Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42573.t1 | ABD33321.1 | 56.4 | 188 | 26 | 3 | 79 | 210 | 233 | 420 | 1.10E-37 | 166.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42573.t1 | Q2HRF2 | 56.4 | 188 | 26 | 3 | 79 | 210 | 233 | 420 | 8.0e-38 | 166.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049587 | MS.gene42573 | 0.809002 | 2.35E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene42573 | 0.836767 | 7.71E-57 | -1.69E-46 |
| MS.gene054174 | MS.gene42573 | 0.852262 | 5.18E-61 | -1.69E-46 |
| MS.gene054175 | MS.gene42573 | 0.854149 | 1.49E-61 | -1.69E-46 |
| MS.gene054484 | MS.gene42573 | 0.845827 | 3.19E-59 | -1.69E-46 |
| MS.gene055952 | MS.gene42573 | 0.814525 | 1.47E-51 | -1.69E-46 |
| MS.gene058515 | MS.gene42573 | 0.810705 | 1.01E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42573.t1 | MTR_7g090750 | 54.737 | 190 | 28 | 4 | 79 | 210 | 233 | 422 | 7.87e-50 | 167 |
| MS.gene42573.t1 | MTR_5g038430 | 36.464 | 181 | 65 | 4 | 79 | 210 | 316 | 495 | 5.70e-18 | 82.0 |
| MS.gene42573.t1 | MTR_0227s0010 | 41.353 | 133 | 64 | 4 | 79 | 205 | 214 | 338 | 4.73e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTACTAAGGGCAACATATT+TGG | 0.213138 | 7.1:+16530843 | MS.gene42573:CDS |
| TCACCATCTGCAGATTATTA+AGG | 0.301307 | 7.1:-16531533 | None:intergenic |
| CTTGTGCTTGTAGTTCTCTT+AGG | 0.308244 | 7.1:+16530082 | MS.gene42573:intron |
| GCTTCAACTCCCGACTGTTT+CGG | 0.381297 | 7.1:+16528363 | MS.gene42573:CDS |
| GAATTTCACAAGACTTGTTA+AGG | 0.402516 | 7.1:+16531676 | MS.gene42573:CDS |
| TAAGGGCAACATATTTGGTT+TGG | 0.409351 | 7.1:+16530848 | MS.gene42573:CDS |
| CTTGTGAACTTCTTTGAAGT+AGG | 0.459796 | 7.1:-16531654 | None:intergenic |
| GCTTGAAACAACTTCAATGA+TGG | 0.488895 | 7.1:+16529095 | MS.gene42573:CDS |
| TTCACAAGACTTGTTAAGGA+TGG | 0.489742 | 7.1:+16531680 | MS.gene42573:CDS |
| TCTTACACTCAAAGCTACTA+AGG | 0.490962 | 7.1:+16530830 | MS.gene42573:CDS |
| CTTCAATGATGGTGCAAACA+AGG | 0.505203 | 7.1:+16529106 | MS.gene42573:CDS |
| TCCACGACTCGGTATTTACA+AGG | 0.525137 | 7.1:+16530911 | MS.gene42573:CDS |
| TAGTAGCTGCCGAAACAGTC+GGG | 0.529088 | 7.1:-16528372 | None:intergenic |
| GTGAATATCCATGTTAGAGC+TGG | 0.536122 | 7.1:+16531552 | MS.gene42573:CDS |
| GTAGTAGCTGCCGAAACAGT+CGG | 0.557200 | 7.1:-16528373 | None:intergenic |
| AGCATGCAATGAGTTTGATA+CGG | 0.566412 | 7.1:+16531580 | MS.gene42573:CDS |
| GCTGAGAACCAGCTCTAACA+TGG | 0.567085 | 7.1:-16531560 | None:intergenic |
