Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41829.t1 | XP_025983845.1 | 67.9 | 858 | 201 | 9 | 1 | 787 | 1 | 855 | 0.00E+00 | 1092 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41829.t1 | O22682 | 80.6 | 283 | 55 | 0 | 505 | 787 | 95 | 377 | 4.9e-127 | 456.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41829.t1 | A0A371FAR3 | 67.5 | 753 | 186 | 9 | 1 | 705 | 1 | 742 | 1.3e-277 | 965.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050099 | MS.gene41829 | 0.80106 | 1.08E-48 | -1.69E-46 |
MS.gene050642 | MS.gene41829 | 0.804035 | 2.62E-49 | -1.69E-46 |
MS.gene052600 | MS.gene41829 | 0.806457 | 8.15E-50 | -1.69E-46 |
MS.gene053907 | MS.gene41829 | 0.804733 | 1.87E-49 | -1.69E-46 |
MS.gene053971 | MS.gene41829 | 0.829236 | 5.76E-55 | -1.69E-46 |
MS.gene055971 | MS.gene41829 | 0.810091 | 1.37E-50 | -1.69E-46 |
MS.gene058276 | MS.gene41829 | 0.829628 | 4.63E-55 | -1.69E-46 |
MS.gene058743 | MS.gene41829 | 0.837456 | 5.14E-57 | -1.69E-46 |
MS.gene060407 | MS.gene41829 | 0.82086 | 5.49E-53 | -1.69E-46 |
MS.gene06090 | MS.gene41829 | 0.818825 | 1.60E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41829.t1 | MTR_7g087100 | 87.190 | 484 | 30 | 3 | 1 | 452 | 1 | 484 | 0.0 | 843 |
MS.gene41829.t1 | MTR_7g087110 | 97.959 | 343 | 7 | 0 | 445 | 787 | 1 | 343 | 0.0 | 685 |
MS.gene41829.t1 | MTR_6g027310 | 62.658 | 474 | 135 | 5 | 1 | 441 | 3 | 467 | 0.0 | 603 |
MS.gene41829.t1 | MTR_3g037720 | 60.165 | 364 | 111 | 3 | 110 | 441 | 111 | 472 | 5.65e-156 | 464 |
MS.gene41829.t1 | MTR_4g087490 | 57.944 | 321 | 125 | 1 | 477 | 787 | 15 | 335 | 1.20e-129 | 391 |
MS.gene41829.t1 | MTR_4g087510 | 54.829 | 321 | 126 | 3 | 477 | 787 | 15 | 326 | 7.41e-120 | 365 |
MS.gene41829.t1 | MTR_1g081610 | 63.390 | 295 | 98 | 1 | 503 | 787 | 2 | 296 | 1.66e-113 | 348 |
MS.gene41829.t1 | MTR_5g006340 | 63.103 | 290 | 97 | 1 | 508 | 787 | 7 | 296 | 2.19e-113 | 347 |
MS.gene41829.t1 | MTR_1g103690 | 63.448 | 290 | 96 | 1 | 508 | 787 | 7 | 296 | 7.09e-113 | 346 |
MS.gene41829.t1 | MTR_1g081620 | 59.862 | 289 | 106 | 1 | 509 | 787 | 7 | 295 | 6.84e-108 | 333 |
MS.gene41829.t1 | MTR_1g081625 | 60.554 | 289 | 104 | 1 | 509 | 787 | 7 | 295 | 1.34e-104 | 325 |
MS.gene41829.t1 | MTR_7g078070 | 50.467 | 321 | 145 | 2 | 479 | 785 | 27 | 347 | 3.31e-102 | 320 |
MS.gene41829.t1 | MTR_7g078070 | 53.571 | 280 | 120 | 1 | 516 | 785 | 8 | 287 | 3.36e-97 | 305 |
MS.gene41829.t1 | MTR_1g081640 | 58.633 | 278 | 105 | 1 | 509 | 776 | 7 | 284 | 4.21e-92 | 292 |
MS.gene41829.t1 | MTR_4g087520 | 63.900 | 241 | 77 | 1 | 557 | 787 | 1 | 241 | 3.20e-91 | 288 |
MS.gene41829.t1 | MTR_7g078070 | 52.569 | 253 | 110 | 1 | 543 | 785 | 2 | 254 | 2.30e-84 | 270 |
MS.gene41829.t1 | MTR_8g080490 | 37.673 | 361 | 183 | 4 | 114 | 441 | 49 | 400 | 1.07e-79 | 263 |
MS.gene41829.t1 | MTR_3g085480 | 37.260 | 365 | 180 | 4 | 114 | 441 | 50 | 402 | 7.33e-75 | 250 |
MS.gene41829.t1 | MTR_4g084200 | 35.733 | 389 | 197 | 9 | 114 | 457 | 92 | 472 | 1.03e-63 | 221 |
MS.gene41829.t1 | MTR_4g084200 | 37.870 | 338 | 170 | 6 | 114 | 416 | 92 | 424 | 7.74e-60 | 209 |
MS.gene41829.t1 | MTR_4g084200 | 37.537 | 341 | 173 | 6 | 114 | 419 | 92 | 427 | 2.36e-59 | 208 |
MS.gene41829.t1 | MTR_4g077920 | 30.750 | 400 | 216 | 7 | 87 | 439 | 75 | 460 | 1.90e-53 | 192 |
MS.gene41829.t1 | MTR_4g077920 | 30.424 | 401 | 218 | 7 | 87 | 440 | 75 | 461 | 2.87e-53 | 193 |
