Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054699.t1 | XP_003614112.1 | 99.4 | 170 | 1 | 0 | 1 | 170 | 1 | 170 | 1.60E-87 | 332 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054699.t1 | Q5R723 | 45.1 | 162 | 73 | 6 | 9 | 170 | 5 | 150 | 1.5e-25 | 117.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054699.t1 | B7FJM0 | 99.4 | 170 | 1 | 0 | 1 | 170 | 1 | 170 | 1.1e-87 | 332.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054699 | MS.gene057234 | 0.821708 | 3.50E-53 | -1.69E-46 |
| MS.gene054699 | MS.gene058074 | 0.808633 | 2.81E-50 | -1.69E-46 |
| MS.gene054699 | MS.gene058238 | 0.807003 | 6.25E-50 | -1.69E-46 |
| MS.gene054699 | MS.gene060297 | 0.811332 | 7.38E-51 | -1.69E-46 |
| MS.gene054699 | MS.gene06837 | 0.825271 | 5.13E-54 | -1.69E-46 |
| MS.gene054699 | MS.gene22314 | 0.82344 | 1.38E-53 | -1.69E-46 |
| MS.gene054699 | MS.gene23954 | 0.808445 | 3.09E-50 | -1.69E-46 |
| MS.gene054699 | MS.gene29053 | -0.821095 | 4.85E-53 | -1.69E-46 |
| MS.gene054699 | MS.gene39213 | 0.808949 | 2.41E-50 | -1.69E-46 |
| MS.gene054699 | MS.gene42625 | 0.803655 | 3.14E-49 | -1.69E-46 |
| MS.gene054699 | MS.gene42767 | 0.801395 | 9.19E-49 | -1.69E-46 |
| MS.gene054699 | MS.gene61543 | 0.802091 | 6.61E-49 | -1.69E-46 |
| MS.gene054699 | MS.gene66408 | 0.803848 | 2.87E-49 | -1.69E-46 |
| MS.gene054699 | MS.gene86392 | 0.813536 | 2.44E-51 | -1.69E-46 |
| MS.gene054699 | MS.gene89027 | 0.807526 | 4.84E-50 | -1.69E-46 |
| MS.gene054699 | MS.gene89663 | 0.807929 | 3.98E-50 | -1.69E-46 |
| MS.gene054699 | MS.gene92557 | 0.817685 | 2.90E-52 | -1.69E-46 |
| MS.gene054699 | MS.gene93983 | 0.817474 | 3.24E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054699.t1 | MTR_5g044970 | 99.412 | 170 | 1 | 0 | 1 | 170 | 1 | 170 | 1.03e-123 | 345 |
| MS.gene054699.t1 | MTR_3g080130 | 45.238 | 84 | 45 | 1 | 10 | 93 | 36 | 118 | 8.13e-16 | 70.5 |
| MS.gene054699.t1 | MTR_7g013740 | 42.667 | 75 | 43 | 0 | 12 | 86 | 42 | 116 | 9.42e-16 | 70.5 |
| MS.gene054699.t1 | MTR_7g013730 | 44.000 | 75 | 42 | 0 | 12 | 86 | 42 | 116 | 3.22e-15 | 71.2 |
| MS.gene054699.t1 | MTR_4g109540 | 36.905 | 84 | 53 | 0 | 3 | 86 | 35 | 118 | 5.50e-14 | 68.2 |
| MS.gene054699.t1 | MTR_3g084040 | 34.884 | 86 | 55 | 1 | 1 | 86 | 27 | 111 | 2.54e-13 | 64.3 |
| MS.gene054699.t1 | MTR_4g109540 | 40.000 | 75 | 45 | 0 | 12 | 86 | 52 | 126 | 3.07e-12 | 63.2 |
| MS.gene054699.t1 | MTR_4g070140 | 42.667 | 75 | 43 | 0 | 12 | 86 | 10 | 84 | 3.42e-12 | 62.0 |
| MS.gene054699.t1 | MTR_1g054675 | 39.785 | 93 | 51 | 1 | 10 | 97 | 43 | 135 | 4.87e-12 | 62.0 |
