Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43312.t1 | XP_030520396.1 | 85.1 | 74 | 11 | 0 | 45 | 118 | 41 | 114 | 2.00E-30 | 142.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43312.t1 | Q852N6 | 71.8 | 85 | 24 | 0 | 34 | 118 | 451 | 535 | 3.9e-30 | 132.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43312.t1 | A0A2P5Y254 | 78.8 | 85 | 17 | 1 | 35 | 118 | 437 | 521 | 1.9e-30 | 141.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene43312 | 0.805049 | 1.61E-49 | -1.69E-46 |
| MS.gene049159 | MS.gene43312 | 0.828706 | 7.75E-55 | -1.69E-46 |
| MS.gene049452 | MS.gene43312 | 0.802024 | 6.83E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene43312 | 0.807806 | 4.22E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene43312 | 0.804648 | 1.95E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene43312 | 0.80828 | 3.35E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene43312 | 0.807704 | 4.44E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene43312 | 0.82356 | 1.30E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene43312 | 0.803692 | 3.09E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene43312 | 0.800135 | 1.66E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene43312 | 0.816669 | 4.91E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene43312 | 0.800266 | 1.56E-48 | -1.69E-46 |
| MS.gene055466 | MS.gene43312 | 0.805106 | 1.57E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene43312 | 0.815059 | 1.12E-51 | -1.69E-46 |
| MS.gene056507 | MS.gene43312 | 0.806597 | 7.61E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene43312 | 0.805375 | 1.38E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene43312 | 0.812001 | 5.28E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene43312 | 0.835808 | 1.35E-56 | -1.69E-46 |
| MS.gene06052 | MS.gene43312 | 0.822802 | 1.95E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43312.t1 | MTR_1g041150 | 98.649 | 74 | 1 | 0 | 45 | 118 | 467 | 540 | 8.31e-46 | 157 |
| MS.gene43312.t1 | MTR_1g055255 | 79.730 | 74 | 15 | 0 | 45 | 118 | 473 | 546 | 5.91e-38 | 135 |
| MS.gene43312.t1 | MTR_7g106710 | 65.556 | 90 | 31 | 0 | 45 | 134 | 484 | 573 | 2.02e-35 | 129 |
| MS.gene43312.t1 | MTR_1g054865 | 74.324 | 74 | 19 | 0 | 45 | 118 | 510 | 583 | 2.73e-35 | 128 |
| MS.gene43312.t1 | MTR_5g099240 | 72.619 | 84 | 23 | 0 | 35 | 118 | 363 | 446 | 1.44e-34 | 125 |
| MS.gene43312.t1 | MTR_5g099240 | 72.619 | 84 | 23 | 0 | 35 | 118 | 435 | 518 | 2.66e-34 | 125 |
| MS.gene43312.t1 | MTR_7g106710 | 74.324 | 74 | 19 | 0 | 45 | 118 | 484 | 557 | 3.07e-34 | 125 |
| MS.gene43312.t1 | MTR_1g096490 | 64.706 | 85 | 30 | 0 | 34 | 118 | 368 | 452 | 1.62e-32 | 120 |
