Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42767.t1 | XP_013445314.1 | 98.6 | 296 | 4 | 0 | 1 | 296 | 1 | 296 | 6.00E-167 | 596.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42767.t1 | Q9QWZ1 | 26.7 | 303 | 181 | 12 | 1 | 293 | 4 | 275 | 2.5e-20 | 100.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42767.t1 | A0A072U0N1 | 98.6 | 296 | 4 | 0 | 1 | 296 | 1 | 296 | 4.4e-167 | 596.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051245 | MS.gene42767 | 0.801691 | 7.99E-49 | -1.69E-46 |
MS.gene052242 | MS.gene42767 | -0.803192 | 3.92E-49 | -1.69E-46 |
MS.gene054699 | MS.gene42767 | 0.801395 | 9.19E-49 | -1.69E-46 |
MS.gene057057 | MS.gene42767 | 0.802035 | 6.79E-49 | -1.69E-46 |
MS.gene057452 | MS.gene42767 | -0.816856 | 4.46E-52 | -1.69E-46 |
MS.gene057576 | MS.gene42767 | 0.801334 | 9.46E-49 | -1.69E-46 |
MS.gene05781 | MS.gene42767 | 0.803363 | 3.61E-49 | -1.69E-46 |
MS.gene058639 | MS.gene42767 | 0.807131 | 5.87E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42767.t1 | MTR_8g447310 | 98.649 | 296 | 4 | 0 | 1 | 296 | 1 | 296 | 0.0 | 610 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42767.t1 | AT4G17760 | 71.331 | 293 | 83 | 1 | 4 | 296 | 9 | 300 | 1.83e-164 | 459 |
MS.gene42767.t1 | AT4G17760 | 69.892 | 186 | 55 | 1 | 111 | 296 | 1 | 185 | 4.78e-95 | 278 |
Find 68 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGTCCCATGCAACGGTTTC+AGG | 0.162062 | 8.2:-55135710 | None:intergenic |
CCCTTTGACCTTTACTGTTC+AGG | 0.268886 | 8.2:+55135757 | MS.gene42767:CDS |
TCTGATCTCTGCACAAATAC+TGG | 0.365082 | 8.2:-55135678 | None:intergenic |
TTGAGGAGAAGCTGCATATC+AGG | 0.368769 | 8.2:-55133419 | None:intergenic |
GATCTGGCTCCATAGTTATC+TGG | 0.370914 | 8.2:-55136609 | None:intergenic |
GCAGAAGGACGACCTCGTTT+TGG | 0.381089 | 8.2:+55133311 | MS.gene42767:CDS |
TCCAGTTCGCATAGAACGTC+TGG | 0.414965 | 8.2:-55133034 | None:intergenic |
GATTAAAACGATGCCGTGTT+CGG | 0.422134 | 8.2:-55133131 | None:intergenic |
ATCAAGCATCCAGATAACTA+TGG | 0.424375 | 8.2:+55136600 | MS.gene42767:CDS |
ATTTAGTCTTCACTTTCCTC+AGG | 0.432864 | 8.2:-55137155 | None:intergenic |
GCCTTAGTCTGCAGCACTAA+AGG | 0.450575 | 8.2:+55136549 | MS.gene42767:intron |
CATCCCGACCATGTCAGAAA+TGG | 0.450961 | 8.2:+55133000 | None:intergenic |
AGAGCAAGCAAGTTAAGCAT+TGG | 0.453888 | 8.2:+55137008 | MS.gene42767:CDS |
AATGTAACAGAAGGAGGATC+TGG | 0.473691 | 8.2:-55136625 | None:intergenic |
GAGCAAGCAAGTTAAGCATT+GGG | 0.475187 | 8.2:+55137009 | MS.gene42767:CDS |
TTCTTCGTCCATTTCTGACA+TGG | 0.475461 | 8.2:-55133008 | None:intergenic |
AATGTTAAAAGTGCAGCATC+TGG | 0.477607 | 8.2:+55137040 | MS.gene42767:CDS |
CTTCAGATCTGTAGATTCGC+TGG | 0.480426 | 8.2:+55135652 | MS.gene42767:intron |
ATAAGCGTGAGAGGTAGGTT+TGG | 0.486372 | 8.2:-55137072 | None:intergenic |
GTTATTCAGATTCAATATCC+TGG | 0.487642 | 8.2:+55133395 | MS.gene42767:CDS |
GTTCTATGACGGCGTCTTGG+TGG | 0.496782 | 8.2:-55133105 | None:intergenic |
CCTGAACAGTAAAGGTCAAA+GGG | 0.505595 | 8.2:-55135757 | None:intergenic |
CTGAAATGCTACCAAGAGTT+CGG | 0.505766 | 8.2:-55136799 | None:intergenic |
ATTGAGGATCTTGAATGGCC+TGG | 0.506692 | 8.2:+55136577 | MS.gene42767:CDS |
TGAAGGACATGGGGACCTGC+AGG | 0.506864 | 8.2:+55136654 | MS.gene42767:CDS |
TAGCATTTCAGTGTGATCAC+CGG | 0.508883 | 8.2:+55136811 | MS.gene42767:CDS |
ACCAGACGTTCTATGCGAAC+TGG | 0.510099 | 8.2:+55133033 | MS.gene42767:CDS |
GTTATCTGGATGCTTGATCC+AGG | 0.519897 | 8.2:-55136595 | None:intergenic |
ATGGCATACCTGAACAGTAA+AGG | 0.520495 | 8.2:-55135765 | None:intergenic |
CACGCTTATGTCGATTCTGC+CGG | 0.524198 | 8.2:+55137086 | MS.gene42767:CDS |
AAGTGGTTGTCTTCAAGCAA+AGG | 0.524384 | 8.2:+55133162 | MS.gene42767:CDS |
TCGACCAGGTTGCTGATAGC+CGG | 0.525487 | 8.2:-55137105 | None:intergenic |
AGCACTAAAGGAAGCTATTG+AGG | 0.528126 | 8.2:+55136561 | MS.gene42767:CDS |
