Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43431.t1 | RHN65114.1 | 77.7 | 561 | 125 | 0 | 1 | 561 | 1 | 561 | 7.20E-177 | 630.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43431.t1 | Q9FWW5 | 37.2 | 333 | 191 | 5 | 5 | 323 | 11 | 339 | 1.9e-37 | 158.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43431.t1 | A0A396ILB0 | 77.7 | 561 | 125 | 0 | 1 | 561 | 1 | 561 | 5.2e-177 | 630.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049452 | MS.gene43431 | 0.814654 | 1.38E-51 | -1.69E-46 |
| MS.gene050953 | MS.gene43431 | 0.803922 | 2.77E-49 | -1.69E-46 |
| MS.gene051181 | MS.gene43431 | 0.806197 | 9.25E-50 | -1.69E-46 |
| MS.gene051368 | MS.gene43431 | 0.839781 | 1.29E-57 | -1.69E-46 |
| MS.gene055701 | MS.gene43431 | 0.80058 | 1.35E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene43431 | 0.800818 | 1.21E-48 | -1.69E-46 |
| MS.gene057208 | MS.gene43431 | 0.82407 | 9.85E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene43431 | 0.836265 | 1.04E-56 | -1.69E-46 |
| MS.gene060011 | MS.gene43431 | 0.82045 | 6.82E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85146 | MS.gene43431 | PPI |
| MS.gene79559 | MS.gene43431 | PPI |
| MS.gene85145 | MS.gene43431 | PPI |
| MS.gene021743 | MS.gene43431 | PPI |
| MS.gene045052 | MS.gene43431 | PPI |
| MS.gene65337 | MS.gene43431 | PPI |
| MS.gene86539 | MS.gene43431 | PPI |
| MS.gene64896 | MS.gene43431 | PPI |
| MS.gene86533 | MS.gene43431 | PPI |
| MS.gene069865 | MS.gene43431 | PPI |
| MS.gene36347 | MS.gene43431 | PPI |
| MS.gene070627 | MS.gene43431 | PPI |
| MS.gene76530 | MS.gene43431 | PPI |
| MS.gene36348 | MS.gene43431 | PPI |
| MS.gene72664 | MS.gene43431 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43431.t1 | MTR_4g134110 | 95.187 | 561 | 27 | 0 | 1 | 561 | 1 | 561 | 0.0 | 995 |
| MS.gene43431.t1 | MTR_2g027130 | 58.772 | 570 | 218 | 6 | 2 | 557 | 11 | 577 | 0.0 | 551 |
| MS.gene43431.t1 | MTR_4g133450 | 94.081 | 321 | 19 | 0 | 241 | 561 | 5 | 325 | 0.0 | 536 |
| MS.gene43431.t1 | MTR_3g060660 | 44.723 | 559 | 280 | 10 | 6 | 541 | 14 | 566 | 1.56e-96 | 308 |
| MS.gene43431.t1 | MTR_3g060660 | 42.642 | 530 | 280 | 8 | 30 | 541 | 32 | 555 | 6.65e-81 | 266 |
| MS.gene43431.t1 | MTR_5g096080 | 38.448 | 567 | 312 | 10 | 6 | 543 | 15 | 573 | 3.59e-76 | 254 |
| MS.gene43431.t1 | MTR_3g007920 | 38.938 | 565 | 302 | 9 | 11 | 543 | 20 | 573 | 1.13e-74 | 250 |
| MS.gene43431.t1 | MTR_1g019490 | 26.510 | 596 | 355 | 18 | 5 | 540 | 259 | 831 | 3.44e-13 | 73.2 |
| MS.gene43431.t1 | MTR_3g101660 | 27.227 | 595 | 352 | 22 | 1 | 540 | 281 | 849 | 1.21e-12 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43431.t1 | AT1G12150 | 46.679 | 557 | 259 | 9 | 5 | 545 | 11 | 545 | 1.61e-123 | 374 |
| MS.gene43431.t1 | AT1G12150 | 46.679 | 557 | 259 | 9 | 5 | 545 | 11 | 545 | 1.61e-123 | 374 |
| MS.gene43431.t1 | AT5G55860 | 40.747 | 562 | 300 | 9 | 6 | 543 | 14 | 566 | 7.88e-79 | 261 |
