AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43853

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43853.t1 MTR_2g095730 93.762 513 27 1 1 513 1 508 0.0 998
MS.gene43853.t1 MTR_2g095750 80.435 506 87 5 1 501 1 499 0.0 831
MS.gene43853.t1 MTR_2g095710 79.441 501 84 6 1 501 1 482 0.0 790
MS.gene43853.t1 MTR_4g057585 64.026 467 154 7 43 501 34 494 0.0 612
MS.gene43853.t1 MTR_1g094155 59.681 501 188 6 22 513 5 500 0.0 608
MS.gene43853.t1 MTR_4g057595 63.734 466 157 7 42 502 38 496 0.0 606
MS.gene43853.t1 MTR_4g057600 61.311 473 173 6 34 502 28 494 0.0 588
MS.gene43853.t1 MTR_1g050545 64.474 456 152 7 51 501 32 482 0.0 580
MS.gene43853.t1 MTR_4g057570 56.871 473 187 10 37 501 28 491 2.41e-177 508
MS.gene43853.t1 MTR_5g097180 32.401 429 265 10 90 508 32 445 9.33e-66 220
MS.gene43853.t1 MTR_4g084710 32.126 414 258 8 95 500 39 437 6.10e-63 212
MS.gene43853.t1 MTR_3g079560 30.070 429 256 14 99 508 92 495 3.79e-50 179
MS.gene43853.t1 MTR_3g079590 29.345 443 281 12 77 508 74 495 9.51e-50 178
MS.gene43853.t1 MTR_3g079570 28.764 445 280 12 77 508 75 495 4.09e-49 176
MS.gene43853.t1 MTR_3g434850 29.302 430 254 12 99 500 44 451 2.03e-47 171
MS.gene43853.t1 MTR_1g020090 29.047 451 278 13 69 501 69 495 3.86e-47 171
MS.gene43853.t1 MTR_2g018590 28.217 443 251 15 101 500 49 467 3.59e-46 168
MS.gene43853.t1 MTR_8g011350 27.158 475 269 11 85 499 35 492 5.98e-46 168
MS.gene43853.t1 MTR_2g063000 26.974 456 291 14 71 499 19 459 1.59e-45 166
MS.gene43853.t1 MTR_3g034290 29.929 421 259 16 96 499 85 486 1.90e-45 166
MS.gene43853.t1 MTR_3g079600 27.027 518 328 15 9 504 3 492 4.27e-45 166
MS.gene43853.t1 MTR_7g021130 28.404 426 262 15 101 500 46 454 1.53e-44 163
MS.gene43853.t1 MTR_1g021010 29.048 420 256 13 99 501 90 484 2.19e-44 163
MS.gene43853.t1 MTR_7g051430 26.350 463 265 14 99 499 44 492 2.98e-44 163
MS.gene43853.t1 MTR_2g062990 27.358 424 266 12 99 499 54 458 3.97e-44 162
MS.gene43853.t1 MTR_8g099930 26.698 427 274 14 99 500 47 459 5.75e-44 162
MS.gene43853.t1 MTR_2g081620 27.934 426 261 12 99 499 55 459 6.90e-44 162
MS.gene43853.t1 MTR_3g498755 27.336 428 267 14 101 500 31 442 9.26e-44 160
MS.gene43853.t1 MTR_7g051430 35.686 255 145 5 99 348 44 284 1.16e-43 160
MS.gene43853.t1 MTR_4g122950 27.126 435 273 14 97 499 51 473 1.23e-43 161
MS.gene43853.t1 MTR_3g079630 27.938 451 277 15 77 504 74 499 1.33e-43 161
MS.gene43853.t1 MTR_3g079620 28.953 449 271 13 76 501 73 496 6.53e-43 159
MS.gene43853.t1 MTR_2g062980 26.506 415 281 11 99 499 54 458 1.05e-42 158
MS.gene43853.t1 MTR_1g021020 28.019 414 267 10 99 501 92 485 1.05e-42 159
MS.gene43853.t1 MTR_4g122960 26.744 430 279 12 97 499 51 471 1.17e-42 158
MS.gene43853.t1 MTR_7g080180 36.131 274 152 8 84 348 31 290 4.61e-42 156
MS.gene43853.t1 MTR_7g080180 36.131 274 152 8 84 348 31 290 9.28e-42 156
MS.gene43853.t1 MTR_1g095560 28.842 423 264 15 99 500 47 453 1.31e-41 155
MS.gene43853.t1 MTR_4g075150 29.117 419 272 14 99 500 48 458 9.22e-41 153
MS.gene43853.t1 MTR_2g018630 27.660 423 271 14 101 500 53 463 1.90e-40 152
MS.gene43853.t1 MTR_8g011350 38.356 219 125 4 85 298 35 248 3.11e-40 152
MS.gene43853.t1 MTR_4g075150 28.979 421 272 14 99 500 48 460 3.72e-40 151
MS.gene43853.t1 MTR_0003s0560 28.266 421 274 14 91 499 79 483 1.64e-39 150
MS.gene43853.t1 MTR_1g040370 28.155 412 239 16 101 500 46 412 3.34e-39 147
MS.gene43853.t1 MTR_1g095560 27.778 450 266 17 99 500 47 485 4.13e-39 149
MS.gene43853.t1 MTR_2g449850 25.740 439 268 15 94 500 47 459 9.43e-39 147
MS.gene43853.t1 MTR_3g090130 26.608 451 271 13 91 500 22 453 1.43e-38 147
MS.gene43853.t1 MTR_4g089155 25.290 431 284 12 96 500 64 482 1.71e-38 147
MS.gene43853.t1 MTR_4g021535 28.019 414 252 15 113 497 65 461 2.27e-38 146
MS.gene43853.t1 MTR_4g021530 28.193 415 250 15 113 497 69 465 3.70e-38 145
MS.gene43853.t1 MTR_1g095540 27.014 422 273 13 99 500 47 453 4.60e-38 145
MS.gene43853.t1 MTR_5g072570 25.822 426 288 14 96 500 40 458 1.99e-37 144
MS.gene43853.t1 MTR_3g100420 25.845 503 309 13 36 497 12 491 3.63e-37 143
MS.gene43853.t1 MTR_2g018600 35.961 203 123 4 101 298 50 250 4.16e-37 143
MS.gene43853.t1 MTR_2g012850 25.995 427 278 12 99 500 49 462 1.25e-36 141
MS.gene43853.t1 MTR_2g012860 25.459 436 287 13 91 500 47 470 3.38e-36 140
MS.gene43853.t1 MTR_3g090150 25.647 425 288 9 96 500 44 460 3.39e-36 140
MS.gene43853.t1 MTR_4g021520 26.651 424 270 14 101 497 56 465 8.37e-36 139
MS.gene43853.t1 MTR_3g034290 30.178 338 206 14 96 417 85 408 1.13e-35 137
MS.gene43853.t1 MTR_3g045770 26.464 461 280 15 72 501 21 453 4.17e-35 137
MS.gene43853.t1 MTR_4g021500 26.389 432 266 13 113 512 69 480 5.12e-35 140
MS.gene43853.t1 MTR_4g021500 36.649 191 113 5 113 298 504 691 3.54e-30 125
MS.gene43853.t1 MTR_4g021500 26.450 431 267 12 113 512 69 480 5.16e-35 140
MS.gene43853.t1 MTR_4g021500 25.472 424 232 13 113 497 504 882 6.30e-34 137
MS.gene43853.t1 MTR_4g021490 27.053 414 256 14 113 497 69 465 7.18e-35 136