ACGCTCTAACCGCCGTTCGA+TGG | 0.529777 | 8.2:+55133077 | MS.gene42767:CDS |
ACCTGAACAGTAAAGGTCAA+AGG | 0.531404 | 8.2:-55135758 | None:intergenic |
ACATTGAGAGCTGAAGGACA+TGG | 0.533667 | 8.2:+55136643 | MS.gene42767:CDS |
GTCAAAGGGTTAGTCCCAGC+AGG | 0.538849 | 8.2:-55135743 | None:intergenic |
AGAGTTCTATGACGGCGTCT+TGG | 0.544782 | 8.2:-55133108 | None:intergenic |
GATTCCTGAAACCGTTGCAT+GGG | 0.550720 | 8.2:+55135706 | MS.gene42767:CDS |
GGATTCCTGAAACCGTTGCA+TGG | 0.552682 | 8.2:+55135705 | MS.gene42767:CDS |
TTGTGCGAATTCCGAACTCT+TGG | 0.553644 | 8.2:+55136788 | MS.gene42767:CDS |
TCTGTTACATTGAGAGCTGA+AGG | 0.555436 | 8.2:+55136637 | MS.gene42767:CDS |
TTGGTGGCGCTTCCATCGAA+CGG | 0.556421 | 8.2:-55133089 | None:intergenic |
TGCGAACTGGAAAACGTACA+AGG | 0.564049 | 8.2:+55133046 | MS.gene42767:CDS |
AGCATTTCAGTGTGATCACC+GGG | 0.564504 | 8.2:+55136812 | MS.gene42767:CDS |
TCGACATAAGCGTGAGAGGT+AGG | 0.565313 | 8.2:-55137077 | None:intergenic |
AAGCTATTGAGGATCTTGAA+TGG | 0.582081 | 8.2:+55136572 | MS.gene42767:CDS |
ATTAATACTTGAAAGAAGCC+CGG | 0.583729 | 8.2:-55136830 | None:intergenic |
CATTGAGAGCTGAAGGACAT+GGG | 0.592060 | 8.2:+55136644 | MS.gene42767:CDS |
TGAATTCTTTGTGAAACCTG+AGG | 0.592342 | 8.2:+55137139 | MS.gene42767:CDS |
GTCATAGAACTCTCCGAACA+CGG | 0.593745 | 8.2:+55133118 | MS.gene42767:CDS |
AGCAAGTTAAGCATTGGGAG+AGG | 0.601192 | 8.2:+55137014 | MS.gene42767:CDS |
GCTCTCAATGTAACAGAAGG+AGG | 0.601673 | 8.2:-55136631 | None:intergenic |
TCAATATGAGCTATTCGACC+AGG | 0.602194 | 8.2:-55137119 | None:intergenic |
CGATATGATTACAATGCAGA+AGG | 0.602790 | 8.2:+55133296 | MS.gene42767:CDS |
TCAGCTCTCAATGTAACAGA+AGG | 0.603298 | 8.2:-55136634 | None:intergenic |
AGAAGCTGCATATCAGGACC+AGG | 0.605824 | 8.2:-55133413 | None:intergenic |
AAAATTGTAGTCCCATGCAA+CGG | 0.611318 | 8.2:-55135717 | None:intergenic |
AGAATCGACATAAGCGTGAG+AGG | 0.616523 | 8.2:-55137081 | None:intergenic |
AAGTTAAGCATTGGGAGAGG+TGG | 0.624290 | 8.2:+55137017 | MS.gene42767:CDS |
GTGTTCGGAGAGTTCTATGA+CGG | 0.640641 | 8.2:-55133116 | None:intergenic |
GTGGCGCTTCCATCGAACGG+CGG | 0.657652 | 8.2:-55133086 | None:intergenic |
TATTAGAAGTTGATGCTCTG+AGG | 0.660938 | 8.2:-55136959 | None:intergenic |
TCTGCCGGCTATCAGCAACC+TGG | 0.662037 | 8.2:+55137101 | MS.gene42767:CDS |
TGAATAACACCAGAATGACC+AGG | 0.667670 | 8.2:-55133380 | None:intergenic |
CCTAAACTCACACCAAAACG+AGG | 0.678815 | 8.2:-55133323 | None:intergenic |
ATTGAGAGCTGAAGGACATG+GGG | 0.686071 | 8.2:+55136645 | MS.gene42767:CDS |
TTTGTGCAGAGATCAGAACA+AGG | 0.733824 | 8.2:+55135684 | MS.gene42767:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACCAAAATGAAATAAAATAT+TGG | + | chr8.2:55134452-55134471 | MS.gene42767:intron | 15.0% |
!! | ATAAAACAAATATGATATAG+AGG | - | chr8.2:55134767-55134786 | None:intergenic | 15.0% |
!! | ATAAAGAAATTTAAATTCTG+TGG | - | chr8.2:55135540-55135559 | None:intergenic | 15.0% |
!! | TGTTAAATATAAAGTAGTTT+CGG | + | chr8.2:55134044-55134063 | MS.gene42767:intron | 15.0% |
!!! | TATATTTTGTGTATTTGAAT+GGG | - | chr8.2:55133482-55133501 | None:intergenic | 15.0% |
!! | AATATAATGAATTCAAAGTG+CGG | - | chr8.2:55136727-55136746 | None:intergenic | 20.0% |
!! | AATGAAATAAAATATTGGCA+AGG | + | chr8.2:55134457-55134476 | MS.gene42767:intron | 20.0% |
!! | ACTGTTAGATTAAAATTGTA+AGG | - | chr8.2:55134229-55134248 | None:intergenic | 20.0% |
!! | AGTAAGAAAATTGAAGAAAT+TGG | - | chr8.2:55133208-55133227 | None:intergenic | 20.0% |
!!! | AACCATAGAATCATTTTAAT+TGG | + | chr8.2:55136489-55136508 | MS.gene42767:intron | 20.0% |
!!! | ACCATAGAATCATTTTAATT+GGG | + | chr8.2:55136490-55136509 | MS.gene42767:intron | 20.0% |
!!! | AGCTATAAATGACAATTTTA+TGG | - | chr8.2:55135053-55135072 | None:intergenic | 20.0% |
!!! | AGTATATTGTTTTTACTCTT+TGG | - | chr8.2:55134840-55134859 | None:intergenic | 20.0% |