| MS.gene43431.t1 | AT4G17210 | 32.496 | 557 | 309 | 9 | 7 | 543 | 17 | 526 | 1.59e-60 | 209 |
| MS.gene43431.t1 | AT2G26570 | 27.645 | 586 | 358 | 20 | 2 | 540 | 156 | 722 | 1.93e-19 | 92.8 |
| MS.gene43431.t1 | AT2G26570 | 27.645 | 586 | 358 | 20 | 2 | 540 | 156 | 722 | 1.93e-19 | 92.8 |
| MS.gene43431.t1 | AT4G33390 | 26.949 | 590 | 339 | 17 | 14 | 541 | 156 | 715 | 1.26e-11 | 68.2 |
Find 96 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCATATTCATTCTTTA+AGG | 0.132312 | 8.4:+748622 | None:intergenic |
| TTGTTTCCTCAACAGCTTTC+AGG | 0.144522 | 8.4:+747832 | None:intergenic |
| CAAGTTTCGCGTCTAGATTT+TGG | 0.198421 | 8.4:+748588 | None:intergenic |
| AAAGCTGCTGTTAGTTTATT+TGG | 0.205244 | 8.4:-749651 | MS.gene43431:CDS |
| GATAATCTTCATCTCTTTAA+TGG | 0.206604 | 8.4:+748049 | None:intergenic |
| AGCCTTTCTGCTCATCTCTT+TGG | 0.236137 | 8.4:+748184 | None:intergenic |
| CTCAATCTCTGCACTTGTTT+CGG | 0.295156 | 8.4:+748565 | None:intergenic |
| GGCTGAAGCTGTGAGGAATA+AGG | 0.309488 | 8.4:-749008 | MS.gene43431:CDS |
| ACCCTATCCCTAAAAGTTAT+AGG | 0.313601 | 8.4:-748968 | MS.gene43431:CDS |
| CGGCAATTGAACGTGAATTA+AGG | 0.320877 | 8.4:-747755 | MS.gene43431:CDS |
| CTGTCTCCGATTGTAGCTTC+TGG | 0.322489 | 8.4:+748225 | None:intergenic |
| CGCTTTGATTGCTGATTCCT+TGG | 0.325341 | 8.4:+749030 | None:intergenic |
| GAGAAAATACTAGCTTCTTA+AGG | 0.329746 | 8.4:+748423 | None:intergenic |
| CTGCTTCTTCAGCCGCTGCT+CGG | 0.339770 | 8.4:+748132 | None:intergenic |
| AACATCCTGCAGTGTCTTTG+TGG | 0.340359 | 8.4:+748463 | None:intergenic |
| TGCTTTAACTTTCGTGGTCT+CGG | 0.344082 | 8.4:+749123 | None:intergenic |
| CTCTCGATTTCAAAATTTAG+TGG | 0.349735 | 8.4:-748008 | MS.gene43431:CDS |
| GGCAAAGCTAGCAGCACTGC+AGG | 0.355322 | 8.4:-748822 | MS.gene43431:CDS |
| GTGCTCTATCGATGCTTTCA+TGG | 0.374865 | 8.4:+748727 | None:intergenic |
| TAACAGCAGCTTTGACAGAT+TGG | 0.377262 | 8.4:+749661 | None:intergenic |
| TTCTCTCACATTGTTCAGCT+TGG | 0.378811 | 8.4:+749054 | None:intergenic |
| AGCAAGAACTCACGAAAATC+AGG | 0.398382 | 8.4:-748868 | MS.gene43431:CDS |
| AGAAAATACTAGCTTCTTAA+GGG | 0.410056 | 8.4:+748424 | None:intergenic |
| TGCTTCTTCAGCCGCTGCTC+GGG | 0.410829 | 8.4:+748133 | None:intergenic |
| CTAGCAGCACTGCAGGCAAC+AGG | 0.421103 | 8.4:-748815 | MS.gene43431:CDS |
| CAAACTCTCAAGGGTCTCCT+TGG | 0.423083 | 8.4:+749081 | None:intergenic |
| ATCGGTGAAGATGTACTATC+AGG | 0.427441 | 8.4:+747720 | None:intergenic |
| AGTGAAGGAATACCAAGAAT+TGG | 0.430131 | 8.4:-747940 | MS.gene43431:CDS |
| GCTGAAGCTGTGAGGAATAA+GGG | 0.430229 | 8.4:-749007 | MS.gene43431:CDS |
| CAAAATTTAGTGGTAAGATC+AGG | 0.437222 | 8.4:-747998 | MS.gene43431:CDS |
| TTATCTGAACAATCTGATAT+CGG | 0.442943 | 8.4:+747702 | None:intergenic |
| GGAAAGTGCTTTAACTTTCG+TGG | 0.447771 | 8.4:+749117 | None:intergenic |
| CTGCAAAATTTAACTCAGAA+AGG | 0.449552 | 8.4:-748778 | MS.gene43431:CDS |