| MS.gene43312.t1 | MTR_3g098090 | 70.270 | 74 | 22 | 0 | 45 | 118 | 381 | 454 | 7.85e-32 | 118 |
| MS.gene43312.t1 | MTR_8g095440 | 68.919 | 74 | 23 | 0 | 45 | 118 | 379 | 452 | 1.23e-30 | 115 |
| MS.gene43312.t1 | MTR_3g098070 | 68.919 | 74 | 23 | 0 | 45 | 118 | 378 | 451 | 1.65e-30 | 114 |
| MS.gene43312.t1 | MTR_5g009830 | 53.409 | 88 | 40 | 1 | 38 | 124 | 408 | 495 | 6.79e-25 | 99.4 |
| MS.gene43312.t1 | MTR_0028s0170 | 54.321 | 81 | 36 | 1 | 45 | 124 | 427 | 507 | 5.03e-24 | 97.1 |
| MS.gene43312.t1 | MTR_8g099095 | 52.273 | 88 | 41 | 1 | 38 | 124 | 408 | 495 | 8.02e-24 | 96.3 |
| MS.gene43312.t1 | MTR_5g092810 | 50.000 | 88 | 43 | 1 | 38 | 124 | 434 | 521 | 5.87e-23 | 94.0 |
| MS.gene43312.t1 | MTR_5g089320 | 53.086 | 81 | 37 | 1 | 45 | 124 | 417 | 497 | 2.30e-22 | 92.0 |
| MS.gene43312.t1 | MTR_1g026190 | 53.086 | 81 | 37 | 1 | 45 | 124 | 431 | 511 | 3.30e-22 | 91.7 |
| MS.gene43312.t1 | MTR_4g132070 | 51.852 | 81 | 38 | 1 | 45 | 124 | 440 | 520 | 4.20e-22 | 91.7 |
| MS.gene43312.t1 | MTR_3g051770 | 57.534 | 73 | 30 | 1 | 45 | 116 | 432 | 504 | 6.05e-21 | 88.2 |
| MS.gene43312.t1 | MTR_5g089440 | 50.617 | 81 | 38 | 2 | 46 | 124 | 88 | 168 | 1.19e-19 | 81.3 |
| MS.gene43312.t1 | MTR_4g107490 | 50.000 | 78 | 37 | 2 | 44 | 119 | 421 | 498 | 7.68e-19 | 82.0 |
| MS.gene43312.t1 | MTR_4g132040 | 48.148 | 81 | 41 | 1 | 45 | 124 | 444 | 524 | 1.64e-18 | 81.3 |
| MS.gene43312.t1 | MTR_7g068710 | 51.948 | 77 | 33 | 2 | 47 | 119 | 405 | 481 | 1.02e-17 | 79.0 |
| MS.gene43312.t1 | MTR_1g052530 | 48.000 | 75 | 35 | 2 | 45 | 118 | 401 | 472 | 4.30e-14 | 68.6 |
| MS.gene43312.t1 | MTR_1g041080 | 84.375 | 32 | 5 | 0 | 1 | 32 | 32 | 63 | 9.59e-14 | 62.8 |
| MS.gene43312.t1 | MTR_7g091890 | 41.333 | 75 | 40 | 2 | 45 | 118 | 407 | 478 | 5.62e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43312.t1 | AT5G04870 | 81.081 | 74 | 14 | 0 | 45 | 118 | 499 | 572 | 2.38e-38 | 137 |
| MS.gene43312.t1 | AT3G10660 | 78.667 | 75 | 16 | 0 | 45 | 119 | 535 | 609 | 1.04e-37 | 135 |
| MS.gene43312.t1 | AT3G10660 | 78.667 | 75 | 16 | 0 | 45 | 119 | 535 | 609 | 1.04e-37 | 135 |
| MS.gene43312.t1 | AT2G38910 | 69.048 | 84 | 26 | 0 | 35 | 118 | 473 | 556 | 5.94e-36 | 130 |
| MS.gene43312.t1 | AT4G38230 | 67.857 | 84 | 27 | 0 | 35 | 118 | 393 | 476 | 4.69e-34 | 124 |
| MS.gene43312.t1 | AT4G38230 | 67.857 | 84 | 27 | 0 | 35 | 118 | 219 | 302 | 4.84e-34 | 122 |
| MS.gene43312.t1 | AT2G17290 | 70.238 | 84 | 25 | 0 | 35 | 118 | 424 | 507 | 4.23e-33 | 122 |
| MS.gene43312.t1 | AT2G17290 | 70.238 | 84 | 25 | 0 | 35 | 118 | 424 | 507 | 4.23e-33 | 122 |
| MS.gene43312.t1 | AT4G38230 | 67.857 | 84 | 27 | 0 | 35 | 118 | 363 | 446 | 6.26e-33 | 121 |
| MS.gene43312.t1 | AT4G38230 | 67.857 | 84 | 27 | 0 | 35 | 118 | 363 | 446 | 6.26e-33 | 121 |