MS.gene43853.t1 MTR_7g013790 25.173 433 269 13 101 500 51 461 1.67e-34 135
MS.gene43853.t1 MTR_4g021510 37.549 253 132 10 57 298 18 255 1.00e-33 133
MS.gene43853.t1 MTR_2g063000 24.229 454 275 14 71 499 19 428 2.07e-32 129
MS.gene43853.t1 MTR_4g021520 38.235 204 117 6 101 298 56 256 2.28e-32 129
MS.gene43853.t1 MTR_0003s0560 33.498 203 131 4 91 291 79 279 1.09e-30 122
MS.gene43853.t1 MTR_2g009200 24.788 472 254 18 71 498 21 435 1.92e-29 120
MS.gene43853.t1 MTR_4g056520 26.402 428 257 14 112 498 44 454 1.52e-27 115
MS.gene43853.t1 MTR_2g084530 27.791 421 248 16 112 493 44 447 9.21e-27 113
MS.gene43853.t1 MTR_2g018630 24.860 358 239 12 161 500 13 358 1.49e-23 102
MS.gene43853.t1 MTR_4g021535 24.155 414 221 17 113 497 65 414 1.91e-19 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43853.t1 AT3G10410 60.200 500 177 8 14 501 7 496 0.0 620
MS.gene43853.t1 AT3G45010 59.804 510 190 7 1 503 1 502 0.0 615
MS.gene43853.t1 AT5G22980 60.120 499 181 7 17 504 7 498 0.0 597
MS.gene43853.t1 AT5G22960 61.310 168 44 3 93 260 28 174 1.22e-64 208
MS.gene43853.t1 AT2G22970 29.438 445 268 18 71 500 18 431 3.34e-52 183
MS.gene43853.t1 AT2G22920 30.405 444 265 18 71 499 18 432 3.38e-52 183
MS.gene43853.t1 AT1G15000 31.159 414 257 11 95 500 31 424 5.98e-52 183
MS.gene43853.t1 AT3G25420 28.838 482 256 17 84 500 33 492 4.44e-51 182
MS.gene43853.t1 AT1G73300 29.864 442 270 16 71 500 26 439 1.50e-50 179
MS.gene43853.t1 AT1G73300 29.864 442 270 16 71 500 26 439 1.50e-50 179
MS.gene43853.t1 AT3G12203 26.877 413 268 12 100 500 24 414 1.17e-49 176
MS.gene43853.t1 AT4G12910 27.917 480 259 15 84 499 38 494 1.39e-49 178
MS.gene43853.t1 AT3G12203 26.877 413 268 12 100 500 45 435 1.40e-49 176
MS.gene43853.t1 AT3G12203 27.318 399 256 12 114 500 1 377 5.74e-49 173
MS.gene43853.t1 AT2G22970 31.510 384 224 15 71 440 18 376 1.15e-48 173
MS.gene43853.t1 AT2G22970 29.330 433 261 17 71 488 18 420 1.62e-48 174
MS.gene43853.t1 AT5G36180 28.959 442 274 15 71 500 26 439 2.37e-48 173
MS.gene43853.t1 AT2G22920 32.031 384 224 15 71 440 18 378 4.26e-48 172
MS.gene43853.t1 AT1G73290 27.765 443 276 15 71 500 25 436 8.01e-48 172
MS.gene43853.t1 AT2G23010 28.855 454 263 20 71 500 18 435 1.01e-47 171
MS.gene43853.t1 AT3G12240 29.257 417 254 16 100 500 43 434 1.44e-47 171
MS.gene43853.t1 AT2G23010 28.855 454 263 20 71 500 18 435 2.23e-47 170
MS.gene43853.t1 AT1G73280 27.602 442 280 14 71 500 26 439 4.81e-47 169
MS.gene43853.t1 AT1G73270 26.862 443 282 15 71 500 26 439 1.24e-46 168
MS.gene43853.t1 AT1G73270 26.862 443 282 15 71 500 26 439 1.63e-46 168
MS.gene43853.t1 AT3G10450 28.140 430 272 14 83 500 31 435 2.34e-46 167
MS.gene43853.t1 AT2G22980 27.438 441 278 16 71 500 19 428 2.62e-46 167
MS.gene43853.t1 AT1G73290 29.581 382 232 12 71 440 25 381 1.37e-45 165
MS.gene43853.t1 AT3G10450 27.561 410 264 12 103 500 4 392 2.59e-45 164
MS.gene43853.t1 AT4G15100 27.021 433 271 13 99 499 58 477 2.77e-45 166
MS.gene43853.t1 AT4G12910 32.537 335 197 11 84 407 38 354 3.34e-45 165
MS.gene43853.t1 AT3G12220 26.794 418 265 14 100 501 42 434 7.60e-45 163
MS.gene43853.t1 AT1G73310 28.281 442 277 15 71 500 26 439 1.30e-44 163
MS.gene43853.t1 AT3G12230 28.297 417 258 15 100 500 42 433 1.44e-44 162
MS.gene43853.t1 AT3G17180 27.617 449 255 15 96 500 50 472 2.06e-44 163
MS.gene43853.t1 AT3G12220 27.160 405 254 14 113 501 25 404 3.65e-44 161
MS.gene43853.t1 AT2G22990 27.902 448 273 17 71 500 16 431 7.43e-44 160
MS.gene43853.t1 AT5G23210 28.018 439 268 14 99 500 65 492 7.70e-44 162
MS.gene43853.t1 AT2G23000 28.029 421 256 15 101 500 41 435 7.71e-44 160
MS.gene43853.t1 AT2G23000 28.029 421 256 15 101 500 41 435 7.71e-44 160
MS.gene43853.t1 AT2G22920 35.032 314 177 12 71 376 18 312 7.78e-44 157
MS.gene43853.t1 AT2G22980 27.103 428 271 15 71 487 19 416 2.64e-43 159
MS.gene43853.t1 AT2G22980 27.512 418 262 15 71 477 19 406 2.75e-43 159
MS.gene43853.t1 AT1G11080 27.189 434 271 13 99 499 64 485 3.20e-43 160
MS.gene43853.t1 AT1G11080 27.189 434 271 13 99 499 64 485 3.79e-43 160
MS.gene43853.t1 AT1G61130 28.302 424 269 14 99 499 45 456 5.64e-43 159
MS.gene43853.t1 AT5G08260 29.698 431 250 17 99 493 53 466 6.93e-43 159
MS.gene43853.t1 AT1G28110 26.824 425 272 13 99 499 45 454 8.93e-43 158
MS.gene43853.t1 AT1G28110 26.824 425 272 13 99 499 45 454 8.93e-43 158
MS.gene43853.t1 AT2G22970 34.069 317 181 12 71 379 18 314 1.30e-42 154
MS.gene43853.t1 AT4G30810 25.986 431 269 12 97 499 50 458 4.88e-42 157
MS.gene43853.t1 AT1G73290 36.596 235 134 7 71 299 25 250 1.09e-41 152
MS.gene43853.t1 AT3G10450 27.764 407 258 13 83 477 31 413 1.15e-41 154
MS.gene43853.t1 AT2G35770 28.395 405 262 10 101 490 54 445 1.39e-41 155
MS.gene43853.t1 AT3G52000 28.537 410 270 13 99 498 78 474 2.29e-41 155
MS.gene43853.t1 AT5G23210 40.196 204 117 5 99 298 65 267 3.10e-41 154
MS.gene43853.t1 AT2G33530 27.040 429 270 13 99 500 47 459 4.12e-41 154
MS.gene43853.t1 AT1G73310 29.504 383 233 13 71 440 26 384 8.13e-41 152