MS.gene41829.t1 | MTR_1g097090 | 30.846 | 402 | 204 | 11 | 110 | 441 | 51 | 448 | 3.25e-46 | 172 |
MS.gene41829.t1 | MTR_1g097090 | 30.846 | 402 | 204 | 11 | 110 | 441 | 51 | 448 | 5.75e-46 | 172 |
MS.gene41829.t1 | MTR_4g077920 | 33.333 | 255 | 135 | 2 | 221 | 440 | 149 | 403 | 1.58e-41 | 158 |
MS.gene41829.t1 | MTR_8g080490 | 36.264 | 182 | 105 | 3 | 114 | 293 | 49 | 221 | 5.74e-31 | 124 |
MS.gene41829.t1 | MTR_5g095670 | 28.097 | 331 | 170 | 6 | 513 | 776 | 48 | 377 | 7.21e-29 | 120 |
MS.gene41829.t1 | MTR_3g110200 | 26.190 | 294 | 168 | 9 | 192 | 448 | 310 | 591 | 1.87e-16 | 84.0 |
MS.gene41829.t1 | MTR_4g115540 | 25.606 | 289 | 175 | 10 | 185 | 439 | 333 | 615 | 1.44e-15 | 81.3 |
MS.gene41829.t1 | MTR_3g110198 | 25.243 | 309 | 196 | 9 | 168 | 445 | 287 | 591 | 1.20e-14 | 78.2 |
MS.gene41829.t1 | MTR_7g085840 | 24.275 | 276 | 169 | 9 | 188 | 435 | 51 | 314 | 1.52e-14 | 76.3 |
MS.gene41829.t1 | MTR_1g090733 | 25.589 | 297 | 164 | 11 | 187 | 444 | 266 | 544 | 4.89e-14 | 76.3 |
MS.gene41829.t1 | MTR_1g006600 | 25.510 | 294 | 180 | 9 | 188 | 449 | 302 | 588 | 5.63e-14 | 76.3 |
MS.gene41829.t1 | MTR_1g061760 | 35.455 | 110 | 68 | 1 | 330 | 439 | 369 | 475 | 8.47e-14 | 75.1 |
MS.gene41829.t1 | MTR_5g031480 | 32.692 | 104 | 67 | 1 | 332 | 435 | 302 | 402 | 1.19e-13 | 74.3 |
MS.gene41829.t1 | MTR_4g115460 | 33.636 | 110 | 70 | 1 | 330 | 439 | 347 | 453 | 1.37e-13 | 74.3 |
MS.gene41829.t1 | MTR_3g081240 | 24.055 | 291 | 177 | 8 | 183 | 439 | 157 | 437 | 1.77e-13 | 73.9 |
MS.gene41829.t1 | MTR_7g103270 | 36.364 | 110 | 67 | 1 | 330 | 439 | 283 | 389 | 3.41e-13 | 72.8 |
MS.gene41829.t1 | MTR_7g103260 | 33.083 | 133 | 85 | 2 | 307 | 439 | 260 | 388 | 3.51e-13 | 72.8 |
MS.gene41829.t1 | MTR_8g102840 | 22.924 | 301 | 180 | 8 | 187 | 448 | 323 | 610 | 5.07e-13 | 73.2 |
MS.gene41829.t1 | MTR_7g103150 | 23.885 | 314 | 192 | 10 | 168 | 444 | 178 | 481 | 9.37e-13 | 72.0 |
MS.gene41829.t1 | MTR_3g080690 | 23.077 | 299 | 186 | 8 | 183 | 447 | 155 | 443 | 1.03e-12 | 71.6 |
MS.gene41829.t1 | MTR_3g097310 | 34.545 | 110 | 69 | 1 | 330 | 439 | 376 | 482 | 1.40e-12 | 71.2 |
MS.gene41829.t1 | MTR_4g115530 | 26.481 | 287 | 159 | 13 | 193 | 439 | 107 | 381 | 1.73e-12 | 70.5 |
MS.gene41829.t1 | MTR_4g115530 | 26.481 | 287 | 159 | 13 | 193 | 439 | 53 | 327 | 1.95e-12 | 69.7 |
MS.gene41829.t1 | MTR_4g100730 | 35.652 | 115 | 71 | 1 | 330 | 444 | 421 | 532 | 6.40e-12 | 69.3 |
MS.gene41829.t1 | MTR_5g049790 | 30.631 | 111 | 72 | 2 | 325 | 435 | 317 | 422 | 3.24e-11 | 66.6 |
MS.gene41829.t1 | MTR_3g106690 | 31.818 | 110 | 72 | 1 | 330 | 439 | 276 | 382 | 7.65e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41829.t1 | AT3G45400 | 57.749 | 471 | 134 | 5 | 1 | 441 | 3 | 438 | 0.0 | 532 |
MS.gene41829.t1 | AT3G03650 | 52.838 | 458 | 165 | 8 | 29 | 441 | 29 | 480 | 8.73e-165 | 487 |
MS.gene41829.t1 | AT3G03630 | 80.565 | 283 | 55 | 0 | 505 | 787 | 95 | 377 | 1.63e-149 | 444 |
MS.gene41829.t1 | AT1G74680 | 49.462 | 465 | 162 | 6 | 11 | 441 | 9 | 434 | 3.90e-148 | 442 |
MS.gene41829.t1 | AT3G59760 | 62.500 | 312 | 101 | 2 | 503 | 798 | 107 | 418 | 1.34e-119 | 368 |
MS.gene41829.t1 | AT3G59760 | 62.500 | 312 | 101 | 2 | 503 | 798 | 107 | 418 | 1.38e-119 | 368 |
MS.gene41829.t1 | AT3G59760 | 64.407 | 295 | 95 | 1 | 503 | 787 | 107 | 401 | 4.58e-119 | 366 |
MS.gene41829.t1 | AT2G43750 | 63.390 | 295 | 98 | 1 | 503 | 787 | 69 | 363 | 3.67e-118 | 362 |
