AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43302

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43302.t1 MTR_2g095750 97.266 512 13 1 1 512 1 511 0.0 1043
MS.gene43302.t1 MTR_2g095730 77.326 516 99 5 1 509 1 505 0.0 822
MS.gene43302.t1 MTR_2g095710 73.465 505 108 6 1 501 1 483 0.0 743
MS.gene43302.t1 MTR_4g057595 67.941 471 142 5 38 503 32 498 0.0 672
MS.gene43302.t1 MTR_1g094155 67.083 480 147 4 39 509 20 497 0.0 672
MS.gene43302.t1 MTR_4g057585 68.478 460 136 5 46 500 39 494 0.0 668
MS.gene43302.t1 MTR_4g057600 66.013 459 149 4 46 500 38 493 0.0 642
MS.gene43302.t1 MTR_1g050545 63.727 499 162 7 14 507 5 489 0.0 642
MS.gene43302.t1 MTR_4g057570 60.480 458 167 8 51 500 40 491 0.0 553
MS.gene43302.t1 MTR_5g097180 32.847 411 256 8 97 499 37 435 8.71e-67 223
MS.gene43302.t1 MTR_4g084710 32.360 411 258 7 97 499 39 437 3.22e-64 216
MS.gene43302.t1 MTR_3g079560 29.812 426 246 13 101 501 92 489 1.82e-52 185
MS.gene43302.t1 MTR_3g434850 30.505 436 246 17 101 503 44 455 8.36e-52 182
MS.gene43302.t1 MTR_3g079590 28.571 448 261 13 79 500 74 488 8.68e-51 181
MS.gene43302.t1 MTR_1g020090 30.166 421 250 11 98 500 101 495 1.18e-50 181
MS.gene43302.t1 MTR_1g021010 29.742 427 241 13 101 500 90 484 1.72e-50 180
MS.gene43302.t1 MTR_8g011350 28.051 467 254 13 101 501 45 495 2.13e-49 177
MS.gene43302.t1 MTR_3g079570 28.635 447 261 14 79 500 75 488 7.87e-49 176
MS.gene43302.t1 MTR_7g051430 27.349 479 263 14 86 498 33 492 1.09e-48 175
MS.gene43302.t1 MTR_3g079600 29.147 422 255 12 101 500 90 489 1.29e-47 172
MS.gene43302.t1 MTR_1g021020 29.187 418 254 11 101 500 92 485 2.00e-47 172
MS.gene43302.t1 MTR_3g079620 29.515 454 263 14 79 503 74 499 2.83e-47 171
MS.gene43302.t1 MTR_3g498755 27.790 457 279 16 72 499 8 442 9.28e-47 169
MS.gene43302.t1 MTR_2g081620 28.899 436 251 13 101 503 55 464 1.07e-46 169
MS.gene43302.t1 MTR_7g021130 29.466 431 248 18 103 499 46 454 1.10e-46 169
MS.gene43302.t1 MTR_2g063000 29.157 439 248 15 101 503 53 464 1.14e-46 169
MS.gene43302.t1 MTR_1g040370 30.147 408 233 15 103 499 46 412 1.16e-46 168
MS.gene43302.t1 MTR_3g034290 28.947 418 264 15 98 498 85 486 1.28e-46 169
MS.gene43302.t1 MTR_7g051430 34.944 269 153 5 86 349 33 284 5.78e-46 166
MS.gene43302.t1 MTR_2g449850 29.091 440 249 18 96 499 47 459 6.02e-46 167
MS.gene43302.t1 MTR_2g062990 28.972 428 261 13 101 503 54 463 6.70e-46 167
MS.gene43302.t1 MTR_2g018590 27.174 460 280 12 77 501 30 469 9.92e-46 166
MS.gene43302.t1 MTR_4g122960 27.009 448 262 13 99 503 51 476 1.32e-45 166
MS.gene43302.t1 MTR_8g099930 27.610 431 262 17 101 499 47 459 7.92e-45 164
MS.gene43302.t1 MTR_2g062980 28.878 419 273 12 101 503 54 463 9.45e-45 164
MS.gene43302.t1 MTR_0003s0560 28.009 432 258 14 93 498 79 483 1.06e-44 164
MS.gene43302.t1 MTR_4g122950 26.697 442 273 14 99 503 51 478 3.00e-44 163
MS.gene43302.t1 MTR_3g079630 27.876 452 267 14 79 500 74 496 4.94e-44 162
MS.gene43302.t1 MTR_5g072570 28.222 450 290 14 78 501 18 460 6.84e-44 161
MS.gene43302.t1 MTR_4g089155 26.411 443 271 12 93 499 59 482 1.30e-43 161
MS.gene43302.t1 MTR_4g075150 28.806 427 260 14 101 499 48 458 1.70e-43 160
MS.gene43302.t1 MTR_2g018600 25.977 435 271 12 103 501 50 469 3.74e-43 159
MS.gene43302.t1 MTR_4g075150 28.169 426 266 12 101 499 48 460 7.32e-43 159
MS.gene43302.t1 MTR_7g080180 36.398 261 142 7 101 349 42 290 1.20e-42 158
MS.gene43302.t1 MTR_4g021510 29.540 457 265 18 72 495 31 463 1.80e-42 157
MS.gene43302.t1 MTR_7g080180 36.782 261 141 8 101 349 42 290 2.03e-42 158
MS.gene43302.t1 MTR_8g011350 27.273 440 238 13 101 474 45 468 5.22e-42 157
MS.gene43302.t1 MTR_3g090130 27.650 434 267 14 98 501 39 455 1.24e-41 155
MS.gene43302.t1 MTR_2g012860 25.113 442 278 11 93 499 47 470 2.76e-41 154
MS.gene43302.t1 MTR_4g021530 28.744 414 246 14 115 496 69 465 2.85e-41 154
MS.gene43302.t1 MTR_3g045770 27.938 451 277 12 86 501 17 454 3.40e-41 154
MS.gene43302.t1 MTR_2g018630 27.660 423 268 12 103 499 53 463 4.41e-41 154
MS.gene43302.t1 MTR_1g095560 26.651 424 269 14 101 499 47 453 5.54e-41 153
MS.gene43302.t1 MTR_4g021535 27.700 426 235 13 115 496 65 461 2.02e-40 152
MS.gene43302.t1 MTR_7g013790 27.231 437 252 15 103 499 51 461 2.96e-40 151
MS.gene43302.t1 MTR_3g090150 27.739 429 285 12 93 501 39 462 3.85e-40 151
MS.gene43302.t1 MTR_2g012850 26.037 434 266 12 101 499 49 462 5.02e-40 151
MS.gene43302.t1 MTR_4g021490 27.729 458 274 17 72 496 32 465 1.18e-39 150
MS.gene43302.t1 MTR_4g021520 27.830 424 262 14 103 496 56 465 1.39e-39 150
MS.gene43302.t1 MTR_1g095540 25.587 426 271 12 101 499 47 453 5.99e-38 145
MS.gene43302.t1 MTR_3g034290 29.552 335 209 13 98 416 85 408 1.08e-37 143
MS.gene43302.t1 MTR_4g021500 27.053 414 253 13 115 496 504 900 1.32e-37 148
MS.gene43302.t1 MTR_4g021500 26.794 418 266 12 115 504 69 474 1.98e-37 147
MS.gene43302.t1 MTR_1g095560 26.174 447 274 16 101 499 47 485 1.55e-37 144
MS.gene43302.t1 MTR_4g021500 26.794 418 266 12 115 504 69 474 2.05e-37 147
MS.gene43302.t1 MTR_4g021500 27.068 399 254 14 115 496 504 882 4.06e-36 143
MS.gene43302.t1 MTR_3g100420 25.397 441 293 10 86 496 57 491 8.58e-37 142
MS.gene43302.t1 MTR_4g021520 28.165 387 235 13 103 460 56 428 4.41e-34 134
MS.gene43302.t1 MTR_0003s0560 30.859 256 158 7 93 345 79 318 1.77e-33 130
MS.gene43302.t1 MTR_2g063000 25.917 436 235 14 101 503 53 433 1.80e-33 132
MS.gene43302.t1 MTR_4g056520 27.059 425 255 12 114 497 44 454 2.42e-33 132
MS.gene43302.t1 MTR_2g009200 24.401 459 270 15 74 497 19 435 3.92e-30 122
MS.gene43302.t1 MTR_2g084530 26.339 448 280 13 84 492 11 447 1.30e-25 109