MS.gene43853.t1 AT3G07990 28.604 437 253 17 96 500 45 454 1.24e-40 152
MS.gene43853.t1 AT3G10450 27.132 387 250 11 103 477 4 370 1.72e-40 150
MS.gene43853.t1 AT1G33540 25.935 428 279 13 101 500 45 462 1.75e-40 152
MS.gene43853.t1 AT2G24010 28.506 435 273 13 84 500 34 448 2.49e-40 151
MS.gene43853.t1 AT1G33540 25.822 426 278 13 103 500 4 419 5.98e-40 150
MS.gene43853.t1 AT2G22990 28.604 437 245 18 71 479 16 413 8.31e-40 149
MS.gene43853.t1 AT2G22990 28.637 433 244 18 71 477 16 409 8.67e-40 150
MS.gene43853.t1 AT4G30610 26.389 432 274 14 97 500 44 459 2.39e-39 149
MS.gene43853.t1 AT3G63470 28.814 413 256 16 99 493 95 487 2.44e-39 150
MS.gene43853.t1 AT3G52010 27.083 432 278 14 84 498 68 479 6.05e-39 148
MS.gene43853.t1 AT3G52020 25.781 512 319 17 17 498 13 493 9.05e-39 148
MS.gene43853.t1 AT1G73280 36.481 233 135 6 71 298 26 250 1.21e-38 145
MS.gene43853.t1 AT2G22980 32.911 316 178 12 71 376 19 310 4.38e-38 143
MS.gene43853.t1 AT5G09640 25.910 467 287 19 71 500 19 463 6.12e-38 145
MS.gene43853.t1 AT2G35780 27.123 424 272 15 97 500 42 448 1.15e-37 144
MS.gene43853.t1 AT2G22990 26.562 448 270 18 71 500 16 422 6.63e-37 141
MS.gene43853.t1 AT1G43780 28.375 437 254 17 101 500 53 467 9.58e-37 142
MS.gene43853.t1 AT2G24000 26.726 449 271 17 84 499 34 457 1.87e-36 141
MS.gene43853.t1 AT3G12220 28.296 311 192 8 100 404 42 327 2.04e-36 139
MS.gene43853.t1 AT3G17180 33.469 245 143 8 96 332 50 282 3.51e-36 140
MS.gene43853.t1 AT5G42230 27.423 423 279 13 99 500 42 457 6.19e-36 139
MS.gene43853.t1 AT5G42230 27.423 423 279 13 99 500 42 457 6.19e-36 139
MS.gene43853.t1 AT2G12480 27.294 425 272 15 84 500 35 430 7.84e-36 139
MS.gene43853.t1 AT2G24010 27.333 450 274 14 84 500 34 463 1.26e-35 139
MS.gene43853.t1 AT2G12480 26.376 436 286 15 84 500 35 454 2.39e-35 138
MS.gene43853.t1 AT2G12480 27.123 424 272 15 84 500 35 428 3.91e-35 137
MS.gene43853.t1 AT5G42240 25.926 432 274 14 99 500 46 461 4.76e-35 137
MS.gene43853.t1 AT2G05850 25.885 452 290 16 67 498 53 479 4.66e-34 134
MS.gene43853.t1 AT5G23210 27.182 401 245 13 136 500 8 397 5.10e-34 133
MS.gene43853.t1 AT2G12480 27.059 425 272 15 84 500 35 429 6.94e-34 133
MS.gene43853.t1 AT5G23210 27.000 400 245 13 137 500 8 396 2.99e-33 130
MS.gene43853.t1 AT3G02110 24.773 440 267 13 101 500 53 468 1.60e-32 130
MS.gene43853.t1 AT2G24010 26.383 470 278 16 84 500 5 459 3.49e-32 129
MS.gene43853.t1 AT2G27920 27.059 425 250 14 112 493 45 452 1.30e-31 127
MS.gene43853.t1 AT5G36180 26.801 347 226 10 161 500 12 337 5.74e-31 123
MS.gene43853.t1 AT5G36180 26.801 347 226 10 161 500 12 337 5.74e-31 123
MS.gene43853.t1 AT5G23210 40.606 165 94 4 137 298 8 171 1.16e-30 122
MS.gene43853.t1 AT1G73280 25.360 347 231 9 161 500 12 337 3.13e-30 121
MS.gene43853.t1 AT3G56540 40.141 142 81 4 99 238 93 232 1.52e-28 114
MS.gene43853.t1 AT2G22990 26.074 349 204 13 173 500 2 317 2.55e-27 112
MS.gene43853.t1 AT2G24010 33.468 248 136 10 84 310 5 244 2.58e-27 113
MS.gene43853.t1 AT2G22990 26.074 349 204 13 173 500 2 317 5.89e-27 111
MS.gene43853.t1 AT5G36180 26.235 324 212 9 161 477 12 315 8.02e-27 111
MS.gene43853.t1 AT5G36180 27.972 286 185 7 161 440 12 282 2.67e-26 110
MS.gene43853.t1 AT1G73280 24.024 333 225 9 175 500 1 312 1.99e-25 107
MS.gene43853.t1 AT2G27920 25.622 402 231 15 135 493 4 380 3.16e-25 107
MS.gene43853.t1 AT1G73310 26.389 288 187 7 161 440 12 282 1.78e-24 104
MS.gene43853.t1 AT2G22980 23.794 311 208 9 173 477 2 289 1.64e-23 100
MS.gene43853.t1 AT2G27920 25.000 348 215 10 182 493 48 385 6.27e-19 89.4

Find 122 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTCTCTGGTATGTTTA+TGG 0.137565 2.2:-6197878 None:intergenic
ACAACATGGCATCATCTTTA+AGG 0.142828 2.2:+6197689 None:intergenic
ATACAACAAGAAAGTGATTT+TGG 0.209981 2.2:-6200265 None:intergenic
TATGCCTTGTACTGAATTTC+CGG 0.228537 2.2:-6199051 None:intergenic
TCCCTTGTTTGGAATGAATA+TGG 0.250663 2.2:+6198260 MS.gene43853:CDS
CTTCGTTTGCTTTGTTTCCT+TGG 0.259831 2.2:-6198855 None:intergenic
GTCAGGTCAGACAACATTTA+AGG 0.308088 2.2:+6199870 MS.gene43853:CDS
TGGACCTTTGGCCTTCCTTA+AGG 0.320499 2.2:+6199951 MS.gene43853:CDS
ACAAGAACTTGTCCCTTGTT+TGG 0.329032 2.2:+6198249 MS.gene43853:CDS
AATAAACAGGGCTTTGCTAT+TGG 0.339075 2.2:+6199012 MS.gene43853:intron
CACTTCAGATGTTACAAGAT+TGG 0.348561 2.2:+6200213 MS.gene43853:CDS
CGATTTGTATGACTTCTTGC+AGG 0.353476 2.2:+6198492 MS.gene43853:CDS
CAGGGCTTTGCTATTGGTAA+TGG 0.354719 2.2:+6199018 MS.gene43853:intron
CTCATTTGGTAGGGAATTCA+AGG 0.357235 2.2:+6199827 MS.gene43853:intron
TCTGAAAAGCCATGGACCTT+TGG 0.366511 2.2:+6199939 MS.gene43853:CDS
AGGCAATGGACTGATTAATA+AGG 0.371408 2.2:+6199089 MS.gene43853:CDS
AAACATTTACCTAGCAGCTT+TGG 0.372493 2.2:-6198019 None:intergenic
TAAAGGAAGCTTTAGGTGTT+GGG 0.376899 2.2:+6199579 MS.gene43853:CDS
ACAGCATACATTAGTGTTGC+CGG 0.385275 2.2:-6199373 None:intergenic
TTGTCCTTTGAGAACTGAAA+TGG 0.389190 2.2:-6198230 None:intergenic
CCTGTCGTCATATGGTTAAC+TGG 0.391322 2.2:+6198161 MS.gene43853:CDS
CCATTGCCTAATGCAAAATC+TGG 0.393249 2.2:-6199075 None:intergenic