| MS.gene43312.t1 | AT4G35310 | 75.676 | 74 | 18 | 0 | 45 | 118 | 446 | 519 | 4.48e-32 | 119 |
| MS.gene43312.t1 | AT4G35310 | 75.676 | 74 | 18 | 0 | 45 | 118 | 446 | 519 | 4.48e-32 | 119 |
| MS.gene43312.t1 | AT4G09570 | 65.882 | 85 | 29 | 0 | 34 | 118 | 363 | 447 | 7.53e-32 | 118 |
| MS.gene43312.t1 | AT1G35670 | 65.882 | 85 | 29 | 0 | 34 | 118 | 364 | 448 | 9.63e-32 | 118 |
| MS.gene43312.t1 | AT5G23580 | 74.324 | 74 | 19 | 0 | 45 | 118 | 371 | 444 | 8.01e-31 | 115 |
| MS.gene43312.t1 | AT5G12180 | 54.945 | 91 | 40 | 1 | 35 | 124 | 412 | 502 | 5.40e-29 | 110 |
| MS.gene43312.t1 | AT5G19360 | 54.945 | 91 | 40 | 1 | 35 | 124 | 407 | 497 | 6.76e-29 | 110 |
| MS.gene43312.t1 | AT4G23650 | 51.136 | 88 | 42 | 1 | 38 | 124 | 420 | 507 | 7.20e-24 | 96.7 |
| MS.gene43312.t1 | AT4G04720 | 49.383 | 81 | 40 | 1 | 45 | 124 | 428 | 508 | 1.17e-21 | 90.1 |
| MS.gene43312.t1 | AT4G04720 | 49.383 | 81 | 40 | 1 | 45 | 124 | 428 | 508 | 1.17e-21 | 90.1 |
| MS.gene43312.t1 | AT1G61950 | 50.617 | 81 | 39 | 1 | 45 | 124 | 448 | 528 | 2.92e-21 | 89.4 |
| MS.gene43312.t1 | AT4G04710 | 53.333 | 75 | 34 | 1 | 45 | 118 | 367 | 441 | 1.62e-20 | 87.0 |
| MS.gene43312.t1 | AT4G21940 | 50.617 | 81 | 39 | 1 | 45 | 124 | 450 | 530 | 1.87e-20 | 87.0 |
| MS.gene43312.t1 | AT4G21940 | 50.617 | 81 | 39 | 1 | 45 | 124 | 450 | 530 | 2.01e-20 | 86.7 |
| MS.gene43312.t1 | AT4G04710 | 53.333 | 75 | 34 | 1 | 45 | 118 | 394 | 468 | 2.88e-20 | 86.3 |
| MS.gene43312.t1 | AT4G04710 | 53.333 | 75 | 34 | 1 | 45 | 118 | 396 | 470 | 2.95e-20 | 86.3 |
| MS.gene43312.t1 | AT4G04710 | 53.333 | 75 | 34 | 1 | 45 | 118 | 381 | 455 | 3.10e-20 | 86.3 |
| MS.gene43312.t1 | AT1G76040 | 45.455 | 88 | 47 | 1 | 38 | 124 | 215 | 302 | 3.52e-20 | 84.7 |
| MS.gene43312.t1 | AT1G76040 | 45.455 | 88 | 47 | 1 | 38 | 124 | 215 | 302 | 3.52e-20 | 84.7 |
| MS.gene43312.t1 | AT4G04695 | 43.750 | 96 | 53 | 1 | 45 | 139 | 380 | 475 | 7.04e-20 | 85.1 |
| MS.gene43312.t1 | AT1G50700 | 46.914 | 81 | 42 | 1 | 45 | 124 | 422 | 502 | 8.67e-20 | 85.1 |
| MS.gene43312.t1 | AT1G76040 | 48.148 | 81 | 41 | 1 | 45 | 124 | 460 | 540 | 1.37e-19 | 84.3 |
| MS.gene43312.t1 | AT1G74740 | 48.193 | 83 | 41 | 2 | 44 | 124 | 407 | 489 | 3.43e-19 | 83.2 |
| MS.gene43312.t1 | AT1G50700 | 44.565 | 92 | 50 | 1 | 34 | 124 | 437 | 528 | 2.05e-18 | 80.9 |
| MS.gene43312.t1 | AT3G51850 | 45.263 | 95 | 49 | 2 | 30 | 121 | 387 | 481 | 3.20e-18 | 80.5 |
| MS.gene43312.t1 | AT4G04740 | 44.444 | 81 | 44 | 1 | 45 | 124 | 417 | 497 | 3.37e-18 | 80.5 |
| MS.gene43312.t1 | AT4G04740 | 44.444 | 81 | 44 | 1 | 45 | 124 | 417 | 497 | 3.37e-18 | 80.5 |
| MS.gene43312.t1 | AT4G04740 | 44.444 | 81 | 44 | 1 | 45 | 124 | 417 | 497 | 3.37e-18 | 80.5 |