MS.gene41829.t1 | AT2G43750 | 63.390 | 295 | 98 | 1 | 503 | 787 | 69 | 363 | 3.67e-118 | 362 |
MS.gene41829.t1 | AT4G14880 | 64.014 | 289 | 94 | 1 | 506 | 784 | 2 | 290 | 3.09e-114 | 350 |
MS.gene41829.t1 | AT4G14880 | 64.014 | 289 | 94 | 1 | 506 | 784 | 2 | 290 | 3.09e-114 | 350 |
MS.gene41829.t1 | AT4G14880 | 64.014 | 289 | 94 | 1 | 506 | 784 | 2 | 290 | 3.09e-114 | 350 |
MS.gene41829.t1 | AT4G14880 | 64.014 | 289 | 94 | 1 | 506 | 784 | 2 | 290 | 3.09e-114 | 350 |
MS.gene41829.t1 | AT4G14880 | 64.014 | 289 | 94 | 1 | 506 | 784 | 2 | 290 | 3.09e-114 | 350 |
MS.gene41829.t1 | AT3G04940 | 58.362 | 293 | 112 | 1 | 505 | 787 | 4 | 296 | 2.15e-106 | 329 |
MS.gene41829.t1 | AT3G04940 | 58.362 | 293 | 112 | 1 | 505 | 787 | 4 | 296 | 2.15e-106 | 329 |
MS.gene41829.t1 | AT3G61440 | 51.935 | 310 | 136 | 2 | 489 | 785 | 26 | 335 | 8.11e-99 | 311 |
MS.gene41829.t1 | AT5G28020 | 56.314 | 293 | 118 | 1 | 505 | 787 | 3 | 295 | 5.47e-98 | 307 |
MS.gene41829.t1 | AT5G28020 | 56.314 | 293 | 118 | 1 | 505 | 787 | 3 | 295 | 5.47e-98 | 307 |
MS.gene41829.t1 | AT5G28020 | 56.314 | 293 | 118 | 1 | 505 | 787 | 3 | 295 | 5.47e-98 | 307 |
MS.gene41829.t1 | AT5G28020 | 56.314 | 293 | 118 | 1 | 505 | 787 | 3 | 295 | 5.47e-98 | 307 |
MS.gene41829.t1 | AT5G28020 | 56.314 | 293 | 118 | 1 | 505 | 787 | 3 | 295 | 5.47e-98 | 307 |
MS.gene41829.t1 | AT5G28030 | 56.997 | 293 | 116 | 1 | 505 | 787 | 3 | 295 | 1.66e-97 | 306 |
MS.gene41829.t1 | AT5G28030 | 56.997 | 293 | 116 | 1 | 505 | 787 | 3 | 295 | 1.66e-97 | 306 |
MS.gene41829.t1 | AT5G28030 | 56.997 | 293 | 116 | 1 | 505 | 787 | 3 | 295 | 1.66e-97 | 306 |
MS.gene41829.t1 | AT5G28030 | 56.997 | 293 | 116 | 1 | 505 | 787 | 3 | 295 | 1.66e-97 | 306 |
MS.gene41829.t1 | AT3G61440 | 49.826 | 287 | 131 | 2 | 489 | 762 | 26 | 312 | 3.35e-87 | 280 |
MS.gene41829.t1 | AT3G22460 | 67.935 | 184 | 59 | 0 | 506 | 689 | 5 | 188 | 1.40e-85 | 270 |
MS.gene41829.t1 | AT3G22460 | 58.577 | 239 | 69 | 2 | 557 | 785 | 1 | 219 | 2.39e-83 | 266 |
MS.gene41829.t1 | AT5G28030 | 54.183 | 251 | 105 | 1 | 505 | 745 | 3 | 253 | 2.73e-83 | 266 |
MS.gene41829.t1 | AT1G67410 | 39.286 | 364 | 177 | 4 | 114 | 441 | 53 | 408 | 2.13e-81 | 268 |
MS.gene41829.t1 | AT3G61440 | 54.812 | 239 | 98 | 1 | 557 | 785 | 1 | 239 | 6.16e-79 | 255 |
MS.gene41829.t1 | AT3G61440 | 53.991 | 213 | 88 | 1 | 583 | 785 | 2 | 214 | 4.20e-67 | 223 |
MS.gene41829.t1 | AT2G35100 | 33.580 | 405 | 219 | 8 | 102 | 465 | 48 | 443 | 4.67e-63 | 219 |
MS.gene41829.t1 | AT5G44930 | 34.021 | 388 | 201 | 8 | 115 | 463 | 66 | 437 | 6.50e-60 | 210 |
MS.gene41829.t1 | AT5G44930 | 34.021 | 388 | 201 | 8 | 115 | 463 | 66 | 437 | 6.50e-60 | 210 |
MS.gene41829.t1 | AT5G44930 | 36.170 | 329 | 169 | 6 | 115 | 415 | 66 | 381 | 5.98e-55 | 194 |
MS.gene41829.t1 | AT5G28020 | 51.675 | 209 | 91 | 1 | 589 | 787 | 1 | 209 | 2.72e-53 | 185 |
MS.gene41829.t1 | AT5G16890 | 30.691 | 391 | 213 | 7 | 114 | 458 | 118 | 496 | 5.23e-50 | 184 |
MS.gene41829.t1 | AT1G34270 | 31.387 | 411 | 213 | 11 | 102 | 445 | 45 | 453 | 2.71e-47 | 176 |
MS.gene41829.t1 | AT1G67410 | 37.363 | 182 | 104 | 3 | 114 | 293 | 53 | 226 | 3.58e-33 | 130 |
MS.gene41829.t1 | AT1G55880 | 27.439 | 328 | 169 | 5 | 517 | 776 | 48 | 374 | 3.78e-29 | 121 |
MS.gene41829.t1 | AT1G55880 | 30.085 | 236 | 123 | 4 | 517 | 711 | 48 | 282 | 4.77e-27 | 114 |
MS.gene41829.t1 | AT3G42180 | 35.616 | 146 | 87 | 4 | 295 | 439 | 191 | 330 | 2.02e-15 | 79.0 |