GGTTATTCTGTTGAAGAACT+TGG 0.406042 2.2:+6197964 MS.gene43853:CDS
TGTCTGACCTGACCACTTCA+TGG 0.416219 2.2:-6199860 None:intergenic
CTTAGTACACGCTGCCTTGA+CGG 0.424079 2.2:+6199628 MS.gene43853:CDS
AAGAAATGTGAGGGAGCTTT+CGG 0.426372 2.2:+6199506 MS.gene43853:CDS
GGGAGCTTTCGGTGATTGTC+AGG 0.436170 2.2:+6199517 MS.gene43853:CDS
GGCTGGTCACATGGTTCCTA+TGG 0.441603 2.2:+6200175 MS.gene43853:CDS
GTAGACCAACCCATTGGATC+AGG 0.443437 2.2:+6198409 MS.gene43853:CDS
AGTCCTCTTATGAGAGTTGA+AGG 0.448595 2.2:-6197835 None:intergenic
GAGAAGAAGTTCACTTTCCC+TGG 0.449586 2.2:+6197928 MS.gene43853:CDS
CTTTGAATCTCGAAACAGTA+AGG 0.449789 2.2:+6198133 MS.gene43853:CDS
TCCCCTTCAACTCTCATAAG+AGG 0.452569 2.2:+6197832 MS.gene43853:CDS
ACGCTGCCTTGACGGAAGAT+TGG 0.455836 2.2:+6199636 MS.gene43853:CDS
AACATCTGAAGTGCAACTTT+TGG 0.458205 2.2:-6200203 None:intergenic
TTTGGGATGCAGTTGAAGAA+AGG 0.463192 2.2:-6197779 None:intergenic
TTTGGAATAATAGGTGAAAG+AGG 0.463792 2.2:+6200154 MS.gene43853:intron
AAGACAGTAAAGGAAGCTTT+AGG 0.467806 2.2:+6199572 MS.gene43853:CDS
GCAATTTCACTGCCGCATCC+TGG 0.467824 2.2:-6198188 None:intergenic
AAGGGGATGCAGTTGAAGAA+AGG 0.469788 2.2:-6197816 None:intergenic
TAAAAGACAGACACACTTTG+AGG 0.470510 2.2:-6197714 None:intergenic
ATTCCTGCTCTTCTTGAGGA+TGG 0.475493 2.2:+6199680 MS.gene43853:CDS
GAAGAACTTGGTCATCATGC+AGG 0.475724 2.2:+6197976 MS.gene43853:CDS
GTAAAGGAAGCTTTAGGTGT+TGG 0.480724 2.2:+6199578 MS.gene43853:CDS
TTGGTTGATAGTGAAGAAGC+AGG 0.485779 2.2:+6199913 MS.gene43853:CDS
AGGAATTCATATAAATCTAA+AGG 0.501724 2.2:+6198876 MS.gene43853:CDS
TCTTCTCCACAATGTTTCCA+TGG 0.501980 2.2:-6197912 None:intergenic
TACCTAGCAGCTTTGGAATG+AGG 0.502116 2.2:-6198012 None:intergenic
CTTGTACTGAATTTCCGGAT+TGG 0.507308 2.2:-6199046 None:intergenic
GGGTATTCCTGCTCTTCTTG+AGG 0.508272 2.2:+6199676 MS.gene43853:CDS
ATTTATCTGTTAGGCACTGA+AGG 0.510266 2.2:+6199285 MS.gene43853:intron
GTTGATCCCACCGTGTCTAA+AGG 0.511902 2.2:+6199134 MS.gene43853:CDS
AATCATTCTTTGTGAACTGA+GGG 0.514863 2.2:-6198771 None:intergenic
CGCCGTGATGAAGACAGTAT+TGG 0.518941 2.2:+6198466 MS.gene43853:CDS
CCAGTTAACCATATGACGAC+AGG 0.521891 2.2:-6198161 None:intergenic
ATGTCCAGCGTATGACTCTC+CGG 0.523072 2.2:-6198803 None:intergenic
GAATAATAGGTGAAAGAGGC+TGG 0.523981 2.2:+6200158 MS.gene43853:intron
ATGAAGGTGAAATGAAGAAG+AGG 0.524790 2.2:-6197753 None:intergenic
ATTCCATCCTCAAGAAGAGC+AGG 0.526347 2.2:-6199683 None:intergenic
AGGATGACCCTGTCGTCATA+TGG 0.526809 2.2:+6198153 MS.gene43853:CDS
TGGTAATGGATTAACCAATC+CGG 0.528504 2.2:+6199032 MS.gene43853:CDS
AGGACATGAGGATCATTCTC+TGG 0.531938 2.2:-6197889 None:intergenic
GATCTAATATGCAATTGGCT+TGG 0.534093 2.2:+6199734 MS.gene43853:CDS
ATGTTACAAGATTGGATGCA+AGG 0.542295 2.2:+6200221 MS.gene43853:CDS
ATATGGTTAACTGGAGGTCC+AGG 0.542845 2.2:+6198170 MS.gene43853:CDS
GTTGATGCCATGAAGTGGTC+AGG 0.543073 2.2:+6199853 MS.gene43853:CDS
CTTGAACATGAAGACAGTAA+AGG 0.545435 2.2:+6199562 MS.gene43853:CDS
AAATCATTCTTTGTGAACTG+AGG 0.546581 2.2:-6198772 None:intergenic
CAATCCGGAAATTCAGTACA+AGG 0.549343 2.2:+6199047 MS.gene43853:CDS
ATATTTGTAGACCAACCCAT+TGG 0.549517 2.2:+6198403 MS.gene43853:CDS
TTGTTTGGAATGAATATGGA+TGG 0.552020 2.2:+6198264 MS.gene43853:CDS
ATAGCTGAAACCTGATCCAA+TGG 0.556117 2.2:-6198419 None:intergenic
CTGCCGCCTTTAGACACGGT+GGG 0.565722 2.2:-6199140 None:intergenic
TGAACCCTAGATGCAAAAGC+TGG 0.566247 2.2:-6198832 None:intergenic
GTCCTCTTATGAGAGTTGAA+GGG 0.568698 2.2:-6197834 None:intergenic
TCCTCTTATGAGAGTTGAAG+GGG 0.569189 2.2:-6197833 None:intergenic
AAAGGAAGCTTTAGGTGTTG+GGG 0.573810 2.2:+6199580 MS.gene43853:CDS
AGTTGAAGAAAGGAGAATGA+AGG 0.577019 2.2:-6197769 None:intergenic
AATGATCCTCATGTCCTCCA+TGG 0.578894 2.2:+6197895 MS.gene43853:CDS
TGTTACAAGATTGGATGCAA+GGG 0.580202 2.2:+6200222 MS.gene43853:CDS
GCAGGAATTCTGAAAAGCCA+TGG 0.580565 2.2:+6199931 MS.gene43853:CDS
TTAACTGGAGGTCCAGGATG+CGG 0.584480 2.2:+6198176 MS.gene43853:CDS
GACATTAGAAAGAAATGTGA+GGG 0.586086 2.2:+6199497 MS.gene43853:CDS
TGGACCATTTCAGTTCTCAA+AGG 0.587532 2.2:+6198226 MS.gene43853:CDS
GGTGAAAGAGGCTGGTCACA+TGG 0.589518 2.2:+6200166 MS.gene43853:intron
TTTGGTAGGGAATTCAAGGT+GGG 0.590648 2.2:+6199831 MS.gene43853:intron
TAAGGAAGGCCAAAGGTCCA+TGG 0.590847 2.2:-6199948 None:intergenic
TTAAACACAAACCTTAAGGA+AGG 0.596840 2.2:-6199962 None:intergenic
ACTGAAGGTGGACAAGCATG+TGG 0.599485 2.2:+6199300 MS.gene43853:CDS
ATCCATATTCATTCCAAACA+AGG 0.604369 2.2:-6198262 None:intergenic
TTCCTCATTCCAAAGCTGCT+AGG 0.605027 2.2:+6198010 MS.gene43853:CDS
TAACCAGAGTCATCAAAACC+AGG 0.605492 2.2:-6197946 None:intergenic
TTTCATCCAATCTTCCGTCA+AGG 0.611684 2.2:-6199642 None:intergenic
TAGCTGAAACCTGATCCAAT+GGG 0.613889 2.2:-6198418 None:intergenic
TGAAACCTGATCCAATGGGT+TGG 0.614257 2.2:-6198414 None:intergenic
TTGTCAGGACTTCTCTGACA+TGG 0.615587 2.2:+6199532 MS.gene43853:CDS
GAATGAATATGGATGGGACA+AGG 0.625882 2.2:+6198271 MS.gene43853:CDS
GCGAATATCACTGTGAACAT+CGG 0.629348 2.2:-6198446 None:intergenic
