AlfalfaGEDB | MS.gene058743

M. sativa cultivar XinJiangDaYe / MS.gene058743

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003676 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00270.32 PF00271.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058743.t1	XP_003628623.1	96.8	594	17	1	1	592	1	594	0.00E+00	1117.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058743.t1	Q944S1	58.2	517	201	5	66	575	58	566	3.2e-160	566.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058743.t1	G7LEQ4	96.8	594	17	1	1	592	1	594	0.0e+00	1117.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050642	MS.gene058743	0.801924	7.16E-49	-1.69E-46
MS.gene050812	MS.gene058743	0.803986	2.68E-49	-1.69E-46
MS.gene051171	MS.gene058743	0.805317	1.42E-49	-1.69E-46
MS.gene051242	MS.gene058743	0.815361	9.62E-52	-1.69E-46
MS.gene052600	MS.gene058743	0.806715	7.19E-50	-1.69E-46
MS.gene055971	MS.gene058743	0.80471	1.90E-49	-1.69E-46
MS.gene056633	MS.gene058743	0.806974	6.34E-50	-1.69E-46
MS.gene056664	MS.gene058743	0.80985	1.54E-50	-1.69E-46
MS.gene058276	MS.gene058743	0.827663	1.38E-54	-1.69E-46
MS.gene058743	MS.gene058746	0.8138	2.13E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058743.t1	MTR_8g062720	96.801	594	17	1	1	592	1	594	0.0	1188
MS.gene058743.t1	MTR_6g039840	31.472	197	110	6	89	276	110	290	1.14e-21	99.8
MS.gene058743.t1	MTR_6g039840	30.653	199	121	5	356	550	301	486	6.14e-17	85.1
MS.gene058743.t1	MTR_3g467550	29.808	208	138	4	345	550	286	487	1.89e-18	89.4
MS.gene058743.t1	MTR_3g467550	29.000	200	114	7	111	301	139	319	2.45e-12	70.1
MS.gene058743.t1	MTR_3g467550	29.808	208	138	4	345	550	255	456	2.19e-18	89.0
MS.gene058743.t1	MTR_3g467550	29.000	200	114	7	111	301	108	288	2.14e-12	70.1
MS.gene058743.t1	MTR_4g459350	32.308	195	111	7	87	274	39	219	2.46e-18	85.9
MS.gene058743.t1	MTR_1g054630	33.951	162	95	5	398	552	380	536	4.06e-18	88.6
MS.gene058743.t1	MTR_1g054630	27.320	194	119	6	89	274	154	333	4.78e-11	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058743.t1	AT1G59990	58.960	519	194	7	66	575	58	566	0.0	595
MS.gene058743.t1	AT1G59990	58.767	519	195	7	66	575	58	566	0.0	594
MS.gene058743.t1	AT4G34910	30.864	243	143	6	89	326	47	269	9.04e-21	97.1
MS.gene058743.t1	AT2G40700	35.385	195	105	9	87	274	29	209	5.21e-19	91.3
MS.gene058743.t1	AT4G09730	30.000	210	130	5	345	550	293	489	3.80e-18	88.6
MS.gene058743.t1	AT4G09730	30.000	190	118	6	89	274	113	291	4.71e-17	85.1
MS.gene058743.t1	AT5G63120	32.836	134	85	2	435	563	412	545	2.56e-16	82.8
MS.gene058743.t1	AT5G63120	26.425	193	125	4	102	291	179	357	1.57e-12	70.9
MS.gene058743.t1	AT5G08610	30.233	215	130	7	62	271	363	562	7.62e-16	81.6
MS.gene058743.t1	AT4G16630	30.374	214	114	9	74	273	148	340	1.05e-15	81.3