| MS.gene43312.t1 | AT4G04740 | 44.444 | 81 | 44 | 1 | 45 | 124 | 417 | 497 | 3.37e-18 | 80.5 |
| MS.gene43312.t1 | AT4G04740 | 44.444 | 81 | 44 | 1 | 45 | 124 | 417 | 497 | 3.37e-18 | 80.5 |
| MS.gene43312.t1 | AT4G04740 | 44.444 | 81 | 44 | 1 | 45 | 124 | 417 | 497 | 3.37e-18 | 80.5 |
| MS.gene43312.t1 | AT4G04740 | 46.667 | 75 | 39 | 1 | 45 | 118 | 417 | 491 | 7.02e-18 | 79.3 |
| MS.gene43312.t1 | AT3G20410 | 45.679 | 81 | 43 | 1 | 45 | 124 | 440 | 520 | 1.05e-17 | 79.0 |
| MS.gene43312.t1 | AT3G20410 | 45.679 | 81 | 43 | 1 | 45 | 124 | 440 | 520 | 1.05e-17 | 79.0 |
| MS.gene43312.t1 | AT1G18890 | 48.193 | 83 | 41 | 2 | 44 | 124 | 411 | 493 | 1.30e-17 | 78.6 |
| MS.gene43312.t1 | AT3G51850 | 44.086 | 93 | 49 | 2 | 30 | 119 | 387 | 479 | 3.67e-17 | 77.4 |
| MS.gene43312.t1 | AT4G04700 | 41.667 | 96 | 55 | 1 | 45 | 139 | 380 | 475 | 1.28e-16 | 75.9 |
| MS.gene43312.t1 | AT5G19450 | 46.667 | 75 | 36 | 2 | 45 | 118 | 407 | 478 | 1.09e-14 | 70.5 |
| MS.gene43312.t1 | AT5G19450 | 46.667 | 75 | 36 | 2 | 45 | 118 | 407 | 478 | 1.09e-14 | 70.5 |
| MS.gene43312.t1 | AT3G57530 | 42.105 | 76 | 43 | 1 | 45 | 119 | 412 | 487 | 2.19e-14 | 69.3 |
| MS.gene43312.t1 | AT5G12480 | 41.096 | 73 | 42 | 1 | 46 | 118 | 409 | 480 | 2.59e-13 | 66.2 |
| MS.gene43312.t1 | AT1G76040 | 60.000 | 45 | 18 | 0 | 45 | 89 | 460 | 504 | 6.78e-13 | 65.1 |
| MS.gene43312.t1 | AT4G21940 | 62.791 | 43 | 16 | 0 | 45 | 87 | 450 | 492 | 1.15e-12 | 64.7 |
| MS.gene43312.t1 | AT5G12480 | 41.096 | 73 | 42 | 1 | 46 | 118 | 315 | 386 | 2.84e-12 | 63.5 |
| MS.gene43312.t1 | AT1G50700 | 55.814 | 43 | 19 | 0 | 45 | 87 | 422 | 464 | 5.86e-11 | 59.7 |
Find 18 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGACAAGGTAGCTAAAA+AGG | 0.261906 | 1.4:-34058885 | None:intergenic |
| CAACAAGCTTGCGATGAGTT+TGG | 0.307266 | 1.4:+34058779 | MS.gene43312:CDS |
| TGAAGAGGCTACAAAGATAA+TGG | 0.348956 | 1.4:+34056759 | MS.gene43312:CDS |
| ATCTTTGTAGCCTCTTCAAC+AGG | 0.374337 | 1.4:-34056754 | None:intergenic |
| AACAGTGGGACAATTGATTA+TGG | 0.379412 | 1.4:+34058641 | MS.gene43312:CDS |
| GAAGAGGCTACAAAGATAAT+GGG | 0.456216 | 1.4:+34056760 | MS.gene43312:CDS |
| CAAAGAAATCGATGAAGATA+AGG | 0.472552 | 1.4:+34058832 | MS.gene43312:CDS |
| ATCTTTATCAAAGTAAGAAA+AGG | 0.472805 | 1.4:-34058726 | None:intergenic |
| TACTTTGATAAAGATGGAAG+TGG | 0.530734 | 1.4:+34058734 | MS.gene43312:CDS |
| ATCGATGAAGATAAGGTAAG+TGG | 0.552011 | 1.4:+34058839 | MS.gene43312:CDS |
| TCAACAGGATCATCATCCAT+AGG | 0.602023 | 1.4:-34056739 | None:intergenic |
| GGATGATGATCCTGTTGAAG+AGG | 0.613042 | 1.4:+34056744 | MS.gene43312:CDS |
| AACTACAGATATTGAAGACA+AGG | 0.622864 | 1.4:-34058897 | None:intergenic |
| AGGCTGATGTAGATAACAGT+GGG | 0.651767 | 1.4:+34058627 | MS.gene43312:intron |