MS.gene41829.t1 | AT3G42180 | 35.616 | 146 | 87 | 4 | 295 | 439 | 320 | 459 | 3.08e-15 | 79.7 |
MS.gene41829.t1 | AT5G19670 | 23.490 | 298 | 176 | 8 | 187 | 445 | 321 | 605 | 4.99e-14 | 76.3 |
MS.gene41829.t1 | AT5G19670 | 23.490 | 298 | 176 | 8 | 187 | 445 | 321 | 605 | 4.99e-14 | 76.3 |
MS.gene41829.t1 | AT4G38040 | 34.951 | 103 | 64 | 1 | 333 | 435 | 313 | 412 | 5.53e-14 | 75.5 |
MS.gene41829.t1 | AT5G25820 | 23.630 | 292 | 188 | 6 | 188 | 448 | 366 | 653 | 5.72e-14 | 76.3 |
MS.gene41829.t1 | AT4G32790 | 23.871 | 310 | 200 | 9 | 170 | 447 | 288 | 593 | 1.31e-13 | 75.1 |
MS.gene41829.t1 | AT4G32790 | 23.871 | 310 | 200 | 9 | 170 | 447 | 288 | 593 | 1.31e-13 | 75.1 |
MS.gene41829.t1 | AT4G32790 | 23.871 | 310 | 200 | 9 | 170 | 447 | 288 | 593 | 1.31e-13 | 75.1 |
MS.gene41829.t1 | AT5G03795 | 33.628 | 113 | 72 | 1 | 327 | 439 | 397 | 506 | 1.90e-13 | 74.3 |
MS.gene41829.t1 | AT5G11130 | 34.932 | 146 | 88 | 4 | 295 | 439 | 184 | 323 | 2.03e-13 | 72.8 |
MS.gene41829.t1 | AT5G11130 | 34.932 | 146 | 88 | 4 | 295 | 439 | 328 | 467 | 3.33e-13 | 73.2 |
MS.gene41829.t1 | AT5G33290 | 24.930 | 357 | 220 | 13 | 118 | 439 | 146 | 489 | 3.51e-13 | 73.2 |
MS.gene41829.t1 | AT5G37000 | 25.000 | 236 | 145 | 6 | 238 | 444 | 316 | 548 | 8.84e-13 | 72.4 |
MS.gene41829.t1 | AT5G20260 | 30.435 | 161 | 99 | 4 | 284 | 439 | 172 | 324 | 1.67e-12 | 70.1 |
MS.gene41829.t1 | AT5G20260 | 30.435 | 161 | 99 | 4 | 284 | 439 | 199 | 351 | 2.09e-12 | 70.1 |
MS.gene41829.t1 | AT5G20260 | 30.435 | 161 | 99 | 4 | 284 | 439 | 304 | 456 | 2.65e-12 | 70.5 |
MS.gene41829.t1 | AT4G16745 | 28.859 | 149 | 100 | 3 | 293 | 439 | 379 | 523 | 5.87e-12 | 69.7 |
MS.gene41829.t1 | AT3G07620 | 32.174 | 115 | 75 | 1 | 325 | 439 | 338 | 449 | 1.33e-11 | 68.2 |
MS.gene41829.t1 | AT5G25310 | 33.043 | 115 | 74 | 1 | 325 | 439 | 359 | 470 | 1.37e-11 | 68.2 |
Find 170 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTCTAGCAGGATAAATTTC+TGG | 0.193447 | 7.3:+21746102 | None:intergenic |
GCGAACAAATACACAGAATT+TGG | 0.196494 | 7.3:+21744534 | None:intergenic |
AATGGGTAATGTTGATTTAT+TGG | 0.219728 | 7.3:-21741466 | MS.gene41829:CDS |
GCAAGACGGCCTGAAAATTC+TGG | 0.224053 | 7.3:-21739905 | MS.gene41829:CDS |
TTGTTTCAAGAAAATCTTTA+TGG | 0.226443 | 7.3:-21746596 | MS.gene41829:CDS |
TTATCAACATTTGCTATATT+AGG | 0.246718 | 7.3:+21745796 | None:intergenic |
CTGCACCAAATGTGCGTAAA+AGG | 0.266577 | 7.3:+21741785 | None:intergenic |
GAGAAATGCTTCTGCCATTA+AGG | 0.275050 | 7.3:-21746619 | MS.gene41829:CDS |
TACCTCCCGAGTTTCATTTC+GGG | 0.285614 | 7.3:-21746266 | MS.gene41829:CDS |
TGCAACACAGCATTGAATAT+TGG | 0.293864 | 7.3:-21746155 | MS.gene41829:CDS |
AGGTTTCATACCAAGCATTT+TGG | 0.299848 | 7.3:-21740708 | MS.gene41829:CDS |
TGAATTTCAGTTCCCTTCTA+AGG | 0.299867 | 7.3:-21744404 | MS.gene41829:CDS |
AGCATTGGAAGAAGGATTAC+TGG | 0.317790 | 7.3:-21740326 | MS.gene41829:intron |
AAACTACAGGGCCTGAGATA+TGG | 0.320270 | 7.3:-21741497 | MS.gene41829:CDS |
GATTTATTGGTTGCTGCTAT+TGG | 0.320316 | 7.3:-21741453 | MS.gene41829:CDS |
GTTTGATATGGTGGCTGTTT+CGG | 0.320571 | 7.3:+21746344 | None:intergenic |
CTAGCATCCAACATACTATT+AGG | 0.323984 | 7.3:+21745871 | None:intergenic |
TTCATTTCGGGTTATTAGAT+TGG | 0.325906 | 7.3:-21746254 | MS.gene41829:CDS |
CTTGGTGTCGTCGTTTGATA+TGG | 0.339762 | 7.3:+21746332 | None:intergenic |
TATTGTTTAATTAGGTGGTT+GGG | 0.342626 | 7.3:-21740894 | MS.gene41829:intron |