| AAAGAAAGAGGCAGCTATCA+TGG | 0.460393 | 8.4:-747913 | MS.gene43431:CDS |
| CGAAACAAGTGCAGAGATTG+AGG | 0.462554 | 8.4:-748564 | MS.gene43431:CDS |
| TTGCTTGGAAGAATCTAGTT+CGG | 0.465635 | 8.4:+748886 | None:intergenic |
| CTGCAATGGAGACGGCTTTG+TGG | 0.473961 | 8.4:-747806 | MS.gene43431:CDS |
| GAAGAGGCGGGGCCTCAGCC+AGG | 0.487515 | 8.4:-748290 | MS.gene43431:CDS |
| ATCTCTCCAACCTCTCCCCT+TGG | 0.489793 | 8.4:+749702 | None:intergenic |
| AAAGCTTCATGCTTCCAAGA+TGG | 0.490345 | 8.4:-748522 | MS.gene43431:CDS |
| AGAGATGAGCAGAAAGGCTC+AGG | 0.494120 | 8.4:-748180 | MS.gene43431:CDS |
| GCATCCACGGTACCTGGCTG+AGG | 0.500220 | 8.4:+748278 | None:intergenic |
| GATTCTCCAAGGGGAGAGGT+TGG | 0.507507 | 8.4:-749708 | MS.gene43431:CDS |
| GAAGAGTTTGAGTCACTGAA+TGG | 0.508477 | 8.4:-747966 | MS.gene43431:CDS |
| GCTTGGTTGTCAAACTCTCA+AGG | 0.509583 | 8.4:+749071 | None:intergenic |
| AAGTTTCACAGAATCCATCT+TGG | 0.515653 | 8.4:+748508 | None:intergenic |
| TTGACAGCGAATCTGTCCTT+AGG | 0.517593 | 8.4:+749615 | None:intergenic |
| ACATTGGCATCCACGGTACC+TGG | 0.522638 | 8.4:+748272 | None:intergenic |
| GGCTTTGTGGTATGTAGAGA+TGG | 0.523525 | 8.4:-747793 | MS.gene43431:CDS |
| AAAGGAGACACAGCTTATCC+TGG | 0.526439 | 8.4:-749188 | MS.gene43431:CDS |
| TCTGCAGAACGTATTTGAAA+AGG | 0.526723 | 8.4:-749206 | MS.gene43431:intron |
| TGAGGAAACAAAGGCTGCAA+TGG | 0.535827 | 8.4:-747820 | MS.gene43431:CDS |
| TAAAATCCAGAAGCTACAAT+CGG | 0.536535 | 8.4:-748231 | MS.gene43431:CDS |
| TGGTGAAGTAGCAGTTCCTA+AGG | 0.542024 | 8.4:-749631 | MS.gene43431:CDS |
| AGCTAACCTGAAAGCTGTTG+AGG | 0.545144 | 8.4:-747838 | MS.gene43431:CDS |
| CTCCTTGGCCTTCTCAAGGT+CGG | 0.546026 | 8.4:+749096 | None:intergenic |
| AAGTTATAGGATATGAAGCT+TGG | 0.546034 | 8.4:-748955 | MS.gene43431:CDS |
| GGGTCTCCTTGGCCTTCTCA+AGG | 0.547497 | 8.4:+749092 | None:intergenic |
| GAGCAAAGATATGAGAAAGG+TGG | 0.550127 | 8.4:-749730 | None:intergenic |
| TTAGAGCAAAGATATGAGAA+AGG | 0.552619 | 8.4:-749733 | None:intergenic |
| GAAAGAGCAAGATGAGCTGA+AGG | 0.554843 | 8.4:-748375 | MS.gene43431:CDS |
| AGCTGAAGCATCCCGAGCAG+CGG | 0.556164 | 8.4:-748144 | MS.gene43431:CDS |
| AACAAAGGCTGCAATGGAGA+CGG | 0.559947 | 8.4:-747814 | MS.gene43431:CDS |
| GGTGGATTCTCCAAGGGGAG+AGG | 0.568728 | 8.4:-749712 | MS.gene43431:CDS |
| AAAAGAGCGCGGAAGAGGCG+GGG | 0.571475 | 8.4:-748301 | MS.gene43431:CDS |
| AAGAAACGAGTACACGACTA+AGG | 0.572909 | 8.4:-748912 | MS.gene43431:CDS |
| AGCCAAAGAGATGAGCAGAA+AGG | 0.575074 | 8.4:-748186 | MS.gene43431:CDS |
| GAACAATGTGAGAGAATCCA+AGG | 0.577444 | 8.4:-749047 | MS.gene43431:CDS |
| AGCACTTTCCGACCTTGAGA+AGG | 0.580366 | 8.4:-749104 | MS.gene43431:CDS |
| GTCACTGAATGGAAAAGTGA+AGG | 0.582811 | 8.4:-747955 | MS.gene43431:CDS |
| GATCTTGCTTCTAACCTCAC+TGG | 0.583636 | 8.4:-748332 | MS.gene43431:CDS |
| CTTGGTTGTCAAACTCTCAA+GGG | 0.592536 | 8.4:+749072 | None:intergenic |