!!! | CTATATTTTGTGTATTTGAA+TGG | - | chr8.2:55133483-55133502 | None:intergenic | 20.0% |
!!! | GCCAATATTTTATTTCATTT+TGG | - | chr8.2:55134456-55134475 | None:intergenic | 20.0% |
!!! | GTATATTGTTTTTACTCTTT+GGG | - | chr8.2:55134839-55134858 | None:intergenic | 20.0% |
!!! | TAAATCCAAAATTTTGTAGA+GGG | - | chr8.2:55135889-55135908 | None:intergenic | 20.0% |
!!! | TATAAGTTTTACTAAAACCA+CGG | - | chr8.2:55133568-55133587 | None:intergenic | 20.0% |
!!! | TTAAATCCAAAATTTTGTAG+AGG | - | chr8.2:55135890-55135909 | None:intergenic | 20.0% |
! | AAAGGTTTATCTCAAAAAAG+AGG | + | chr8.2:55133180-55133199 | MS.gene42767:CDS | 25.0% |
! | AAGGATCTATATGTTGAATT+AGG | + | chr8.2:55134387-55134406 | MS.gene42767:intron | 25.0% |
! | ACTAGTAACCAGTAATATAA+TGG | - | chr8.2:55135986-55136005 | None:intergenic | 25.0% |
! | ACTTATTTGAGCTTATCTAT+TGG | - | chr8.2:55133888-55133907 | None:intergenic | 25.0% |
! | ATATAGATCCTTATTGGAAA+TGG | - | chr8.2:55134379-55134398 | None:intergenic | 25.0% |
! | CCAAATTAATGGTCATTTAT+TGG | + | chr8.2:55135607-55135626 | MS.gene42767:intron | 25.0% |
! | CCAATAAATGACCATTAATT+TGG | - | chr8.2:55135610-55135629 | None:intergenic | 25.0% |
! | GAAAACTAATTAGATGTAGA+AGG | - | chr8.2:55135403-55135422 | None:intergenic | 25.0% |
! | GAAATCCAATTAGAATTTGT+CGG | + | chr8.2:55135473-55135492 | MS.gene42767:intron | 25.0% |
! | TCATTCAACCATTATATTAC+TGG | + | chr8.2:55135975-55135994 | MS.gene42767:intron | 25.0% |
! | TCCCAATTAAAATGATTCTA+TGG | - | chr8.2:55136494-55136513 | None:intergenic | 25.0% |
! | TTAATGTGATAGTTCAATGA+TGG | + | chr8.2:55135906-55135925 | MS.gene42767:intron | 25.0% |
! | TTCAACATATAGATCCTTAT+TGG | - | chr8.2:55134385-55134404 | None:intergenic | 25.0% |
! | TTGCCTATAGTATATTGAAA+TGG | - | chr8.2:55134599-55134618 | None:intergenic | 25.0% |
!! | CAAACAACTTTTCATATAAG+TGG | + | chr8.2:55136371-55136390 | MS.gene42767:intron | 25.0% |
!! | CTTTATCAAGTAAGAACTTT+TGG | + | chr8.2:55135554-55135573 | MS.gene42767:intron | 25.0% |
!!! | ACTACATTTTTATTTCACTG+TGG | + | chr8.2:55133505-55133524 | MS.gene42767:intron | 25.0% |
!!! | ATGATTTGCTTTATTATCTG+AGG | + | chr8.2:55134788-55134807 | MS.gene42767:intron | 25.0% |
!!! | GCTATTTTCAAAAGCTATTT+TGG | + | chr8.2:55133772-55133791 | MS.gene42767:intron | 25.0% |
!!! | TTTTCTTTGATAACACTACT+AGG | - | chr8.2:55136987-55137006 | None:intergenic | 25.0% |
AAACATGCCCTTAGTATATT+TGG | + | chr8.2:55133914-55133933 | MS.gene42767:intron | 30.0% | |
AAGTTCCGACAAATTCTAAT+TGG | - | chr8.2:55135481-55135500 | None:intergenic | 30.0% | |
AATAATGACCTAGTATCCTT+TGG | + | chr8.2:55135812-55135831 | MS.gene42767:intron | 30.0% | |
AGATGTAATTCCTTTCAGAA+TGG | + | chr8.2:55135581-55135600 | MS.gene42767:intron | 30.0% | |
ATTAATACTTGAAAGAAGCC+CGG | - | chr8.2:55136833-55136852 | None:intergenic | 30.0% | |
ATTTCTTGATACTCGATATC+AGG | - | chr8.2:55135305-55135324 | None:intergenic | 30.0% | |
CACAGTTCCAAATATACTAA+GGG | - | chr8.2:55133924-55133943 | None:intergenic | 30.0% | |
CACTGCTTACTATATAAGAA+TGG | - | chr8.2:55135014-55135033 | None:intergenic | 30.0% | |
CTATCAGTGTTGTCAAATAT+TGG | - | chr8.2:55135168-55135187 | None:intergenic | 30.0% | |
CTTCATTGATAGGTATTTAG+AGG | - | chr8.2:55135277-55135296 | None:intergenic | 30.0% | |
GAATTTGTGACTGTCATAAA+TGG | - | chr8.2:55135333-55135352 | None:intergenic | 30.0% | |
GTTATTCAGATTCAATATCC+TGG | + | chr8.2:55133395-55133414 | MS.gene42767:CDS | 30.0% | |
TATAGTAAGCAGTGTATTGA+TGG | + | chr8.2:55135020-55135039 | MS.gene42767:intron | 30.0% | |
TGAACTGTCTGATTAAGTTT+AGG | + | chr8.2:55134179-55134198 | MS.gene42767:intron | 30.0% | |
TTTCTTGATACTCGATATCA+GGG | - | chr8.2:55135304-55135323 | None:intergenic | 30.0% | |
! | ATTTGAAATTTGAGCCAAAC+TGG | + | chr8.2:55136527-55136546 | MS.gene42767:intron | 30.0% |
! | CTGCCATTTCAATATACTAT+AGG | + | chr8.2:55134593-55134612 | MS.gene42767:intron | 30.0% |