ATGTTTCCATGGAGGACATG+AGG 0.630827 2.2:-6197901 None:intergenic
TATCTGTTAGGCACTGAAGG+TGG 0.631703 2.2:+6199288 MS.gene43853:intron
TATCAGATCACAAACATCAC+CGG 0.631908 2.2:+6199354 MS.gene43853:CDS
ATTTGGTAGGGAATTCAAGG+TGG 0.632416 2.2:+6199830 MS.gene43853:intron
AAGAACTTGGTCATCATGCA+GGG 0.634335 2.2:+6197977 MS.gene43853:CDS
TGTCCTCCATGGAAACATTG+TGG 0.634451 2.2:+6197906 MS.gene43853:CDS
TCCATATTCATTCCAAACAA+GGG 0.638155 2.2:-6198261 None:intergenic
CGACATTAGAAAGAAATGTG+AGG 0.647229 2.2:+6199496 MS.gene43853:CDS
AACCAGAGTCATCAAAACCA+GGG 0.649229 2.2:-6197945 None:intergenic
GTCGTCATATGGTTAACTGG+AGG 0.656929 2.2:+6198164 MS.gene43853:CDS
ATCAAGTTACTTGTGTACGC+CGG 0.657584 2.2:+6199704 MS.gene43853:CDS
CAGTTAACCATATGACGACA+GGG 0.657833 2.2:-6198160 None:intergenic
TGCCAATACTGTCTTCATCA+CGG 0.659820 2.2:-6198468 None:intergenic
GATCCCACCGTGTCTAAAGG+CGG 0.662660 2.2:+6199137 MS.gene43853:CDS
CTGAAGGTGGACAAGCATGT+GGG 0.668943 2.2:+6199301 MS.gene43853:CDS
TGTTTGGAATGAATATGGAT+GGG 0.672561 2.2:+6198265 MS.gene43853:CDS
TCTCCACAATGTTTCCATGG+AGG 0.678885 2.2:-6197909 None:intergenic
TCTGCCGCCTTTAGACACGG+TGG 0.679091 2.2:-6199141 None:intergenic
ATTACCGGAGAGTCATACGC+TGG 0.680484 2.2:+6198799 MS.gene43853:CDS
GGTGGGTTGATGCCATGAAG+TGG 0.684602 2.2:+6199848 MS.gene43853:CDS
AATATCACTGTGAACATCGG+TGG 0.689654 2.2:-6198443 None:intergenic
CAAGGAAACAAAGCAAACGA+AGG 0.691308 2.2:+6198856 MS.gene43853:CDS
TTTGCATCTAGGGTTCACCA+AGG 0.714240 2.2:+6198838 MS.gene43853:CDS
CAAACCTTAAGGAAGGCCAA+AGG 0.724280 2.2:-6199955 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTGGAATAAT+AGG + chr2.2:6200145-6200164 MS.gene43853:intron 10.0%
!! ATAAATTAAGAATGTCAATA+AGG - chr2.2:6199271-6199290 None:intergenic 15.0%
!! TGTTTATTATAAAAGATGAA+AGG - chr2.2:6199000-6199019 None:intergenic 15.0%
!!! AAGAATGATTTTTATATTAC+CGG + chr2.2:6198784-6198803 MS.gene43853:CDS 15.0%
!!! TTCATCTTTTATAATAAACA+GGG + chr2.2:6199000-6199019 MS.gene43853:intron 15.0%
!!! TTTCATCTTTTATAATAAAC+AGG + chr2.2:6198999-6199018 MS.gene43853:intron 15.0%
!! AAAAAGATCTAATATGCAAT+TGG + chr2.2:6199729-6199748 MS.gene43853:CDS 20.0%
!! ACATTCTTAATTTATCTGTT+AGG + chr2.2:6199276-6199295 MS.gene43853:intron 20.0%
!! AGGAATTCATATAAATCTAA+AGG + chr2.2:6198876-6198895 MS.gene43853:CDS 20.0%
!!! ACTTAAATTTTTACAATGAC+AGG + chr2.2:6198732-6198751 MS.gene43853:intron 20.0%
!!! ATTTGTATCTTGTTTAAGAT+TGG - chr2.2:6199778-6199797 None:intergenic 20.0%
!!! TTTTTTTACGAGAAATTAAG+TGG + chr2.2:6198580-6198599 MS.gene43853:intron 20.0%
! AAATTGGTAAAATTCTCTCT+TGG - chr2.2:6199223-6199242 None:intergenic 25.0%
! ACTAAAGTGGAAAAAAGAAA+AGG - chr2.2:6198316-6198335 None:intergenic 25.0%
! ATAACTGTATATTCCTACAA+AGG + chr2.2:6198924-6198943 MS.gene43853:intron 25.0%
! ATGCACACATTATTATTATG+TGG - chr2.2:6198058-6198077 None:intergenic 25.0%
! CTAAAGTGGAAAAAAGAAAA+GGG - chr2.2:6198315-6198334 None:intergenic 25.0%
! GATATAAAGTTTACCTTTGT+AGG - chr2.2:6198940-6198959 None:intergenic 25.0%
! GATTAATCACTTGAATTAAG+TGG + chr2.2:6198545-6198564 MS.gene43853:intron 25.0%
! TGACATAACAAATTGTTCAA+TGG - chr2.2:6198091-6198110 None:intergenic 25.0%
! TGCACACATTATTATTATGT+GGG - chr2.2:6198057-6198076 None:intergenic 25.0%
!! AAAGTAGCACTAAAAGTATA+AGG + chr2.2:6199405-6199424 MS.gene43853:intron 25.0%
!! ATACAACAAGAAAGTGATTT+TGG - chr2.2:6200268-6200287 None:intergenic 25.0%
!!! ATTGCCTTGTTTTATGAAAA+TGG + chr2.2:6198206-6198225 MS.gene43853:CDS 25.0%
!!! CTTTTTTCTTTCTCTTTTGT+AGG + chr2.2:6198369-6198388 MS.gene43853:intron 25.0%
!!! TTATGGAACTTTTAGGAAAA+AGG - chr2.2:6197864-6197883 None:intergenic 25.0%
AAATCATTCTTTGTGAACTG+AGG - chr2.2:6198775-6198794 None:intergenic 30.0%
AATCATTCTTTGTGAACTGA+GGG - chr2.2:6198774-6198793 None:intergenic 30.0%
ACGACATTACATACTATCTA+TGG + chr2.2:6198656-6198675 MS.gene43853:intron 30.0%
ATCATTCTCTGGTATGTTTA+TGG - chr2.2:6197881-6197900 None:intergenic 30.0%
ATCCATATTCATTCCAAACA+AGG - chr2.2:6198265-6198284 None:intergenic 30.0%
ATCCTTAAACACAAACCTTA+AGG - chr2.2:6199969-6199988 None:intergenic 30.0%
CTTCAAATTAAATGTGTGTC+TGG + chr2.2:6200040-6200059 MS.gene43853:intron 30.0%
GACATTAGAAAGAAATGTGA+GGG + chr2.2:6199497-6199516 MS.gene43853:CDS 30.0%
GCACACATTATTATTATGTG+GGG - chr2.2:6198056-6198075 None:intergenic 30.0%
TCAACCAAAAATGAAGTTGT+AGG - chr2.2:6199901-6199920 None:intergenic 30.0%
TCCATATTCATTCCAAACAA+GGG - chr2.2:6198264-6198283 None:intergenic 30.0%
TGGATGAAAAATCTTGAAGT+GGG + chr2.2:6199656-6199675 MS.gene43853:CDS 30.0%
TGTATCAGTTAGAACTAAAG+TGG - chr2.2:6198329-6198348 None:intergenic 30.0%
TTAAACACAAACCTTAAGGA+AGG - chr2.2:6199965-6199984 None:intergenic 30.0%
TTCCTTAAGGTTTGTGTTTA+AGG + chr2.2:6199964-6199983 MS.gene43853:intron 30.0%
TTGGATGAAAAATCTTGAAG+TGG + chr2.2:6199655-6199674 MS.gene43853:CDS 30.0%
! ACATGACTTGCACAATAAAT+TGG - chr2.2:6199239-6199258 None:intergenic 30.0%
! GCATATTAGATCTTTTTCTC+CGG - chr2.2:6199726-6199745 None:intergenic 30.0%