TTACCTCCCGAGTTTCATTT+CGG | 0.344970 | 7.3:-21746267 | MS.gene41829:CDS |
ACAGCATCACCTTCCTTAGA+AGG | 0.347096 | 7.3:+21744391 | None:intergenic |
ATGCGGAGAAGGGGCTGAAA+GGG | 0.349505 | 7.3:-21741747 | MS.gene41829:CDS |
GAACCAATAACATGCTTATA+CGG | 0.358359 | 7.3:+21745760 | None:intergenic |
GGAACTGGCGGCACTATTAC+AGG | 0.362045 | 7.3:-21741432 | MS.gene41829:CDS |
TTGGTTGCTGCTATTGGAAC+TGG | 0.363826 | 7.3:-21741447 | MS.gene41829:CDS |
TCAGACAATATAAAAGTTGC+AGG | 0.377802 | 7.3:+21745835 | None:intergenic |
TGTTTCGACAGTTTGATAAC+AGG | 0.383372 | 7.3:-21741675 | MS.gene41829:CDS |
GACATCTTCGGCAATGTTAA+CGG | 0.386866 | 7.3:+21742900 | None:intergenic |
AGTATCTGATAAACTTCATT+AGG | 0.392083 | 7.3:-21744489 | MS.gene41829:CDS |
GTGATGCTGTTCAAATGATT+TGG | 0.394778 | 7.3:-21744378 | MS.gene41829:CDS |
ATAAACTTCATTAGGAGTAT+TGG | 0.396484 | 7.3:-21744481 | MS.gene41829:CDS |
CGGAAATTGTTCGGCGGAAA+CGG | 0.397606 | 7.3:+21742980 | None:intergenic |
TGGAAGGGATCATTTGATCT+TGG | 0.403838 | 7.3:-21745902 | MS.gene41829:CDS |
GGAGGAAGAATTGTTGTAGA+AGG | 0.410209 | 7.3:+21743039 | None:intergenic |
CAATGTTGAAGCTATTGAAA+TGG | 0.412094 | 7.3:-21740359 | MS.gene41829:CDS |
TGGCGGTTGCGGAAATTGTT+CGG | 0.412179 | 7.3:+21742971 | None:intergenic |
AACTACAGGGCCTGAGATAT+GGG | 0.414262 | 7.3:-21741496 | MS.gene41829:CDS |
GAGAGTGGAGCGATTTCTCC+AGG | 0.414927 | 7.3:-21742054 | MS.gene41829:CDS |
AATGAATGAATGCAGTTGAT+TGG | 0.422069 | 7.3:-21742724 | MS.gene41829:intron |
TCGAATAAGCGGTTTGATGA+TGG | 0.426626 | 7.3:+21744634 | None:intergenic |
TGAACCTACAACTGGAAATA+CGG | 0.427191 | 7.3:-21741893 | MS.gene41829:CDS |
AATCTTAGAAACGAAGATAA+TGG | 0.435369 | 7.3:-21743103 | MS.gene41829:intron |
TATAACAGACACTCCAAAAC+AGG | 0.436728 | 7.3:-21746012 | MS.gene41829:CDS |
AGTGGAGACGGTGGCGGTTG+CGG | 0.445610 | 7.3:+21742960 | None:intergenic |
GACACTTCTGCAAGGTTCCA+TGG | 0.445890 | 7.3:+21742630 | None:intergenic |
GCCAGGGTAATGTGGTATCT+TGG | 0.446090 | 7.3:+21746188 | None:intergenic |
TGAACCGTCGTTGGAGGAGG+TGG | 0.458294 | 7.3:+21746470 | None:intergenic |
TAGTCGAGAACGTCCTCATA+TGG | 0.460535 | 7.3:+21744559 | None:intergenic |
AGTCCCGTATTTCCAGTTGT+AGG | 0.463176 | 7.3:+21741889 | None:intergenic |
CACAAATATAACATCAGCTT+CGG | 0.464973 | 7.3:+21746056 | None:intergenic |
GGCGGCACTATTACAGGCAC+TGG | 0.468519 | 7.3:-21741426 | MS.gene41829:CDS |
CTCTCAATATTAACAGAAGC+AGG | 0.470025 | 7.3:+21741814 | None:intergenic |
AATGCGGAGAAGGGGCTGAA+AGG | 0.474410 | 7.3:-21741748 | MS.gene41829:CDS |
ATATTGTTTAATTAGGTGGT+TGG | 0.476644 | 7.3:-21740895 | MS.gene41829:intron |
CTTTCCACCTCCTCCAACGA+CGG | 0.477299 | 7.3:-21746474 | MS.gene41829:CDS |
CATTTCAATAGCTTCAACAT+TGG | 0.481271 | 7.3:+21740360 | None:intergenic |
CAGATCCACTTCGAAACTAC+AGG | 0.481457 | 7.3:-21741510 | MS.gene41829:CDS |
TGTTGCAAATTCAAACCGCC+AGG | 0.483471 | 7.3:+21746171 | None:intergenic |
TCAACATTTGCTATATTAGG+AGG | 0.487775 | 7.3:+21745799 | None:intergenic |
AACGGCGTCAAGTCCTTCTC+TGG | 0.489128 | 7.3:+21742918 | None:intergenic |
CATTGAATATTGGCTTACAT+TGG | 0.489340 | 7.3:-21746145 | MS.gene41829:CDS |
CAAGGTGTTGCAAGAGAAGT+TGG | 0.489770 | 7.3:-21745965 | MS.gene41829:CDS |
ATCATTTGCCACTTCTGTGA+AGG | 0.493542 | 7.3:+21739440 | None:intergenic |
ATTTGATGAGTCAAGAAGAA+TGG | 0.498955 | 7.3:-21745936 | MS.gene41829:CDS |
AAATTCTGCCTCAACATAGC+TGG | 0.502760 | 7.3:-21744664 | MS.gene41829:CDS |