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Find 121 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGATTCCGATGTCAC+TGG	0.536633	3.1:+378499	None:intergenic
AAATCGGAAGATTTGGATAA+TGG	0.257182	3.1:-376965	MS.gene058743:CDS
AAATGTCTCTCATGTTATTC+AGG	0.347538	3.1:-376735	MS.gene058743:intron
AACATCCAAAGAATGTTCCT+CGG	0.612515	3.1:+379218	None:intergenic
AACGTTTCGTGGAGTTCAAT+TGG	0.403977	3.1:-380017	MS.gene058743:CDS
AAGAAGTCTCTCCGCCGGCC+AGG	0.524452	3.1:-379185	MS.gene058743:CDS
AAGAGAAGACGAAGATAAAG+TGG	0.425736	3.1:+380169	None:intergenic
AAGCACGAGCAGAACTCTCC+TGG	0.509002	3.1:+379167	None:intergenic
AAGCTGATATGCTTCTCTGT+GGG	0.625330	3.1:-378612	MS.gene058743:CDS
AATGGCTGCAGCACTAACAA+TGG	0.628494	3.1:+379074	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCGGAAGATTTGGATAA+TGG	-	chr3.1:377571-377590	MS.gene058743:intron	30.0%
AAATGTCTCTCATGTTATTC+AGG	-	chr3.1:377801-377820	MS.gene058743:intron	30.0%
AAGAGTCACAATGTCATATA+GGG	+	chr3.1:379128-379147	None:intergenic	30.0%
AATGAAGTGACTCAAATAAG+AGG	+	chr3.1:379105-379124	None:intergenic	30.0%
AATGTTTATCAGTGTTTCTC+TGG	-	chr3.1:378587-378606	MS.gene058743:CDS	30.0%
ACTTGTGTCAAGAATGAAAT+TGG	-	chr3.1:375052-375071	MS.gene058743:intron	30.0%
AGATAACCAAAAATAGCATC+AGG	+	chr3.1:375534-375553	None:intergenic	30.0%
ATAAAAATGCACAAATTCGG+AGG	+	chr3.1:378387-378406	None:intergenic	30.0%
ATTGAAGATCTTTGGTGAAA+AGG	+	chr3.1:378672-378691	None:intergenic	30.0%
CACTCAAATTCACTGTTTAA+CGG	-	chr3.1:377176-377195	MS.gene058743:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	374261	380297	374261	ID=MS.gene058743
chr3.1	mRNA	374261	380297	374261	ID=MS.gene058743.t1;Parent=MS.gene058743
chr3.1	exon	379953	380297	379953	ID=MS.gene058743.t1.exon1;Parent=MS.gene058743.t1
chr3.1	CDS	379953	380297	379953	ID=cds.MS.gene058743.t1;Parent=MS.gene058743.t1
chr3.1	exon	379062	379352	379062	ID=MS.gene058743.t1.exon2;Parent=MS.gene058743.t1
chr3.1	CDS	379062	379352	379062	ID=cds.MS.gene058743.t1;Parent=MS.gene058743.t1
chr3.1	exon	378761	378874	378761	ID=MS.gene058743.t1.exon3;Parent=MS.gene058743.t1
chr3.1	CDS	378761	378874	378761	ID=cds.MS.gene058743.t1;Parent=MS.gene058743.t1
chr3.1	exon	378205	378644	378205	ID=MS.gene058743.t1.exon4;Parent=MS.gene058743.t1
chr3.1	CDS	378205	378644	378205	ID=cds.MS.gene058743.t1;Parent=MS.gene058743.t1
chr3.1	exon	376736	377063	376736	ID=MS.gene058743.t1.exon5;Parent=MS.gene058743.t1
chr3.1	CDS	376736	377063	376736	ID=cds.MS.gene058743.t1;Parent=MS.gene058743.t1
chr3.1	exon	375072	375224	375072	ID=MS.gene058743.t1.exon6;Parent=MS.gene058743.t1
chr3.1	CDS	375072	375224	375072	ID=cds.MS.gene058743.t1;Parent=MS.gene058743.t1
chr3.1	exon	374782	374833	374782	ID=MS.gene058743.t1.exon7;Parent=MS.gene058743.t1
chr3.1	CDS	374782	374833	374782	ID=cds.MS.gene058743.t1;Parent=MS.gene058743.t1
chr3.1	exon	374261	374316	374261	ID=MS.gene058743.t1.exon8;Parent=MS.gene058743.t1
chr3.1	CDS	374261	374316	374261	ID=cds.MS.gene058743.t1;Parent=MS.gene058743.t1