| AGAATTGGCAGAAAAGAAAG+AGG | 0.594912 | 8.4:-747925 | MS.gene43431:CDS |
| GTAGAAGACATTGGCATCCA+CGG | 0.595783 | 8.4:+748265 | None:intergenic |
| TTCCGACCTTGAGAAGGCCA+AGG | 0.596478 | 8.4:-749098 | MS.gene43431:CDS |
| TGAGAAAGGTGGATTCTCCA+AGG | 0.601503 | 8.4:-749719 | MS.gene43431:CDS |
| GAAAGCTGTTGAGGAAACAA+AGG | 0.603568 | 8.4:-747829 | MS.gene43431:CDS |
| GAGAAAGGTGGATTCTCCAA+GGG | 0.604164 | 8.4:-749718 | MS.gene43431:CDS |
| GCTATCATGGCTGAGTTGCA+AGG | 0.607203 | 8.4:-747900 | MS.gene43431:CDS |
| AAATGAATTAGACATAAAGG+TGG | 0.613977 | 8.4:-747862 | MS.gene43431:CDS |
| AGAACTCACGAAAATCAGGC+AGG | 0.613981 | 8.4:-748864 | MS.gene43431:CDS |
| AGAAGCCACAAAGACACTGC+AGG | 0.623758 | 8.4:-748468 | MS.gene43431:CDS |
| GATGGCAAATTCTGCAAAAG+CGG | 0.626557 | 8.4:-747775 | MS.gene43431:CDS |
| GGGGCCTCAGCCAGGTACCG+TGG | 0.637542 | 8.4:-748282 | MS.gene43431:CDS |
| GGTTGGAGAGATTGACACAA+GGG | 0.639933 | 8.4:-749691 | MS.gene43431:CDS |
| AAATTTAACTCAGAAAGGAT+CGG | 0.640420 | 8.4:-748773 | MS.gene43431:CDS |
| ACTTTGCATGTAGAAGACAT+TGG | 0.657532 | 8.4:+748256 | None:intergenic |
| GCAGCTTTGACAGATTGGAA+TGG | 0.664413 | 8.4:+749666 | None:intergenic |
| AGTTGCAAGGAATGTACACA+AGG | 0.668978 | 8.4:-747887 | MS.gene43431:CDS |
| AGGTTGGAGAGATTGACACA+AGG | 0.675431 | 8.4:-749692 | MS.gene43431:CDS |
| AAGGATCGGTGAACTCTCAG+AGG | 0.679076 | 8.4:-748759 | MS.gene43431:CDS |
| TGTCAAGAGAAGATCGTCAG+AGG | 0.688771 | 8.4:-749598 | MS.gene43431:intron |
| TCAAAGCGGCTGAAGCTGTG+AGG | 0.688806 | 8.4:-749015 | MS.gene43431:CDS |
| AGAAAGGTGGATTCTCCAAG+GGG | 0.690833 | 8.4:-749717 | MS.gene43431:CDS |
| CGAGAGTCTACTTTGCACGT+CGG | 0.708077 | 8.4:+748025 | None:intergenic |
| CAAGGAATCAGCAATCAAAG+CGG | 0.736218 | 8.4:-749029 | MS.gene43431:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAATTTATACCATAT+TGG | - | chr8.4:747838-747857 | MS.gene43431:CDS | 10.0% |
| !! | TGTATAAAAAAAATCCAATA+TGG | + | chr8.4:747855-747874 | None:intergenic | 15.0% |
| !!! | TAACTTACATAATTCTTTTT+GGG | + | chr8.4:748238-748257 | None:intergenic | 15.0% |
| !!! | TTAACTTACATAATTCTTTT+TGG | + | chr8.4:748239-748258 | None:intergenic | 15.0% |
| !!! | TTTTATACATATTGTTTCAT+AGG | - | chr8.4:747866-747885 | MS.gene43431:CDS | 15.0% |
| !! | ATCATCATATTCATTCTTTA+AGG | + | chr8.4:748781-748800 | None:intergenic | 20.0% |
| !! | GAAAAATGAATTAGACATAA+AGG | - | chr8.4:749535-749554 | MS.gene43431:intron | 20.0% |
| !!! | TTCATATCCTATAACTTTTA+GGG | + | chr8.4:748442-748461 | None:intergenic | 20.0% |
| ! | AAATGAATTAGACATAAAGG+TGG | - | chr8.4:749538-749557 | MS.gene43431:intron | 25.0% |
| ! | AAATTTAACTCAGAAAGGAT+CGG | - | chr8.4:748627-748646 | MS.gene43431:CDS | 25.0% |
| ! | GATAATCTTCATCTCTTTAA+TGG | + | chr8.4:749354-749373 | None:intergenic | 25.0% |
| ! | TTATCTGAACAATCTGATAT+CGG | + | chr8.4:749701-749720 | None:intergenic | 25.0% |
| !! | AGAAAATACTAGCTTCTTAA+GGG | + | chr8.4:748979-748998 | None:intergenic | 25.0% |