| MS.gene054699.t1 | MTR_7g105260 | 37.179 | 78 | 49 | 0 | 12 | 89 | 34 | 111 | 2.04e-11 | 58.9 |
| MS.gene054699.t1 | MTR_3g025880 | 38.667 | 75 | 46 | 0 | 12 | 86 | 46 | 120 | 2.18e-11 | 61.6 |
| MS.gene054699.t1 | MTR_4g070080 | 41.333 | 75 | 44 | 0 | 12 | 86 | 8 | 82 | 2.63e-11 | 58.5 |
| MS.gene054699.t1 | MTR_4g070080 | 41.333 | 75 | 44 | 0 | 12 | 86 | 8 | 82 | 4.92e-11 | 58.5 |
| MS.gene054699.t1 | MTR_4g070190 | 40.000 | 75 | 45 | 0 | 12 | 86 | 10 | 84 | 5.13e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054699.t1 | AT1G13690 | 83.436 | 163 | 26 | 1 | 9 | 170 | 12 | 174 | 3.75e-99 | 283 |
| MS.gene054699.t1 | AT5G61030 | 45.333 | 75 | 41 | 0 | 12 | 86 | 42 | 116 | 1.02e-16 | 76.3 |
| MS.gene054699.t1 | AT5G61030 | 45.333 | 75 | 41 | 0 | 12 | 86 | 42 | 116 | 1.02e-16 | 76.3 |
| MS.gene054699.t1 | AT3G08000 | 43.373 | 83 | 46 | 1 | 12 | 94 | 43 | 124 | 1.58e-16 | 72.4 |
| MS.gene054699.t1 | AT4G39260 | 42.529 | 87 | 48 | 1 | 12 | 98 | 8 | 92 | 8.02e-15 | 66.6 |
| MS.gene054699.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 1.96e-13 | 63.9 |
| MS.gene054699.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.15e-13 | 64.3 |
| MS.gene054699.t1 | AT4G39260 | 44.000 | 75 | 42 | 0 | 12 | 86 | 8 | 82 | 2.36e-13 | 63.9 |
| MS.gene054699.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.59e-13 | 64.3 |
| MS.gene054699.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.86e-13 | 64.3 |
| MS.gene054699.t1 | AT1G74230 | 38.636 | 88 | 50 | 2 | 2 | 86 | 23 | 109 | 4.28e-13 | 65.9 |
| MS.gene054699.t1 | AT4G39260 | 44.000 | 75 | 42 | 0 | 12 | 86 | 8 | 82 | 5.70e-13 | 63.9 |
| MS.gene054699.t1 | AT3G23830 | 41.333 | 75 | 44 | 0 | 12 | 86 | 37 | 111 | 1.51e-12 | 62.0 |
| MS.gene054699.t1 | AT3G23830 | 41.333 | 75 | 44 | 0 | 12 | 86 | 37 | 111 | 1.51e-12 | 62.0 |
| MS.gene054699.t1 | AT2G21660 | 39.286 | 84 | 51 | 0 | 3 | 86 | 1 | 84 | 3.51e-12 | 61.6 |
| MS.gene054699.t1 | AT5G04280 | 37.209 | 86 | 54 | 0 | 4 | 89 | 1 | 86 | 3.77e-12 | 63.5 |
| MS.gene054699.t1 | AT2G21660 | 39.286 | 84 | 51 | 0 | 3 | 86 | 1 | 84 | 4.74e-12 | 61.6 |
| MS.gene054699.t1 | AT4G13860 | 38.889 | 72 | 44 | 0 | 12 | 83 | 5 | 76 | 1.91e-11 | 57.8 |
| MS.gene054699.t1 | AT1G60650 | 35.714 | 84 | 54 | 0 | 6 | 89 | 8 | 91 | 6.48e-11 | 59.7 |
| MS.gene054699.t1 | AT1G60650 | 35.714 | 84 | 54 | 0 | 6 | 89 | 8 | 91 | 6.48e-11 | 59.7 |
Find 46 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTTCCTGAAAAGATTA+AGG | 0.200027 | 5.3:+32621257 | MS.gene054699:CDS |
| TTCCGCCGCCATGGATAATA+TGG | 0.365330 | 5.3:+32621194 | MS.gene054699:CDS |
| TTTCTCTCCTTCTCGCTCTT+CGG | 0.386519 | 5.3:-32623142 | None:intergenic |