! | GAAAAACTGTTGCTTGTATA+CGG | + | chr8.2:55136237-55136256 | MS.gene42767:intron | 30.0% |
! | GATAGTTCAATGATGGAAAT+TGG | + | chr8.2:55135913-55135932 | MS.gene42767:intron | 30.0% |
! | TATTTGGAATGACAGTAAGT+AGG | - | chr8.2:55133633-55133652 | None:intergenic | 30.0% |
! | TGAGTGTTTAGAACCAAAAT+AGG | - | chr8.2:55134016-55134035 | None:intergenic | 30.0% |
!! | ATTTTTCAACTACTCATGTG+TGG | - | chr8.2:55135231-55135250 | None:intergenic | 30.0% |
!! | GTTTTAATCGTTGAAGAAAG+TGG | + | chr8.2:55133145-55133164 | MS.gene42767:CDS | 30.0% |
!! | TTTACTCTTTGGGTTGATAT+AGG | - | chr8.2:55134829-55134848 | None:intergenic | 30.0% |
AAAATTGTAGTCCCATGCAA+CGG | - | chr8.2:55135720-55135739 | None:intergenic | 35.0% | |
AAGCTATTGAGGATCTTGAA+TGG | + | chr8.2:55136572-55136591 | MS.gene42767:CDS | 35.0% | |
AATAAGCCGTTTATCCAAAC+AGG | - | chr8.2:55133667-55133686 | None:intergenic | 35.0% | |
AATCTACAGATCTGAAGATG+TGG | - | chr8.2:55135649-55135668 | None:intergenic | 35.0% | |
AATTACACCTAGAGCTAGTT+TGG | + | chr8.2:55136282-55136301 | MS.gene42767:intron | 35.0% | |
AATTTGGCTACCATTCTGAA+AGG | - | chr8.2:55135594-55135613 | None:intergenic | 35.0% | |
ATAAGCCGTTTATCCAAACA+GGG | - | chr8.2:55133666-55133685 | None:intergenic | 35.0% | |
ATAGGTAACCAAGCAACTAA+CGG | - | chr8.2:55133998-55134017 | None:intergenic | 35.0% | |
ATCAAGCATCCAGATAACTA+TGG | + | chr8.2:55136600-55136619 | MS.gene42767:CDS | 35.0% | |
CAGAATGGTAGCCAAATTAA+TGG | + | chr8.2:55135596-55135615 | MS.gene42767:intron | 35.0% | |
CAGCTTATGTACAATGTCAT+AGG | + | chr8.2:55133820-55133839 | MS.gene42767:intron | 35.0% | |
CATGCTTTCCATTTCCAATA+AGG | + | chr8.2:55134368-55134387 | MS.gene42767:intron | 35.0% | |
CATTAATAGAAGGGTCTACA+AGG | - | chr8.2:55134922-55134941 | None:intergenic | 35.0% | |
CCACAGTTCCAAATATACTA+AGG | - | chr8.2:55133925-55133944 | None:intergenic | 35.0% | |
CGATATGATTACAATGCAGA+AGG | + | chr8.2:55133296-55133315 | MS.gene42767:CDS | 35.0% | |
CGGGCAAAACATTAATAGAA+GGG | - | chr8.2:55134931-55134950 | None:intergenic | 35.0% | |
CTGTGCAGTAAAAAATTTGG+AGG | + | chr8.2:55136078-55136097 | MS.gene42767:intron | 35.0% | |
GTATTGCTTTCGACTCAAAT+GGG | + | chr8.2:55136680-55136699 | MS.gene42767:intron | 35.0% | |
GTGCTGTGCAGTAAAAAATT+TGG | + | chr8.2:55136075-55136094 | MS.gene42767:intron | 35.0% | |
TAAGTTCTGTGAGACTGTTT+AGG | - | chr8.2:55133863-55133882 | None:intergenic | 35.0% | |
TAATGTACGAGAAGTGAGAA+AGG | - | chr8.2:55134959-55134978 | None:intergenic | 35.0% | |
TCGTTGCTTATGGTTATAAC+AGG | + | chr8.2:55136922-55136941 | MS.gene42767:intron | 35.0% | |
TGAATGATTGCGTGAATGTA+GGG | + | chr8.2:55134254-55134273 | MS.gene42767:intron | 35.0% | |
TGAATTCTTTGTGAAACCTG+AGG | + | chr8.2:55137139-55137158 | MS.gene42767:CDS | 35.0% | |
TGACAGTTAGAACATACTTG+AGG | - | chr8.2:55133439-55133458 | None:intergenic | 35.0% | |
TGCGTACATGACATTCAATA+TGG | + | chr8.2:55134326-55134345 | MS.gene42767:intron | 35.0% | |
TGTATTGCTTTCGACTCAAA+TGG | + | chr8.2:55136679-55136698 | MS.gene42767:intron | 35.0% | |
TTAAGCCCTGTTTGGATAAA+CGG | + | chr8.2:55133658-55133677 | MS.gene42767:intron | 35.0% | |
TTTCTCACTTCTCGTACATT+AGG | + | chr8.2:55134958-55134977 | MS.gene42767:intron | 35.0% | |
! | AATGTTAAAAGTGCAGCATC+TGG | + | chr8.2:55137040-55137059 | MS.gene42767:CDS | 35.0% |
! | AATTTGACTTAAACCGTGAC+AGG | - | chr8.2:55135366-55135385 | None:intergenic | 35.0% |
! | ACTACAATTTTGAACCTGCT+GGG | + | chr8.2:55135729-55135748 | MS.gene42767:CDS | 35.0% |
! | AGTTGCTTGGTTACCTATTT+TGG | + | chr8.2:55134000-55134019 | MS.gene42767:intron | 35.0% |
! | AGTTTATCCAAACTAGCTCT+AGG | - | chr8.2:55136292-55136311 | None:intergenic | 35.0% |
! | ATCTGTCATTTCGTTGCTTA+TGG | + | chr8.2:55136912-55136931 | MS.gene42767:intron | 35.0% |