| CAATTAGACTACAACATCAG+AGG | 0.656073 | 1.4:+34056838 | MS.gene43312:CDS |
| TGATTATGGTGAGTTCATTG+CGG | 0.658251 | 1.4:+34058655 | MS.gene43312:CDS |
| TAGGCTGATGTAGATAACAG+TGG | 0.668045 | 1.4:+34058626 | MS.gene43312:intron |
| ATAATGGGCAACAACATCAG+AGG | 0.672852 | 1.4:+34056775 | MS.gene43312:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAATTAAAATTGCA+AGG | + | chr1.4:34057037-34057056 | MS.gene43312:intron | 10.0% |
| !!! | TTTTTTGTAAAGATTTAATT+TGG | + | chr1.4:34057965-34057984 | MS.gene43312:intron | 10.0% |
| !! | ATCATAAAAATTAAGCAAAT+TGG | - | chr1.4:34057444-34057463 | None:intergenic | 15.0% |
| !! | ATTGACAAATTATATACTAA+TGG | + | chr1.4:34058102-34058121 | MS.gene43312:intron | 15.0% |
| !! | TGAAGAAATAATTATATAGA+TGG | + | chr1.4:34057737-34057756 | MS.gene43312:intron | 15.0% |
| !!! | TTTTTAATGTCTTGATTTTT+TGG | - | chr1.4:34058045-34058064 | None:intergenic | 15.0% |
| !! | AAAAATGTTCCAAAATCATA+AGG | - | chr1.4:34057844-34057863 | None:intergenic | 20.0% |
| !! | AAACATGTACCTATAAAATA+AGG | - | chr1.4:34058192-34058211 | None:intergenic | 20.0% |
| !! | AACATGTACCTATAAAATAA+GGG | - | chr1.4:34058191-34058210 | None:intergenic | 20.0% |
| !! | AAGAAATGACATGATTTAAA+TGG | - | chr1.4:34057529-34057548 | None:intergenic | 20.0% |
| !! | AATTTATGATTTAATGCAAG+CGG | + | chr1.4:34058434-34058453 | MS.gene43312:intron | 20.0% |
| !! | ATCTTTATCAAAGTAAGAAA+AGG | - | chr1.4:34058729-34058748 | None:intergenic | 20.0% |
| !! | GAAAAGTTATCTTCAATTTA+AGG | + | chr1.4:34057779-34057798 | MS.gene43312:intron | 20.0% |
| !! | TCAATTATTTGTTCCTAAAT+AGG | + | chr1.4:34057643-34057662 | MS.gene43312:intron | 20.0% |
| !!! | AGTAGTTATGATTTGTTATT+CGG | - | chr1.4:34058303-34058322 | None:intergenic | 20.0% |
| !!! | AGTATATAATTTGTCAATGT+TGG | - | chr1.4:34058100-34058119 | None:intergenic | 20.0% |
| !!! | ATAATAAGACCTTATGATTT+TGG | + | chr1.4:34057832-34057851 | MS.gene43312:intron | 20.0% |
| !!! | ATTTTGTAAAAGACCTATTT+AGG | - | chr1.4:34057659-34057678 | None:intergenic | 20.0% |
| !!! | GTATATAATTTGTCAATGTT+GGG | - | chr1.4:34058099-34058118 | None:intergenic | 20.0% |
| !!! | GTCTTTTACAAAATTTCATA+TGG | + | chr1.4:34057665-34057684 | MS.gene43312:intron | 20.0% |
| !!! | TTGAACATTTCTTTTAATCT+TGG | - | chr1.4:34058350-34058369 | None:intergenic | 20.0% |
| !!! | TTTTCTTACTTTGATAAAGA+TGG | + | chr1.4:34058728-34058747 | MS.gene43312:CDS | 20.0% |
| ! | AAAAAACCTTGAAATGTGAT+TGG | + | chr1.4:34057196-34057215 | MS.gene43312:intron | 25.0% |
| ! | AAAATTAAGCAAATTGGTTG+TGG | - | chr1.4:34057438-34057457 | None:intergenic | 25.0% |
| ! | AAAGCAATTGAAATACATGT+TGG | + | chr1.4:34057222-34057241 | MS.gene43312:intron | 25.0% |
| ! | AACATGTATTTCAATTGCTT+TGG | - | chr1.4:34057223-34057242 | None:intergenic | 25.0% |