MS.gene43302.t1 MTR_2g018630 25.140 358 235 10 163 499 13 358 1.31e-23 102
MS.gene43302.t1 MTR_1g102130 25.114 438 230 21 103 499 107 487 2.88e-23 103
MS.gene43302.t1 MTR_4g021535 23.944 426 204 16 115 496 65 414 2.95e-21 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43302.t1 AT3G45010 66.267 501 159 5 12 505 8 505 0.0 691
MS.gene43302.t1 AT3G10410 62.992 508 165 6 5 502 4 498 0.0 677
MS.gene43302.t1 AT5G22980 62.450 498 176 5 13 503 5 498 0.0 644
MS.gene43302.t1 AT5G22960 62.874 167 42 2 95 261 28 174 1.91e-67 216
MS.gene43302.t1 AT1G15000 30.488 410 262 9 97 499 31 424 2.93e-54 189
MS.gene43302.t1 AT3G25420 28.541 466 253 13 101 501 44 494 1.34e-52 186
MS.gene43302.t1 AT3G12203 27.854 438 264 16 89 499 2 414 6.60e-52 182
MS.gene43302.t1 AT3G12203 27.460 437 267 14 89 499 23 435 1.79e-51 181
MS.gene43302.t1 AT1G73300 28.833 437 255 14 86 499 36 439 1.87e-51 181
MS.gene43302.t1 AT1G73300 28.833 437 255 14 86 499 36 439 1.87e-51 181
MS.gene43302.t1 AT2G22920 29.252 441 271 16 73 498 18 432 2.40e-50 178
MS.gene43302.t1 AT3G12203 28.607 402 244 15 116 499 1 377 2.60e-50 177
MS.gene43302.t1 AT2G22970 28.507 442 273 16 73 499 18 431 6.19e-50 177
MS.gene43302.t1 AT3G17180 28.894 443 254 15 98 499 50 472 1.13e-48 175
MS.gene43302.t1 AT1G73290 27.126 435 263 14 86 499 35 436 1.45e-48 174
MS.gene43302.t1 AT5G36180 28.345 441 254 15 85 499 35 439 1.85e-48 173
MS.gene43302.t1 AT4G12910 28.216 482 258 15 86 501 38 497 2.65e-48 174
MS.gene43302.t1 AT1G73280 27.689 437 262 15 85 499 35 439 3.46e-48 172
MS.gene43302.t1 AT5G23210 29.933 451 249 15 101 503 65 496 4.76e-48 174
MS.gene43302.t1 AT2G22980 28.315 445 267 18 73 499 18 428 7.37e-48 171
MS.gene43302.t1 AT3G52000 28.125 416 261 11 101 497 78 474 1.17e-47 172
MS.gene43302.t1 AT2G23010 27.578 446 276 15 73 499 18 435 5.39e-47 169
MS.gene43302.t1 AT1G73270 25.517 435 278 13 85 501 35 441 1.22e-46 168
MS.gene43302.t1 AT2G23010 27.578 446 276 15 73 499 18 435 1.50e-46 168
MS.gene43302.t1 AT1G73270 25.517 435 278 13 85 501 35 441 1.63e-46 168
MS.gene43302.t1 AT4G15100 28.306 431 265 14 101 498 58 477 1.71e-46 169
MS.gene43302.t1 AT3G10450 27.714 433 267 16 85 499 31 435 3.68e-46 167
MS.gene43302.t1 AT2G22920 29.703 404 245 14 73 462 18 396 5.90e-46 166
MS.gene43302.t1 AT1G73310 27.143 420 254 12 103 499 49 439 8.07e-46 166
MS.gene43302.t1 AT4G30810 28.046 435 264 13 99 504 50 464 1.03e-45 167
MS.gene43302.t1 AT3G10450 27.361 413 258 14 105 499 4 392 1.46e-45 164
MS.gene43302.t1 AT1G28110 28.037 428 260 16 101 498 45 454 1.70e-45 166
MS.gene43302.t1 AT1G28110 28.037 428 260 16 101 498 45 454 1.70e-45 166
MS.gene43302.t1 AT3G63470 29.356 419 243 15 101 492 95 487 1.71e-45 167
MS.gene43302.t1 AT4G12910 36.059 269 150 6 86 349 38 289 1.86e-45 166
MS.gene43302.t1 AT2G22970 28.810 420 257 15 73 477 18 410 2.19e-45 165
MS.gene43302.t1 AT2G22970 28.640 419 257 15 73 476 18 409 2.56e-45 164
MS.gene43302.t1 AT2G33530 28.474 439 248 18 101 499 47 459 3.88e-45 165
MS.gene43302.t1 AT1G33540 27.231 437 259 15 103 499 45 462 6.26e-45 164
MS.gene43302.t1 AT1G73290 28.610 374 220 11 86 439 35 381 6.84e-45 163
MS.gene43302.t1 AT3G52020 28.205 429 248 13 101 497 93 493 8.70e-45 165
MS.gene43302.t1 AT1G33540 27.126 435 258 15 105 499 4 419 1.99e-44 162
MS.gene43302.t1 AT5G08260 30.345 435 239 17 101 492 53 466 2.32e-44 163
MS.gene43302.t1 AT2G22980 28.182 440 264 18 73 494 18 423 2.46e-44 162
MS.gene43302.t1 AT2G22980 28.199 422 252 17 73 476 18 406 3.90e-44 161
MS.gene43302.t1 AT2G22990 26.139 417 264 12 103 499 39 431 7.60e-44 160
MS.gene43302.t1 AT2G35770 29.829 409 248 13 103 489 54 445 8.24e-44 161
MS.gene43302.t1 AT2G23000 26.923 442 266 13 90 499 19 435 4.80e-43 159
MS.gene43302.t1 AT2G23000 26.923 442 266 13 90 499 19 435 4.80e-43 159
MS.gene43302.t1 AT3G52010 27.934 426 268 12 92 497 73 479 4.82e-43 159
MS.gene43302.t1 AT1G61130 28.176 433 255 15 101 498 45 456 5.83e-43 159
MS.gene43302.t1 AT1G11080 26.984 441 260 12 101 498 64 485 1.52e-42 158
MS.gene43302.t1 AT3G12240 27.336 428 245 17 102 499 43 434 1.57e-42 157
MS.gene43302.t1 AT1G11080 26.984 441 260 12 101 498 64 485 1.61e-42 158
MS.gene43302.t1 AT3G12220 26.168 428 282 14 86 501 30 435 2.36e-42 157
MS.gene43302.t1 AT5G23210 30.790 367 196 12 101 421 65 419 2.76e-42 157
MS.gene43302.t1 AT2G24000 27.506 429 261 16 103 498 46 457 4.69e-42 156
MS.gene43302.t1 AT3G12230 27.295 414 263 12 102 499 42 433 8.34e-42 155
MS.gene43302.t1 AT3G12220 26.065 399 265 12 115 501 25 405 9.57e-42 154
MS.gene43302.t1 AT3G10450 27.561 410 252 15 85 476 31 413 1.18e-41 154
MS.gene43302.t1 AT1G73310 27.154 383 229 10 103 463 49 403 1.29e-41 154
MS.gene43302.t1 AT1G43780 28.111 434 256 17 103 499 53 467 1.46e-41 155
MS.gene43302.t1 AT1G73290 31.985 272 160 7 86 343 35 295 1.65e-41 151
MS.gene43302.t1 AT2G24010 28.235 425 255 15 103 499 46 448 1.66e-41 155
MS.gene43302.t1 AT5G42230 28.372 430 267 16 101 501 42 459 2.93e-41 154
MS.gene43302.t1 AT5G42230 28.372 430 267 16 101 501 42 459 2.93e-41 154
MS.gene43302.t1 AT3G07990 28.436 422 270 13 98 499 45 454 3.89e-41 154
MS.gene43302.t1 AT3G10450 27.179 390 243 13 105 476 4 370 5.37e-41 151
MS.gene43302.t1 AT2G12480 27.857 420 272 13 103 501 47 456 8.18e-41 153
MS.gene43302.t1 AT4G30610 25.116 430 279 12 99 499 44 459 2.92e-40 151
MS.gene43302.t1 AT2G12480 27.873 409 262 12 103 501 47 432 5.03e-40 150
MS.gene43302.t1 AT2G22990 26.506 415 256 13 86 478 26 413 5.04e-40 150
MS.gene43302.t1 AT2G22990 26.521 411 255 13 86 476 26 409 7.06e-40 150
MS.gene43302.t1 AT3G17180 29.306 389 220 13 98 446 50 423 1.54e-39 149