| AAAGATTAAGGGTGGTGAAC+AGG | 0.387720 | 5.3:+32621269 | MS.gene054699:CDS |
| CGGAAGCATCTTCCCTTTCA+AGG | 0.410203 | 5.3:-32621176 | None:intergenic |
| TTTGGGCGGATGCGGATACT+TGG | 0.419214 | 5.3:+32623022 | MS.gene054699:CDS |
| GCACTTCCTGAAAAGATTAA+GGG | 0.425176 | 5.3:+32621258 | MS.gene054699:CDS |
| ACGCAGAAGCATCGTTCCTT+CGG | 0.435942 | 5.3:+32621141 | MS.gene054699:CDS |
| CGTCGGTGGTTTAGCGGAAG+AGG | 0.445488 | 5.3:+32621041 | MS.gene054699:CDS |
| AGAGAATAAAGCTGCAATGC+TGG | 0.474659 | 5.3:+32623089 | MS.gene054699:CDS |
| TCTCTACGTCGGTGGTTTAG+CGG | 0.487229 | 5.3:+32621035 | MS.gene054699:CDS |
| GCTTCGTAACATTCCTTGAA+AGG | 0.488050 | 5.3:+32621163 | MS.gene054699:CDS |
| AAGATTAAGGGTGGTGAACA+GGG | 0.490520 | 5.3:+32621270 | MS.gene054699:CDS |
| TAAGGGTGGTGAACAGGGAT+GGG | 0.494356 | 5.3:+32621275 | MS.gene054699:CDS |
| CATACCCTTCGGAGATATCA+AGG | 0.495043 | 5.3:+32621092 | MS.gene054699:CDS |
| TGAGATCAAAGATGATCCTA+TGG | 0.502753 | 5.3:+32623173 | MS.gene054699:CDS |
| ATGGATGGTGCTGAACTCTA+TGG | 0.504782 | 5.3:+32621213 | MS.gene054699:CDS |
| AGAGCGAGAAGGAGAGAAAG+AGG | 0.507097 | 5.3:+32623146 | MS.gene054699:CDS |
| CTTCGTAACATTCCTTGAAA+GGG | 0.508373 | 5.3:+32621164 | MS.gene054699:CDS |
| CATGCGGCGTTCATACCCTT+CGG | 0.509469 | 5.3:+32621081 | MS.gene054699:CDS |
| TCTGCTTCAGCCCTTGCCAT+AGG | 0.518145 | 5.3:-32623189 | None:intergenic |
| TTAAGGGTGGTGAACAGGGA+TGG | 0.526053 | 5.3:+32621274 | MS.gene054699:CDS |
| CAACAATGGCGATGATGCAA+GGG | 0.542406 | 5.3:+32620998 | None:intergenic |
| GGAAGATGCTTCCGCCGCCA+TGG | 0.549924 | 5.3:+32621185 | MS.gene054699:CDS |
| GCAACAATGGCGATGATGCA+AGG | 0.550286 | 5.3:+32620997 | None:intergenic |
| CACGTCCTTGATATCTCCGA+AGG | 0.553071 | 5.3:-32621097 | None:intergenic |
| AGGGCTGAAGCAGAGGCTGT+TGG | 0.555462 | 5.3:+32623198 | MS.gene054699:CDS |
| ATCCATATTATCCATGGCGG+CGG | 0.566198 | 5.3:-32621196 | None:intergenic |
| CAAGTAGCCGAAGAGCGAGA+AGG | 0.575661 | 5.3:+32623135 | MS.gene054699:CDS |
| AGCACCATCCATATTATCCA+TGG | 0.577845 | 5.3:-32621202 | None:intergenic |
| AGGGTATGAACGCCGCATGA+AGG | 0.578831 | 5.3:-32621077 | None:intergenic |
| GCCGCCATGGATAATATGGA+TGG | 0.598509 | 5.3:+32621198 | MS.gene054699:CDS |
| TGGCTGCTGAAGAACTGCAC+AGG | 0.598798 | 5.3:+32623109 | MS.gene054699:CDS |
| TATGGCAAGGGCTGAAGCAG+AGG | 0.598806 | 5.3:+32623191 | MS.gene054699:CDS |
| TTCTGCGTTGCTTGATCGAG+CGG | 0.599883 | 5.3:-32621126 | None:intergenic |
| TGAGCGACAGCAACAAGAAG+AGG | 0.600628 | 5.3:+32623047 | MS.gene054699:CDS |
| CAAAGATGATCCTATGGCAA+GGG | 0.603906 | 5.3:+32623179 | MS.gene054699:CDS |