| !! | CTTCATATCCTATAACTTTT+AGG | + | chr8.4:748443-748462 | None:intergenic | 25.0% |
| !!! | AGTTTTGTAAAAGTCGAATT+GGG | + | chr8.4:748727-748746 | None:intergenic | 25.0% |
| !!! | CATCAAAACATTTTAATCCT+AGG | - | chr8.4:747938-747957 | MS.gene43431:CDS | 25.0% |
| AAACAAGTTTCACACTTCTT+TGG | - | chr8.4:748168-748187 | MS.gene43431:CDS | 30.0% | |
| AAGTTATAGGATATGAAGCT+TGG | - | chr8.4:748445-748464 | MS.gene43431:CDS | 30.0% | |
| CAAAATTTAGTGGTAAGATC+AGG | - | chr8.4:749402-749421 | MS.gene43431:intron | 30.0% | |
| CTCTCGATTTCAAAATTTAG+TGG | - | chr8.4:749392-749411 | MS.gene43431:intron | 30.0% | |
| CTGCAAAATTTAACTCAGAA+AGG | - | chr8.4:748622-748641 | MS.gene43431:CDS | 30.0% | |
| TAAAATCCAGAAGCTACAAT+CGG | - | chr8.4:749169-749188 | MS.gene43431:CDS | 30.0% | |
| TGACACACAAACAATACAAA+AGG | - | chr8.4:748045-748064 | MS.gene43431:CDS | 30.0% | |
| ! | AAAGCTGCTGTTAGTTTATT+TGG | - | chr8.4:747749-747768 | MS.gene43431:CDS | 30.0% |
| ! | AAGAAGTGTGAAACTTGTTT+AGG | + | chr8.4:748168-748187 | None:intergenic | 30.0% |
| ! | AGAAGCTAGTATTTTCTCTT+AGG | - | chr8.4:748982-749001 | MS.gene43431:CDS | 30.0% |
| ! | ATCCTAGGCATTTTAAATGT+TGG | - | chr8.4:747953-747972 | MS.gene43431:CDS | 30.0% |
| ! | GAGAAAATACTAGCTTCTTA+AGG | + | chr8.4:748980-748999 | None:intergenic | 30.0% |
| ! | TTCCAACATTTAAAATGCCT+AGG | + | chr8.4:747958-747977 | None:intergenic | 30.0% |
| !! | ATCCTATAACTTTTAGGGAT+AGG | + | chr8.4:748437-748456 | None:intergenic | 30.0% |
| !! | CAGTTTTGTAAAAGTCGAAT+TGG | + | chr8.4:748728-748747 | None:intergenic | 30.0% |
| !! | GAAAAAGCTAGAACTTGTTT+TGG | - | chr8.4:749292-749311 | MS.gene43431:intron | 30.0% |
| !! | TCCTATAACTTTTAGGGATA+GGG | + | chr8.4:748436-748455 | None:intergenic | 30.0% |
| !!! | TCTAGATTTTGGATTAGTTC+TGG | + | chr8.4:748804-748823 | None:intergenic | 30.0% |
| AAGTTTCACAGAATCCATCT+TGG | + | chr8.4:748895-748914 | None:intergenic | 35.0% | |
| ACCCTATCCCTAAAAGTTAT+AGG | - | chr8.4:748432-748451 | MS.gene43431:CDS | 35.0% | |
| ACTTTGCATGTAGAAGACAT+TGG | + | chr8.4:749147-749166 | None:intergenic | 35.0% | |
| AGAATTGGCAGAAAAGAAAG+AGG | - | chr8.4:749475-749494 | MS.gene43431:intron | 35.0% | |
| AGTGAAGGAATACCAAGAAT+TGG | - | chr8.4:749460-749479 | MS.gene43431:intron | 35.0% | |
| TCTGCAGAACGTATTTGAAA+AGG | - | chr8.4:748194-748213 | MS.gene43431:CDS | 35.0% | |
| TTCACACAATACCTGATGTT+AGG | - | chr8.4:748017-748036 | MS.gene43431:CDS | 35.0% | |
| TTGCTTGGAAGAATCTAGTT+CGG | + | chr8.4:748517-748536 | None:intergenic | 35.0% | |
| ! | AGAAGAAGCACAGAAAAAAC+TGG | - | chr8.4:748752-748771 | MS.gene43431:CDS | 35.0% |
| ! | CTTTCTTTTCTGCCAATTCT+TGG | + | chr8.4:749475-749494 | None:intergenic | 35.0% |
| ! | TCAGGTATTGTGTGAAACTT+TGG | + | chr8.4:748013-748032 | None:intergenic | 35.0% |
| !! | TACATAATTCTTTTTGGGCC+AGG | + | chr8.4:748233-748252 | None:intergenic | 35.0% |