! | CCTTAGTATATTTGGAACTG+TGG | + | chr8.2:55133922-55133941 | MS.gene42767:intron | 35.0% |
! | GTGTTTATAGGGAAGGTTTT+TGG | + | chr8.2:55134665-55134684 | MS.gene42767:intron | 35.0% |
! | GTTTAGGCGATTTGAAATGT+TGG | + | chr8.2:55134195-55134214 | MS.gene42767:intron | 35.0% |
! | TGATTGTTTGAACGCGTTTT+CGG | + | chr8.2:55133355-55133374 | MS.gene42767:CDS | 35.0% |
! | TGCAACGGTAGAGAATTTTA+TGG | - | chr8.2:55135787-55135806 | None:intergenic | 35.0% |
!! | TATTAGAAGTTGATGCTCTG+AGG | - | chr8.2:55136962-55136981 | None:intergenic | 35.0% |
!!! | AGATTTTTTGAGAACTGCCA+TGG | - | chr8.2:55135125-55135144 | None:intergenic | 35.0% |
AACGACATCCAAAGGATACT+AGG | - | chr8.2:55135823-55135842 | None:intergenic | 40.0% | |
AAGTGGTTGTCTTCAAGCAA+AGG | + | chr8.2:55133162-55133181 | MS.gene42767:CDS | 40.0% | |
AATCCCCATGAATTTGTAGC+TGG | + | chr8.2:55134483-55134502 | MS.gene42767:intron | 40.0% | |
AATGTAACAGAAGGAGGATC+TGG | - | chr8.2:55136628-55136647 | None:intergenic | 40.0% | |
ACAGGGCTTAAGTGCATATT+TGG | - | chr8.2:55133649-55133668 | None:intergenic | 40.0% | |
ACATCTGCCATAAAACGTCA+GGG | + | chr8.2:55135076-55135095 | MS.gene42767:intron | 40.0% | |
ACCTGAACAGTAAAGGTCAA+AGG | - | chr8.2:55135761-55135780 | None:intergenic | 40.0% | |
AGCACTAAAGGAAGCTATTG+AGG | + | chr8.2:55136561-55136580 | MS.gene42767:CDS | 40.0% | |
ATAAGTCGATGGCTGGTAAA+TGG | - | chr8.2:55136894-55136913 | None:intergenic | 40.0% | |
ATATGCACTTAAGCCCTGTT+TGG | + | chr8.2:55133650-55133669 | MS.gene42767:intron | 40.0% | |
ATGGCATACCTGAACAGTAA+AGG | - | chr8.2:55135768-55135787 | None:intergenic | 40.0% | |
CATCCAGCTACAAATTCATG+GGG | - | chr8.2:55134489-55134508 | None:intergenic | 40.0% | |
CATTCACGCAATCATTCACT+TGG | - | chr8.2:55134252-55134271 | None:intergenic | 40.0% | |
CCTGAACAGTAAAGGTCAAA+GGG | - | chr8.2:55135760-55135779 | None:intergenic | 40.0% | |
CGAAATGACAGATAAGTCGA+TGG | - | chr8.2:55136905-55136924 | None:intergenic | 40.0% | |
CTGAAATGCTACCAAGAGTT+CGG | - | chr8.2:55136802-55136821 | None:intergenic | 40.0% | |
GAAAATCCAACGACATCCAA+AGG | - | chr8.2:55135831-55135850 | None:intergenic | 40.0% | |
GATTAAAACGATGCCGTGTT+CGG | - | chr8.2:55133134-55133153 | None:intergenic | 40.0% | |
GCATCCAGCTACAAATTCAT+GGG | - | chr8.2:55134490-55134509 | None:intergenic | 40.0% | |
GCGGGCAAAACATTAATAGA+AGG | - | chr8.2:55134932-55134951 | None:intergenic | 40.0% | |
GGTCATTATTCAAGCTGCAA+CGG | - | chr8.2:55135802-55135821 | None:intergenic | 40.0% | |
GTACACATCTGTACACAAGA+TGG | + | chr8.2:55134525-55134544 | MS.gene42767:intron | 40.0% | |
GTGAATGATTGCGTGAATGT+AGG | + | chr8.2:55134253-55134272 | MS.gene42767:intron | 40.0% | |
GTGTTGTCAAATATTGGCCA+TGG | - | chr8.2:55135162-55135181 | None:intergenic | 40.0% | |
TAGCATTTCAGTGTGATCAC+CGG | + | chr8.2:55136811-55136830 | MS.gene42767:CDS | 40.0% | |
TAGTATCCTTTGGATGTCGT+TGG | + | chr8.2:55135822-55135841 | MS.gene42767:intron | 40.0% | |
TAGTTGAGACTTGACAGGTT+TGG | + | chr8.2:55134410-55134429 | MS.gene42767:intron | 40.0% | |
TCAATATGAGCTATTCGACC+AGG | - | chr8.2:55137122-55137141 | None:intergenic | 40.0% | |
TCAGCTCTCAATGTAACAGA+AGG | - | chr8.2:55136637-55136656 | None:intergenic | 40.0% | |
TCAGGGTGATCTTCATTGAT+AGG | - | chr8.2:55135287-55135306 | None:intergenic | 40.0% | |
TCTGATCTCTGCACAAATAC+TGG | - | chr8.2:55135681-55135700 | None:intergenic | 40.0% | |
TCTGTTACATTGAGAGCTGA+AGG | + | chr8.2:55136637-55136656 | MS.gene42767:CDS | 40.0% | |
TGAATAACACCAGAATGACC+AGG | - | chr8.2:55133383-55133402 | None:intergenic | 40.0% | |
TGATTTCGTGTCTCGAGAAA+GGG | + | chr8.2:55133945-55133964 | MS.gene42767:intron | 40.0% | |
TGCATCCAGCTACAAATTCA+TGG | - | chr8.2:55134491-55134510 | None:intergenic | 40.0% | |
TGTCATGTACGCAACTTGTA+TGG | - | chr8.2:55134319-55134338 | None:intergenic | 40.0% | |
TTAGGTAGTTGAGACTTGAC+AGG | + | chr8.2:55134405-55134424 | MS.gene42767:intron | 40.0% | |