| TCAAAGATGATCCTATGGCA+AGG | 0.607783 | 5.3:+32623178 | MS.gene054699:CDS |
| AAGGAATGTTACGAAGCCGA+AGG | 0.640040 | 5.3:-32621157 | None:intergenic |
| ACGTCCTTGATATCTCCGAA+GGG | 0.665056 | 5.3:-32621096 | None:intergenic |
| AACAATGGCGATGATGCAAG+GGG | 0.670281 | 5.3:+32620999 | None:intergenic |
| CTTCCTGAAAAGATTAAGGG+TGG | 0.673751 | 5.3:+32621261 | MS.gene054699:CDS |
| GAACGAATCAATCCTTCATG+CGG | 0.674079 | 5.3:+32621065 | MS.gene054699:CDS |
| AAGAACACTCTCTACGTCGG+TGG | 0.677653 | 5.3:+32621027 | MS.gene054699:CDS |
| ACCATCCATATTATCCATGG+CGG | 0.687486 | 5.3:-32621199 | None:intergenic |
| CAAAAGAACACTCTCTACGT+CGG | 0.696745 | 5.3:+32621024 | MS.gene054699:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTTAAATTAATTTCTTT+AGG | - | chr5.3:32621748-32621767 | None:intergenic | 10.0% |
| !!! | ATTTTGAATTAGATTTTATT+TGG | + | chr5.3:32622149-32622168 | MS.gene054699:intron | 10.0% |
| !! | ATTAGTATGAGATAAATAAA+AGG | + | chr5.3:32621414-32621433 | MS.gene054699:intron | 15.0% |
| !!! | AAATTGAGTTTGAAATAAAT+AGG | + | chr5.3:32622189-32622208 | MS.gene054699:intron | 15.0% |
| !!! | ATATTAGTAGTTATTTTGTT+AGG | + | chr5.3:32622015-32622034 | MS.gene054699:intron | 15.0% |
| !!! | TAAGTTGAAAAATTAATACT+AGG | - | chr5.3:32622275-32622294 | None:intergenic | 15.0% |
| !! | AGATTACTAAACTTAAACAT+TGG | + | chr5.3:32621476-32621495 | MS.gene054699:intron | 20.0% |
| !! | CTTAATGATTTAATGTTGAA+TGG | + | chr5.3:32621437-32621456 | MS.gene054699:intron | 20.0% |
| !! | TGATTATGTGTTTATGTTTA+GGG | + | chr5.3:32621345-32621364 | MS.gene054699:intron | 20.0% |
| !! | TTGATAGAATTATGAATTTG+AGG | + | chr5.3:32621690-32621709 | MS.gene054699:intron | 20.0% |
| !! | TTGATTATGTGTTTATGTTT+AGG | + | chr5.3:32621344-32621363 | MS.gene054699:intron | 20.0% |
| !!! | AAAAAATTACAAGTTTTACC+TGG | + | chr5.3:32622878-32622897 | MS.gene054699:intron | 20.0% |
| !!! | GTTTAATTTTTTCACTTATG+TGG | + | chr5.3:32622973-32622992 | MS.gene054699:intron | 20.0% |
| !!! | TTTATTTGGTTAAGTTGATT+CGG | + | chr5.3:32622163-32622182 | MS.gene054699:intron | 20.0% |
| !!! | TTTGTTTCAATTTTCAGTTT+GGG | + | chr5.3:32623005-32623024 | MS.gene054699:intron | 20.0% |
| ! | AAGAGAATCAAAGAATTACT+TGG | - | chr5.3:32621309-32621328 | None:intergenic | 25.0% |
| ! | ACAAAAACAAGTTCGTTATT+AGG | + | chr5.3:32621916-32621935 | MS.gene054699:intron | 25.0% |
| ! | ACAACATTATTGCATATTGA+AGG | + | chr5.3:32622489-32622508 | MS.gene054699:intron | 25.0% |
| ! | AGACTTTCATATAACTCATA+TGG | + | chr5.3:32622077-32622096 | MS.gene054699:intron | 25.0% |
| ! | ATATGCAATAATGTTGTCTA+AGG | - | chr5.3:32622486-32622505 | None:intergenic | 25.0% |