| !!! | TCTTTTTCAATTCACCAGTG+AGG | + | chr8.4:749085-749104 | None:intergenic | 35.0% |
| AAAGAAAGAGGCAGCTATCA+TGG | - | chr8.4:749487-749506 | MS.gene43431:intron | 40.0% | |
| AAAGCTTCATGCTTCCAAGA+TGG | - | chr8.4:748878-748897 | MS.gene43431:CDS | 40.0% | |
| AAGAAACGAGTACACGACTA+AGG | - | chr8.4:748488-748507 | MS.gene43431:CDS | 40.0% | |
| AGCAAGAACTCACGAAAATC+AGG | - | chr8.4:748532-748551 | MS.gene43431:CDS | 40.0% | |
| AGTTGCAAGGAATGTACACA+AGG | - | chr8.4:749513-749532 | MS.gene43431:intron | 40.0% | |
| ATCGGTGAAGATGTACTATC+AGG | + | chr8.4:749683-749702 | None:intergenic | 40.0% | |
| CAAGGAATCAGCAATCAAAG+CGG | - | chr8.4:748371-748390 | MS.gene43431:CDS | 40.0% | |
| CGGCAATTGAACGTGAATTA+AGG | - | chr8.4:749645-749664 | MS.gene43431:CDS | 40.0% | |
| CTCAATCTCTGCACTTGTTT+CGG | + | chr8.4:748838-748857 | None:intergenic | 40.0% | |
| CTTGGTTGTCAAACTCTCAA+GGG | + | chr8.4:748331-748350 | None:intergenic | 40.0% | |
| GAAAGCTGTTGAGGAAACAA+AGG | - | chr8.4:749571-749590 | MS.gene43431:intron | 40.0% | |
| GAACAATGTGAGAGAATCCA+AGG | - | chr8.4:748353-748372 | MS.gene43431:CDS | 40.0% | |
| GAAGAGTTTGAGTCACTGAA+TGG | - | chr8.4:749434-749453 | MS.gene43431:intron | 40.0% | |
| GATGGCAAATTCTGCAAAAG+CGG | - | chr8.4:749625-749644 | MS.gene43431:CDS | 40.0% | |
| GGCAAAAACAGCAGAACAAA+AGG | - | chr8.4:749328-749347 | MS.gene43431:intron | 40.0% | |
| GTCACTGAATGGAAAAGTGA+AGG | - | chr8.4:749445-749464 | MS.gene43431:intron | 40.0% | |
| GTGTCAAATTGCCTAACATC+AGG | + | chr8.4:748031-748050 | None:intergenic | 40.0% | |
| TGGTGAATTGAAAAAGAGCG+CGG | - | chr8.4:749088-749107 | MS.gene43431:CDS | 40.0% | |
| TTCTCTCACATTGTTCAGCT+TGG | + | chr8.4:748349-748368 | None:intergenic | 40.0% | |
| TTGTTTCCTCAACAGCTTTC+AGG | + | chr8.4:749571-749590 | None:intergenic | 40.0% | |
| ! | AAAGTTTTTCCCATGACGAG+AGG | + | chr8.4:748072-748091 | None:intergenic | 40.0% |
| ! | AAGTTTTTCCCATGACGAGA+GGG | + | chr8.4:748071-748090 | None:intergenic | 40.0% |
| ! | AGAAGCACAGAAAAAACTGG+AGG | - | chr8.4:748755-748774 | MS.gene43431:CDS | 40.0% |
| ! | AGGGATAGGGTCTTTTCAAA+TGG | + | chr8.4:748423-748442 | None:intergenic | 40.0% |
| ! | CAAGTTTCGCGTCTAGATTT+TGG | + | chr8.4:748815-748834 | None:intergenic | 40.0% |
| ! | GATTTTCGTGAGTTCTTGCT+TGG | + | chr8.4:748532-748551 | None:intergenic | 40.0% |
| ! | TAACAGCAGCTTTGACAGAT+TGG | + | chr8.4:747742-747761 | None:intergenic | 40.0% |
| ! | TGCTTTAACTTTCGTGGTCT+CGG | + | chr8.4:748280-748299 | None:intergenic | 40.0% |
| ! | TTGGGTTTCATTTTGTGCAG+AGG | + | chr8.4:748709-748728 | None:intergenic | 40.0% |
| !! | GCAGGATTTTGATGCAGTTT+TGG | - | chr8.4:748554-748573 | MS.gene43431:CDS | 40.0% |
| !! | GGAAAGTGCTTTAACTTTCG+TGG | + | chr8.4:748286-748305 | None:intergenic | 40.0% |
| !! | GGATTTTGATGCAGTTTTGG+AGG | - | chr8.4:748557-748576 | MS.gene43431:CDS | 40.0% |