| ACATCGATATTCACCATGGA+AGG | 0.580327 | 7.1:-16531734 | None:intergenic |
| ATGCCGTCAGTGACATTGCA+TGG | 0.585348 | 7.1:-16530168 | None:intergenic |
| ACCTTGTAAATACCGAGTCG+TGG | 0.590843 | 7.1:-16530912 | None:intergenic |
| CTTACACTCAAAGCTACTAA+GGG | 0.591970 | 7.1:+16530831 | MS.gene42573:CDS |
| CACATGTTGAGTTCCTTCCA+TGG | 0.592030 | 7.1:+16531721 | MS.gene42573:CDS |
| GTCAAGATGATGATACTGAT+CGG | 0.604281 | 7.1:+16530133 | MS.gene42573:CDS |
| TTGCCTTAATAATCTGCAGA+TGG | 0.608944 | 7.1:+16531530 | MS.gene42573:CDS |
| TTACCATGCAATGTCACTGA+CGG | 0.623357 | 7.1:+16530165 | MS.gene42573:CDS |
| GCAGCTACTACTGCTGCAGA+TGG | 0.630941 | 7.1:+16528385 | MS.gene42573:CDS |
| AAGATGTAATTCATTATCAG+TGG | 0.632504 | 7.1:-16529070 | None:intergenic |
| AGAAGTGTCAGATCATTCAG+AGG | 0.643693 | 7.1:+16531488 | MS.gene42573:CDS |
| ACACTTGAAAATCAAAGACC+TGG | 0.656744 | 7.1:+16530197 | MS.gene42573:CDS |
| TCTAACATCGATATTCACCA+TGG | 0.736861 | 7.1:-16531738 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACTTTCTACATAAATAT+TGG | - | chr7.1:16531142-16531161 | None:intergenic | 15.0% |
| !!! | ATATGAAGATTTTTAAGTAA+CGG | - | chr7.1:16530690-16530709 | None:intergenic | 15.0% |
| !!! | ATATTCATCAAAAAAAGTAT+TGG | - | chr7.1:16530296-16530315 | None:intergenic | 15.0% |
| !!! | ATGTTTATTATTTTTCAGTT+GGG | + | chr7.1:16530962-16530981 | MS.gene42573:intron | 15.0% |
| !!! | TAATTTGAAATAGTTGTAAA+AGG | + | chr7.1:16529448-16529467 | MS.gene42573:intron | 15.0% |
| !!! | TATGTTTATTATTTTTCAGT+TGG | + | chr7.1:16530961-16530980 | MS.gene42573:intron | 15.0% |
| !! | CTTATATTTCTTAATTCTAC+AGG | + | chr7.1:16528994-16529013 | MS.gene42573:intron | 20.0% |
| !! | TCTGAGTTTATTATATTACT+GGG | + | chr7.1:16528759-16528778 | MS.gene42573:intron | 20.0% |
| !! | TTCTGAGTTTATTATATTAC+TGG | + | chr7.1:16528758-16528777 | MS.gene42573:intron | 20.0% |
| !! | TTTCTACATAAATATTGGAT+TGG | - | chr7.1:16531137-16531156 | None:intergenic | 20.0% |
| !!! | CAATTTTGAATTTTGATTGA+TGG | + | chr7.1:16531110-16531129 | MS.gene42573:intron | 20.0% |
| !!! | TACTTTTTTTGATGAATATG+AGG | + | chr7.1:16530297-16530316 | MS.gene42573:intron | 20.0% |
| !!! | TATGAAGATTTTTAAGTAAC+GGG | - | chr7.1:16530689-16530708 | None:intergenic | 20.0% |
| !!! | TTTTATATTGCTGTCAATAA+TGG | + | chr7.1:16528533-16528552 | MS.gene42573:intron | 20.0% |
| ! | AAAAGACCAAACTTATCTAT+CGG | - | chr7.1:16530382-16530401 | None:intergenic | 25.0% |
