAG+TGG | - | chr3.4:88758697-88758716 | MS.gene41668:CDS | 50.0% | |
| ACTAAAGCTCCTGCATACGC+AGG | + | chr3.4:88757601-88757620 | None:intergenic | 50.0% | |
| AGAACCTATCGCGCTTGGAA+AGG | - | chr3.4:88755413-88755432 | MS.gene41668:CDS | 50.0% | |
| CCAATACACTGACCAACCCA+TGG | + | chr3.4:88757262-88757281 | None:intergenic | 50.0% | |
| CCACAAGGACTGCCTTAGAA+AGG | + | chr3.4:88758608-88758627 | None:intergenic | 50.0% | |
| CTAAAGCTCCTGCATACGCA+GGG | + | chr3.4:88757600-88757619 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGT+TGG | - | chr3.4:88756280-88756299 | MS.gene41668:intron | 50.0% | |
| GATCGTGGTAAATGTGGTGG+TGG | + | chr3.4:88757109-88757128 | None:intergenic | 50.0% | |
| TACTGAGCAATGAGAGCAGC+GGG | + | chr3.4:88757203-88757222 | None:intergenic | 50.0% | |
| TATGCCAGGATCTCTTCCTG+AGG | + | chr3.4:88757014-88757033 | None:intergenic | 50.0% | |
| TCATCAGAACCTATCGCGCT+TGG | - | chr3.4:88755408-88755427 | MS.gene41668:CDS | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+CGG | - | chr3.4:88757605-88757624 | MS.gene41668:intron | 50.0% |
| ! | CGATAGGTTCTGATGAGCGA+AGG | + | chr3.4:88755404-88755423 | None:intergenic | 50.0% |
| ! | GGGACGAGGTTCAACCATTT+TGG | + | chr3.4:88757574-88757593 | None:intergenic | 50.0% |
| ! | GGTTGGTCAGTGTATTGGAC+TGG | - | chr3.4:88757264-88757283 | MS.gene41668:intron | 50.0% |
| ! | TTACACAGGAGGCTGTTTCC+AGG | + | chr3.4:88757522-88757541 | None:intergenic | 50.0% |
| !! | CCATGGGTTGGTCAGTGTAT+TGG | - | chr3.4:88757259-88757278 | MS.gene41668:intron | 50.0% |
| !! | CCTTTCTAAGGCAGTCCTTG+TGG | - | chr3.4:88758605-88758624 | MS.gene41668:intron | 50.0% |
| !! | GGTTGACTTGTCGGTCATAC+CGG | + | chr3.4:88758309-88758328 | None:intergenic | 50.0% |
| !! | TCTGCTGCTTTGTTCCCACA+AGG | + | chr3.4:88758623-88758642 | None:intergenic | 50.0% |
| AATATCCCACCAAGTGGGGC+CGG | + | chr3.4:88756539-88756558 | None:intergenic | 55.0% | |
| ACTGAGCAATGAGAGCAGCG+GGG | + | chr3.4:88757202-88757221 | None:intergenic | 55.0% | |
| CTGACCTCAGGAAGAGATCC+TGG | - | chr3.4:88757007-88757026 | MS.gene41668:CDS | 55.0% | |
| GATCATCACTGCCCATGGGT+TGG | - | chr3.4:88757247-88757266 | MS.gene41668:intron | 55.0% | |
| TTTCCGGCTACTGAGTTCGC+CGG | + | chr3.4:88755371-88755390 | None:intergenic | 55.0% | |
| ! | GAATTGCGAGGCACTATGCC+AGG | + | chr3.4:88757028-88757047 | None:intergenic | 55.0% |
| ! | TGCAGGAGCTTTAGTGCACC+GGG | - | chr3.4:88757606-88757625 | MS.gene41668:intron | 55.0% |
| CACGGCGACAGCGCAATTAC+CGG | - | chr3.4:88757903-88757922 | MS.gene41668:intron | 60.0% | |
| ACCAAGTGGGGCCGGCTACA+TGG | + | chr3.4:88756531-88756550 | None:intergenic | 65.0% | |
| ATGTAGCCGGCCCCACTTGG+TGG | - | chr3.4:88756530-88756549 | MS.gene41668:intron | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | + | chr3.4:88757594-88757613 | None:intergenic | 65.0% | |
| GAGCAATGAGAGCAGCGGGG+AGG | + | chr3.4:88757199-88757218 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | + | chr3.4:88757595-88757614 | None:intergenic | 65.0% | |
| TCCATGTAGCCGGCCCCACT+TGG | - | chr3.4:88756527-88756546 | MS.gene41668:intron | 65.0% | |
| TGTAGCCGGCCCCACTTGGT+GGG | - | chr3.4:88756531-88756550 | MS.gene41668:intron | 65.0% | |
| CATACGCAGGGTCCGGGACG+AGG | + | chr3.4:88757588-88757607 | None:intergenic | 70.0% | |
| GCTACTGAGTTCGCCGGCGC+CGG | + | chr3.4:88755365-88755384 | None:intergenic | 70.0% | |
| GTCCCGGACCCTGCGTATGC+AGG | - | chr3.4:88757589-88757608 | MS.gene41668:intron | 70.0% | |
| ! | GCGCCGGCGAACTCAGTAGC+CGG | - | chr3.4:88755365-88755384 | MS.gene41668:CDS | 70.0% |
| ! | ACTGAGTTCGCCGGCGCCGG+AGG | + | chr3.4:88755362-88755381 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 88755353 | 88758759 | 88755353 | ID=MS.gene41668 |
| chr3.4 | mRNA | 88755353 | 88758759 | 88755353 | ID=MS.gene41668.t1;Parent=MS.gene41668 |
| chr3.4 | exon | 88758670 | 88758759 | 88758670 | ID=MS.gene41668.t1.exon1;Parent=MS.gene41668.t1 |
| chr3.4 | CDS | 88758670 | 88758759 | 88758670 | ID=cds.MS.gene41668.t1;Parent=MS.gene41668.t1 |
| chr3.4 | exon | 88758412 | 88758594 | 88758412 | ID=MS.gene41668.t1.exon2;Parent=MS.gene41668.t1 |
| chr3.4 | CDS | 88758412 | 88758594 | 88758412 | ID=cds.MS.gene41668.t1;Parent=MS.gene41668.t1 |
| chr3.4 | exon | 88756827 | 88757123 | 88756827 | ID=MS.gene41668.t1.exon3;Parent=MS.gene41668.t1 |
| chr3.4 | CDS | 88756827 | 88757123 | 88756827 | ID=cds.MS.gene41668.t1;Parent=MS.gene41668.t1 |
| chr3.4 | exon | 88755965 | 88756198 | 88755965 | ID=MS.gene41668.t1.exon4;Parent=MS.gene41668.t1 |
| chr3.4 | CDS | 88755965 | 88756198 | 88755965 | ID=cds.MS.gene41668.t1;Parent=MS.gene41668.t1 |
| chr3.4 | exon | 88755353 | 88755829 | 88755353 | ID=MS.gene41668.t1.exon5;Parent=MS.gene41668.t1 |
| chr3.4 | CDS | 88755353 | 88755829 | 88755353 | ID=cds.MS.gene41668.t1;Parent=MS.gene41668.t1 |
| Gene Sequence |
| Protein sequence |