| !!! | GCTAGAACTTGTTTTGGAAG+AGG | - | chr8.4:749298-749317 | MS.gene43431:intron | 40.0% |
| !!! | TGTTTTGGAAGAGGCTAAAG+AGG | - | chr8.4:749307-749326 | MS.gene43431:intron | 40.0% |
| AAAGGAGACACAGCTTATCC+TGG | - | chr8.4:748212-748231 | MS.gene43431:CDS | 45.0% | |
| AACAAAGGCTGCAATGGAGA+CGG | - | chr8.4:749586-749605 | MS.gene43431:intron | 45.0% | |
| AACATCCTGCAGTGTCTTTG+TGG | + | chr8.4:748940-748959 | None:intergenic | 45.0% | |
| AGAACTCACGAAAATCAGGC+AGG | - | chr8.4:748536-748555 | MS.gene43431:CDS | 45.0% | |
| AGCCAAAGAGATGAGCAGAA+AGG | - | chr8.4:749214-749233 | MS.gene43431:intron | 45.0% | |
| AGCCTTTCTGCTCATCTCTT+TGG | + | chr8.4:749219-749238 | None:intergenic | 45.0% | |
| AGCTAACCTGAAAGCTGTTG+AGG | - | chr8.4:749562-749581 | MS.gene43431:intron | 45.0% | |
| AGGTTGGAGAGATTGACACA+AGG | - | chr8.4:747708-747727 | MS.gene43431:CDS | 45.0% | |
| CGAAACAAGTGCAGAGATTG+AGG | - | chr8.4:748836-748855 | MS.gene43431:CDS | 45.0% | |
| GAAAGAGCAAGATGAGCTGA+AGG | - | chr8.4:749025-749044 | MS.gene43431:CDS | 45.0% | |
| GATCTTGCTTCTAACCTCAC+TGG | - | chr8.4:749068-749087 | MS.gene43431:CDS | 45.0% | |
| GCTGAAGCTGTGAGGAATAA+GGG | - | chr8.4:748393-748412 | MS.gene43431:CDS | 45.0% | |
| GCTTGGTTGTCAAACTCTCA+AGG | + | chr8.4:748332-748351 | None:intergenic | 45.0% | |
| GGTTGGAGAGATTGACACAA+GGG | - | chr8.4:747709-747728 | MS.gene43431:CDS | 45.0% | |
| GTAGAAGACATTGGCATCCA+CGG | + | chr8.4:749138-749157 | None:intergenic | 45.0% | |
| GTGCTCTATCGATGCTTTCA+TGG | + | chr8.4:748676-748695 | None:intergenic | 45.0% | |
| TGAGGAAACAAAGGCTGCAA+TGG | - | chr8.4:749580-749599 | MS.gene43431:intron | 45.0% | |
| TGGTGAAGTAGCAGTTCCTA+AGG | - | chr8.4:747769-747788 | MS.gene43431:CDS | 45.0% | |
| TGTCAAGAGAAGATCGTCAG+AGG | - | chr8.4:747802-747821 | MS.gene43431:CDS | 45.0% | |
| TTGACAGCGAATCTGTCCTT+AGG | + | chr8.4:747788-747807 | None:intergenic | 45.0% | |
| ! | AGAAAGGTGGATTCTCCAAG+GGG | - | chr8.4:747683-747702 | MS.gene43431:CDS | 45.0% |
| ! | ATTGAAAAAGAGCGCGGAAG+AGG | - | chr8.4:749094-749113 | MS.gene43431:CDS | 45.0% |
| ! | GAGAAAGGTGGATTCTCCAA+GGG | - | chr8.4:747682-747701 | MS.gene43431:CDS | 45.0% |
| ! | GCAGCTTTGACAGATTGGAA+TGG | + | chr8.4:747737-747756 | None:intergenic | 45.0% |
| ! | GGCTTTGTGGTATGTAGAGA+TGG | - | chr8.4:749607-749626 | MS.gene43431:CDS | 45.0% |
| ! | TGAGAAAGGTGGATTCTCCA+AGG | - | chr8.4:747681-747700 | MS.gene43431:CDS | 45.0% |
| !! | CGCTTTGATTGCTGATTCCT+TGG | + | chr8.4:748373-748392 | None:intergenic | 45.0% |
| AAGGATCGGTGAACTCTCAG+AGG | - | chr8.4:748641-748660 | MS.gene43431:CDS | 50.0% | |
| ACAAAAGGCCCTCTCGTCAT+GGG | - | chr8.4:748060-748079 | MS.gene43431:CDS | 50.0% | |
| AGAAGCCACAAAGACACTGC+AGG | - | chr8.4:748932-748951 | MS.gene43431:CDS | 50.0% | |
| AGAGATGAGCAGAAAGGCTC+AGG | - | chr8.4:749220-749239 | MS.gene43431:intron | 50.0% | |