| ! | AAGATGTAATTCATTATCAG+TGG | - | chr7.1:16529073-16529092 | None:intergenic | 25.0% |
| ! | ATTCTACAGCAATAAAATTG+AGG | - | chr7.1:16529597-16529616 | None:intergenic | 25.0% |
| ! | ATTTCTTAATTCTACAGGTT+TGG | + | chr7.1:16528999-16529018 | MS.gene42573:intron | 25.0% |
| ! | CTGAGTTTATTATATTACTG+GGG | + | chr7.1:16528760-16528779 | MS.gene42573:intron | 25.0% |
| ! | GTTTGTGTATTTATTTGTTC+AGG | + | chr7.1:16529487-16529506 | MS.gene42573:intron | 25.0% |
| ! | TGTATTTATTTGTTCAGGAT+TGG | + | chr7.1:16529492-16529511 | MS.gene42573:intron | 25.0% |
| !! | AACATTCAAAGGTTTTCTAT+CGG | + | chr7.1:16530888-16530907 | MS.gene42573:CDS | 25.0% |
| !! | GTGATAATTTTATAAGCTAC+TGG | - | chr7.1:16530334-16530353 | None:intergenic | 25.0% |
| !!! | AAGACTCTTACTTTTAAAGT+TGG | + | chr7.1:16531630-16531649 | MS.gene42573:CDS | 25.0% |
| !!! | AGAAAATATGTGATTTGCTA+AGG | - | chr7.1:16529870-16529889 | None:intergenic | 25.0% |
| !!! | ATATTTTTGGACAATTACTG+GGG | + | chr7.1:16528556-16528575 | MS.gene42573:intron | 25.0% |
| !!! | CTGTCAATAATGGATATTTT+TGG | + | chr7.1:16528543-16528562 | MS.gene42573:intron | 25.0% |
| !!! | GAAAACCTTTGAATGTTTTT+TGG | - | chr7.1:16530885-16530904 | None:intergenic | 25.0% |
| !!! | GATATTTTTGGACAATTACT+GGG | + | chr7.1:16528555-16528574 | MS.gene42573:intron | 25.0% |
| !!! | TGGTTAGAGTTTTTAGATAA+GGG | + | chr7.1:16529215-16529234 | MS.gene42573:intron | 25.0% |
| !!! | TTTTTTAATCTTACGAATGC+AGG | - | chr7.1:16528731-16528750 | None:intergenic | 25.0% |
| AAGTCATAGTTATGTTGCTA+CGG | + | chr7.1:16529637-16529656 | MS.gene42573:intron | 30.0% | |
| AGAAATAAGCTAAGAAGCTT+AGG | - | chr7.1:16531407-16531426 | None:intergenic | 30.0% | |
| ATATATTGTCCTCTCTTGTA+AGG | + | chr7.1:16530528-16530547 | MS.gene42573:intron | 30.0% | |
| ATCTTGAATTTGTAGTCATG+AGG | - | chr7.1:16530409-16530428 | None:intergenic | 30.0% | |
| ATTGATAAGACTTCAAGAGT+AGG | - | chr7.1:16530753-16530772 | None:intergenic | 30.0% | |
| ATTTAGCTAGAGATAAGCTA+CGG | - | chr7.1:16529806-16529825 | None:intergenic | 30.0% | |
| CTACGGAATAACTATTGAAT+CGG | - | chr7.1:16529789-16529808 | None:intergenic | 30.0% | |
| CTTGAGTTATTACATTGCTT+GGG | + | chr7.1:16528689-16528708 | MS.gene42573:intron | 30.0% | |
| GTTTGCCAAAAAACATTCAA+AGG | + | chr7.1:16530877-16530896 | MS.gene42573:CDS | 30.0% | |
| TAGCTTATCTCTAGCTAAAT+GGG | + | chr7.1:16529806-16529825 | MS.gene42573:intron | 30.0% | |