CCTTCACAACATACCTTCCC+TGG | 0.506907 | 7.3:+21742036 | None:intergenic |
ATTGTATCCTCCCATATCTC+AGG | 0.508627 | 7.3:+21741486 | None:intergenic |
ATTTGAACCGTCGTTGGAGG+AGG | 0.508647 | 7.3:+21746467 | None:intergenic |
ATTGTTTAATTAGGTGGTTG+GGG | 0.510652 | 7.3:-21740893 | MS.gene41829:intron |
CAAGAAGAATGGAAAAGGTC+TGG | 0.511048 | 7.3:-21745925 | MS.gene41829:CDS |
GGAATTTGAACCGTCGTTGG+AGG | 0.511469 | 7.3:+21746464 | None:intergenic |
AGGAGATTAGCATTGGAAGA+AGG | 0.512069 | 7.3:-21740334 | MS.gene41829:CDS |
TGCTGCAAAACTTGAATCCA+TGG | 0.513342 | 7.3:-21742647 | MS.gene41829:CDS |
AATGGAAAAGGTCTGGTGGA+AGG | 0.516163 | 7.3:-21745918 | MS.gene41829:CDS |
AATGGCAAGGAGATTAGCAT+TGG | 0.519243 | 7.3:-21740341 | MS.gene41829:CDS |
TGAGTCAAGAAGAATGGAAA+AGG | 0.519701 | 7.3:-21745930 | MS.gene41829:CDS |
CTGTCGAAACATGTAAGCAT+TGG | 0.520384 | 7.3:+21741687 | None:intergenic |
TGTCGAAACATGTAAGCATT+GGG | 0.521342 | 7.3:+21741688 | None:intergenic |
GAGATTATACTTCTATCTGC+AGG | 0.521691 | 7.3:+21740865 | None:intergenic |
TTCGGCGGAAACGGATGTTA+CGG | 0.521778 | 7.3:+21742989 | None:intergenic |
GCAGATAGAAGTATAATCTC+AGG | 0.522284 | 7.3:-21740862 | MS.gene41829:CDS |
TCATTTGCCACTTCTGTGAA+GGG | 0.524750 | 7.3:+21739441 | None:intergenic |
TTTCAGTTCCCTTCTAAGGA+AGG | 0.527402 | 7.3:-21744400 | MS.gene41829:CDS |
ATTTCATCACTGATTATGAC+AGG | 0.535171 | 7.3:+21744589 | None:intergenic |
TGAAATTGAGCTTCCATATG+AGG | 0.536269 | 7.3:-21744572 | MS.gene41829:CDS |
AAGTACCTGAGTGACATCTT+CGG | 0.537012 | 7.3:+21742888 | None:intergenic |
TGTACTCCCCTTCACAGAAG+TGG | 0.540170 | 7.3:-21739448 | MS.gene41829:CDS |
GTGTACAGAAAGGTGGAGTG+AGG | 0.542472 | 7.3:-21744714 | MS.gene41829:CDS |
AAACAGGTCCACGTGAAAAG+AGG | 0.544292 | 7.3:-21745996 | MS.gene41829:CDS |
GAAGAGTGACGGAGTGGAGA+CGG | 0.545076 | 7.3:+21742948 | None:intergenic |
TGCGGAGAAGGGGCTGAAAG+GGG | 0.545130 | 7.3:-21741746 | MS.gene41829:CDS |
ACAACTGGAAATACGGGACT+TGG | 0.546776 | 7.3:-21741886 | MS.gene41829:CDS |
CTGCTTCTGTTAATATTGAG+AGG | 0.547745 | 7.3:-21741813 | MS.gene41829:CDS |
TGGATGCTAGAATGAAACTT+TGG | 0.548305 | 7.3:-21745858 | MS.gene41829:CDS |
GGAGTGAGGAATGCAACAAA+TGG | 0.552444 | 7.3:-21744700 | MS.gene41829:CDS |
TCTGTGTATTTGTTCGCACA+AGG | 0.553347 | 7.3:-21744528 | MS.gene41829:CDS |
TGAGATATGGGAGGATACAA+TGG | 0.558055 | 7.3:-21741484 | MS.gene41829:CDS |
TATGGAATTTGAACCGTCGT+TGG | 0.559431 | 7.3:+21746461 | None:intergenic |
GAACCTACAACTGGAAATAC+GGG | 0.559847 | 7.3:-21741892 | MS.gene41829:CDS |
ATGGAAAAGGTCTGGTGGAA+GGG | 0.561038 | 7.3:-21745917 | MS.gene41829:CDS |
CTTGCAGAAGTGTCAAGGAT+AGG | 0.564739 | 7.3:-21742621 | MS.gene41829:intron |
TTCAAACCGCCAGGGTAATG+TGG | 0.568193 | 7.3:+21746180 | None:intergenic |
TTCGGGTTATTAGATTGGAA+AGG | 0.570951 | 7.3:-21746249 | MS.gene41829:CDS |
TTTACGCACATTTGGTGCAG+AGG | 0.570954 | 7.3:-21741782 | MS.gene41829:CDS |
ATAATCTCAGGAGACAATCC+AGG | 0.573091 | 7.3:-21740850 | MS.gene41829:intron |
GGTAGAGAAGAGTGACGGAG+TGG | 0.573405 | 7.3:+21742942 | None:intergenic |
GAGGATTGCTCTATTGCTGA+AGG | 0.573907 | 7.3:+21746410 | None:intergenic |
AGTTTGATATCCAAAATGCT+TGG | 0.575054 | 7.3:+21740698 | None:intergenic |
GTTTAATTAGGTGGTTGGGG+TGG | 0.575507 | 7.3:-21740890 | MS.gene41829:intron |
GAGATATGGGAGGATACAAT+GGG | 0.579255 | 7.3:-21741483 | MS.gene41829:CDS |
ACTCTGATTACAGTTCTAGC+AGG | 0.580991 | 7.3:+21746090 | None:intergenic |
ATGCACAGGGAGGTTATGCT+AGG | 0.581626 | 7.3:-21744792 | MS.gene41829:intron |