| ! | ATGAGTTATATGAAAGTCTA+AGG | - | chr5.3:32622076-32622095 | None:intergenic | 25.0% |
| ! | TAAAATGATCTCAACTTTCT+TGG | + | chr5.3:32622951-32622970 | MS.gene054699:intron | 25.0% |
| ! | TAATTATCCATCATGAATGA+TGG | - | chr5.3:32622573-32622592 | None:intergenic | 25.0% |
| ! | TACTAAATAGTGTATTGCAA+AGG | - | chr5.3:32621773-32621792 | None:intergenic | 25.0% |
| ! | TATGAATTTGAGGAAATCAT+AGG | + | chr5.3:32621700-32621719 | MS.gene054699:intron | 25.0% |
| !! | ATCAGTTTTACTCCTTTTAA+AGG | + | chr5.3:32622727-32622746 | MS.gene054699:intron | 25.0% |
| !! | GAGTTTGAAATAAATAGGTT+TGG | + | chr5.3:32622194-32622213 | MS.gene054699:intron | 25.0% |
| !! | GTTTGTTTCAATTTTCAGTT+TGG | + | chr5.3:32623004-32623023 | MS.gene054699:intron | 25.0% |
| !!! | AAATTTGTTACGAAAACAGA+AGG | - | chr5.3:32621671-32621690 | None:intergenic | 25.0% |
| !!! | GTTTCTAAAGCTATATATGA+AGG | + | chr5.3:32622921-32622940 | MS.gene054699:intron | 25.0% |
| AATTATTCAACTCCATACCT+TGG | - | chr5.3:32622327-32622346 | None:intergenic | 30.0% | |
| ATCAGTATCACTCCTTTAAA+AGG | - | chr5.3:32622742-32622761 | None:intergenic | 30.0% | |
| ATGTATATGCACAATTATGC+TGG | + | chr5.3:32622622-32622641 | MS.gene054699:intron | 30.0% | |
| GAACTATATCATACAGACAA+TGG | - | chr5.3:32622599-32622618 | None:intergenic | 30.0% | |
| TAAGACATAGTCAATTCTGA+AGG | + | chr5.3:32622403-32622422 | MS.gene054699:intron | 30.0% | |
| TCAAAAAGCAACCAAAACAT+CGG | - | chr5.3:32622820-32622839 | None:intergenic | 30.0% | |
| TGTATATGCACAATTATGCT+GGG | + | chr5.3:32622623-32622642 | MS.gene054699:intron | 30.0% | |
| TTTACTCTCAAAGCAAGTAT+GGG | + | chr5.3:32622236-32622255 | MS.gene054699:intron | 30.0% | |
| ! | CTTTTATACGAGAAAAACCA+AGG | + | chr5.3:32622307-32622326 | MS.gene054699:intron | 30.0% |
| ! | TTTTACTCTCAAAGCAAGTA+TGG | + | chr5.3:32622235-32622254 | MS.gene054699:intron | 30.0% |
| !! | AAAAAGCATTCAACATAACC+AGG | - | chr5.3:32622670-32622689 | None:intergenic | 30.0% |
| !! | TCTTTGTTTATCCGATGTTT+TGG | + | chr5.3:32622806-32622825 | MS.gene054699:intron | 30.0% |
| AAACCATTGGGCTATTCATT+TGG | + | chr5.3:32622111-32622130 | MS.gene054699:intron | 35.0% | |
| AAACGTGATGAGTTTGCAAT+AGG | + | chr5.3:32621577-32621596 | MS.gene054699:intron | 35.0% | |
| AATAGCCCAATGGTTTATGT+TGG | - | chr5.3:32622107-32622126 | None:intergenic | 35.0% | |
| ACCATATTGAAAAGCAGCTA+AGG | - | chr5.3:32621631-32621650 | None:intergenic | 35.0% | |
| AGAGAAATGTTAGTAGCTAC+TGG | + | chr5.3:32622043-32622062 | MS.gene054699:intron | 35.0% | |
| ATACGAGAAAAACCAAGGTA+TGG | + | chr5.3:32622312-32622331 | MS.gene054699:intron | 35.0% | |