| TCTAAAAACTCTAACCACAT+TGG | - | chr7.1:16529212-16529231 | None:intergenic | 30.0% | |
| TCTTGAGTTATTACATTGCT+TGG | + | chr7.1:16528688-16528707 | MS.gene42573:intron | 30.0% | |
| TTACAAGAGAGGACAATATA+TGG | - | chr7.1:16530529-16530548 | None:intergenic | 30.0% | |
| TTCTATCTCACATGTTAGTT+TGG | + | chr7.1:16530990-16531009 | MS.gene42573:intron | 30.0% | |
| TTGTAGTTTCGACAATATCA+AGG | + | chr7.1:16528845-16528864 | MS.gene42573:intron | 30.0% | |
| TTTGATGAATATGAGGATCT+CGG | + | chr7.1:16530304-16530323 | MS.gene42573:intron | 30.0% | |
| ! | CTTTTAAATCCACAGAAATC+AGG | - | chr7.1:16530597-16530616 | None:intergenic | 30.0% |
| ! | TCCATAAAGCATCTGAAATT+GGG | + | chr7.1:16531276-16531295 | MS.gene42573:intron | 30.0% |
| ! | TGAGACTATTTTCAACAAGA+GGG | + | chr7.1:16530107-16530126 | MS.gene42573:CDS | 30.0% |
| ! | TTTGATTGAGATGTGTTTTG+TGG | - | chr7.1:16530504-16530523 | None:intergenic | 30.0% |
| ! | TTTTACAATTCAGAGTTACG+TGG | + | chr7.1:16531452-16531471 | MS.gene42573:intron | 30.0% |
| !! | ATTGAGAGACAAATTTGCTA+GGG | - | chr7.1:16529755-16529774 | None:intergenic | 30.0% |
| !! | GAATTTCACAAGACTTGTTA+AGG | + | chr7.1:16531676-16531695 | MS.gene42573:CDS | 30.0% |
| !! | GGACTAGTATTTTGTCTAAA+CGG | + | chr7.1:16530223-16530242 | MS.gene42573:intron | 30.0% |
| !! | GGTTAGAGTTTTTAGATAAG+GGG | + | chr7.1:16529216-16529235 | MS.gene42573:intron | 30.0% |
| !! | GTGGTTAGAGTTTTTAGATA+AGG | + | chr7.1:16529214-16529233 | MS.gene42573:intron | 30.0% |
| !! | TATTTGTTCAGGATTGGTTA+TGG | + | chr7.1:16529498-16529517 | MS.gene42573:intron | 30.0% |
| !!! | GATTTTAGTTTTACCTGCTA+CGG | + | chr7.1:16529711-16529730 | MS.gene42573:intron | 30.0% |
| !!! | GGATATTTTTGGACAATTAC+TGG | + | chr7.1:16528554-16528573 | MS.gene42573:intron | 30.0% |
| AACTGTCTTTAGTGTTAGAG+TGG | + | chr7.1:16528465-16528484 | MS.gene42573:intron | 35.0% | |
| AAGTCAATTCCTTACAAGAG+AGG | - | chr7.1:16530540-16530559 | None:intergenic | 35.0% | |
| AAGTTACCTTAAAACGCATC+AGG | - | chr7.1:16529156-16529175 | None:intergenic | 35.0% | |
| ACAAAATACTAGTCCTAACC+AGG | - | chr7.1:16530218-16530237 | None:intergenic | 35.0% | |
| ACACTTGAAAATCAAAGACC+TGG | + | chr7.1:16530197-16530216 | MS.gene42573:CDS | 35.0% | |
| ACCCAATTTCAGATGCTTTA+TGG | - | chr7.1:16531280-16531299 | None:intergenic | 35.0% | |
| AGCATGCAATGAGTTTGATA+CGG | + | chr7.1:16531580-16531599 | MS.gene42573:CDS | 35.0% | |
| AGTCTCAAGATATTCTTCGT+TGG | - | chr7.1:16529248-16529267 | None:intergenic | 35.0% | |