MS.gene43302.t1 AT2G12480 26.914 405 269 11 103 501 47 430 1.80e-39 149
MS.gene43302.t1 AT5G42240 26.168 428 279 14 101 501 46 463 2.95e-39 149
MS.gene43302.t1 AT2G22920 32.803 314 181 11 73 375 18 312 3.57e-39 145
MS.gene43302.t1 AT5G09640 25.160 469 285 17 73 499 19 463 4.32e-39 148
MS.gene43302.t1 AT2G12480 26.601 406 270 11 103 501 47 431 8.66e-39 147
MS.gene43302.t1 AT2G22970 32.177 317 184 11 73 378 18 314 2.74e-38 142
MS.gene43302.t1 AT5G23210 29.298 413 226 14 138 503 8 401 8.46e-38 143
MS.gene43302.t1 AT1G73280 34.855 241 137 5 85 309 35 271 8.48e-38 143
MS.gene43302.t1 AT5G23210 29.126 412 226 14 139 503 8 400 4.25e-37 141
MS.gene43302.t1 AT2G22990 24.700 417 261 13 103 499 39 422 4.35e-37 142
MS.gene43302.t1 AT3G02110 26.651 439 257 14 103 499 53 468 5.23e-37 142
MS.gene43302.t1 AT2G24010 27.273 440 255 17 103 499 46 463 6.97e-37 142
MS.gene43302.t1 AT2G35780 25.701 428 270 11 99 499 42 448 8.65e-37 142
MS.gene43302.t1 AT2G05850 26.376 436 287 15 78 497 62 479 1.41e-36 142
MS.gene43302.t1 AT2G22980 31.329 316 181 11 73 375 18 310 1.46e-36 139
MS.gene43302.t1 AT2G24010 26.797 459 258 19 103 499 17 459 1.55e-33 132
MS.gene43302.t1 AT3G12220 33.010 206 131 4 102 301 42 246 2.08e-32 128
MS.gene43302.t1 AT3G56540 42.553 141 78 3 101 239 93 232 1.40e-31 123
MS.gene43302.t1 AT5G23210 29.878 328 173 11 139 421 8 323 2.24e-31 125
MS.gene43302.t1 AT1G73280 25.424 354 219 11 163 499 12 337 2.36e-31 124
MS.gene43302.t1 AT5G36180 26.257 358 211 11 163 499 12 337 3.83e-31 123
MS.gene43302.t1 AT5G36180 26.257 358 211 11 163 499 12 337 3.83e-31 123
MS.gene43302.t1 AT2G24010 34.101 217 121 7 103 299 17 231 5.16e-28 115
MS.gene43302.t1 AT2G22990 23.824 340 220 10 175 499 2 317 1.35e-27 113
MS.gene43302.t1 AT1G73280 24.412 340 212 11 177 499 1 312 2.67e-27 112
MS.gene43302.t1 AT2G22990 23.824 340 220 10 175 499 2 317 3.52e-27 112
MS.gene43302.t1 AT5G36180 25.970 335 196 10 163 476 12 315 4.39e-27 112
MS.gene43302.t1 AT2G27920 25.118 422 259 14 114 492 45 452 6.09e-27 114
MS.gene43302.t1 AT5G36180 27.273 319 179 10 163 460 12 298 5.41e-26 108
MS.gene43302.t1 AT1G73310 24.843 318 194 8 163 463 12 301 5.90e-25 105
MS.gene43302.t1 AT2G22980 24.841 314 198 10 175 476 2 289 7.00e-25 105
MS.gene43302.t1 AT2G27920 24.416 385 240 13 145 492 10 380 1.19e-20 94.4
MS.gene43302.t1 AT2G27920 23.478 345 221 11 184 492 48 385 1.80e-15 78.6
MS.gene43302.t1 AT2G22920 21.481 270 183 9 239 498 3 253 2.23e-11 64.7

Find 119 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTCTCTGGTGTGTTTA+TGG 0.125077 2.1:-7873316 None:intergenic
ACAACATGGCATCATCTTTA+AGG 0.142828 2.1:+7873121 None:intergenic
TATGCCTTGTACTGAATTTC+CGG 0.228537 2.1:-7875329 None:intergenic
TCCCTTGTTTGGAATGAATA+TGG 0.250663 2.1:+7874169 MS.gene43302:CDS
CACAAGATTCTATAGCCTTT+TGG 0.276751 2.1:-7875427 None:intergenic
AGCTTTAGGTGTTGGGGACT+TGG 0.302455 2.1:+7875849 MS.gene43302:CDS
TTATCCTTGGAGAATTTAAA+AGG 0.303425 2.1:-7874139 None:intergenic
AGGATGACCCTGTTGTTATA+TGG 0.306709 2.1:+7874062 MS.gene43302:CDS
ATAAGAACTTGTCCCTTGTT+TGG 0.312379 2.1:+7874158 MS.gene43302:CDS
ATATCATACATTAATGTTGC+CGG 0.346161 2.1:-7875644 None:intergenic
AGACAATGGACTGATTAATA+AGG 0.347573 2.1:+7875367 MS.gene43302:CDS
CCTGTTGTTATATGGTTAAC+TGG 0.347839 2.1:+7874070 MS.gene43302:CDS
AACATCTGAAGTGCAGCTTT+TGG 0.363126 2.1:-7876702 None:intergenic
GTCTCCTACAACCCCGTATC+TGG 0.372478 2.1:+7876329 MS.gene43302:CDS
CACTTCAGATGTTAAAAGAT+TGG 0.373515 2.1:+7876712 MS.gene43302:CDS
TAAGGGAAGCTTTAGGTGTT+GGG 0.381875 2.1:+7875842 MS.gene43302:CDS
CCATTGTCTAATGCAAAATC+TGG 0.382981 2.1:-7875353 None:intergenic
TGATCTATATGATTTCTTGC+AGG 0.391482 2.1:+7874832 MS.gene43302:CDS
CCAGTTAACCATATAACAAC+AGG 0.402521 2.1:-7874070 None:intergenic
AGTATACAGTGCCATGTTGC+AGG 0.410064 2.1:+7875894 MS.gene43302:CDS
TTACAAAAGACAGACACATT+TGG 0.417560 2.1:-7873149 None:intergenic
GAGGAGAATGTCATTGTTTG+TGG 0.420601 2.1:-7873217 None:intergenic
AAGGGACAAGTTCTTATCCT+TGG 0.432855 2.1:-7874152 None:intergenic
GTAGACCAACCCACTGGAAC+AGG 0.438401 2.1:+7874752 MS.gene43302:CDS
GGCTGGTCACATGGTTCCTA+TGG 0.441603 2.1:+7876674 MS.gene43302:CDS
TTTGATTTGTTAGGCACTAA+AGG 0.444714 2.1:+7875556 MS.gene43302:intron
GGTGTGTTTATGGAATCTTT+TGG 0.445106 2.1:-7873306 None:intergenic
CTTTGAATCTCGAAACACTA+AGG 0.445707 2.1:+7874042 MS.gene43302:CDS
CTCATTTGGCAGGGAATTCG+AGG 0.446175 2.1:+7876262 MS.gene43302:intron
AAGAAGATCTCATATGCAAT+TGG 0.456279 2.1:+7875992 MS.gene43302:CDS
GAAAAGAAGTTCACTTTCCC+TGG 0.457022 2.1:+7873366 MS.gene43302:CDS
TCTTGAACATGAAGTCAGTA+AGG 0.459917 2.1:+7875824 MS.gene43302:CDS
ATCAAGGTGCTTGTGTATGC+TGG 0.464364 2.1:+7875967 MS.gene43302:CDS
CTTCACTATCAACCAGATAC+GGG 0.465787 2.1:-7876341 None:intergenic
TACCTTGCAGCTTGGGAATG+AGG 0.467604 2.1:-7873450 None:intergenic
CAAGCAGAAAATCTCATAAG+AGG 0.468099 2.1:+7873270 MS.gene43302:CDS
GGTGCTTCTGTTGAAGAACT+TGG 0.468257 2.1:+7873402 MS.gene43302:CDS
TCATTGTTTGTGGGATAAGC+TGG 0.472247 2.1:-7873207 None:intergenic
ATTCCTGCCCTTCTTGAGGA+TGG 0.475493 2.1:+7875943 MS.gene43302:CDS
TCAACCAGATACGGGGTTGT+AGG 0.477869 2.1:-7876333 None:intergenic
GTAAGGGAAGCTTTAGGTGT+TGG 0.480724 2.1:+7875841 MS.gene43302:CDS
CGGACCTCTTGCTTTCCTCA+AGG 0.484984 2.1:+7876386 MS.gene43302:CDS
GTTCAAGAATGTTTCCGCAT+TGG 0.488329 2.1:-7875809 None:intergenic
ACAGTGCCATGTTGCAGGAT+TGG 0.491110 2.1:+7875899 MS.gene43302:CDS
TCTTCACTATCAACCAGATA+CGG 0.495278 2.1:-7876342 None:intergenic
TGAAATATTTGATCAGATCA+TGG 0.497168 2.1:+7875615 MS.gene43302:CDS
CCTTCTTGAGGATGGAATCA+AGG 0.500451 2.1:+7875951 MS.gene43302:CDS