| ATAGCCCAATGGTTTATGTT+GGG | - | chr5.3:32622106-32622125 | None:intergenic | 35.0% | |
| CTTCGTAACATTCCTTGAAA+GGG | + | chr5.3:32621164-32621183 | MS.gene054699:CDS | 35.0% | |
| GAGAAATGTTAGTAGCTACT+GGG | + | chr5.3:32622044-32622063 | MS.gene054699:intron | 35.0% | |
| GAGAATTGCTTAGAATGTAG+AGG | + | chr5.3:32621938-32621957 | MS.gene054699:intron | 35.0% | |
| GCACTTCCTGAAAAGATTAA+GGG | + | chr5.3:32621258-32621277 | MS.gene054699:CDS | 35.0% | |
| GCATTTGCATTGTTGTCAAA+TGG | + | chr5.3:32621509-32621528 | MS.gene054699:intron | 35.0% | |
| GGACAAAACTTTAGATCAGT+AGG | + | chr5.3:32621598-32621617 | MS.gene054699:intron | 35.0% | |
| TAGGGTTTGAGGATTGAATT+AGG | + | chr5.3:32621363-32621382 | MS.gene054699:intron | 35.0% | |
| TGAGATCAAAGATGATCCTA+TGG | + | chr5.3:32623173-32623192 | MS.gene054699:CDS | 35.0% | |
| TGAGGAAATCATAGGTAGTT+AGG | + | chr5.3:32621708-32621727 | MS.gene054699:intron | 35.0% | |
| TGCACTTCCTGAAAAGATTA+AGG | + | chr5.3:32621257-32621276 | MS.gene054699:CDS | 35.0% | |
| TTACTCTCAAAGCAAGTATG+GGG | + | chr5.3:32622237-32622256 | MS.gene054699:intron | 35.0% | |
| TTGCTATCTTCGATTGACAA+TGG | + | chr5.3:32621855-32621874 | MS.gene054699:intron | 35.0% | |
| TTTCCAAATGAATAGCCCAA+TGG | - | chr5.3:32622117-32622136 | None:intergenic | 35.0% | |
| ! | ATACTGATGAAAGAGCATGA+TGG | + | chr5.3:32622754-32622773 | MS.gene054699:intron | 35.0% |
| ! | GTGTTTATGTTTAGGGTTTG+AGG | + | chr5.3:32621352-32621371 | MS.gene054699:intron | 35.0% |
| ! | GTTTCAATTTTCAGTTTGGG+CGG | + | chr5.3:32623008-32623027 | MS.gene054699:intron | 35.0% |
| ! | TGTTGTCAAATGGTGTCAAA+TGG | + | chr5.3:32621519-32621538 | MS.gene054699:intron | 35.0% |
| !! | GAATTTTTCAAATCTCAGCC+AGG | - | chr5.3:32622899-32622918 | None:intergenic | 35.0% |
| !! | TGAAACTGTTTTTCTCTTGC+AGG | + | chr5.3:32621989-32622008 | MS.gene054699:intron | 35.0% |
| !!! | TCCTTAGCTGCTTTTCAATA+TGG | + | chr5.3:32621627-32621646 | MS.gene054699:intron | 35.0% |
| AAAGATTAAGGGTGGTGAAC+AGG | + | chr5.3:32621269-32621288 | MS.gene054699:CDS | 40.0% | |
| AAGATTAAGGGTGGTGAACA+GGG | + | chr5.3:32621270-32621289 | MS.gene054699:CDS | 40.0% | |
| ACCATCCATATTATCCATGG+CGG | - | chr5.3:32621202-32621221 | None:intergenic | 40.0% | |
| AGAGAATAAAGCTGCAATGC+TGG | + | chr5.3:32623089-32623108 | MS.gene054699:CDS | 40.0% | |
| AGCACCATCCATATTATCCA+TGG | - | chr5.3:32621205-32621224 | None:intergenic | 40.0% | |
| AGCTATATCATTGTACGTCG+CGG | + | chr5.3:32621811-32621830 | MS.gene054699:intron | 40.0% | |
| CAAAAGAACACTCTCTACGT+CGG | + | chr5.3:32621024-32621043 | MS.gene054699:CDS | 40.0% | |