| ATCTACAGATTTAAGAGCCA+AGG | - | chr7.1:16529930-16529949 | None:intergenic | 35.0% | |
| ATCTTGAGACTAAGGTCAAT+GGG | + | chr7.1:16529257-16529276 | MS.gene42573:intron | 35.0% | |
| ATGTTCTAGTGCAACACAAA+GGG | + | chr7.1:16530356-16530375 | MS.gene42573:intron | 35.0% | |
| CGAAGAATATCTTGAGACTA+AGG | + | chr7.1:16529249-16529268 | MS.gene42573:intron | 35.0% | |
| CTGCAGTGTATCTACAAAAT+TGG | + | chr7.1:16529844-16529863 | MS.gene42573:intron | 35.0% | |
| CTTACACTCAAAGCTACTAA+GGG | + | chr7.1:16530831-16530850 | MS.gene42573:CDS | 35.0% | |
| GAGGAATGATATTTGCATAC+TGG | - | chr7.1:16531230-16531249 | None:intergenic | 35.0% | |
| GATTTCGTGTTTGTCAAAGA+GGG | + | chr7.1:16530453-16530472 | MS.gene42573:intron | 35.0% | |
| GCTTGAAACAACTTCAATGA+TGG | + | chr7.1:16529095-16529114 | MS.gene42573:CDS | 35.0% | |
| GGTGTGAATTTCAATGATAG+AGG | + | chr7.1:16531300-16531319 | MS.gene42573:intron | 35.0% | |
| GTAGCTTATCTCTAGCTAAA+TGG | + | chr7.1:16529805-16529824 | MS.gene42573:intron | 35.0% | |
| GTCAAGATGATGATACTGAT+CGG | + | chr7.1:16530133-16530152 | MS.gene42573:CDS | 35.0% | |
| TAAGGGCAACATATTTGGTT+TGG | + | chr7.1:16530848-16530867 | MS.gene42573:CDS | 35.0% | |
| TACCTGCTACGGATTTAATA+GGG | + | chr7.1:16529722-16529741 | MS.gene42573:intron | 35.0% | |
| TAGAAGTTCGAAGATCAAAG+TGG | - | chr7.1:16529962-16529981 | None:intergenic | 35.0% | |
| TAGTTTCGACAATATCAAGG+CGG | + | chr7.1:16528848-16528867 | MS.gene42573:intron | 35.0% | |
| TATCTTGAGACTAAGGTCAA+TGG | + | chr7.1:16529256-16529275 | MS.gene42573:intron | 35.0% | |
| TCACCATCTGCAGATTATTA+AGG | - | chr7.1:16531536-16531555 | None:intergenic | 35.0% | |
| TCTTACACTCAAAGCTACTA+AGG | + | chr7.1:16530830-16530849 | MS.gene42573:CDS | 35.0% | |
| TGAAAATCAAAGACCTGGTT+AGG | + | chr7.1:16530202-16530221 | MS.gene42573:intron | 35.0% | |
| TTAAATCCACAGAAATCAGG+TGG | - | chr7.1:16530594-16530613 | None:intergenic | 35.0% | |
| TTACCTGCTACGGATTTAAT+AGG | + | chr7.1:16529721-16529740 | MS.gene42573:intron | 35.0% | |
| TTGATGCTATGGTCAAATTC+TGG | + | chr7.1:16529281-16529300 | MS.gene42573:intron | 35.0% | |
| TTGCCTTAATAATCTGCAGA+TGG | + | chr7.1:16531530-16531549 | MS.gene42573:CDS | 35.0% | |
| ! | AAACTCTAACCACATTGGTT+AGG | - | chr7.1:16529207-16529226 | None:intergenic | 35.0% |
| ! | ATAAAGCATCTGAAATTGGG+TGG | + | chr7.1:16531279-16531298 | MS.gene42573:intron | 35.0% |