AAGTCAGTAAGGGAAGCTTT+AGG 0.501266 2.1:+7875835 MS.gene43302:CDS
AGGAATTCATATAAATCTAA+AGG 0.501724 2.1:+7875169 MS.gene43302:CDS
ACAAAATGAGGATCATTCTC+TGG 0.506628 2.1:-7873327 None:intergenic
CTTGTACTGAATTTCCGGAT+TGG 0.507308 2.1:-7875324 None:intergenic
CAAGGAAACAAGGCAAAAGA+AGG 0.507437 2.1:+7875149 MS.gene43302:CDS
GCAATTTCACTGCTGCATCC+TGG 0.508823 2.1:-7874097 None:intergenic
GGGTATTCCTGCCCTTCTTG+AGG 0.511069 2.1:+7875939 MS.gene43302:CDS
GGATGCAAGGGAAACTGATA+AGG 0.515489 2.1:+7876733 MS.gene43302:CDS
CCTTGATTCCATCCTCAAGA+AGG 0.523813 2.1:-7875951 None:intergenic
TGAACCCTAGATGCAAAAGC+TGG 0.524049 2.1:-7875125 None:intergenic
ATATGGTTAACTGGAGGGCC+AGG 0.526048 2.1:+7874079 MS.gene43302:CDS
GTTGTTCCCACGATGCCAAA+AGG 0.528378 2.1:+7875412 MS.gene43302:CDS
ATGTCCAGCGTATGATTCTC+CGG 0.529003 2.1:-7875096 None:intergenic
AAGATGATGCAGTTGAAGAG+AGG 0.530703 2.1:-7873236 None:intergenic
GAAGAACTTGGTCATCATGC+AGG 0.536316 2.1:+7873414 MS.gene43302:CDS
GTTGATGCCATGACATGGTC+AGG 0.537146 2.1:+7876288 MS.gene43302:CDS
TGAAACCTGTTCCAGTGGGT+TGG 0.537449 2.1:-7874757 None:intergenic
ATTCCATCCTCAAGAAGGGC+AGG 0.539828 2.1:-7875946 None:intergenic
ATGTTAAAAGATTGGATGCA+AGG 0.542286 2.1:+7876720 MS.gene43302:CDS
AATCATTCTTAGTGAACTGA+GGG 0.546470 2.1:-7875064 None:intergenic
CAATCCGGAAATTCAGTACA+AGG 0.549343 2.1:+7875325 MS.gene43302:CDS
GCACCAGAGTCAACAAAACC+AGG 0.549754 2.1:-7873384 None:intergenic
TTGTTTGGAATGAATATGGA+TGG 0.552020 2.1:+7874173 MS.gene43302:CDS
AGGAGAATGTCATTGTTTGT+GGG 0.552520 2.1:-7873216 None:intergenic
TGGTAACGGATTAACCAATC+CGG 0.554595 2.1:+7875310 MS.gene43302:CDS
GATCAGATCATGGACATAGC+CGG 0.558001 2.1:+7875625 MS.gene43302:CDS
CTGGTTGATAGTGAAGAAGC+AGG 0.565072 2.1:+7876348 MS.gene43302:CDS
GACATTAGAAAGCAATGTGT+GGG 0.565208 2.1:+7875766 MS.gene43302:CDS
TTGTTATATGGTTAACTGGA+GGG 0.566502 2.1:+7874074 MS.gene43302:CDS
TTTGCATCTAGGGTTCATCA+AGG 0.567295 2.1:+7875131 MS.gene43302:CDS
GATCTCATATGCAATTGGCT+TGG 0.569300 2.1:+7875997 MS.gene43302:CDS
TGTTAAAAGATTGGATGCAA+GGG 0.569319 2.1:+7876721 MS.gene43302:CDS
ATATTTCCATGAACAAAATG+AGG 0.569648 2.1:-7873339 None:intergenic
AAGGGAAGCTTTAGGTGTTG+GGG 0.573810 2.1:+7875843 MS.gene43302:CDS
GTTGTTATATGGTTAACTGG+AGG 0.581708 2.1:+7874073 MS.gene43302:CDS
CAAAAGACAGACACATTTGG+AGG 0.583029 2.1:-7873146 None:intergenic
TTTGGCAGGGAATTCGAGGT+GGG 0.585336 2.1:+7876266 MS.gene43302:intron
TGGGAACAACTTGTTGATGT+TGG 0.588848 2.1:-7875399 None:intergenic
GGTTAAAGAGGCTGGTCACA+TGG 0.594849 2.1:+7876665 MS.gene43302:intron
ATTTGGCAGGGAATTCGAGG+TGG 0.595991 2.1:+7876265 MS.gene43302:intron
AGAATGAATGTGAAATGAAG+AGG 0.598446 2.1:-7873179 None:intergenic
CTTGAACATGAAGTCAGTAA+GGG 0.603412 2.1:+7875825 MS.gene43302:CDS
ATCCATATTCATTCCAAACA+AGG 0.604369 2.1:-7874171 None:intergenic
TTCCTCATTCCCAAGCTGCA+AGG 0.607253 2.1:+7873448 MS.gene43302:CDS
TTTCATCCAATCCTGCAACA+TGG 0.613087 2.1:-7875905 None:intergenic
CTTGATTCCATCCTCAAGAA+GGG 0.613437 2.1:-7875950 None:intergenic
TGACATTAGAAAGCAATGTG+TGG 0.619542 2.1:+7875765 MS.gene43302:CDS
GATTTGTTAGGCACTAAAGG+TGG 0.621116 2.1:+7875559 MS.gene43302:intron
AAATCATTCTTAGTGAACTG+AGG 0.624376 2.1:-7875065 None:intergenic
CAAAAGGCTATAGAATCTTG+TGG 0.625610 2.1:+7875428 MS.gene43302:CDS
ATATTTGTAGACCAACCCAC+TGG 0.627039 2.1:+7874746 MS.gene43302:CDS
TAGCTGAAACCTGTTCCAGT+GGG 0.633323 2.1:-7874761 None:intergenic
ATAGCTGAAACCTGTTCCAG+TGG 0.637939 2.1:-7874762 None:intergenic
TCCATATTCATTCCAAACAA+GGG 0.638155 2.1:-7874170 None:intergenic
GCAGGAGTTCTGAAAAGCCA+CGG 0.638418 2.1:+7876366 MS.gene43302:CDS
TTCACTATCAACCAGATACG+GGG 0.643964 2.1:-7876340 None:intergenic
TCGAACGTCGCTATCATCAG+TGG 0.646032 2.1:-7874786 None:intergenic
TAGGGTTCATCAAGGAAACA+AGG 0.646926 2.1:+7875139 MS.gene43302:CDS
AAGGGAAACTGATAAGGACA+AGG 0.660416 2.1:+7876739 MS.gene43302:CDS
CACCAGAGTCAACAAAACCA+GGG 0.660712 2.1:-7873383 None:intergenic
AAACTGATAAGGACAAGGGG+AGG 0.667086 2.1:+7876744 MS.gene43302:CDS
AGGGAAACTGATAAGGACAA+GGG 0.667941 2.1:+7876740 MS.gene43302:CDS
GGTGGGTTGATGCCATGACA+TGG 0.669211 2.1:+7876283 MS.gene43302:CDS
TGAGGAAAGCAAGAGGTCCG+TGG 0.669417 2.1:-7876383 None:intergenic
TTGTTATGACTTCTCCAATG+CGG 0.671699 2.1:+7875795 MS.gene43302:CDS
TGTTTGGAATGAATATGGAT+GGG 0.672561 2.1:+7874174 MS.gene43302:CDS
GAATGAATATGGATGGGACA+TGG 0.683982 2.1:+7874180 MS.gene43302:CDS
ATTACCGGAGAATCATACGC+TGG 0.686475 2.1:+7875092 MS.gene43302:CDS
GGGAAACTGATAAGGACAAG+GGG 0.694048 2.1:+7876741 MS.gene43302:CDS
CAAACCTTGAGGAAAGCAAG+AGG 0.699262 2.1:-7876390 None:intergenic
GACGTTCGACATGATGAAGA+CGG 0.699400 2.1:+7874800 MS.gene43302:CDS
CAGTTAACCATATAACAACA+GGG 0.704037 2.1:-7874069 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAGAGAATAATTTAAT+AGG - chr2.1:7874208-7874227 None:intergenic 15.0%
!! ATAAAATAGAATGAAATATG+AGG + chr2.1:7873514-7873533 MS.gene43302:intron 15.0%
!! GATTATAAGTTTGATTAATT+TGG + chr2.1:7876175-7876194 MS.gene43302:intron 15.0%
!! GCAAAGAATTTATAAAAAAA+TGG + chr2.1:7873652-7873671 MS.gene43302:intron 15.0%
!! TATAAAAAAATGGAATAGTT+TGG + chr2.1:7873662-7873681 MS.gene43302:intron 15.0%
!! TCTTTAACCTATTAAAAAAA+CGG - chr2.1:7876654-7876673 None:intergenic 15.0%
!!! AAAGTGTTTTTCTTAAAATT+CGG - chr2.1:7873869-7873888 None:intergenic 15.0%
!!! AAGAATGATTTTTATATTAC+CGG + chr2.1:7875077-7875096 MS.gene43302:CDS 15.0%
!!! CATTCTATTTTATCTTATTT+TGG - chr2.1:7873507-7873526 None:intergenic 15.0%
!!! CTCTATTGATTTATATTAAT+TGG + chr2.1:7873929-7873948 MS.gene43302:intron 15.0%
!!! TTAGCTATTTTTACAATAAA+AGG - chr2.1:7874463-7874482 None:intergenic 15.0%