Gene Sequence

>MS.gene058743

ATGAATGTTACTCGTTCTGCTCTGAAACTCCATTTTCAAAATTCACCGATTCGCTACCATCAATTTCTCTTCTTCTCTCGATTCAACAATGCTCTTATTCGCAATCCCACTTTATCTTCGTCTTCTCTTTTCAATTTCAATGCAACGCGTTTCTTTTCTCTAACCCTTCCACGTCAAACACAGCAGACACAGCCCTTTGTTGGAAGCGCCGTTTCATCAGAAGATTACAATGGAAGAGACACTTTCTTTGCTGAAGATAACGTTTCGTGGAGTTCAATTGGTCTTTCTCATACCCTTTCTCGAGCTCTCTCTAATATTGCTCTCAATACACCCTCTCTCGTTCAGGTCATTTCTCTCTCTTTTCACTATTCCTGCTATATTTCTGTTTTTTTATTTATTTTGTTTTAATTTTAATCAACCCTGTATGTTCTAAATTTGATTTTTTTTAACTAATTGAAAATGGTTTGAAGTGATTAATTAGCTTTAGTCAAGGTTGAATTGATCCGGAGAACCAATTTCGAACTTTGTTGGAACAACTTTACTCGGACTTTTTTTTATTGGTCCGTATGCTAGTGACAAATACCACTTGAAACTGATAACTACAATGTCTTAGTTCAAACCCAGGTAAAAGTGTCCAGCCTAGCAATATCAACATTCCCGAGCTAAGCATTACGGACTTCTTACTCAGACTTTACTTAGCAACAAAGTTATAGTTTTATTTTCCTTATTGTATTAATTTGCTTATGATGTCAATAAAATAAAATAAATCCAACCATCGTTTTAGAGTTGTGACTTGTGTCAAGAATGAAATTGGGTAAGTTTAGATTATAACTTGGAATAGAATCTGAGAAGTGATAAATGATTTTGTAATTTTTGTTTTTATTCTTCTATTCGGACTGCTGAGGCTTATTGATGATGACCATTTCTTCTTCTGTGTGTGTACAGGCTTCTTCTATACCATCTGTGTTGTCAGGGAAGGATGTAGTTATTGCTGCAGAGACCGGCAGTGGTAAGACATACAGTTATCTACTTCCTCTCATTGATAAGCTGAGGGGTACCGAGGAACATTCTTTGGATGTTGTATCTGATAAAGAAGTCTCTCCGCCGGCCAGGAGAGTTCTGCTCGTGCTTTGTCCGAATGTGCAATTGTGTGAGCAGGTAGTTAGGATGGCTAATAGTCTCTGTGGAGACAATGATGAAACCATTGTTAGTGCTGCAGCCATTTGTGGGAAACAGGTAGTGAGATGCTCTGCGTTTTTATCTCTTATTTCCTGATGCTATTTTTGGTTATCTTTGTGCATTTATAGTTATATGAAATTTGTGGTTTACTACACTATATGTCTGGTTGTTTGTACATGAAGTTTTAGCTATCTTCTCAAGTTTTCGCTCTGATTCTCAGCACTAAAAATCTTTTTTGGACCAGGGATGGCCAATTCGGGAACCTGATATCATTGTGACAACACCTGCTGCTCTTCTCAATCATGTTGACGTTGATAGAAGACGCCGCATGGAATTTATGCATGGTGTTAAATATGTGGTATCTTTCTTGTTTTATGATCTTATGTAGCTTTGTCGAACTAAAACTGAAGACATATGAACTTAACATTGGCTCCTATTTATGTATGTTTATATTTTCTAATTTCTAATTGGTAGGTGTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATTAACTTGCTCCGCTATGATGAAAAACTCTTGTCTCGATCGAAAACATCAGTATCAGAGTTGCCAGTGACATCGGAATCTTCTTTGTTGTCGCATGATGCTTCAGAAGGTGAAGAGGAATTTCCAATTGAAGCCATGTCAGACGAGGAGGATGATGATAACGAGGATATTGCCAATATTAATAACGAAGCTGAATCTGTCAAGAAAACAAGAAGAGACTGGAGAAGAGTGAGGAAATATTTTGAGCGAAGTAAACAATATGTTTTTGTTGCAGCTACACTTCCGGTGAATGGAAAGAAAACAGCGGGAGCATTATTGAAACACATGTTTCCTGATGCTGAGTGGGTTAGTGGAAACTATCTTCATTGTCACAATCCAAGGTGCTATATTTTCCCCCTTTTTGTACTTATTATCAATAAAACATTCAATTTTCTTTTCTACTTGGTATTCAACTTCTGTCGTGAAATTAGGAAAGTGGTCAGTGCATCAGTGGTCGTATATCTTTTTGGTGGCCATTGATTGTGCACTGTCAATAATGTGACAGGAATGTGTGCGGAGAAAATTAAGTCAAACATTACTAATTTACCAAGGTAAAAGATGGTAAGAACATTTTCAAAAACCAAGTTTAGAATTTATTGCCCATGAGAGACTTAGATGAATACCTAGGAAGTATGATCATAAGTGGAGACCTTAAGTTAGTCAAACAGATCCAGGTTTACTTAAATTGAAGAAAAGATCTTTGATGAAATTCGCAAAAACAGATAGATGAAATATGATTGTTTTTCAGTTTGAATGGTAAGATGAGATTATCTATACATATTGAAACAATTATAAATGATTTAATAAAATTATTTGAATTAATTACATTGTTTATTAATAAATGTAGTATAGTGACTTAAAAGTGACAAAGACAATATTAAATAAAGATTATAAAGTTAGAAAAACAAAATTAATACTTCATCTGTCTCAAAATAATAGGCGTTTAATGTTTATGATCGATTATAAAGTAAATGATTAATTGTGTTGATTTCATCGTGTGACATCTATAGTATGTCACTTTGTAACAAGGTGCATAAACAACATCTATAGTCCACCTTGAGTGTCGAGAGCTAACCATTATTAGCATACAATTAGTTTGCAACAGTCACTTGTGTATTCTTATACAAATACCACATAGGCAGTTCGAGGAACTTGTACTCTCCCACTCAAATTCACTGTTTAACGGCCACACTCTTTCTATTTTATTCTCCTATTACTGATAGTCTCCCTTCACCCTTCTAACTAACAACTACTAACAGACTATTACAGTTACAACATCCTTTACTAATTTCCTCTCACTCCTTATTCTTTTTCGGTTTCCTCTTTACATGTCTAATGGGAAGCATTATTCTACCATATATGCACAACATCTTTGACTTATGCTATTTTGTGATATCCAACCCATCCCGGCTCTACTGGAAAACAGTGTCTTCATTTATGCATTTGTGATTTCATTTGTTATTGTTTCTTTTCAATTTCCAGATTGAAGCAAAGATGGATAGAAGTGACCGTTGATACACAAGTGAAAGAGCTCATAAGGGCTGTGAATCACAGTTTAAAATCGGAAGATTTGGATAATGGTGGTGGCATTCATAGAACAATGGTGTTTGCCAACACAGTTGAGGCTGTTGAAGCTGTGGTGAAGATATTGGGCTATGCTGGGCTTGAATGTTTACGTTATCATAAGAATTGCACGTTGGATGAGCGGGCACAAACTTTAGTTGATTTCTACGACAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGCGTGGATATTCCAAATGTCTCTCATGTTATTCAGGTATGCTTTTCCTTTTACATGTTATAAGTTATAGGAATACTTTTTGCAATCGCTTAAATTTTGAAAGTTCTTGGGTTGAGAACAAACAGAAAAGGGAGGATTAAACATCAATTAGAATAAGTAAATATGTTGATGAGTTTAAAATATCAAAGTTTGTTCAGAAAATTAGAATGTTTGCGCATAAATATGACAGAATTGAAGTTCTATCCAATTAACACTACACCTTTTCTACTTGCGGACATTGATTGTGAAGATAAATAGTTTGTTGTTTCAATCAATTTCTCTTATTTATAAGCTTGCTCTCTCTTCACATCCCATATTTTTATAATTAAACTTATAGGAATTAGGAAAGCATCTCCTACATAGGGAATAGGGGAGTTATCCCGTGCACCATTTGCTCAGTGATGCATGTATACATTGGGTGTAAAATAGTAAATCTACCTCTCCACTAACTCCTTCCCCAGCTCTCCTCCTCCTCTCCATTCCCTTCACCACCCTCTGTCGTTTGTCAATCATTTAAGGACCCAGAAATAAAACTGCAAAATGCTTTTTAATTAAAATCCTCCGAATTTGTGCATTTTTATAGACAATTTTCTTTGTAATTGGATTCAATTAAAATAAGAACGGAGCCGTGAGCGAAAGAAGCAGGTTTCTATGGTTTTCATGATCAGAGCTAGTTGGTGCAGCACCTTTTTATTATTATTTAAAACAAAAGTAAAATTGTTTGTTGGGAGAATGAAGTGTGGGCGATTTATTTATGTCAAAATGTTTATCAGTGTTTCTCTGGATTTGTCTTTGTTCCCTAATCATTTCTCTTGATTTGTATTTGAAGACATGAGTCTCACCCCTTTTCACCAAAGATCTTCAATGCGATCTTTTACTTTCTCCTTTGCTTCTTCTAATAATTCTTCAGACGGTGAGTGTCCAGTGGAGAAGGGAAAGGAAATTGGGGAGTGGTGAATCTGTACGCATCATGCTTGTACAGAGGCGAGGCAGGGCAGCACGGATGGATGATTGAGGGGAGATGGAGTTGTGGTTGTGGGAGAGATGGGATAGAAGAAAACGAGTTGACCATTGTACCCTTAATTATAAACTCAATCCGGACCGTTGATTAATTACAAAATTTAAAAAGCACTTGCAAGGTCTTATATATCATGTTTAAGTAGCGTTTGGTAACTTTCACACGATGGTCTCTCTTTTGGAGTGTTTTTTCGTTTGTGTTTAAAGTTCAAACCTCAAATCATGTTATGTAATATACATTATTTCATGGTTTATTAAGCCTCTTATTTGAGTCACTTCATTCCCTATATGACATTGTGACTCTTAGTTCATTATATTACCATGCATGTATCCAACTCTTACTTTCATAGTCTGCTTCAGTGATGCTACTATTATGACCATGCTTTCAACTGTACTGTTTCTTATTGTGTTTGTTTTATTTTTATATAACCTTAGGTGTTATATTTTATTATATATATGTTTTCATTCTCAATGTTGTGCATGTGTTTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGATTGGTCGTACAGCTAGAGCTGGCCAAATCGGACTAGTTACCAGCATGTATACCGAATCCAACAGAGAGCTTGTAGATGCTGTTCGTCGTGCAGGGGAACTCGGTCTACCTGTGGTAAATTATAAAACTGTATTTATTGGCTGTAGTAATCTTGGACAGATCCATACACATTGAGATATTTGAATAAAATGTATCAAAAAATATTTATACATTGGGAAAATTAGATGCTGTTCGCGTATGATGAGAGCATTAACTATAGGCTGAATAACTTCTCACATAATTCCAACTATACAAGTCATTGATATTTGATAGATTCCAACATTTTGGAGTGATTGTTACACTATTAATGCAGGAGACCGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAGATAAAAAAGAAAGGTAAAGTTTAATGTTTGATTCCATAGAGCTTTAAAAATAAAAAAAAGATAACTAAAGTTTAATGTTTGATTCCATAGAGCTTTAAAAATCAATACTGTGCATAGATATCTATATTATGCATTGAGTTAAAAAGGTTAAGTGATGATGTTTATGTTTGTGTTCGAAATAGAAAATGCGGATCAGCATTTAAACTTCATACATTATCTTGATTTGTCACATGATTAGTTTTTTTTTTTATATTTTTTTTTTTACCTTGGAGGATCTCTAAGATTAGTTTTCATATTACTTCGGAGTCTTGTATCCTTATAAATAGGGGTTACTATTTAGTCTTTTTGTGTCATTCAATAAATAATTATATTCATATTTTAAAGTCTTTATTCTTTATCTCAGCTCTTTTTCTAAAACCTTGTAACTTCGACAACGATAAGCTTGACCTAACCAGTAACCATCATTTTGTATTTGTAGCAAGTGCTAACAAAGTCAGAGATTCAGCAACCATTGAAGAGAATCTTACAGCGTGA