| CAAAGATGATCCTATGGCAA+GGG | + | chr5.3:32623179-32623198 | MS.gene054699:CDS | 40.0% | |
| CACATTCTGTCTCTCAACTA+TGG | - | chr5.3:32622780-32622799 | None:intergenic | 40.0% | |
| CATAGTTGAGAGACAGAATG+TGG | + | chr5.3:32622778-32622797 | MS.gene054699:intron | 40.0% | |
| CTATCTTCGATTGACAATGG+TGG | + | chr5.3:32621858-32621877 | MS.gene054699:intron | 40.0% | |
| CTTCCTGAAAAGATTAAGGG+TGG | + | chr5.3:32621261-32621280 | MS.gene054699:CDS | 40.0% | |
| GAACGAATCAATCCTTCATG+CGG | + | chr5.3:32621065-32621084 | MS.gene054699:CDS | 40.0% | |
| GCTTCGTAACATTCCTTGAA+AGG | + | chr5.3:32621163-32621182 | MS.gene054699:CDS | 40.0% | |
| GTGTCCCAACATAAACCATT+GGG | + | chr5.3:32622099-32622118 | MS.gene054699:intron | 40.0% | |
| TCAAAGATGATCCTATGGCA+AGG | + | chr5.3:32623178-32623197 | MS.gene054699:CDS | 40.0% | |
| ! | TCACCACCCTTAATCTTTTC+AGG | - | chr5.3:32621267-32621286 | None:intergenic | 40.0% |
| !!! | ATGGTGCAGAGGCATTTTAA+GGG | - | chr5.3:32622554-32622573 | None:intergenic | 40.0% |
| AAGGAATGTTACGAAGCCGA+AGG | - | chr5.3:32621160-32621179 | None:intergenic | 45.0% | |
| ACGTCCTTGATATCTCCGAA+GGG | - | chr5.3:32621099-32621118 | None:intergenic | 45.0% | |
| ATCCATATTATCCATGGCGG+CGG | - | chr5.3:32621199-32621218 | None:intergenic | 45.0% | |
| CATACCCTTCGGAGATATCA+AGG | + | chr5.3:32621092-32621111 | MS.gene054699:CDS | 45.0% | |
| CTCTGCACCATCATTCATGA+TGG | + | chr5.3:32622563-32622582 | MS.gene054699:intron | 45.0% | |
| GGTGTCCCAACATAAACCAT+TGG | + | chr5.3:32622098-32622117 | MS.gene054699:intron | 45.0% | |
| TTTCTCTCCTTCTCGCTCTT+CGG | - | chr5.3:32623145-32623164 | None:intergenic | 45.0% | |
| ! | ATGGATGGTGCTGAACTCTA+TGG | + | chr5.3:32621213-32621232 | MS.gene054699:CDS | 45.0% |
| ! | ATTTTCAGTTTGGGCGGATG+CGG | + | chr5.3:32623014-32623033 | MS.gene054699:intron | 45.0% |
| ! | CAGAGTATCCTTCCACTTAG+TGG | - | chr5.3:32621891-32621910 | None:intergenic | 45.0% |
| ! | CATCATGAATGATGGTGCAG+AGG | - | chr5.3:32622565-32622584 | None:intergenic | 45.0% |
| !!! | GATGGTGCAGAGGCATTTTA+AGG | - | chr5.3:32622555-32622574 | None:intergenic | 45.0% |
| AAGAACACTCTCTACGTCGG+TGG | + | chr5.3:32621027-32621046 | MS.gene054699:CDS | 50.0% | |
| AGAGCGAGAAGGAGAGAAAG+AGG | + | chr5.3:32623146-32623165 | MS.gene054699:CDS | 50.0% | |
| ATTATGCTGGGACACCGATG+CGG | + | chr5.3:32622635-32622654 | MS.gene054699:intron | 50.0% | |
| CACGTCCTTGATATCTCCGA+AGG | - | chr5.3:32621100-32621119 | None:intergenic | 50.0% | |
| CCAGGATTCTTAAGCCGCAT+CGG | - | chr5.3:32622652-32622671 | None:intergenic | 50.0% | |