! GGTATGTTTATGGAACTTTT+AGG - chr2.2:6197871-6197890 None:intergenic 30.0%
! TGGTCCATTTTCATAAAACA+AGG - chr2.2:6198213-6198232 None:intergenic 30.0%
! TGTTTGGAATGAATATGGAT+GGG + chr2.2:6198265-6198284 MS.gene43853:CDS 30.0%
! TTGTTTGGAATGAATATGGA+TGG + chr2.2:6198264-6198283 MS.gene43853:CDS 30.0%
! TTTGGAATAATAGGTGAAAG+AGG + chr2.2:6200154-6200173 MS.gene43853:intron 30.0%
!! AAGGAGTATGTCATTGTTTT+TGG - chr2.2:6197800-6197819 None:intergenic 30.0%
!! AGGAGTATGTCATTGTTTTT+GGG - chr2.2:6197799-6197818 None:intergenic 30.0%
!! CAATTTGTTATGTCAATTGC+AGG + chr2.2:6198096-6198115 MS.gene43853:intron 30.0%
AAACATTTACCTAGCAGCTT+TGG - chr2.2:6198022-6198041 None:intergenic 35.0%
AAATGTGCTTCTCATTTGGT+AGG + chr2.2:6199817-6199836 MS.gene43853:intron 35.0%
AAGACAGTAAAGGAAGCTTT+AGG + chr2.2:6199572-6199591 MS.gene43853:CDS 35.0%
AATGTGCTTCTCATTTGGTA+GGG + chr2.2:6199818-6199837 MS.gene43853:intron 35.0%
AGTTGAAGAAAGGAGAATGA+AGG - chr2.2:6197772-6197791 None:intergenic 35.0%
ATATTTGTAGACCAACCCAT+TGG + chr2.2:6198403-6198422 MS.gene43853:CDS 35.0%
ATGAAGGTGAAATGAAGAAG+AGG - chr2.2:6197756-6197775 None:intergenic 35.0%
ATGTTACAAGATTGGATGCA+AGG + chr2.2:6200221-6200240 MS.gene43853:CDS 35.0%
CACTTCAGATGTTACAAGAT+TGG + chr2.2:6200213-6200232 MS.gene43853:CDS 35.0%
CGACATTAGAAAGAAATGTG+AGG + chr2.2:6199496-6199515 MS.gene43853:CDS 35.0%
CTCTAAATGTGCTTCTCATT+TGG + chr2.2:6199813-6199832 MS.gene43853:intron 35.0%
CTTGAACATGAAGACAGTAA+AGG + chr2.2:6199562-6199581 MS.gene43853:CDS 35.0%
CTTTGAATCTCGAAACAGTA+AGG + chr2.2:6198133-6198152 MS.gene43853:CDS 35.0%
GATCTAATATGCAATTGGCT+TGG + chr2.2:6199734-6199753 MS.gene43853:CDS 35.0%
GATGTATTCATGAGCATAAG+AGG + chr2.2:6199986-6200005 MS.gene43853:intron 35.0%
GGTTATTCTGTTGAAGAACT+TGG + chr2.2:6197964-6197983 MS.gene43853:CDS 35.0%
TAAAAGACAGACACACTTTG+AGG - chr2.2:6197717-6197736 None:intergenic 35.0%
TATCAGATCACAAACATCAC+CGG + chr2.2:6199354-6199373 MS.gene43853:CDS 35.0%
TATGCCTTGTACTGAATTTC+CGG - chr2.2:6199054-6199073 None:intergenic 35.0%
TGTTACAAGATTGGATGCAA+GGG + chr2.2:6200222-6200241 MS.gene43853:CDS 35.0%
! AATAAACAGGGCTTTGCTAT+TGG + chr2.2:6199012-6199031 MS.gene43853:intron 35.0%
! ACAATGACAGGCATTTTTCA+AGG + chr2.2:6198744-6198763 MS.gene43853:intron 35.0%
! GCATATCCAGATTTTGCATT+AGG + chr2.2:6199069-6199088 MS.gene43853:CDS 35.0%
! GTCTCCTACAACTTCATTTT+TGG + chr2.2:6199894-6199913 MS.gene43853:CDS 35.0%
! TCCCTTGTTTGGAATGAATA+TGG + chr2.2:6198260-6198279 MS.gene43853:CDS 35.0%
! TTGTCCTTTGAGAACTGAAA+TGG - chr2.2:6198233-6198252 None:intergenic 35.0%
!! AACATCTGAAGTGCAACTTT+TGG - chr2.2:6200206-6200225 None:intergenic 35.0%
!! AGGCAATGGACTGATTAATA+AGG + chr2.2:6199089-6199108 MS.gene43853:CDS 35.0%
!! ATTTATCTGTTAGGCACTGA+AGG + chr2.2:6199285-6199304 MS.gene43853:intron 35.0%
!! TAAAGGAAGCTTTAGGTGTT+GGG + chr2.2:6199579-6199598 MS.gene43853:CDS 35.0%
!! TGGTAATGGATTAACCAATC+CGG + chr2.2:6199032-6199051 MS.gene43853:CDS 35.0%
AACCAGAGTCATCAAAACCA+GGG - chr2.2:6197948-6197967 None:intergenic 40.0%
AAGAAATGTGAGGGAGCTTT+CGG + chr2.2:6199506-6199525 MS.gene43853:CDS 40.0%
AAGAACTTGGTCATCATGCA+GGG + chr2.2:6197977-6197996 MS.gene43853:CDS 40.0%
AATATCACTGTGAACATCGG+TGG - chr2.2:6198446-6198465 None:intergenic 40.0%
ACAAGAACTTGTCCCTTGTT+TGG + chr2.2:6198249-6198268 MS.gene43853:CDS 40.0%
ACAGCATACATTAGTGTTGC+CGG - chr2.2:6199376-6199395 None:intergenic 40.0%
AGTCCTCTTATGAGAGTTGA+AGG - chr2.2:6197838-6197857 None:intergenic 40.0%
ATAGCTGAAACCTGATCCAA+TGG - chr2.2:6198422-6198441 None:intergenic 40.0%
ATCAAGTTACTTGTGTACGC+CGG + chr2.2:6199704-6199723 MS.gene43853:CDS 40.0%
ATTTGGTAGGGAATTCAAGG+TGG + chr2.2:6199830-6199849 MS.gene43853:intron 40.0%
CAAGGAAACAAAGCAAACGA+AGG + chr2.2:6198856-6198875 MS.gene43853:CDS 40.0%
CAATCCGGAAATTCAGTACA+AGG + chr2.2:6199047-6199066 MS.gene43853:CDS 40.0%
CAGTTAACCATATGACGACA+GGG - chr2.2:6198163-6198182 None:intergenic 40.0%
CCATTGCCTAATGCAAAATC+TGG - chr2.2:6199078-6199097 None:intergenic 40.0%
CGATTTGTATGACTTCTTGC+AGG + chr2.2:6198492-6198511 MS.gene43853:CDS 40.0%
CTCATTTGGTAGGGAATTCA+AGG + chr2.2:6199827-6199846 MS.gene43853:intron 40.0%
CTTGTACTGAATTTCCGGAT+TGG - chr2.2:6199049-6199068 None:intergenic 40.0%
GAATAATAGGTGAAAGAGGC+TGG + chr2.2:6200158-6200177 MS.gene43853:intron 40.0%
GAATGAATATGGATGGGACA+AGG + chr2.2:6198271-6198290 MS.gene43853:CDS 40.0%
GCGAATATCACTGTGAACAT+CGG - chr2.2:6198449-6198468 None:intergenic 40.0%
GTCAGGTCAGACAACATTTA+AGG + chr2.2:6199870-6199889 MS.gene43853:CDS 40.0%
GTCCTCTTATGAGAGTTGAA+GGG - chr2.2:6197837-6197856 None:intergenic 40.0%
GTGTTTGACATATGTGTGTC+TGG + chr2.2:6200062-6200081 MS.gene43853:intron 40.0%
TAACCAGAGTCATCAAAACC+AGG - chr2.2:6197949-6197968 None:intergenic 40.0%
TAGCTGAAACCTGATCCAAT+GGG - chr2.2:6198421-6198440 None:intergenic 40.0%
TCCTCTTATGAGAGTTGAAG+GGG - chr2.2:6197836-6197855 None:intergenic 40.0%
TCTTCTCCACAATGTTTCCA+TGG - chr2.2:6197915-6197934 None:intergenic 40.0%
TGCCAATACTGTCTTCATCA+CGG - chr2.2:6198471-6198490 None:intergenic 40.0%