!!! TTTGATCTAGTTTAATTTAT+TGG + chr2.1:7873699-7873718 MS.gene43302:intron 15.0%
!! AAGGAAAAATAACAAGTAAA+TGG - chr2.1:7875516-7875535 None:intergenic 20.0%
!! AATTATTCACTTGTATTAAG+TGG + chr2.1:7874926-7874945 MS.gene43302:intron 20.0%
!! AGGAATTCATATAAATCTAA+AGG + chr2.1:7875169-7875188 MS.gene43302:CDS 20.0%
!! CAAAATAGAATACACAAATA+TGG + chr2.1:7876216-7876235 MS.gene43302:intron 20.0%
!! CAGAATAAAAATATAGTTCT+TGG + chr2.1:7873590-7873609 MS.gene43302:intron 20.0%
!! GTAAACCTTTATAATAAACA+GGG + chr2.1:7875278-7875297 MS.gene43302:intron 20.0%
!! GTATGATATCAAAAAAGAAA+AGG + chr2.1:7875658-7875677 MS.gene43302:intron 20.0%
!! TGTAAACCTTTATAATAAAC+AGG + chr2.1:7875277-7875296 MS.gene43302:intron 20.0%
!! TGTACACTATATTTATGTAT+AGG + chr2.1:7875213-7875232 MS.gene43302:intron 20.0%
!! TTATAAATGTGATTCTCATT+TGG + chr2.1:7876248-7876267 MS.gene43302:intron 20.0%
!! TTTCATAAGCTATATTAGTT+TGG - chr2.1:7874423-7874442 None:intergenic 20.0%
!!! ATTGCTATGTTTTATGAAAA+TGG + chr2.1:7874115-7874134 MS.gene43302:CDS 20.0%
!!! GTTTTTTTAATAGGTTAAAG+AGG + chr2.1:7876653-7876672 MS.gene43302:intron 20.0%
!!! TAGTTTGTATTTGATTTGTT+AGG + chr2.1:7875547-7875566 MS.gene43302:intron 20.0%
!!! TTAACTTCCGTTTTTTTAAT+AGG + chr2.1:7876644-7876663 MS.gene43302:intron 20.0%
!!! TTAAGTTGTTTATCCAAATA+TGG + chr2.1:7874528-7874547 MS.gene43302:intron 20.0%
!!! TTGTCATCAAATTCTTATTT+TGG - chr2.1:7873909-7873928 None:intergenic 20.0%
! ACAAACAAGAAAAAATGCAT+TGG - chr2.1:7874712-7874731 None:intergenic 25.0%
! ACAAACTATTAGTGTCAATA+AGG - chr2.1:7875535-7875554 None:intergenic 25.0%
! ACAACTTATGTCATATTTGT+AGG + chr2.1:7874346-7874365 MS.gene43302:intron 25.0%
! ACATAAGCATTTATATGACA+AGG + chr2.1:7874484-7874503 MS.gene43302:intron 25.0%
! ATATCATACATTAATGTTGC+CGG - chr2.1:7875647-7875666 None:intergenic 25.0%
! ATATTTCCATGAACAAAATG+AGG - chr2.1:7873342-7873361 None:intergenic 25.0%
! CAAAACCCTGTTTATTATAA+AGG - chr2.1:7875286-7875305 None:intergenic 25.0%
! CATAAGCATTTATATGACAA+GGG + chr2.1:7874485-7874504 MS.gene43302:intron 25.0%
! TATATGAGTAAGAACTAAAG+TGG - chr2.1:7874241-7874260 None:intergenic 25.0%
! TGAAATATTTGATCAGATCA+TGG + chr2.1:7875615-7875634 MS.gene43302:CDS 25.0%
! TTATCCTTGGAGAATTTAAA+AGG - chr2.1:7874142-7874161 None:intergenic 25.0%
!! AATTTGGAACCAAAATTTCT+TGG + chr2.1:7876191-7876210 MS.gene43302:intron 25.0%
!! AGATTTTCTGCTTGTAATTT+TGG - chr2.1:7873264-7873283 None:intergenic 25.0%
!! ATTTGGAACCAAAATTTCTT+GGG + chr2.1:7876192-7876211 MS.gene43302:intron 25.0%
!! CATGACTATCTTTGAATTTT+AGG + chr2.1:7873481-7873500 MS.gene43302:intron 25.0%
!! GATTTTCTGCTTGTAATTTT+GGG - chr2.1:7873263-7873282 None:intergenic 25.0%
!! TCTTAAAATTCGGTCTATTT+TGG - chr2.1:7873859-7873878 None:intergenic 25.0%
!! TTTTGTTCATGGAAATATTG+TGG + chr2.1:7873344-7873363 MS.gene43302:CDS 25.0%
!!! AATATGAGGTAAGTTTTTTG+TGG + chr2.1:7873528-7873547 MS.gene43302:intron 25.0%
!!! AGACTGTTTGAGAATTTTTT+TGG + chr2.1:7874321-7874340 MS.gene43302:intron 25.0%
!!! ATGCATTTTTTCTTGTTTGT+AGG + chr2.1:7874712-7874731 MS.gene43302:intron 25.0%
!!! TATTTGTAGGTTTTTTTGTG+AGG + chr2.1:7874359-7874378 MS.gene43302:intron 25.0%
!!! TATTTTGACCCAAGAAATTT+TGG - chr2.1:7876203-7876222 None:intergenic 25.0%
!!! TTGGAGTTTAATTTTAGAAG+TGG - chr2.1:7873840-7873859 None:intergenic 25.0%
AAATCATTCTTAGTGAACTG+AGG - chr2.1:7875068-7875087 None:intergenic 30.0%
AAGAAGATCTCATATGCAAT+TGG + chr2.1:7875992-7876011 MS.gene43302:CDS 30.0%
AAGTAAATGGCACAACAAAT+TGG - chr2.1:7875503-7875522 None:intergenic 30.0%
AATCATTCTTAGTGAACTGA+GGG - chr2.1:7875067-7875086 None:intergenic 30.0%
AGAATGAATGTGAAATGAAG+AGG - chr2.1:7873182-7873201 None:intergenic 30.0%
ATCCATATTCATTCCAAACA+AGG - chr2.1:7874174-7874193 None:intergenic 30.0%
ATGTTAAAAGATTGGATGCA+AGG + chr2.1:7876720-7876739 MS.gene43302:CDS 30.0%
CACTTCAGATGTTAAAAGAT+TGG + chr2.1:7876712-7876731 MS.gene43302:CDS 30.0%
CAGTTAACCATATAACAACA+GGG - chr2.1:7874072-7874091 None:intergenic 30.0%
CGACATAACAAATTGTTCAA+TGG - chr2.1:7874000-7874019 None:intergenic 30.0%
GTCAGGTCAAAAAGAATTTA+AGG + chr2.1:7876305-7876324 MS.gene43302:CDS 30.0%
TAATCAATGTGCTTCACTTA+AGG - chr2.1:7876160-7876179 None:intergenic 30.0%
TAATGTCATAGTACTGCATT+AGG - chr2.1:7875753-7875772 None:intergenic 30.0%
TCCATATTCATTCCAAACAA+GGG - chr2.1:7874173-7874192 None:intergenic 30.0%
TCTCTAAATTTCACAATGAC+AGG + chr2.1:7875025-7875044 MS.gene43302:intron 30.0%
TCTTGCAATAATGACATGTT+TGG + chr2.1:7874267-7874286 MS.gene43302:intron 30.0%
TGATCTATATGATTTCTTGC+AGG + chr2.1:7874832-7874851 MS.gene43302:CDS 30.0%
TGGATGAAAAATCTAGAAGT+GGG + chr2.1:7875919-7875938 MS.gene43302:CDS 30.0%
TGTTAAAAGATTGGATGCAA+GGG + chr2.1:7876721-7876740 MS.gene43302:CDS 30.0%
TTACAAAAGACAGACACATT+TGG - chr2.1:7873152-7873171 None:intergenic 30.0%
TTGGATGAAAAATCTAGAAG+TGG + chr2.1:7875918-7875937 MS.gene43302:CDS 30.0%
TTGTTATATGGTTAACTGGA+GGG + chr2.1:7874074-7874093 MS.gene43302:CDS 30.0%
! AATGATCCTCATTTTGTTCA+TGG + chr2.1:7873333-7873352 MS.gene43302:CDS 30.0%
! CTTCAAACAAAAAGTGTGTT+TGG + chr2.1:7876468-7876487 MS.gene43302:intron 30.0%
! TCTAATCAGAATTTGAAGTC+CGG + chr2.1:7876116-7876135 MS.gene43302:intron 30.0%
! TGTTTGGAATGAATATGGAT+GGG + chr2.1:7874174-7874193 MS.gene43302:CDS 30.0%
! TTGTTTGGAATGAATATGGA+TGG + chr2.1:7874173-7874192 MS.gene43302:CDS 30.0%
! TTTTAATAGGTTAAAGAGGC+TGG + chr2.1:7876657-7876676 MS.gene43302:intron 30.0%
!! AATAAACAGGGTTTTGCTAT+TGG + chr2.1:7875290-7875309 MS.gene43302:intron 30.0%
!! AGACAATGGACTGATTAATA+AGG + chr2.1:7875367-7875386 MS.gene43302:CDS 30.0%