| ! | AAGCAATTGAAATACATGTT+GGG | + | chr1.4:34057223-34057242 | MS.gene43312:intron | 25.0% |
| ! | AAGTGTACATTTCAATAAGA+AGG | - | chr1.4:34056889-34056908 | None:intergenic | 25.0% |
| ! | ACAACTCAAGTATAAAACAT+GGG | + | chr1.4:34058135-34058154 | MS.gene43312:intron | 25.0% |
| ! | ATAAATGCCTTTACTGTAAT+TGG | + | chr1.4:34057575-34057594 | MS.gene43312:intron | 25.0% |
| ! | ATACTTGTCATCAAATTGAT+TGG | + | chr1.4:34056999-34057018 | MS.gene43312:intron | 25.0% |
| ! | ATATCCAGGAAATTAACATA+AGG | + | chr1.4:34057162-34057181 | MS.gene43312:intron | 25.0% |
| ! | ATTGAAATGTACACTTGAAA+AGG | + | chr1.4:34056893-34056912 | MS.gene43312:intron | 25.0% |
| ! | CACCAAATGTTTATAAAGTA+TGG | + | chr1.4:34058159-34058178 | MS.gene43312:intron | 25.0% |
| ! | GTTAATGTGTTCTATTTAAC+AGG | + | chr1.4:34058563-34058582 | MS.gene43312:intron | 25.0% |
| ! | TAAAGTTGTTGCTAATCTTA+AGG | + | chr1.4:34058404-34058423 | MS.gene43312:intron | 25.0% |
| ! | TACTTGTCATCAAATTGATT+GGG | + | chr1.4:34057000-34057019 | MS.gene43312:intron | 25.0% |
| ! | TATATACTAATGGAACTCAT+GGG | + | chr1.4:34058112-34058131 | MS.gene43312:intron | 25.0% |
| ! | TATCCAGGAAATTAACATAA+GGG | + | chr1.4:34057163-34057182 | MS.gene43312:intron | 25.0% |
| ! | TGCCATACTTTATAAACATT+TGG | - | chr1.4:34058164-34058183 | None:intergenic | 25.0% |
| ! | TTATATACTAATGGAACTCA+TGG | + | chr1.4:34058111-34058130 | MS.gene43312:intron | 25.0% |
| ! | TTATGATAAAAATAGGACAG+AGG | - | chr1.4:34056930-34056949 | None:intergenic | 25.0% |
| ! | TTCTAATCCAATTACAGTAA+AGG | - | chr1.4:34057585-34057604 | None:intergenic | 25.0% |
| ! | TTGAAATGTACACTTGAAAA+GGG | + | chr1.4:34056894-34056913 | MS.gene43312:intron | 25.0% |
| !! | GACAAGTATTTTTCTAATAC+TGG | - | chr1.4:34056988-34057007 | None:intergenic | 25.0% |
| AACTACAGATATTGAAGACA+AGG | - | chr1.4:34058900-34058919 | None:intergenic | 30.0% | |
| ACTTGTCATCAAATTGATTG+GGG | + | chr1.4:34057001-34057020 | MS.gene43312:intron | 30.0% | |
| ATCAAATTGATTGGGGAAAA+AGG | + | chr1.4:34057008-34057027 | MS.gene43312:intron | 30.0% | |
| CAAAGAAATCGATGAAGATA+AGG | + | chr1.4:34058832-34058851 | MS.gene43312:CDS | 30.0% | |
| GACAACTCAAGTATAAAACA+TGG | + | chr1.4:34058134-34058153 | MS.gene43312:intron | 30.0% | |
| GGTATGTAAGTATTCCATTA+CGG | - | chr1.4:34058258-34058277 | None:intergenic | 30.0% | |
| TACTTTGATAAAGATGGAAG+TGG | + | chr1.4:34058734-34058753 | MS.gene43312:CDS | 30.0% | |
| TCACTATACCTTGAAATTGT+AGG | + | chr1.4:34058607-34058626 | MS.gene43312:intron | 30.0% | |
| TGTAAAGAGATAGTTAGTCA+CGG | - | chr1.4:34057622-34057641 | None:intergenic | 30.0% | |
| ! | TTAAACACTTTAGAAGAACC+TGG | - | chr1.4:34057279-34057298 | None:intergenic | 30.0% |
| !! | CTAATACTGGTTTAAGTTGT+GGG | - | chr1.4:34056975-34056994 | None:intergenic | 30.0% |