TTCTCCCATGTATCAATTGC+AGG | - | chr8.2:55136220-55136239 | None:intergenic | 40.0% | |
TTGTCAAATATTGGCCATGG+CGG | - | chr8.2:55135159-55135178 | None:intergenic | 40.0% | |
TTGTGATGAGACATCCATCA+TGG | + | chr8.2:55134620-55134639 | MS.gene42767:intron | 40.0% | |
TTTGTGCAGAGATCAGAACA+AGG | + | chr8.2:55135684-55135703 | MS.gene42767:CDS | 40.0% | |
! | ACTTGATGCAGTGTTGTTGA+TGG | - | chr8.2:55134715-55134734 | None:intergenic | 40.0% |
! | AGGGTCCCTCTACAAAATTT+TGG | + | chr8.2:55135881-55135900 | MS.gene42767:intron | 40.0% |
! | AGTAAGCAGTGTATTGATGG+CGG | + | chr8.2:55135023-55135042 | MS.gene42767:intron | 40.0% |
! | GACTACAATTTTGAACCTGC+TGG | + | chr8.2:55135728-55135747 | MS.gene42767:CDS | 40.0% |
! | TATTTCACTGTGGAGTGTCA+CGG | + | chr8.2:55133515-55133534 | MS.gene42767:intron | 40.0% |
!! | AGGAGCTTTGGGACTAAATT+TGG | - | chr8.2:55134902-55134921 | None:intergenic | 40.0% |
!! | CTCGTTTTGGTGTGAGTTTA+GGG | + | chr8.2:55133324-55133343 | MS.gene42767:CDS | 40.0% |
AACTAGATTCCCGATAGTCG+GGG | + | chr8.2:55134127-55134146 | MS.gene42767:intron | 45.0% | |
AAGCATGATTCCCCGACTAT+CGG | - | chr8.2:55134140-55134159 | None:intergenic | 45.0% | |
AAGGGTCTACAAGGAGCTTT+GGG | - | chr8.2:55134913-55134932 | None:intergenic | 45.0% | |
ACATTGAGAGCTGAAGGACA+TGG | + | chr8.2:55136643-55136662 | MS.gene42767:CDS | 45.0% | |
AGAATCGACATAAGCGTGAG+AGG | - | chr8.2:55137084-55137103 | None:intergenic | 45.0% | |
AGCATTTCAGTGTGATCACC+GGG | + | chr8.2:55136812-55136831 | MS.gene42767:CDS | 45.0% | |
ATAAGCGTGAGAGGTAGGTT+TGG | - | chr8.2:55137075-55137094 | None:intergenic | 45.0% | |
ATGACAGATAAGTCGATGGC+TGG | - | chr8.2:55136901-55136920 | None:intergenic | 45.0% | |
ATTGAGAGCTGAAGGACATG+GGG | + | chr8.2:55136645-55136664 | MS.gene42767:CDS | 45.0% | |
ATTGAGGATCTTGAATGGCC+TGG | + | chr8.2:55136577-55136596 | MS.gene42767:CDS | 45.0% | |
CAATGGCGTGTTTATAGGGA+AGG | + | chr8.2:55134658-55134677 | MS.gene42767:intron | 45.0% | |
CACATCTGCCATAAAACGTC+AGG | + | chr8.2:55135075-55135094 | MS.gene42767:intron | 45.0% | |
CACCACCATCCGTTACAAAT+TGG | + | chr8.2:55135099-55135118 | MS.gene42767:intron | 45.0% | |
CATCCGTTACAAATTGGCCA+TGG | + | chr8.2:55135105-55135124 | MS.gene42767:intron | 45.0% | |
CATTGAGAGCTGAAGGACAT+GGG | + | chr8.2:55136644-55136663 | MS.gene42767:CDS | 45.0% | |
CCCTTTGACCTTTACTGTTC+AGG | + | chr8.2:55135757-55135776 | MS.gene42767:CDS | 45.0% | |
CCTAAACTCACACCAAAACG+AGG | - | chr8.2:55133326-55133345 | None:intergenic | 45.0% | |
CGAAAGCAATACAAACCTGC+AGG | - | chr8.2:55136672-55136691 | None:intergenic | 45.0% | |
CGAACTAGATTCCCGATAGT+CGG | + | chr8.2:55134125-55134144 | MS.gene42767:intron | 45.0% | |
CGCACCTGCAATTGATACAT+GGG | + | chr8.2:55136213-55136232 | MS.gene42767:intron | 45.0% | |
CTACAGATCTGAAGATGTGG+AGG | - | chr8.2:55135646-55135665 | None:intergenic | 45.0% | |
CTGCCATGGCCAATTTGTAA+CGG | - | chr8.2:55135111-55135130 | None:intergenic | 45.0% | |
CTTCAGATCTGTAGATTCGC+TGG | + | chr8.2:55135652-55135671 | MS.gene42767:intron | 45.0% | |
GAACTAGATTCCCGATAGTC+GGG | + | chr8.2:55134126-55134145 | MS.gene42767:intron | 45.0% | |
GAGAAAGGGGAACTACAACT+TGG | + | chr8.2:55133959-55133978 | MS.gene42767:intron | 45.0% | |
GAGAAGTGAGAAAGGAAGTG+CGG | - | chr8.2:55134951-55134970 | None:intergenic | 45.0% | |
GATTCCTGAAACCGTTGCAT+GGG | + | chr8.2:55135706-55135725 | MS.gene42767:CDS | 45.0% | |
GATTTCGTGTCTCGAGAAAG+GGG | + | chr8.2:55133946-55133965 | MS.gene42767:intron | 45.0% | |
GCTCTCAATGTAACAGAAGG+AGG | - | chr8.2:55136634-55136653 | None:intergenic | 45.0% | |
GCTGCAATGGCGTGTTTATA+GGG | + | chr8.2:55134654-55134673 | MS.gene42767:intron | 45.0% | |
GTCATAGAACTCTCCGAACA+CGG | + | chr8.2:55133118-55133137 | MS.gene42767:CDS | 45.0% | |
GTGATTTCGTGTCTCGAGAA+AGG | + | chr8.2:55133944-55133963 | MS.gene42767:intron | 45.0% | |