TATCTGAATAAAGTTACAGA+TGG | 0.581662 | 7.3:-21742685 | MS.gene41829:CDS |
GGTGTCGTCGTTTGATATGG+TGG | 0.582583 | 7.3:+21746335 | None:intergenic |
TAATAACCCGAAATGAAACT+CGG | 0.584513 | 7.3:+21746260 | None:intergenic |
CTCTTCTCTACCACCAGAGA+AGG | 0.585995 | 7.3:-21742931 | MS.gene41829:CDS |
AGAAGCTGTGAGATGGTGGC+TGG | 0.587550 | 7.3:+21746495 | None:intergenic |
GGTGGAAAGAAGCTGTGAGA+TGG | 0.590689 | 7.3:+21746488 | None:intergenic |
TCATCATCCTAATAGTATGT+TGG | 0.591872 | 7.3:-21745878 | MS.gene41829:CDS |
TCATTTGGGAGTGTACAGAA+AGG | 0.593049 | 7.3:-21744724 | MS.gene41829:CDS |
CAGTTTATAACCCTTTGTTG+CGG | 0.593956 | 7.3:+21741849 | None:intergenic |
GTAGTGAAAGGACGCGAAGG+AGG | 0.594872 | 7.3:+21743021 | None:intergenic |
AATAACCCGAAATGAAACTC+GGG | 0.595114 | 7.3:+21746261 | None:intergenic |
CGGTGGAATTGAGTAGTGAA+AGG | 0.596011 | 7.3:+21743009 | None:intergenic |
CATTTGCCACTTCTGTGAAG+GGG | 0.596450 | 7.3:+21739442 | None:intergenic |
TGACGGAGTGGAGACGGTGG+CGG | 0.598117 | 7.3:+21742954 | None:intergenic |
TTTGGGAGTGTACAGAAAGG+TGG | 0.600616 | 7.3:-21744721 | MS.gene41829:CDS |
TTGTTGCGGCAACAAAAGCA+AGG | 0.601294 | 7.3:+21741863 | None:intergenic |
CTGTGTATTTGTTCGCACAA+GGG | 0.601364 | 7.3:-21744527 | MS.gene41829:CDS |
TTGAAGCTATTGAAATGGCA+AGG | 0.601957 | 7.3:-21740354 | MS.gene41829:CDS |
ACTTTATTCAGATATATCAT+CGG | 0.603173 | 7.3:+21742694 | None:intergenic |
CTATCCTTGACACTTCTGCA+AGG | 0.605345 | 7.3:+21742622 | None:intergenic |
AGGAACACAGTGACTTGCAA+TGG | 0.606073 | 7.3:+21744609 | None:intergenic |
TTGCAATGGCATCGAATAAG+CGG | 0.607378 | 7.3:+21744623 | None:intergenic |
GGAGTATTGGCAAAGATGAG+TGG | 0.610229 | 7.3:-21744468 | MS.gene41829:CDS |
GGAACCTTGCAGAAGTGTCA+AGG | 0.610247 | 7.3:-21742626 | MS.gene41829:CDS |
CAGCATCACCTTCCTTAGAA+GGG | 0.611717 | 7.3:+21744392 | None:intergenic |
AAGATGAGTGGACAAGAATG+TGG | 0.615558 | 7.3:-21744456 | MS.gene41829:CDS |
GCGTGTCGCCAGCTATGTTG+AGG | 0.616254 | 7.3:+21744656 | None:intergenic |
GAAGAATGGAAAAGGTCTGG+TGG | 0.626298 | 7.3:-21745922 | MS.gene41829:CDS |
GGCGTCAAGTCCTTCTCTGG+TGG | 0.626862 | 7.3:+21742921 | None:intergenic |
TGTTGCAAGAGAAGTTGGTG+AGG | 0.628797 | 7.3:-21745960 | MS.gene41829:CDS |
CAGGCCCTGTAGTTTCGAAG+TGG | 0.631210 | 7.3:+21741505 | None:intergenic |
AAACATGTAAGCATTGGGTG+TGG | 0.635335 | 7.3:+21741693 | None:intergenic |
TGAGTAGTGAAAGGACGCGA+AGG | 0.635583 | 7.3:+21743018 | None:intergenic |
AGAGTGGAGCGATTTCTCCA+GGG | 0.637860 | 7.3:-21742053 | MS.gene41829:CDS |
ACTGCTTGATGAAGTCGTCA+AGG | 0.643890 | 7.3:-21740678 | MS.gene41829:intron |
TTAGCTGATGCTGAAGAGAG+TGG | 0.644083 | 7.3:-21742069 | MS.gene41829:CDS |
GAGTGACGGAGTGGAGACGG+TGG | 0.648563 | 7.3:+21742951 | None:intergenic |
CATTGCCGAAGATGTCACTC+AGG | 0.650049 | 7.3:-21742893 | MS.gene41829:intron |
AGATCCACTTCGAAACTACA+GGG | 0.651275 | 7.3:-21741509 | MS.gene41829:CDS |
GGAAAGAAGCTGTGAGATGG+TGG | 0.657374 | 7.3:+21746491 | None:intergenic |
TTGAATCTGAACGTGTGGAA+CGG | 0.658125 | 7.3:+21746520 | None:intergenic |
CTGCGATAACTTTAGCAAGA+CGG | 0.659607 | 7.3:-21739919 | MS.gene41829:CDS |
TGGAGCGATTTCTCCAGGGA+AGG | 0.660537 | 7.3:-21742049 | MS.gene41829:intron |
AAATTCTGGAAAACTTATAG+CGG | 0.664780 | 7.3:-21739891 | MS.gene41829:intron |
ACCAAGATACCACATTACCC+TGG | 0.665681 | 7.3:-21746189 | MS.gene41829:CDS |
AACCCGAAATGAAACTCGGG+AGG | 0.666814 | 7.3:+21746264 | None:intergenic |