Protein sequence

>MS.gene058743.t1

MNVTRSALKLHFQNSPIRYHQFLFFSRFNNALIRNPTLSSSSLFNFNATRFFSLTLPRQTQQTQPFVGSAVSSEDYNGRDTFFAEDNVSWSSIGLSHTLSRALSNIALNTPSLVQASSIPSVLSGKDVVIAAETGSGKTYSYLLPLIDKLRGTEEHSLDVVSDKEVSPPARRVLLVLCPNVQLCEQVVRMANSLCGDNDETIVSAAAICGKQGWPIREPDIIVTTPAALLNHVDVDRRRRMEFMHGVKYVVFDEADMLLCGSFQNKVIRLINLLRYDEKLLSRSKTSVSELPVTSESSLLSHDASEGEEEFPIEAMSDEEDDDNEDIANINNEAESVKKTRRDWRRVRKYFERSKQYVFVAATLPVNGKKTAGALLKHMFPDAEWVSGNYLHCHNPRLKQRWIEVTVDTQVKELIRAVNHSLKSEDLDNGGGIHRTMVFANTVEAVEAVVKILGYAGLECLRYHKNCTLDERAQTLVDFYDKGGVLVCTDAAARGVDIPNVSHVIQADFATSAVDFLHRIGRTARAGQIGLVTSMYTESNRELVDAVRRAGELGLPVETAFSRKRSFRNKIKKKASANKVRDSATIEENLTA