| ! | CTAGTATTTTGTCTAAACGG+TGG | + | chr7.1:16530226-16530245 | MS.gene42573:intron | 35.0% |
| ! | CTCCATAAAGCATCTGAAAT+TGG | + | chr7.1:16531275-16531294 | MS.gene42573:intron | 35.0% |
| ! | CTGAGACTATTTTCAACAAG+AGG | + | chr7.1:16530106-16530125 | MS.gene42573:CDS | 35.0% |
| ! | GATTGAGAGACAAATTTGCT+AGG | - | chr7.1:16529756-16529775 | None:intergenic | 35.0% |
| ! | TTATTGCCTGATGCGTTTTA+AGG | + | chr7.1:16529147-16529166 | MS.gene42573:intron | 35.0% |
| ! | TTGAGGCCTAAATTTTCACT+CGG | - | chr7.1:16528903-16528922 | None:intergenic | 35.0% |
| ! | TTGTTTGTTAGATTCAAGCC+TGG | + | chr7.1:16530636-16530655 | MS.gene42573:intron | 35.0% |
| !! | CTTGTGAACTTCTTTGAAGT+AGG | - | chr7.1:16531657-16531676 | None:intergenic | 35.0% |
| !! | TGACTCTTCTGAAATTTCCT+TGG | + | chr7.1:16529910-16529929 | MS.gene42573:intron | 35.0% |
| !! | TTCACAAGACTTGTTAAGGA+TGG | + | chr7.1:16531680-16531699 | MS.gene42573:CDS | 35.0% |
| !!! | ATCATGTTCGTCTGTTTTTG+AGG | + | chr7.1:16528431-16528450 | MS.gene42573:intron | 35.0% |
| AAAGGGCCGATAGATAAGTT+TGG | + | chr7.1:16530373-16530392 | MS.gene42573:intron | 40.0% | |
| AACACGAAATCCATGTATCG+AGG | - | chr7.1:16530444-16530463 | None:intergenic | 40.0% | |
| ATAAGACTCTTGTGTGAACC+AGG | - | chr7.1:16530657-16530676 | None:intergenic | 40.0% | |
| ATCCCTATTAAATCCGTAGC+AGG | - | chr7.1:16529727-16529746 | None:intergenic | 40.0% | |
| ATTGGTCAAACCAAAGTCGT+GGG | - | chr7.1:16530278-16530297 | None:intergenic | 40.0% | |
| CAATTGAACACCTCGATACA+TGG | + | chr7.1:16530431-16530450 | MS.gene42573:intron | 40.0% | |
| CAGTAAAGTGAGAGAGACAA+AGG | - | chr7.1:16529408-16529427 | None:intergenic | 40.0% | |
| CTAATGACAATGTCTTCTCG+AGG | + | chr7.1:16529328-16529347 | MS.gene42573:intron | 40.0% | |
| CTTGTGCTTGTAGTTCTCTT+AGG | + | chr7.1:16530082-16530101 | MS.gene42573:intron | 40.0% | |
| GATGTTCTAGTGCAACACAA+AGG | + | chr7.1:16530355-16530374 | MS.gene42573:intron | 40.0% | |
| GCTACTAAGGGCAACATATT+TGG | + | chr7.1:16530843-16530862 | MS.gene42573:CDS | 40.0% | |
| GGATTTCGTGTTTGTCAAAG+AGG | + | chr7.1:16530452-16530471 | MS.gene42573:intron | 40.0% | |
| GTGAATATCCATGTTAGAGC+TGG | + | chr7.1:16531552-16531571 | MS.gene42573:CDS | 40.0% | |
| TAGAGGCCGAGTGAAAATTT+AGG | + | chr7.1:16528894-16528913 | MS.gene42573:intron | 40.0% | |
| TATTGGTCAAACCAAAGTCG+TGG | - | chr7.1:16530279-16530298 | None:intergenic | 40.0% | |
| TCAATTCCACCTGATTTCTG+TGG | + | chr7.1:16530585-16530604 | MS.gene42573:intron | 40.0% | |