!! TGATGTTTACATGTCACTTT+CGG + chr2.1:7876565-7876584 MS.gene43302:intron 30.0%
!! TTTGATTTGTTAGGCACTAA+AGG + chr2.1:7875556-7875575 MS.gene43302:intron 30.0%
!!! TTTTAAGTTTGTTCCCTTCT+CGG + chr2.1:7875458-7875477 MS.gene43302:intron 30.0%
AAATGTGATTCTCATTTGGC+AGG + chr2.1:7876252-7876271 MS.gene43302:intron 35.0%
AATGTGATTCTCATTTGGCA+GGG + chr2.1:7876253-7876272 MS.gene43302:intron 35.0%
ACAAAATGAGGATCATTCTC+TGG - chr2.1:7873330-7873349 None:intergenic 35.0%
AGGAGAATGTCATTGTTTGT+GGG - chr2.1:7873219-7873238 None:intergenic 35.0%
AGTAATATGTGTTAGTCCTC+CGG + chr2.1:7876033-7876052 MS.gene43302:intron 35.0%
ATAAGAACTTGTCCCTTGTT+TGG + chr2.1:7874158-7874177 MS.gene43302:CDS 35.0%
ATCATTCTCTGGTGTGTTTA+TGG - chr2.1:7873319-7873338 None:intergenic 35.0%
ATCCTTAAACACAAACCTTG+AGG - chr2.1:7876404-7876423 None:intergenic 35.0%
CAAAAGGCTATAGAATCTTG+TGG + chr2.1:7875428-7875447 MS.gene43302:CDS 35.0%
CAAGCAGAAAATCTCATAAG+AGG + chr2.1:7873270-7873289 MS.gene43302:CDS 35.0%
CCAGTTAACCATATAACAAC+AGG - chr2.1:7874073-7874092 None:intergenic 35.0%
CCATTGTCTAATGCAAAATC+TGG - chr2.1:7875356-7875375 None:intergenic 35.0%
CCTGTTGTTATATGGTTAAC+TGG + chr2.1:7874070-7874089 MS.gene43302:CDS 35.0%
CTTGAACATGAAGTCAGTAA+GGG + chr2.1:7875825-7875844 MS.gene43302:CDS 35.0%
CTTTGAATCTCGAAACACTA+AGG + chr2.1:7874042-7874061 MS.gene43302:CDS 35.0%
GACATTAGAAAGCAATGTGT+GGG + chr2.1:7875766-7875785 MS.gene43302:CDS 35.0%
GACGAATTATTTAAGAGAGC+CGG - chr2.1:7876138-7876157 None:intergenic 35.0%
GTTGTTATATGGTTAACTGG+AGG + chr2.1:7874073-7874092 MS.gene43302:CDS 35.0%
TATGCCTTGTACTGAATTTC+CGG - chr2.1:7875332-7875351 None:intergenic 35.0%
TCTTCACTATCAACCAGATA+CGG - chr2.1:7876345-7876364 None:intergenic 35.0%
TCTTGAACATGAAGTCAGTA+AGG + chr2.1:7875824-7875843 MS.gene43302:CDS 35.0%
TGACATTAGAAAGCAATGTG+TGG + chr2.1:7875765-7875784 MS.gene43302:CDS 35.0%
TGATTGAACATAGCACAACA+GGG - chr2.1:7874573-7874592 None:intergenic 35.0%
TTCCTCAAGGTTTGTGTTTA+AGG + chr2.1:7876399-7876418 MS.gene43302:intron 35.0%
TTGATTGAACATAGCACAAC+AGG - chr2.1:7874574-7874593 None:intergenic 35.0%
TTGTTATGACTTCTCCAATG+CGG + chr2.1:7875795-7875814 MS.gene43302:CDS 35.0%
TTTCAGTTTATGACCGAGAA+GGG - chr2.1:7875474-7875493 None:intergenic 35.0%
! ACAATGACAGGCATTTTTCA+AGG + chr2.1:7875037-7875056 MS.gene43302:intron 35.0%
! ATCTATTTTACCTTGCAGCT+TGG - chr2.1:7873461-7873480 None:intergenic 35.0%
! CACAAGATTCTATAGCCTTT+TGG - chr2.1:7875430-7875449 None:intergenic 35.0%
! CCAGATTTTGCATTAGACAA+TGG + chr2.1:7875353-7875372 MS.gene43302:CDS 35.0%
! CTTGATTGTTTGAGTTTGTG+TGG - chr2.1:7874650-7874669 None:intergenic 35.0%
! GGTGTGTTTATGGAATCTTT+TGG - chr2.1:7873309-7873328 None:intergenic 35.0%
! TCCCTTGTTTGGAATGAATA+TGG + chr2.1:7874169-7874188 MS.gene43302:CDS 35.0%
! TCTATTTTACCTTGCAGCTT+GGG - chr2.1:7873460-7873479 None:intergenic 35.0%
! TGGTCCTTTTAAATTCTCCA+AGG + chr2.1:7874135-7874154 MS.gene43302:CDS 35.0%
! TTTTCAGTTTATGACCGAGA+AGG - chr2.1:7875475-7875494 None:intergenic 35.0%
!! CAATTTGTTATGTCGATTGC+AGG + chr2.1:7874005-7874024 MS.gene43302:intron 35.0%
AAGATGATGCAGTTGAAGAG+AGG - chr2.1:7873239-7873258 None:intergenic 40.0%
AAGGGAAACTGATAAGGACA+AGG + chr2.1:7876739-7876758 MS.gene43302:CDS 40.0%
AAGGGACAAGTTCTTATCCT+TGG - chr2.1:7874155-7874174 None:intergenic 40.0%
AAGTCAGTAAGGGAAGCTTT+AGG + chr2.1:7875835-7875854 MS.gene43302:CDS 40.0%
AGCACAACAGGGAAAATCTA+GGG - chr2.1:7874562-7874581 None:intergenic 40.0%
AGGATGACCCTGTTGTTATA+TGG + chr2.1:7874062-7874081 MS.gene43302:CDS 40.0%
AGGGAAACTGATAAGGACAA+GGG + chr2.1:7876740-7876759 MS.gene43302:CDS 40.0%
ATATTTGTAGACCAACCCAC+TGG + chr2.1:7874746-7874765 MS.gene43302:CDS 40.0%
CAAAAGACAGACACATTTGG+AGG - chr2.1:7873149-7873168 None:intergenic 40.0%
CAAGGAAACAAGGCAAAAGA+AGG + chr2.1:7875149-7875168 MS.gene43302:CDS 40.0%
CAATCCGGAAATTCAGTACA+AGG + chr2.1:7875325-7875344 MS.gene43302:CDS 40.0%
CTTCACTATCAACCAGATAC+GGG - chr2.1:7876344-7876363 None:intergenic 40.0%
CTTGATTCCATCCTCAAGAA+GGG - chr2.1:7875953-7875972 None:intergenic 40.0%
CTTGTACTGAATTTCCGGAT+TGG - chr2.1:7875327-7875346 None:intergenic 40.0%
GAAAAGAAGTTCACTTTCCC+TGG + chr2.1:7873366-7873385 MS.gene43302:CDS 40.0%
GAATGAATATGGATGGGACA+TGG + chr2.1:7874180-7874199 MS.gene43302:CDS 40.0%
GAGGAGAATGTCATTGTTTG+TGG - chr2.1:7873220-7873239 None:intergenic 40.0%
GATCTCATATGCAATTGGCT+TGG + chr2.1:7875997-7876016 MS.gene43302:CDS 40.0%
GTTCAAGAATGTTTCCGCAT+TGG - chr2.1:7875812-7875831 None:intergenic 40.0%
TAGCACAACAGGGAAAATCT+AGG - chr2.1:7874563-7874582 None:intergenic 40.0%
TAGGGTTCATCAAGGAAACA+AGG + chr2.1:7875139-7875158 MS.gene43302:CDS 40.0%
TCATTGTTTGTGGGATAAGC+TGG - chr2.1:7873210-7873229 None:intergenic 40.0%
TTCACTATCAACCAGATACG+GGG - chr2.1:7876343-7876362 None:intergenic 40.0%
TTTCATCCAATCCTGCAACA+TGG - chr2.1:7875908-7875927 None:intergenic 40.0%
! ACATTCCAGCTTTTGCATCT+AGG + chr2.1:7875120-7875139 MS.gene43302:CDS 40.0%
! CATTCCAGCTTTTGCATCTA+GGG + chr2.1:7875121-7875140 MS.gene43302:CDS 40.0%
! TTGTTTGAGTTTGTGTGGAC+TGG - chr2.1:7874645-7874664 None:intergenic 40.0%
! TTTGCATCTAGGGTTCATCA+AGG + chr2.1:7875131-7875150 MS.gene43302:CDS 40.0%
! TTTTTGACCTGACCATGTCA+TGG - chr2.1:7876298-7876317 None:intergenic 40.0%
!! AACATCTGAAGTGCAGCTTT+TGG - chr2.1:7876705-7876724 None:intergenic 40.0%
!! GATTTGTTAGGCACTAAAGG+TGG + chr2.1:7875559-7875578 MS.gene43302:intron 40.0%
!! TAAGGGAAGCTTTAGGTGTT+GGG + chr2.1:7875842-7875861 MS.gene43302:CDS 40.0%
!! TGGGAACAACTTGTTGATGT+TGG - chr2.1:7875402-7875421 None:intergenic 40.0%
!! TGGTAACGGATTAACCAATC+CGG + chr2.1:7875310-7875329 MS.gene43302:CDS 40.0%