TGGACCATTTCAGTTCTCAA+AGG + chr2.2:6198226-6198245 MS.gene43853:CDS 40.0%
TTTCATCCAATCTTCCGTCA+AGG - chr2.2:6199645-6199664 None:intergenic 40.0%
TTTGGTAGGGAATTCAAGGT+GGG + chr2.2:6199831-6199850 MS.gene43853:intron 40.0%
! ACATTCCAGCTTTTGCATCT+AGG + chr2.2:6198827-6198846 MS.gene43853:CDS 40.0%
! CATTCCAGCTTTTGCATCTA+GGG + chr2.2:6198828-6198847 MS.gene43853:CDS 40.0%
! CCAGATTTTGCATTAGGCAA+TGG + chr2.2:6199075-6199094 MS.gene43853:CDS 40.0%
! TTTGGGATGCAGTTGAAGAA+AGG - chr2.2:6197782-6197801 None:intergenic 40.0%
!! AAAGGAAGCTTTAGGTGTTG+GGG + chr2.2:6199580-6199599 MS.gene43853:CDS 40.0%
!! CTTCGTTTGCTTTGTTTCCT+TGG - chr2.2:6198858-6198877 None:intergenic 40.0%
!! GCAACTTTTGGTTGATCCAT+AGG - chr2.2:6200194-6200213 None:intergenic 40.0%
!! GTAAAGGAAGCTTTAGGTGT+TGG + chr2.2:6199578-6199597 MS.gene43853:CDS 40.0%
!! TTGGTTGATAGTGAAGAAGC+AGG + chr2.2:6199913-6199932 MS.gene43853:CDS 40.0%
AAGGGGATGCAGTTGAAGAA+AGG - chr2.2:6197819-6197838 None:intergenic 45.0%
AATGATCCTCATGTCCTCCA+TGG + chr2.2:6197895-6197914 MS.gene43853:CDS 45.0%
AGGACATGAGGATCATTCTC+TGG - chr2.2:6197892-6197911 None:intergenic 45.0%
ATATGGTTAACTGGAGGTCC+AGG + chr2.2:6198170-6198189 MS.gene43853:CDS 45.0%
ATGTTTCCATGGAGGACATG+AGG - chr2.2:6197904-6197923 None:intergenic 45.0%
ATTCCATCCTCAAGAAGAGC+AGG - chr2.2:6199686-6199705 None:intergenic 45.0%
ATTCCTGCTCTTCTTGAGGA+TGG + chr2.2:6199680-6199699 MS.gene43853:CDS 45.0%
CAAACCTTAAGGAAGGCCAA+AGG - chr2.2:6199958-6199977 None:intergenic 45.0%
CCAGTTAACCATATGACGAC+AGG - chr2.2:6198164-6198183 None:intergenic 45.0%
CCTGTCGTCATATGGTTAAC+TGG + chr2.2:6198161-6198180 MS.gene43853:CDS 45.0%
CTAAAGGCGGCAGAAAAATG+TGG + chr2.2:6199150-6199169 MS.gene43853:CDS 45.0%
GAAGAACTTGGTCATCATGC+AGG + chr2.2:6197976-6197995 MS.gene43853:CDS 45.0%
GAGAAGAAGTTCACTTTCCC+TGG + chr2.2:6197928-6197947 MS.gene43853:CDS 45.0%
GTCGTCATATGGTTAACTGG+AGG + chr2.2:6198164-6198183 MS.gene43853:CDS 45.0%
TCCCCTTCAACTCTCATAAG+AGG + chr2.2:6197832-6197851 MS.gene43853:CDS 45.0%
TCTCCACAATGTTTCCATGG+AGG - chr2.2:6197912-6197931 None:intergenic 45.0%
TCTGAAAAGCCATGGACCTT+TGG + chr2.2:6199939-6199958 MS.gene43853:CDS 45.0%
TGAAACCTGATCCAATGGGT+TGG - chr2.2:6198417-6198436 None:intergenic 45.0%
TGAACCCTAGATGCAAAAGC+TGG - chr2.2:6198835-6198854 None:intergenic 45.0%
TGTCCTCCATGGAAACATTG+TGG + chr2.2:6197906-6197925 MS.gene43853:CDS 45.0%
TTCCTCATTCCAAAGCTGCT+AGG + chr2.2:6198010-6198029 MS.gene43853:CDS 45.0%
TTGTCAGGACTTCTCTGACA+TGG + chr2.2:6199532-6199551 MS.gene43853:CDS 45.0%
! GCAGGAATTCTGAAAAGCCA+TGG + chr2.2:6199931-6199950 MS.gene43853:CDS 45.0%
! GTGTATGTGTGTGTGTCGAT+TGG + chr2.2:6200084-6200103 MS.gene43853:intron 45.0%
! TTTGCATCTAGGGTTCACCA+AGG + chr2.2:6198838-6198857 MS.gene43853:CDS 45.0%
! TTTTCTGCCGCCTTTAGACA+CGG - chr2.2:6199147-6199166 None:intergenic 45.0%
!! CAGGGCTTTGCTATTGGTAA+TGG + chr2.2:6199018-6199037 MS.gene43853:intron 45.0%
!! TACCTAGCAGCTTTGGAATG+AGG - chr2.2:6198015-6198034 None:intergenic 45.0%
!! TATCTGTTAGGCACTGAAGG+TGG + chr2.2:6199288-6199307 MS.gene43853:intron 45.0%
!!! TTCCCTGGTTTTGATGACTC+TGG + chr2.2:6197943-6197962 MS.gene43853:CDS 45.0%
!!! TAACTATATATTTTTTTTTT+TGG + chr2.2:6200136-6200155 MS.gene43853:intron 5.0%
ACTGAAGGTGGACAAGCATG+TGG + chr2.2:6199300-6199319 MS.gene43853:CDS 50.0%
AGGATGACCCTGTCGTCATA+TGG + chr2.2:6198153-6198172 MS.gene43853:CDS 50.0%
ATGTCCAGCGTATGACTCTC+CGG - chr2.2:6198806-6198825 None:intergenic 50.0%
ATTACCGGAGAGTCATACGC+TGG + chr2.2:6198799-6198818 MS.gene43853:CDS 50.0%
CGCCGTGATGAAGACAGTAT+TGG + chr2.2:6198466-6198485 MS.gene43853:CDS 50.0%
CTGAAGGTGGACAAGCATGT+GGG + chr2.2:6199301-6199320 MS.gene43853:CDS 50.0%
CTTAGTACACGCTGCCTTGA+CGG + chr2.2:6199628-6199647 MS.gene43853:CDS 50.0%
GGGTATTCCTGCTCTTCTTG+AGG + chr2.2:6199676-6199695 MS.gene43853:CDS 50.0%
GTAGACCAACCCATTGGATC+AGG + chr2.2:6198409-6198428 MS.gene43853:CDS 50.0%
GTTGATCCCACCGTGTCTAA+AGG + chr2.2:6199134-6199153 MS.gene43853:CDS 50.0%
GTTGATGCCATGAAGTGGTC+AGG + chr2.2:6199853-6199872 MS.gene43853:CDS 50.0%
TAAGGAAGGCCAAAGGTCCA+TGG - chr2.2:6199951-6199970 None:intergenic 50.0%
TGTCTGACCTGACCACTTCA+TGG - chr2.2:6199863-6199882 None:intergenic 50.0%
TTAACTGGAGGTCCAGGATG+CGG + chr2.2:6198176-6198195 MS.gene43853:CDS 50.0%
! TGGACCTTTGGCCTTCCTTA+AGG + chr2.2:6199951-6199970 MS.gene43853:CDS 50.0%
ACGCTGCCTTGACGGAAGAT+TGG + chr2.2:6199636-6199655 MS.gene43853:CDS 55.0%
GATCCCACCGTGTCTAAAGG+CGG + chr2.2:6199137-6199156 MS.gene43853:CDS 55.0%
GCAATTTCACTGCCGCATCC+TGG - chr2.2:6198191-6198210 None:intergenic 55.0%
GGGAGCTTTCGGTGATTGTC+AGG + chr2.2:6199517-6199536 MS.gene43853:CDS 55.0%
! GGCTGGTCACATGGTTCCTA+TGG + chr2.2:6200175-6200194 MS.gene43853:CDS 55.0%
! GGTGAAAGAGGCTGGTCACA+TGG + chr2.2:6200166-6200185 MS.gene43853:intron 55.0%
!! GGTGGGTTGATGCCATGAAG+TGG + chr2.2:6199848-6199867 MS.gene43853:CDS 55.0%
CTGCCGCCTTTAGACACGGT+GGG - chr2.2:6199143-6199162 None:intergenic 60.0%