| !! | TCTAATACTGGTTTAAGTTG+TGG | - | chr1.4:34056976-34056995 | None:intergenic | 30.0% |
| AAATACATGTTGGGCTATGT+CGG | + | chr1.4:34057232-34057251 | MS.gene43312:intron | 35.0% | |
| AACAGTGGGACAATTGATTA+TGG | + | chr1.4:34058641-34058660 | MS.gene43312:CDS | 35.0% | |
| AAGAAAGAGACGAAAAACTC+AGG | - | chr1.4:34056811-34056830 | None:intergenic | 35.0% | |
| AAGTTCAAACACACATATCC+AGG | + | chr1.4:34057148-34057167 | MS.gene43312:intron | 35.0% | |
| ACATTGTTGGAGATTCTATG+TGG | - | chr1.4:34058074-34058093 | None:intergenic | 35.0% | |
| ATCGATGAAGATAAGGTAAG+TGG | + | chr1.4:34058839-34058858 | MS.gene43312:CDS | 35.0% | |
| CAATTAGACTACAACATCAG+AGG | + | chr1.4:34056838-34056857 | MS.gene43312:CDS | 35.0% | |
| CAGACATATGACATTAACGT+CGG | + | chr1.4:34058324-34058343 | MS.gene43312:intron | 35.0% | |
| GAAGAGGCTACAAAGATAAT+GGG | + | chr1.4:34056760-34056779 | MS.gene43312:CDS | 35.0% | |
| GGAAAGTTAAGATGTGCAAA+TGG | + | chr1.4:34058489-34058508 | MS.gene43312:intron | 35.0% | |
| GTTAAGATGTGCAAATGGAA+TGG | + | chr1.4:34058494-34058513 | MS.gene43312:intron | 35.0% | |
| TAATGCAAGCGGTAAGTATA+AGG | + | chr1.4:34058445-34058464 | MS.gene43312:intron | 35.0% | |
| TACATCAGCCTACAATTTCA+AGG | - | chr1.4:34058618-34058637 | None:intergenic | 35.0% | |
| TGAAGACAAGGTAGCTAAAA+AGG | - | chr1.4:34058888-34058907 | None:intergenic | 35.0% | |
| TGAAGAGGCTACAAAGATAA+TGG | + | chr1.4:34056759-34056778 | MS.gene43312:CDS | 35.0% | |
| TGACATGATTTAAATGGAGC+AGG | - | chr1.4:34057523-34057542 | None:intergenic | 35.0% | |
| TGATTATGGTGAGTTCATTG+CGG | + | chr1.4:34058655-34058674 | MS.gene43312:CDS | 35.0% | |
| TTGCCCTTATGTTAATTTCC+TGG | - | chr1.4:34057169-34057188 | None:intergenic | 35.0% | |
| TTTGGACCAATCACATTTCA+AGG | - | chr1.4:34057205-34057224 | None:intergenic | 35.0% | |
| ! | TAAGGTGGATGATTTGCAAA+TGG | + | chr1.4:34058463-34058482 | MS.gene43312:intron | 35.0% |
| ! | TGGATGATTTGCAAATGGAA+TGG | + | chr1.4:34058468-34058487 | MS.gene43312:intron | 35.0% |
| AAGAAGGTGAAACTCATACG+AGG | - | chr1.4:34056873-34056892 | None:intergenic | 40.0% | |
| AATACATGTTGGGCTATGTC+GGG | + | chr1.4:34057233-34057252 | MS.gene43312:intron | 40.0% | |
| AGAAGGTGAAACTCATACGA+GGG | - | chr1.4:34056872-34056891 | None:intergenic | 40.0% | |
| AGACTTCTGAACTACCGTAA+TGG | + | chr1.4:34058241-34058260 | MS.gene43312:intron | 40.0% | |
| AGGCTGATGTAGATAACAGT+GGG | + | chr1.4:34058627-34058646 | MS.gene43312:intron | 40.0% | |
| AGTAATCCACCCAAAAGTCA+AGG | + | chr1.4:34057064-34057083 | MS.gene43312:intron | 40.0% | |
| ATCTTTGTAGCCTCTTCAAC+AGG | - | chr1.4:34056757-34056776 | None:intergenic | 40.0% | |
| GATGTGCAAATGGAATGGAA+TGG | + | chr1.4:34058499-34058518 | MS.gene43312:intron | 40.0% | |