!!! CAGGGTTTTGCTATTGGTAA+CGG + chr2.1:7875296-7875315 MS.gene43302:intron 40.0%
AAACTGATAAGGACAAGGGG+AGG + chr2.1:7876744-7876763 MS.gene43302:CDS 45.0%
AGGGAAAATCTAGGGGGTTT+AGG - chr2.1:7874554-7874573 None:intergenic 45.0%
AGTATACAGTGCCATGTTGC+AGG + chr2.1:7875894-7875913 MS.gene43302:CDS 45.0%
ATAGCTGAAACCTGTTCCAG+TGG - chr2.1:7874765-7874784 None:intergenic 45.0%
ATGTCCAGCGTATGATTCTC+CGG - chr2.1:7875099-7875118 None:intergenic 45.0%
ATTACCGGAGAATCATACGC+TGG + chr2.1:7875092-7875111 MS.gene43302:CDS 45.0%
CAAACCTTGAGGAAAGCAAG+AGG - chr2.1:7876393-7876412 None:intergenic 45.0%
CACAACAGGGAAAATCTAGG+GGG - chr2.1:7874560-7874579 None:intergenic 45.0%
CACCAGAGTCAACAAAACCA+GGG - chr2.1:7873386-7873405 None:intergenic 45.0%
CCTTCTTGAGGATGGAATCA+AGG + chr2.1:7875951-7875970 MS.gene43302:CDS 45.0%
CCTTGATTCCATCCTCAAGA+AGG - chr2.1:7875954-7875973 None:intergenic 45.0%
GAAGAACTTGGTCATCATGC+AGG + chr2.1:7873414-7873433 MS.gene43302:CDS 45.0%
GACGTTCGACATGATGAAGA+CGG + chr2.1:7874800-7874819 MS.gene43302:CDS 45.0%
GATCAGATCATGGACATAGC+CGG + chr2.1:7875625-7875644 MS.gene43302:CDS 45.0%
GCACAACAGGGAAAATCTAG+GGG - chr2.1:7874561-7874580 None:intergenic 45.0%
GGATGCAAGGGAAACTGATA+AGG + chr2.1:7876733-7876752 MS.gene43302:CDS 45.0%
GGGAAACTGATAAGGACAAG+GGG + chr2.1:7876741-7876760 MS.gene43302:CDS 45.0%
GGTGCTTCTGTTGAAGAACT+TGG + chr2.1:7873402-7873421 MS.gene43302:CDS 45.0%
TAGCTGAAACCTGTTCCAGT+GGG - chr2.1:7874764-7874783 None:intergenic 45.0%
TAGGGGGTTTAGGCCATATT+TGG - chr2.1:7874544-7874563 None:intergenic 45.0%
TGAACCCTAGATGCAAAAGC+TGG - chr2.1:7875128-7875147 None:intergenic 45.0%
! ATCAAGGTGCTTGTGTATGC+TGG + chr2.1:7875967-7875986 MS.gene43302:CDS 45.0%
! CTATAGCCTTTTGGCATCGT+GGG - chr2.1:7875421-7875440 None:intergenic 45.0%
! TCTATAGCCTTTTGGCATCG+TGG - chr2.1:7875422-7875441 None:intergenic 45.0%
!! AAGGGAAGCTTTAGGTGTTG+GGG + chr2.1:7875843-7875862 MS.gene43302:CDS 45.0%
!! CTGGTTGATAGTGAAGAAGC+AGG + chr2.1:7876348-7876367 MS.gene43302:CDS 45.0%
!! GCAGCTTTTGGTTGATCCAT+AGG - chr2.1:7876693-7876712 None:intergenic 45.0%
!! GTAAGGGAAGCTTTAGGTGT+TGG + chr2.1:7875841-7875860 MS.gene43302:CDS 45.0%
!! TCACTTTCGGTGTTGTGTCT+GGG + chr2.1:7876578-7876597 MS.gene43302:intron 45.0%
!!! TTCCCTGGTTTTGTTGACTC+TGG + chr2.1:7873381-7873400 MS.gene43302:CDS 45.0%
ACAGTGCCATGTTGCAGGAT+TGG + chr2.1:7875899-7875918 MS.gene43302:CDS 50.0%
ATATGGTTAACTGGAGGGCC+AGG + chr2.1:7874079-7874098 MS.gene43302:CDS 50.0%
ATTCCATCCTCAAGAAGGGC+AGG - chr2.1:7875949-7875968 None:intergenic 50.0%
ATTCCTGCCCTTCTTGAGGA+TGG + chr2.1:7875943-7875962 MS.gene43302:CDS 50.0%
ATTTGGCAGGGAATTCGAGG+TGG + chr2.1:7876265-7876284 MS.gene43302:intron 50.0%
CTCATTTGGCAGGGAATTCG+AGG + chr2.1:7876262-7876281 MS.gene43302:intron 50.0%
CTTACTTTCCAGCCAAACGC+TGG - chr2.1:7876079-7876098 None:intergenic 50.0%
GCAATTTCACTGCTGCATCC+TGG - chr2.1:7874100-7874119 None:intergenic 50.0%
GCACCAGAGTCAACAAAACC+AGG - chr2.1:7873387-7873406 None:intergenic 50.0%
GTTGATGCCATGACATGGTC+AGG + chr2.1:7876288-7876307 MS.gene43302:CDS 50.0%
GTTGTTCCCACGATGCCAAA+AGG + chr2.1:7875412-7875431 MS.gene43302:CDS 50.0%
TACCTTGCAGCTTGGGAATG+AGG - chr2.1:7873453-7873472 None:intergenic 50.0%
TCAACCAGATACGGGGTTGT+AGG - chr2.1:7876336-7876355 None:intergenic 50.0%
TCGAACGTCGCTATCATCAG+TGG - chr2.1:7874789-7874808 None:intergenic 50.0%
TGAAACCTGTTCCAGTGGGT+TGG - chr2.1:7874760-7874779 None:intergenic 50.0%
TGTTAGTCCTCCGGTTTCCA+AGG + chr2.1:7876042-7876061 MS.gene43302:intron 50.0%
TTACCCGGTTCCTTGGAAAC+CGG - chr2.1:7876055-7876074 None:intergenic 50.0%
TTCCTCATTCCCAAGCTGCA+AGG + chr2.1:7873448-7873467 MS.gene43302:CDS 50.0%
TTTGGCAGGGAATTCGAGGT+GGG + chr2.1:7876266-7876285 MS.gene43302:intron 50.0%
! GGTTAAAGAGGCTGGTCACA+TGG + chr2.1:7876665-7876684 MS.gene43302:intron 50.0%
! TGTCTGGGACAAGTGTCTGT+CGG + chr2.1:7876593-7876612 MS.gene43302:intron 50.0%
!! AGCTTTAGGTGTTGGGGACT+TGG + chr2.1:7875849-7875868 MS.gene43302:CDS 50.0%
!! GCAGGAGTTCTGAAAAGCCA+CGG + chr2.1:7876366-7876385 MS.gene43302:CDS 50.0%
!! GTCACTTTCGGTGTTGTGTC+TGG + chr2.1:7876577-7876596 MS.gene43302:intron 50.0%
CAGCCAAACGCTGGATTACC+CGG - chr2.1:7876070-7876089 None:intergenic 55.0%
CGGACCTCTTGCTTTCCTCA+AGG + chr2.1:7876386-7876405 MS.gene43302:CDS 55.0%
GAACCGGGTAATCCAGCGTT+TGG + chr2.1:7876064-7876083 MS.gene43302:intron 55.0%
GGGTATTCCTGCCCTTCTTG+AGG + chr2.1:7875939-7875958 MS.gene43302:CDS 55.0%
GTAGACCAACCCACTGGAAC+AGG + chr2.1:7874752-7874771 MS.gene43302:CDS 55.0%
GTCTCCTACAACCCCGTATC+TGG + chr2.1:7876329-7876348 MS.gene43302:CDS 55.0%
TCCTCCGGTTTCCAAGGAAC+CGG + chr2.1:7876048-7876067 MS.gene43302:intron 55.0%
TGAGGAAAGCAAGAGGTCCG+TGG - chr2.1:7876386-7876405 None:intergenic 55.0%
! GGCTGGTCACATGGTTCCTA+TGG + chr2.1:7876674-7876693 MS.gene43302:CDS 55.0%
!! GGTGGGTTGATGCCATGACA+TGG + chr2.1:7876283-7876302 MS.gene43302:CDS 55.0%
CCTCCGGTTTCCAAGGAACC+GGG + chr2.1:7876049-7876068 MS.gene43302:intron 60.0%
CGCTGGATTACCCGGTTCCT+TGG - chr2.1:7876062-7876081 None:intergenic 60.0%
CGGGTAATCCAGCGTTTGGC+TGG + chr2.1:7876068-7876087 MS.gene43302:intron 60.0%
CCCGGTTCCTTGGAAACCGG+AGG - chr2.1:7876052-7876071 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 7873126 7876788 7873126 ID=MS.gene43302
chr2.1 mRNA 7873126 7876788 7873126 ID=MS.gene43302.t1;Parent=MS.gene43302
chr2.1 exon 7873126 7873469 7873126 ID=MS.gene43302.t1.exon1;Parent=MS.gene43302.t1
chr2.1 CDS 7873126 7873469 7873126 ID=cds.MS.gene43302.t1;Parent=MS.gene43302.t1
chr2.1 exon 7874027 7874201 7874027 ID=MS.gene43302.t1.exon2;Parent=MS.gene43302.t1