GTGTTCGGAGAGTTCTATGA+CGG | - | chr8.2:55133119-55133138 | None:intergenic | 45.0% | |
GTTATCTGGATGCTTGATCC+AGG | - | chr8.2:55136598-55136617 | None:intergenic | 45.0% | |
TCCTTTAGTGCTGCAGACTA+AGG | - | chr8.2:55136553-55136572 | None:intergenic | 45.0% | |
TCGCACCTGCAATTGATACA+TGG | + | chr8.2:55136212-55136231 | MS.gene42767:intron | 45.0% | |
TGCGAACTGGAAAACGTACA+AGG | + | chr8.2:55133046-55133065 | MS.gene42767:CDS | 45.0% | |
TGTAGAAGGCTAGAAGCTGT+CGG | - | chr8.2:55135389-55135408 | None:intergenic | 45.0% | |
TTCCAACAGATTGCCTGTCA+CGG | + | chr8.2:55135350-55135369 | MS.gene42767:intron | 45.0% | |
TTGAGGAGAAGCTGCATATC+AGG | - | chr8.2:55133422-55133441 | None:intergenic | 45.0% | |
TTGTGCGAATTCCGAACTCT+TGG | + | chr8.2:55136788-55136807 | MS.gene42767:CDS | 45.0% | |
! | AATTTTGTAGAGGGACCCTG+AGG | - | chr8.2:55135880-55135899 | None:intergenic | 45.0% |
! | AGAAGTGAGAAAGGAAGTGC+GGG | - | chr8.2:55134950-55134969 | None:intergenic | 45.0% |
! | ATCGATTGCAAATGGCGGAA+TGG | + | chr8.2:55134563-55134582 | MS.gene42767:intron | 45.0% |
! | CATGGCCAATTTGTAACGGA+TGG | - | chr8.2:55135107-55135126 | None:intergenic | 45.0% |
! | CTGACGTTTTATGGCAGATG+TGG | - | chr8.2:55135077-55135096 | None:intergenic | 45.0% |
! | GATCTGGCTCCATAGTTATC+TGG | - | chr8.2:55136612-55136631 | None:intergenic | 45.0% |
! | GCAGCGTTATCGATTGCAAA+TGG | + | chr8.2:55134555-55134574 | MS.gene42767:intron | 45.0% |
! | GCGTTATCGATTGCAAATGG+CGG | + | chr8.2:55134558-55134577 | MS.gene42767:intron | 45.0% |
! | GGATGGTGAAATATGGTGGA+AGG | - | chr8.2:55134691-55134710 | None:intergenic | 45.0% |
! | TGATGCAGTGTTGTTGATGG+CGG | - | chr8.2:55134712-55134731 | None:intergenic | 45.0% |
! | TTTTCGGTTCCTGGTCATTC+TGG | + | chr8.2:55133371-55133390 | MS.gene42767:CDS | 45.0% |
!! | AAGTTAAGCATTGGGAGAGG+TGG | + | chr8.2:55137017-55137036 | MS.gene42767:CDS | 45.0% |
!! | AGCAAGTTAAGCATTGGGAG+AGG | + | chr8.2:55137014-55137033 | MS.gene42767:CDS | 45.0% |
!! | CCTCGTTTTGGTGTGAGTTT+AGG | + | chr8.2:55133323-55133342 | MS.gene42767:CDS | 45.0% |
!! | TGATGGCGGATGGTGAAATA+TGG | - | chr8.2:55134698-55134717 | None:intergenic | 45.0% |
AACCGTGACAGGCAATCTGT+TGG | - | chr8.2:55135355-55135374 | None:intergenic | 50.0% | |
ACCAGACGTTCTATGCGAAC+TGG | + | chr8.2:55133033-55133052 | MS.gene42767:CDS | 50.0% | |
AGAAGCTGCATATCAGGACC+AGG | - | chr8.2:55133416-55133435 | None:intergenic | 50.0% | |
AGAATCACGCTTTGTCACCG+TGG | + | chr8.2:55133548-55133567 | MS.gene42767:intron | 50.0% | |
AGAGTTCTATGACGGCGTCT+TGG | - | chr8.2:55133111-55133130 | None:intergenic | 50.0% | |
AGCATGATTCCCCGACTATC+GGG | - | chr8.2:55134139-55134158 | None:intergenic | 50.0% | |
ATCCATCATGGCTGCACGAT+AGG | + | chr8.2:55134632-55134651 | MS.gene42767:intron | 50.0% | |
CTGATCCACCGTTAGTTGCT+TGG | + | chr8.2:55133987-55134006 | MS.gene42767:intron | 50.0% | |
GAAGGGTCTACAAGGAGCTT+TGG | - | chr8.2:55134914-55134933 | None:intergenic | 50.0% | |
GCCTTAGTCTGCAGCACTAA+AGG | + | chr8.2:55136549-55136568 | MS.gene42767:intron | 50.0% | |
GGATTCCTGAAACCGTTGCA+TGG | + | chr8.2:55135705-55135724 | MS.gene42767:CDS | 50.0% | |
GGCTGCAATGGCGTGTTTAT+AGG | + | chr8.2:55134653-55134672 | MS.gene42767:intron | 50.0% | |
GGTAACCAAGCAACTAACGG+TGG | - | chr8.2:55133995-55134014 | None:intergenic | 50.0% | |
TAGTCCCATGCAACGGTTTC+AGG | - | chr8.2:55135713-55135732 | None:intergenic | 50.0% | |
TCCAGTTCGCATAGAACGTC+TGG | - | chr8.2:55133037-55133056 | None:intergenic | 50.0% | |
TCGACATAAGCGTGAGAGGT+AGG | - | chr8.2:55137080-55137099 | None:intergenic | 50.0% | |
! | TGGCGGATGGTGAAATATGG+TGG | - | chr8.2:55134695-55134714 | None:intergenic | 50.0% |
! | TTGAACGCGTTTTCGGTTCC+TGG | + | chr8.2:55133362-55133381 | MS.gene42767:CDS | 50.0% |
!! | ATATTGGCCATGGCGGATTG+TGG | - | chr8.2:55135152-55135171 | None:intergenic | 50.0% |