| GTTATTCGGAGCGATTAAAG+AGG | - | chr1.4:34058289-34058308 | None:intergenic | 40.0% | |
| TAGGCTGATGTAGATAACAG+TGG | + | chr1.4:34058626-34058645 | MS.gene43312:intron | 40.0% | |
| TCAATGTTGGGTGACATTGT+TGG | - | chr1.4:34058087-34058106 | None:intergenic | 40.0% | |
| TGTACACTTGAAAAGGGATC+TGG | + | chr1.4:34056900-34056919 | MS.gene43312:intron | 40.0% | |
| TTGTAAGATGACGACGTTGA+AGG | + | chr1.4:34058006-34058025 | MS.gene43312:intron | 40.0% | |
| ! | GTCTTGTGTCCTTGACTTTT+GGG | - | chr1.4:34057076-34057095 | None:intergenic | 40.0% |
| ! | TGTCTTGTGTCCTTGACTTT+TGG | - | chr1.4:34057077-34057096 | None:intergenic | 40.0% |
| !! | ATAATGGGCAACAACATCAG+AGG | + | chr1.4:34056775-34056794 | MS.gene43312:CDS | 40.0% |
| !!! | GGCACACACCCTTATTTTAT+AGG | + | chr1.4:34058180-34058199 | MS.gene43312:intron | 40.0% |
| CAACAAGCTTGCGATGAGTT+TGG | + | chr1.4:34058779-34058798 | MS.gene43312:CDS | 45.0% | |
| GCGATTAAAGAGGAAGGAAG+AGG | - | chr1.4:34058279-34058298 | None:intergenic | 45.0% | |
| GGATGATGATCCTGTTGAAG+AGG | + | chr1.4:34056744-34056763 | MS.gene43312:CDS | 45.0% | |
| TGCAAGCGGTAAGTATAAGG+TGG | + | chr1.4:34058448-34058467 | MS.gene43312:intron | 45.0% | |
| TGGGCTATGTCGGGTTATAT+TGG | + | chr1.4:34057242-34057261 | MS.gene43312:intron | 45.0% | |
| TTCGGAGCGATTAAAGAGGA+AGG | - | chr1.4:34058285-34058304 | None:intergenic | 45.0% | |
| ! | TTGTGTCCTTGACTTTTGGG+TGG | - | chr1.4:34057073-34057092 | None:intergenic | 45.0% |
| !! | AATAATATTATGATAAAAAT+AGG | - | chr1.4:34056937-34056956 | None:intergenic | 5.0% |
| !!! | AATTTTTATGATTTATTAAA+CGG | + | chr1.4:34057452-34057471 | MS.gene43312:intron | 5.0% |
| GTCGGGTTATATTGGAGAGC+CGG | + | chr1.4:34057250-34057269 | MS.gene43312:intron | 50.0% | |
| TCGGGTTATATTGGAGAGCC+GGG | + | chr1.4:34057251-34057270 | MS.gene43312:intron | 50.0% | |
| ! | CTTTAGAAGAACCTGGTCCC+CGG | - | chr1.4:34057272-34057291 | None:intergenic | 50.0% |
| CGGGTTATATTGGAGAGCCG+GGG | + | chr1.4:34057252-34057271 | MS.gene43312:intron | 55.0% | |
| ATATTGGAGAGCCGGGGACC+AGG | + | chr1.4:34057258-34057277 | MS.gene43312:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 34056742 | 34058943 | 34056742 | ID=MS.gene43312 |
| chr1.4 | mRNA | 34056742 | 34058943 | 34056742 | ID=MS.gene43312.t1;Parent=MS.gene43312 |
| chr1.4 | exon | 34056742 | 34056873 | 34056742 | ID=MS.gene43312.t1.exon1;Parent=MS.gene43312.t1 |
| chr1.4 | CDS | 34056742 | 34056873 | 34056742 | ID=cds.MS.gene43312.t1;Parent=MS.gene43312.t1 |
| chr1.4 | exon | 34058629 | 34058943 | 34058629 | ID=MS.gene43312.t1.exon2;Parent=MS.gene43312.t1 |
| chr1.4 | CDS | 34058629 | 34058943 | 34058629 | ID=cds.MS.gene43312.t1;Parent=MS.gene43312.t1 |
| Gene Sequence |
| Protein sequence |