chr2.1 CDS 7874027 7874201 7874027 ID=cds.MS.gene43302.t1;Parent=MS.gene43302.t1
chr2.1 exon 7874734 7874853 7874734 ID=MS.gene43302.t1.exon3;Parent=MS.gene43302.t1
chr2.1 CDS 7874734 7874853 7874734 ID=cds.MS.gene43302.t1;Parent=MS.gene43302.t1
chr2.1 exon 7875047 7875190 7875047 ID=MS.gene43302.t1.exon4;Parent=MS.gene43302.t1
chr2.1 CDS 7875047 7875190 7875047 ID=cds.MS.gene43302.t1;Parent=MS.gene43302.t1
chr2.1 exon 7875299 7875449 7875299 ID=MS.gene43302.t1.exon5;Parent=MS.gene43302.t1
chr2.1 CDS 7875299 7875449 7875299 ID=cds.MS.gene43302.t1;Parent=MS.gene43302.t1
chr2.1 exon 7875569 7875657 7875569 ID=MS.gene43302.t1.exon6;Parent=MS.gene43302.t1
chr2.1 CDS 7875569 7875657 7875569 ID=cds.MS.gene43302.t1;Parent=MS.gene43302.t1
chr2.1 exon 7875760 7876018 7875760 ID=MS.gene43302.t1.exon7;Parent=MS.gene43302.t1
chr2.1 CDS 7875760 7876018 7875760 ID=cds.MS.gene43302.t1;Parent=MS.gene43302.t1
chr2.1 exon 7876274 7876407 7876274 ID=MS.gene43302.t1.exon8;Parent=MS.gene43302.t1
chr2.1 CDS 7876274 7876407 7876274 ID=cds.MS.gene43302.t1;Parent=MS.gene43302.t1
chr2.1 exon 7876666 7876788 7876666 ID=MS.gene43302.t1.exon9;Parent=MS.gene43302.t1
chr2.1 CDS 7876666 7876788 7876666 ID=cds.MS.gene43302.t1;Parent=MS.gene43302.t1
Gene Sequence

>MS.gene43302

ATGGCATCATCTTTAAGGTTCCTCCAAATGTGTCTGTCTTTTGTAATGTTCTTCCTCTTCATTTCACATTCATTCTCATCTCCAGCTTATCCCACAAACAATGACATTCTCCTCTCTTCAACTGCATCATCTTACCCAAAATTACAAGCAGAAAATCTCATAAGAGGACTTAATCTTTTTCCAAAAGATTCCATAAACACACCAGAGAATGATCCTCATTTTGTTCATGGAAATATTGTGGAAAAGAAGTTCACTTTCCCTGGTTTTGTTGACTCTGGTGCTTCTGTTGAAGAACTTGGTCATCATGCAGGCTATTATAGTCTTCCTCATTCCCAAGCTGCAAGGTAAAATAGATCATGACTATCTTTGAATTTTAGGCCAAAATAAGATAAAATAGAATGAAATATGAGGTAAGTTTTTTGTGGTAAAAAATGATCTAAGCATAAAGTAAGAAAAGCTTTAGACAGAATAAAAATATAGTTCTTGGAAAGCATAAAGTCAGAATAATAAAAGTGAAAGTGAACAAGCAAAGAATTTATAAAAAAATGGAATAGTTTGGATTTCTTATGTTCATTTGATCTAGTTTAATTTATTGGATATTTGTTTGATCATGTATTTTTATCATGTCTTTGATGTTGTCATTACTCGTGTATCAACTTAATCAAAATATATATCAAAGTATCATAATTTGAAATATCTGTTACAACATCTCCACTTCTAAAATTAAACTCCAAAATAGACCGAATTTTAAGAAAAACACTTTTTCAAATTATTACTTAACCAAAATAAGAATTTGATGACAACTCTATTGATTTATATTAATTGGTTTTTTGTCAACTCACATCATAATAATGTGTGCGAAGACATGTTTCCATTGAACAATTTGTTATGTCGATTGCAGGATGTTCTATTTTTTCTTTGAATCTCGAAACACTAAGGATGACCCTGTTGTTATATGGTTAACTGGAGGGCCAGGATGCAGCAGTGAAATTGCTATGTTTTATGAAAATGGTCCTTTTAAATTCTCCAAGGATAAGAACTTGTCCCTTGTTTGGAATGAATATGGATGGGACATGGTACCTATTAAATTATTCTCTTTTCTTTTTCTTTTTCCACTTTAGTTCTTACTCATATATGATCATCTTGCAATAATGACATGTTTGGATTGACTTATTTGCGCACATAAACAATTGTGAGACTGTTTGAGAATTTTTTTGGAAACAACTTATGTCATATTTGTAGGTTTTTTTGTGAGGTCATATCTATAAGTTGTTTTCAGTTTTTTTCATAAGCTCCAAACTAATATAGCTTATGAAACTGTTTGACTTTATTTACCTTTTATTGTAAAAATAGCTAATACATAAGCATTTATATGACAAGGGCTTATGATATAAGTGCTTAATTAAGTTGTTTATCCAAATATGGCCTAAACCCCCTAGATTTTCCCTGTTGTGCTATGTTCAATCAATGTAGAGTGTCAACAACAATAGCAAAAGTAATGATATTTATGCATATACCAGTCCACACAAACTCAAACAATCAAGTTATTATTTATTAGCACTGAAGTTGTTTTTTTAATAGTGCCAATGCATTTTTTCTTGTTTGTAGGCATCAAATATAATATTTGTAGACCAACCCACTGGAACAGGTTTCAGCTATACCACTGATGATAGCGACGTTCGACATGATGAAGACGGTGTTAGCAATGATCTATATGATTTCTTGCAGGTAACTTGATTTGTTAAGTGATTAAAGAAAATAATATGACAACAACATTTGAAATGATTACTTTATTTATTAAATTATTCACTTGTATTAAGTGGTTAAACTTGATTCACATTACAATCAATCTAAATTGCAAATTCTATGTTAAACTCTAATGTTGTGCATACATAAGATTCTCTAAATTTCACAATGACAGGCATTTTTCAAGGAACACCCTCAGTTCACTAAGAATGATTTTTATATTACCGGAGAATCATACGCTGGACATTACATTCCAGCTTTTGCATCTAGGGTTCATCAAGGAAACAAGGCAAAAGAAGGAATTCATATAAATCTAAAGGTAATATTACATAGTCATATAATGTACACTATATTTATGTATAGGTAAACTTTGTCAAAATAATATCAATGTAATGTAAACTAATTTGTAAACCTTTATAATAAACAGGGTTTTGCTATTGGTAACGGATTAACCAATCCGGAAATTCAGTACAAGGCATATCCAGATTTTGCATTAGACAATGGACTGATTAATAAGGATGAACATGCCAACATCAACAAGTTGTTCCCACGATGCCAAAAGGCTATAGAATCTTGTGGTATGACATTTTAAGTTTGTTCCCTTCTCGGTCATAAACTGAAAATTTTACCAATTTGTTGTGCCATTTACTTGTTATTTTTCCTTATTGACACTAATAGTTTGTATTTGATTTGTTAGGCACTAAAGGTGGAGACGCATGCATGACTTCAAGAAACATTTGCAGTGAAATATTTGATCAGATCATGGACATAGCCGGCAACATTAATGTATGATATCAAAAAAGAAAAGGACTAAAAGTATTTGACAAAGATAGTATGAAAATAATGCTGTTTGAGTTCACTAATGCATTATGTTTATTCCTAATGCAGTACTATGACATTAGAAAGCAATGTGTGGGAAGTCTTTGTTATGACTTCTCCAATGCGGAAACATTCTTGAACATGAAGTCAGTAAGGGAAGCTTTAGGTGTTGGGGACTTGGAATTTGTTTCTTGCAGTAGCACAGTATACAGTGCCATGTTGCAGGATTGGATGAAAAATCTAGAAGTGGGTATTCCTGCCCTTCTTGAGGATGGAATCAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAATTGGCTTGGTAAGCTCAGTTACAGTAATATGTGTTAGTCCTCCGGTTTCCAAGGAACCGGGTAATCCAGCGTTTGGCTGGAAAGTAAGTAAAGTTCTGCAATAGATCTAATCAGAATTTGAAGTCCGGCTCTCTTAAATAATTCGTCCTTAAGTGAAGCACATTGATTATAAGTTTGATTAATTTGGAACCAAAATTTCTTGGGTCAAAATAGAATACACAAATATGGTAGTTAGATTTATAAATGTGATTCTCATTTGGCAGGGAATTCGAGGTGGGTTGATGCCATGACATGGTCAGGTCAAAAAGAATTTAAGGCGTCTCCTACAACCCCGTATCTGGTTGATAGTGAAGAAGCAGGAGTTCTGAAAAGCCACGGACCTCTTGCTTTCCTCAAGGTTTGTGTTTAAGGATGTATTCATTAGCGTATTAGACGATTGATCTATATAGCACTGACACTTCAAACAAAAAGTGTGTTTGGTTTTCGACACATGTCGTGTTCGACATCGAGACAAGTATTTGCATTCGATCATTTTTATTTTCTCAAATTATTACTGATGTTTACATGTCACTTTCGGTGTTGTGTCTGGGACAAGTGTCTGTCGGTGCTTTGTAGCTATTGATACGCGTGTGTTTAACTTCCGTTTTTTTAATAGGTTAAAGAGGCTGGTCACATGGTTCCTATGGATCAACCAAAAGCTGCACTTCAGATGTTAAAAGATTGGATGCAAGGGAAACTGATAAGGACAAGGGGAGGAGATAATGTCTCGTCTATATGA
Protein sequence

>MS.gene43302.t1

MASSLRFLQMCLSFVMFFLFISHSFSSPAYPTNNDILLSSTASSYPKLQAENLIRGLNLFPKDSINTPENDPHFVHGNIVEKKFTFPGFVDSGASVEELGHHAGYYSLPHSQAARMFYFFFESRNTKDDPVVIWLTGGPGCSSEIAMFYENGPFKFSKDKNLSLVWNEYGWDMASNIIFVDQPTGTGFSYTTDDSDVRHDEDGVSNDLYDFLQAFFKEHPQFTKNDFYITGESYAGHYIPAFASRVHQGNKAKEGIHINLKGFAIGNGLTNPEIQYKAYPDFALDNGLINKDEHANINKLFPRCQKAIESCGTKGGDACMTSRNICSEIFDQIMDIAGNINYYDIRKQCVGSLCYDFSNAETFLNMKSVREALGVGDLEFVSCSSTVYSAMLQDWMKNLEVGIPALLEDGIKVLVYAGEEDLICNWLGNSRWVDAMTWSGQKEFKASPTTPYLVDSEEAGVLKSHGPLAFLKVKEAGHMVPMDQPKAALQMLKDWMQGKLIRTRGGDNVSSI