| GCCGCCATGGATAATATGGA+TGG | + | chr5.3:32621198-32621217 | MS.gene054699:CDS | 50.0% | |
| GTCTCTTGCCACTAAGTGGA+AGG | + | chr5.3:32621880-32621899 | MS.gene054699:intron | 50.0% | |
| TAAGGGTGGTGAACAGGGAT+GGG | + | chr5.3:32621275-32621294 | MS.gene054699:CDS | 50.0% | |
| TCTCTACGTCGGTGGTTTAG+CGG | + | chr5.3:32621035-32621054 | MS.gene054699:CDS | 50.0% | |
| TGAGCGACAGCAACAAGAAG+AGG | + | chr5.3:32623047-32623066 | MS.gene054699:CDS | 50.0% | |
| TTAAGGGTGGTGAACAGGGA+TGG | + | chr5.3:32621274-32621293 | MS.gene054699:CDS | 50.0% | |
| TTCCGCCGCCATGGATAATA+TGG | + | chr5.3:32621194-32621213 | MS.gene054699:CDS | 50.0% | |
| TTCTGCGTTGCTTGATCGAG+CGG | - | chr5.3:32621129-32621148 | None:intergenic | 50.0% | |
| !! | ACGCAGAAGCATCGTTCCTT+CGG | + | chr5.3:32621141-32621160 | MS.gene054699:CDS | 50.0% |
| !! | CGGAAGCATCTTCCCTTTCA+AGG | - | chr5.3:32621179-32621198 | None:intergenic | 50.0% |
| AGGGTATGAACGCCGCATGA+AGG | - | chr5.3:32621080-32621099 | None:intergenic | 55.0% | |
| CAAGTAGCCGAAGAGCGAGA+AGG | + | chr5.3:32623135-32623154 | MS.gene054699:CDS | 55.0% | |
| CATGCGGCGTTCATACCCTT+CGG | + | chr5.3:32621081-32621100 | MS.gene054699:CDS | 55.0% | |
| CCGATGCGGCTTAAGAATCC+TGG | + | chr5.3:32622649-32622668 | MS.gene054699:intron | 55.0% | |
| GGTGGTCTCTTGCCACTAAG+TGG | + | chr5.3:32621876-32621895 | MS.gene054699:intron | 55.0% | |
| TATGGCAAGGGCTGAAGCAG+AGG | + | chr5.3:32623191-32623210 | MS.gene054699:CDS | 55.0% | |
| TCTGCTTCAGCCCTTGCCAT+AGG | - | chr5.3:32623192-32623211 | None:intergenic | 55.0% | |
| TGGCTGCTGAAGAACTGCAC+AGG | + | chr5.3:32623109-32623128 | MS.gene054699:CDS | 55.0% | |
| TTTGGGCGGATGCGGATACT+TGG | + | chr5.3:32623022-32623041 | MS.gene054699:CDS | 55.0% | |
| AGGGCTGAAGCAGAGGCTGT+TGG | + | chr5.3:32623198-32623217 | MS.gene054699:CDS | 60.0% | |
| CGTCGGTGGTTTAGCGGAAG+AGG | + | chr5.3:32621041-32621060 | MS.gene054699:CDS | 60.0% | |
| GGAAGATGCTTCCGCCGCCA+TGG | + | chr5.3:32621185-32621204 | MS.gene054699:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 32621003 | 32623227 | 32621003 | ID=MS.gene054699 |
| chr5.3 | mRNA | 32621003 | 32623227 | 32621003 | ID=MS.gene054699.t1;Parent=MS.gene054699 |
| chr5.3 | exon | 32621003 | 32621309 | 32621003 | ID=MS.gene054699.t1.exon1;Parent=MS.gene054699.t1 |
| chr5.3 | CDS | 32621003 | 32621309 | 32621003 | ID=cds.MS.gene054699.t1;Parent=MS.gene054699.t1 |
| chr5.3 | exon | 32623022 | 32623227 | 32623022 | ID=MS.gene054699.t1.exon2;Parent=MS.gene054699.t1 |
| chr5.3 | CDS | 32623022 | 32623227 | 32623022 | ID=cds.MS.gene054699.t1;Parent=MS.gene054699.t1 |
| Gene Sequence |
| Protein sequence |