| TTACCATGCAATGTCACTGA+CGG | + | chr7.1:16530165-16530184 | MS.gene42573:CDS | 40.0% | |
| TTCTACAGGTTTGGACTGAA+TGG | + | chr7.1:16529008-16529027 | MS.gene42573:intron | 40.0% | |
| ! | CTTCAATGATGGTGCAAACA+AGG | + | chr7.1:16529106-16529125 | MS.gene42573:CDS | 40.0% |
| ! | GTATTTTGTCTAAACGGTGG+AGG | + | chr7.1:16530229-16530248 | MS.gene42573:intron | 40.0% |
| !! | AGAAGTGTCAGATCATTCAG+AGG | + | chr7.1:16531488-16531507 | MS.gene42573:CDS | 40.0% |
| !! | GTTCAGGATTGGTTATGGAT+AGG | + | chr7.1:16529503-16529522 | MS.gene42573:intron | 40.0% |
| ACCTTGTAAATACCGAGTCG+TGG | - | chr7.1:16530915-16530934 | None:intergenic | 45.0% | |
| ATGGTGCAAACAAGGTGTGA+TGG | + | chr7.1:16529114-16529133 | MS.gene42573:intron | 45.0% | |
| ATTCCTCCCACACTGCTAAA+AGG | + | chr7.1:16531243-16531262 | MS.gene42573:intron | 45.0% | |
| CACATGTTGAGTTCCTTCCA+TGG | + | chr7.1:16531721-16531740 | MS.gene42573:CDS | 45.0% | |
| CCTATCTGTATGAGTCGTTG+AGG | - | chr7.1:16528920-16528939 | None:intergenic | 45.0% | |
| CCTCAACGACTCATACAGAT+AGG | + | chr7.1:16528917-16528936 | MS.gene42573:intron | 45.0% | |
| CTATTGAATCGGCTGTAGCA+TGG | - | chr7.1:16529778-16529797 | None:intergenic | 45.0% | |
| CTTGGCTGAACTTGTCATAC+AGG | + | chr7.1:16531365-16531384 | MS.gene42573:intron | 45.0% | |
| GAGAGAGACAAAGGTTACAG+AGG | - | chr7.1:16529399-16529418 | None:intergenic | 45.0% | |
| GGTCAATGGGATTGATGCTA+TGG | + | chr7.1:16529270-16529289 | MS.gene42573:intron | 45.0% | |
| GTGTAAGGCTACGTTCATAG+AGG | + | chr7.1:16528877-16528896 | MS.gene42573:intron | 45.0% | |
| TAGGCTCTGCAAACAAGTTC+AGG | - | chr7.1:16529188-16529207 | None:intergenic | 45.0% | |
| TTTGCAGAGCCTAACCAATG+TGG | + | chr7.1:16529195-16529214 | MS.gene42573:intron | 45.0% | |
| ! | AACGAGCCTTTTAGCAGTGT+GGG | - | chr7.1:16531252-16531271 | None:intergenic | 45.0% |
| ! | CTAAACGGTGGAGGTATATG+TGG | + | chr7.1:16530238-16530257 | MS.gene42573:intron | 45.0% |
| ! | TTTTCTATCGGTCCACGACT+CGG | + | chr7.1:16530900-16530919 | MS.gene42573:CDS | 45.0% |
| !! | ATTACTGGGGCAGCTTTAGA+TGG | + | chr7.1:16528569-16528588 | MS.gene42573:intron | 45.0% |
| !! | TCCACGACTCGGTATTTACA+AGG | + | chr7.1:16530911-16530930 | MS.gene42573:CDS | 45.0% |
| ACTCCAATGTGCTCTTGGCT+TGG | + | chr7.1:16531347-16531366 | MS.gene42573:intron | 50.0% | |
| AGTCCACTCCAATGTGCTCT+TGG | + | chr7.1:16531342-16531361 | MS.gene42573:intron | 50.0% | |