!! | CACGCTTATGTCGATTCTGC+CGG | + | chr8.2:55137086-55137105 | MS.gene42767:CDS | 50.0% |
!! | GGCCAATTTGTAACGGATGG+TGG | - | chr8.2:55135104-55135123 | None:intergenic | 50.0% |
AGCCTATCGTGCAGCCATGA+TGG | - | chr8.2:55134637-55134656 | None:intergenic | 55.0% | |
GCTGCAGACTAAGGCCAGTT+TGG | - | chr8.2:55136544-55136563 | None:intergenic | 55.0% | |
GTTCTATGACGGCGTCTTGG+TGG | - | chr8.2:55133108-55133127 | None:intergenic | 55.0% | |
TCGACCAGGTTGCTGATAGC+CGG | - | chr8.2:55137108-55137127 | None:intergenic | 55.0% | |
TTTGTAGAGGGACCCTGAGG+TGG | - | chr8.2:55135877-55135896 | None:intergenic | 55.0% | |
! | GCAGAAGGACGACCTCGTTT+TGG | + | chr8.2:55133311-55133330 | MS.gene42767:CDS | 55.0% |
! | GGTGGTGCCCTGACGTTTTA+TGG | - | chr8.2:55135086-55135105 | None:intergenic | 55.0% |
!! | GCAGTGTTGTTGATGGCGGA+TGG | - | chr8.2:55134708-55134727 | None:intergenic | 55.0% |
!! | GTCAAAGGGTTAGTCCCAGC+AGG | - | chr8.2:55135746-55135765 | None:intergenic | 55.0% |
!! | TTGGTGGCGCTTCCATCGAA+CGG | - | chr8.2:55133092-55133111 | None:intergenic | 55.0% |
ACGCTCTAACCGCCGTTCGA+TGG | + | chr8.2:55133077-55133096 | MS.gene42767:CDS | 60.0% | |
GGCTGCACGATAGGCTGCAA+TGG | + | chr8.2:55134641-55134660 | MS.gene42767:intron | 60.0% | |
TCTCCCACCACAATCCGCCA+TGG | + | chr8.2:55135142-55135161 | MS.gene42767:intron | 60.0% | |
TGAAGGACATGGGGACCTGC+AGG | + | chr8.2:55136654-55136673 | MS.gene42767:CDS | 60.0% | |
! | TCTGCCGGCTATCAGCAACC+TGG | + | chr8.2:55137101-55137120 | MS.gene42767:CDS | 60.0% |
!! | TGGCCATGGCGGATTGTGGT+GGG | - | chr8.2:55135148-55135167 | None:intergenic | 60.0% |
!! | TTGGCCATGGCGGATTGTGG+TGG | - | chr8.2:55135149-55135168 | None:intergenic | 60.0% |
GTAGAGGGACCCTGAGGTGG+CGG | - | chr8.2:55135874-55135893 | None:intergenic | 65.0% | |
GTGGCGCTTCCATCGAACGG+CGG | - | chr8.2:55133089-55133108 | None:intergenic | 65.0% | |
TAGAGGGACCCTGAGGTGGC+GGG | - | chr8.2:55135873-55135892 | None:intergenic | 65.0% | |
AGAGGGACCCTGAGGTGGCG+GGG | - | chr8.2:55135872-55135891 | None:intergenic | 70.0% | |
GCCAATCCCCCGCCACCTCA+GGG | + | chr8.2:55135862-55135881 | MS.gene42767:intron | 70.0% | |
TGCCAATCCCCCGCCACCTC+AGG | + | chr8.2:55135861-55135880 | MS.gene42767:intron | 70.0% | |
!! | ACCCTGAGGTGGCGGGGGAT+TGG | - | chr8.2:55135866-55135885 | None:intergenic | 70.0% |
! | GAGGGACCCTGAGGTGGCGG+GGG | - | chr8.2:55135871-55135890 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 55133010 | 55137175 | 55133010 | ID=MS.gene42767 |
chr8.2 | mRNA | 55133010 | 55137175 | 55133010 | ID=MS.gene42767.t1;Parent=MS.gene42767 |
chr8.2 | exon | 55133010 | 55133201 | 55133010 | ID=MS.gene42767.t1.exon1;Parent=MS.gene42767.t1 |
chr8.2 | CDS | 55133010 | 55133201 | 55133010 | ID=cds.MS.gene42767.t1;Parent=MS.gene42767.t1 |
chr8.2 | exon | 55133287 | 55133441 | 55133287 | ID=MS.gene42767.t1.exon2;Parent=MS.gene42767.t1 |
chr8.2 | CDS | 55133287 | 55133441 | 55133287 | ID=cds.MS.gene42767.t1;Parent=MS.gene42767.t1 |
chr8.2 | exon | 55135658 | 55135778 | 55135658 | ID=MS.gene42767.t1.exon3;Parent=MS.gene42767.t1 |
chr8.2 | CDS | 55135658 | 55135778 | 55135658 | ID=cds.MS.gene42767.t1;Parent=MS.gene42767.t1 |
chr8.2 | exon | 55136556 | 55136675 | 55136556 | ID=MS.gene42767.t1.exon4;Parent=MS.gene42767.t1 |
chr8.2 | CDS | 55136556 | 55136675 | 55136556 | ID=cds.MS.gene42767.t1;Parent=MS.gene42767.t1 |
chr8.2 | exon | 55136774 | 55136844 | 55136774 | ID=MS.gene42767.t1.exon5;Parent=MS.gene42767.t1 |
chr8.2 | CDS | 55136774 | 55136844 | 55136774 | ID=cds.MS.gene42767.t1;Parent=MS.gene42767.t1 |
chr8.2 | exon | 55136944 | 55137175 | 55136944 | ID=MS.gene42767.t1.exon6;Parent=MS.gene42767.t1 |
chr8.2 | CDS | 55136944 | 55137175 | 55136944 | ID=cds.MS.gene42767.t1;Parent=MS.gene42767.t1 |
Gene Sequence |
Protein sequence |