TCTGCCGCCTTTAGACACGG+TGG - chr2.2:6199144-6199163 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 6197694 6200289 6197694 ID=MS.gene43853
chr2.2 mRNA 6197694 6200289 6197694 ID=MS.gene43853.t1;Parent=MS.gene43853
chr2.2 exon 6197694 6198031 6197694 ID=MS.gene43853.t1.exon1;Parent=MS.gene43853.t1
chr2.2 CDS 6197694 6198031 6197694 ID=cds.MS.gene43853.t1;Parent=MS.gene43853.t1
chr2.2 exon 6198118 6198292 6198118 ID=MS.gene43853.t1.exon2;Parent=MS.gene43853.t1
chr2.2 CDS 6198118 6198292 6198118 ID=cds.MS.gene43853.t1;Parent=MS.gene43853.t1
chr2.2 exon 6198391 6198513 6198391 ID=MS.gene43853.t1.exon3;Parent=MS.gene43853.t1
chr2.2 CDS 6198391 6198513 6198391 ID=cds.MS.gene43853.t1;Parent=MS.gene43853.t1
chr2.2 exon 6198754 6198897 6198754 ID=MS.gene43853.t1.exon4;Parent=MS.gene43853.t1
chr2.2 CDS 6198754 6198897 6198754 ID=cds.MS.gene43853.t1;Parent=MS.gene43853.t1
chr2.2 exon 6199021 6199171 6199021 ID=MS.gene43853.t1.exon5;Parent=MS.gene43853.t1
chr2.2 CDS 6199021 6199171 6199021 ID=cds.MS.gene43853.t1;Parent=MS.gene43853.t1
chr2.2 exon 6199298 6199386 6199298 ID=MS.gene43853.t1.exon6;Parent=MS.gene43853.t1
chr2.2 CDS 6199298 6199386 6199298 ID=cds.MS.gene43853.t1;Parent=MS.gene43853.t1
chr2.2 exon 6199491 6199755 6199491 ID=MS.gene43853.t1.exon7;Parent=MS.gene43853.t1
chr2.2 CDS 6199491 6199755 6199491 ID=cds.MS.gene43853.t1;Parent=MS.gene43853.t1
chr2.2 exon 6199839 6199972 6199839 ID=MS.gene43853.t1.exon8;Parent=MS.gene43853.t1
chr2.2 CDS 6199839 6199972 6199839 ID=cds.MS.gene43853.t1;Parent=MS.gene43853.t1
chr2.2 exon 6200167 6200289 6200167 ID=MS.gene43853.t1.exon9;Parent=MS.gene43853.t1
chr2.2 CDS 6200167 6200289 6200167 ID=cds.MS.gene43853.t1;Parent=MS.gene43853.t1
Gene Sequence

>MS.gene43853

ATGGCATCATCTTTAAGGTTCCTCAAAGTGTGTCTGTCTTTTAAAATGTTGTTGCACTTCCTCTTCTTCATTTCACCTTCATTCTCCTTTCTTCAACTGCATCCCAAAAACAATGACATACTCCTTTCTTCAACTGCATCCCCTTCAACTCTCATAAGAGGACTTAACCTTTTTCCTAAAAGTTCCATAAACATACCAGAGAATGATCCTCATGTCCTCCATGGAAACATTGTGGAGAAGAAGTTCACTTTCCCTGGTTTTGATGACTCTGGTTATTCTGTTGAAGAACTTGGTCATCATGCAGGGTATTATAGTCTTCCTCATTCCAAAGCTGCTAGGTAAATGTTTTATCACTTTATCCCCACATAATAATAATGTGTGCATGAACATATTTCCATTGAACAATTTGTTATGTCAATTGCAGGATGTTCTATTTTTTCTTTGAATCTCGAAACAGTAAGGATGACCCTGTCGTCATATGGTTAACTGGAGGTCCAGGATGCGGCAGTGAAATTGCCTTGTTTTATGAAAATGGACCATTTCAGTTCTCAAAGGACAAGAACTTGTCCCTTGTTTGGAATGAATATGGATGGGACAAGGTAACAGCTATTCATTCTTCCCTTTTCTTTTTTCCACTTTAGTTCTAACTGATACATAATCATATTGCATCATATACTTTTTTCTTTCTCTTTTGTAGGCATCAAATATTATATTTGTAGACCAACCCATTGGATCAGGTTTCAGCTATACCACCGATGTTCACAGTGATATTCGCCGTGATGAAGACAGTATTGGCAACGATTTGTATGACTTCTTGCAGGTAACTTGATTTGTTCAGTACTTTATTAATTGATTAATCACTTGAATTAAGTGGTTAAATGACTTTTTTTTTTACGAGAAATTAAGTGGTTAAACTTGATTCATCGTTAGTTAGTACTTATATTTAATTTTAAAATTCAAAGACGACATTACATACTATCTATGGTTCTAAACTACAAATATTATGTTAAACTATGATGTTGTGCAAACATAAGTTCAACTTAAATTTTTACAATGACAGGCATTTTTCAAGGAACACCCTCAGTTCACAAAGAATGATTTTTATATTACCGGAGAGTCATACGCTGGACATTACATTCCAGCTTTTGCATCTAGGGTTCACCAAGGAAACAAAGCAAACGAAGGAATTCATATAAATCTAAAGGTATTATTATTACATTGTCATATAATATAACTGTATATTCCTACAAAGGTAAACTTTATATCAAAGTAATGCAAACTAATCACATTGATTGTATTAACTCCTTTCATCTTTTATAATAAACAGGGCTTTGCTATTGGTAATGGATTAACCAATCCGGAAATTCAGTACAAGGCATATCCAGATTTTGCATTAGGCAATGGACTGATTAATAAGGATGAATATGAAAGAATCAACAAGTTGATCCCACCGTGTCTAAAGGCGGCAGAAAAATGTGGTATAACATTGAGCTTTTTTCTCTTTCTCAGTCACAAATCACTTAGCACCAAGAGAGAATTTTACCAATTTATTGTGCAAGTCATGTGTTATTTTTCCTTATTGACATTCTTAATTTATCTGTTAGGCACTGAAGGTGGACAAGCATGTGGGACTGCATTAACTACTTGTATGAAAATATTCTATCAGATCACAAACATCACCGGCAACACTAATGTATGCTGTCAAAAAAGAAAAGTAGCACTAAAAGTATAAGGTAAAGATTGTATGAAAATAATGAAGTTTGAATACACTAATGCATTATGTTATTCGAACTGCAGTACTACGACATTAGAAAGAAATGTGAGGGAGCTTTCGGTGATTGTCAGGACTTCTCTGACATGGAGACATTCTTGAACATGAAGACAGTAAAGGAAGCTTTAGGTGTTGGGGACTTGATATTTGATTCTTGCAGTTTCTTAGTACACGCTGCCTTGACGGAAGATTGGATGAAAAATCTTGAAGTGGGTATTCCTGCTCTTCTTGAGGATGGAATCAAGTTACTTGTGTACGCCGGAGAAAAAGATCTAATATGCAATTGGCTTGGTAAGCTCAATTAATTTTTCCAATCTTAAACAAGATACAAATTAGTTAGTTATAGAACTCTAAATGTGCTTCTCATTTGGTAGGGAATTCAAGGTGGGTTGATGCCATGAAGTGGTCAGGTCAGACAACATTTAAGGAGTCTCCTACAACTTCATTTTTGGTTGATAGTGAAGAAGCAGGAATTCTGAAAAGCCATGGACCTTTGGCCTTCCTTAAGGTTTGTGTTTAAGGATGTATTCATGAGCATAAGAGGCTATTGATCTACACAGTACAGACTACAGACACTTCAAATTAAATGTGTGTCTGGTGTTTGACATATGTGTGTCTGGTGTATGTGTGTGTGTCGATTGGTGCTTTGTAGCTATTGATTCGCTTGTATTTAACTATATATTTTTTTTTTTGGAATAATAGGTGAAAGAGGCTGGTCACATGGTTCCTATGGATCAACCAAAAGTTGCACTTCAGATGTTACAAGATTGGATGCAAGGGAAACTGCACTCAGCACAAAACCAAAATCACTTTCTTGTTGTATAA
Protein sequence

>MS.gene43853.t1

MASSLRFLKVCLSFKMLLHFLFFISPSFSFLQLHPKNNDILLSSTASPSTLIRGLNLFPKSSINIPENDPHVLHGNIVEKKFTFPGFDDSGYSVEELGHHAGYYSLPHSKAARMFYFFFESRNSKDDPVVIWLTGGPGCGSEIALFYENGPFQFSKDKNLSLVWNEYGWDKASNIIFVDQPIGSGFSYTTDVHSDIRRDEDSIGNDLYDFLQAFFKEHPQFTKNDFYITGESYAGHYIPAFASRVHQGNKANEGIHINLKGFAIGNGLTNPEIQYKAYPDFALGNGLINKDEYERINKLIPPCLKAAEKCGTEGGQACGTALTTCMKIFYQITNITGNTNYYDIRKKCEGAFGDCQDFSDMETFLNMKTVKEALGVGDLIFDSCSFLVHAALTEDWMKNLEVGIPALLEDGIKLLVYAGEKDLICNWLGNSRWVDAMKWSGQTTFKESPTTSFLVDSEEAGILKSHGPLAFLKVKEAGHMVPMDQPKVALQMLQDWMQGKLHSAQNQNHFLVV