GATTGCTCTATTGCTGAAGG+AGG | 0.667776 | 7.3:+21746413 | None:intergenic |
CTGGTGGTAGAGAAGAGTGA+CGG | 0.669365 | 7.3:+21742937 | None:intergenic |
TGAAAAGAGGAGTAGAAACA+AGG | 0.677074 | 7.3:-21745983 | MS.gene41829:CDS |
GTTGCAAATTCAAACCGCCA+GGG | 0.677448 | 7.3:+21746172 | None:intergenic |
GGCGGAAACGGATGTTACGG+TGG | 0.687677 | 7.3:+21742992 | None:intergenic |
TGGTGTTGAATCTGAACGTG+TGG | 0.697383 | 7.3:+21746515 | None:intergenic |
GTTGCTGCTATTGGAACTGG+CGG | 0.697744 | 7.3:-21741444 | MS.gene41829:CDS |
TGATAACAGGAATAACACAA+AGG | 0.697943 | 7.3:-21741662 | MS.gene41829:intron |
CGGTTGCGGAAATTGTTCGG+CGG | 0.700758 | 7.3:+21742974 | None:intergenic |
TACAGGGCCTGAGATATGGG+AGG | 0.706408 | 7.3:-21741493 | MS.gene41829:CDS |
AAGATACCACATTACCCTGG+CGG | 0.723602 | 7.3:-21746186 | MS.gene41829:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 21739441 | 21746649 | 21739441 | ID=MS.gene41829 |
chr7.3 | mRNA | 21739441 | 21746649 | 21739441 | ID=MS.gene41829.t1;Parent=MS.gene41829 |
chr7.3 | exon | 21745771 | 21746649 | 21745771 | ID=MS.gene41829.t1.exon1;Parent=MS.gene41829.t1 |
chr7.3 | CDS | 21745771 | 21746649 | 21745771 | ID=cds.MS.gene41829.t1;Parent=MS.gene41829.t1 |
chr7.3 | exon | 21744365 | 21744806 | 21744365 | ID=MS.gene41829.t1.exon2;Parent=MS.gene41829.t1 |
chr7.3 | CDS | 21744365 | 21744806 | 21744365 | ID=cds.MS.gene41829.t1;Parent=MS.gene41829.t1 |
chr7.3 | exon | 21742894 | 21743117 | 21742894 | ID=MS.gene41829.t1.exon3;Parent=MS.gene41829.t1 |
chr7.3 | CDS | 21742894 | 21743117 | 21742894 | ID=cds.MS.gene41829.t1;Parent=MS.gene41829.t1 |
chr7.3 | exon | 21742622 | 21742731 | 21742622 | ID=MS.gene41829.t1.exon4;Parent=MS.gene41829.t1 |
chr7.3 | CDS | 21742622 | 21742731 | 21742622 | ID=cds.MS.gene41829.t1;Parent=MS.gene41829.t1 |
chr7.3 | exon | 21742050 | 21742107 | 21742050 | ID=MS.gene41829.t1.exon5;Parent=MS.gene41829.t1 |
chr7.3 | CDS | 21742050 | 21742107 | 21742050 | ID=cds.MS.gene41829.t1;Parent=MS.gene41829.t1 |
chr7.3 | exon | 21741663 | 21741926 | 21741663 | ID=MS.gene41829.t1.exon6;Parent=MS.gene41829.t1 |
chr7.3 | CDS | 21741663 | 21741926 | 21741663 | ID=cds.MS.gene41829.t1;Parent=MS.gene41829.t1 |
chr7.3 | exon | 21741392 | 21741529 | 21741392 | ID=MS.gene41829.t1.exon7;Parent=MS.gene41829.t1 |
chr7.3 | CDS | 21741392 | 21741529 | 21741392 | ID=cds.MS.gene41829.t1;Parent=MS.gene41829.t1 |
chr7.3 | exon | 21740851 | 21740902 | 21740851 | ID=MS.gene41829.t1.exon8;Parent=MS.gene41829.t1 |
chr7.3 | CDS | 21740851 | 21740902 | 21740851 | ID=cds.MS.gene41829.t1;Parent=MS.gene41829.t1 |
chr7.3 | exon | 21740679 | 21740728 | 21740679 | ID=MS.gene41829.t1.exon9;Parent=MS.gene41829.t1 |
chr7.3 | CDS | 21740679 | 21740728 | 21740679 | ID=cds.MS.gene41829.t1;Parent=MS.gene41829.t1 |
chr7.3 | exon | 21740327 | 21740386 | 21740327 | ID=MS.gene41829.t1.exon10;Parent=MS.gene41829.t1 |
chr7.3 | CDS | 21740327 | 21740386 | 21740327 | ID=cds.MS.gene41829.t1;Parent=MS.gene41829.t1 |
chr7.3 | exon | 21739892 | 21739972 | 21739892 | ID=MS.gene41829.t1.exon11;Parent=MS.gene41829.t1 |
chr7.3 | CDS | 21739892 | 21739972 | 21739892 | ID=cds.MS.gene41829.t1;Parent=MS.gene41829.t1 |
chr7.3 | exon | 21739441 | 21739485 | 21739441 | ID=MS.gene41829.t1.exon12;Parent=MS.gene41829.t1 |
chr7.3 | CDS | 21739441 | 21739485 | 21739441 | ID=cds.MS.gene41829.t1;Parent=MS.gene41829.t1 |
Gene Sequence |
Protein sequence |