| ATGCCGTCAGTGACATTGCA+TGG | - | chr7.1:16530171-16530190 | None:intergenic | 50.0% | |
| ATGTTCCACACCCACGACTT+TGG | + | chr7.1:16530265-16530284 | MS.gene42573:intron | 50.0% | |
| GCTTCAACTCCCGACTGTTT+CGG | + | chr7.1:16528363-16528382 | MS.gene42573:CDS | 50.0% | |
| GTAGTAGCTGCCGAAACAGT+CGG | - | chr7.1:16528376-16528395 | None:intergenic | 50.0% | |
| GTGCAAACAAGGTGTGATGG+AGG | + | chr7.1:16529117-16529136 | MS.gene42573:intron | 50.0% | |
| TAGTAGCTGCCGAAACAGTC+GGG | - | chr7.1:16528375-16528394 | None:intergenic | 50.0% | |
| TCAAACCAAAGTCGTGGGTG+TGG | - | chr7.1:16530273-16530292 | None:intergenic | 50.0% | |
| TCAAGGCGGAACTGAGTGTA+AGG | + | chr7.1:16528862-16528881 | MS.gene42573:intron | 50.0% | |
| ! | AAGCCAAGAGCACATTGGAG+TGG | - | chr7.1:16531348-16531367 | None:intergenic | 50.0% |
| ! | GAACGAGCCTTTTAGCAGTG+TGG | - | chr7.1:16531253-16531272 | None:intergenic | 50.0% |
| ! | GCTGAGAACCAGCTCTAACA+TGG | - | chr7.1:16531563-16531582 | None:intergenic | 50.0% |
| GCAGCTACTACTGCTGCAGA+TGG | + | chr7.1:16528385-16528404 | MS.gene42573:CDS | 55.0% | |
| ! | CAGCCAAGCCAAGAGCACAT+TGG | - | chr7.1:16531353-16531372 | None:intergenic | 55.0% |
| ! | GAGCCTTTTAGCAGTGTGGG+AGG | - | chr7.1:16531249-16531268 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 16528361 | 16531746 | 16528361 | ID=MS.gene42573 |
| chr7.1 | mRNA | 16528361 | 16531746 | 16528361 | ID=MS.gene42573.t1;Parent=MS.gene42573 |
| chr7.1 | exon | 16528361 | 16528406 | 16528361 | ID=MS.gene42573.t1.exon1;Parent=MS.gene42573.t1 |
| chr7.1 | CDS | 16528361 | 16528406 | 16528361 | ID=cds.MS.gene42573.t1;Parent=MS.gene42573.t1 |
| chr7.1 | exon | 16529064 | 16529127 | 16529064 | ID=MS.gene42573.t1.exon2;Parent=MS.gene42573.t1 |
| chr7.1 | CDS | 16529064 | 16529127 | 16529064 | ID=cds.MS.gene42573.t1;Parent=MS.gene42573.t1 |
| chr7.1 | exon | 16530095 | 16530218 | 16530095 | ID=MS.gene42573.t1.exon3;Parent=MS.gene42573.t1 |
| chr7.1 | CDS | 16530095 | 16530218 | 16530095 | ID=cds.MS.gene42573.t1;Parent=MS.gene42573.t1 |
| chr7.1 | exon | 16530810 | 16530932 | 16530810 | ID=MS.gene42573.t1.exon4;Parent=MS.gene42573.t1 |
| chr7.1 | CDS | 16530810 | 16530932 | 16530810 | ID=cds.MS.gene42573.t1;Parent=MS.gene42573.t1 |
| chr7.1 | exon | 16531465 | 16531746 | 16531465 | ID=MS.gene42573.t1.exon5;Parent=MS.gene42573.t1 |
| chr7.1 | CDS | 16531465 | 16531746 | 16531465 | ID=cds.MS.gene42573.t1;Parent=MS.gene42573.t1 |
| Gene Sequence |
| Protein sequence |