| AGCACTTTCCGACCTTGAGA+AGG | - | chr8.4:748296-748315 | MS.gene43431:CDS | 50.0% | |
| CAAACTCTCAAGGGTCTCCT+TGG | + | chr8.4:748322-748341 | None:intergenic | 50.0% | |
| CGAGAGTCTACTTTGCACGT+CGG | + | chr8.4:749378-749397 | None:intergenic | 50.0% | |
| CTGTCTCCGATTGTAGCTTC+TGG | + | chr8.4:749178-749197 | None:intergenic | 50.0% | |
| GCTATCATGGCTGAGTTGCA+AGG | - | chr8.4:749500-749519 | MS.gene43431:intron | 50.0% | |
| GGCTGAAGCTGTGAGGAATA+AGG | - | chr8.4:748392-748411 | MS.gene43431:CDS | 50.0% | |
| TACAAAAGGCCCTCTCGTCA+TGG | - | chr8.4:748059-748078 | MS.gene43431:CDS | 50.0% | |
| ACATTGGCATCCACGGTACC+TGG | + | chr8.4:749131-749150 | None:intergenic | 55.0% | |
| ATCTCTCCAACCTCTCCCCT+TGG | + | chr8.4:747701-747720 | None:intergenic | 55.0% | |
| CTGCAATGGAGACGGCTTTG+TGG | - | chr8.4:749594-749613 | MS.gene43431:intron | 55.0% | |
| GATTCTCCAAGGGGAGAGGT+TGG | - | chr8.4:747692-747711 | MS.gene43431:CDS | 55.0% | |
| TCAAAGCGGCTGAAGCTGTG+AGG | - | chr8.4:748385-748404 | MS.gene43431:CDS | 55.0% | |
| TTCCGACCTTGAGAAGGCCA+AGG | - | chr8.4:748302-748321 | MS.gene43431:CDS | 55.0% | |
| ! | AAAAAGAGCGCGGAAGAGGC+GGG | - | chr8.4:749098-749117 | MS.gene43431:CDS | 55.0% |
| ! | CTCCTTGGCCTTCTCAAGGT+CGG | + | chr8.4:748307-748326 | None:intergenic | 55.0% |
| ! | GAAAAAGAGCGCGGAAGAGG+CGG | - | chr8.4:749097-749116 | MS.gene43431:CDS | 55.0% |
| CTAGCAGCACTGCAGGCAAC+AGG | - | chr8.4:748585-748604 | MS.gene43431:CDS | 60.0% | |
| CTGCTTCTTCAGCCGCTGCT+CGG | + | chr8.4:749271-749290 | None:intergenic | 60.0% | |
| GGCAAAGCTAGCAGCACTGC+AGG | - | chr8.4:748578-748597 | MS.gene43431:CDS | 60.0% | |
| TGCTTCTTCAGCCGCTGCTC+GGG | + | chr8.4:749270-749289 | None:intergenic | 60.0% | |
| ! | AAAAGAGCGCGGAAGAGGCG+GGG | - | chr8.4:749099-749118 | MS.gene43431:CDS | 60.0% |
| ! | AGCTGAAGCATCCCGAGCAG+CGG | - | chr8.4:749256-749275 | MS.gene43431:intron | 60.0% |
| ! | GGGTCTCCTTGGCCTTCTCA+AGG | + | chr8.4:748311-748330 | None:intergenic | 60.0% |
| ! | GGTGGATTCTCCAAGGGGAG+AGG | - | chr8.4:747688-747707 | MS.gene43431:CDS | 60.0% |
| GCATCCACGGTACCTGGCTG+AGG | + | chr8.4:749125-749144 | None:intergenic | 65.0% | |
| GAAGAGGCGGGGCCTCAGCC+AGG | - | chr8.4:749110-749129 | MS.gene43431:CDS | 75.0% | |
| ! | GGGGCCTCAGCCAGGTACCG+TGG | - | chr8.4:749118-749137 | MS.gene43431:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 747680 | 749742 | 747680 | ID=MS.gene43431 |
| chr8.4 | mRNA | 747680 | 749742 | 747680 | ID=MS.gene43431.t1;Parent=MS.gene43431 |
| chr8.4 | exon | 749599 | 749742 | 749599 | ID=MS.gene43431.t1.exon1;Parent=MS.gene43431.t1 |
| chr8.4 | CDS | 749599 | 749742 | 749599 | ID=cds.MS.gene43431.t1;Parent=MS.gene43431.t1 |
| chr8.4 | exon | 747680 | 749221 | 747680 | ID=MS.gene43431.t1.exon2;Parent=MS.gene43431.t1 |
| chr8.4 | CDS | 747680 | 749221 | 747680 | ID=cds.MS.gene43431.t1;Parent=MS.gene43431.t1 |
| Gene Sequence |
| Protein sequence |
