AlfalfaGEDB | MS.gene43896

M. sativa cultivar XinJiangDaYe / MS.gene43896

KEGG: -
GO: GO:0005575 GO:0016020 GO:0016021 GO:0031224 GO:0110165
PFAM: PF00892.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43896.t1	XP_003613285.1	83.2	346	22	4	1	315	1	341	1.90E-142	515.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43896.t1	Q9FL08	39.9	338	168	5	10	314	22	357	7.0e-53	209.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43896.t1	G7K2R8	83.2	346	22	4	1	315	1	341	1.4e-142	515.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051648	MS.gene43896	0.828015	1.14E-54	-1.69E-46
MS.gene052707	MS.gene43896	0.834927	2.26E-56	-1.69E-46
MS.gene053957	MS.gene43896	0.829266	5.67E-55	-1.69E-46
MS.gene053958	MS.gene43896	0.819765	9.78E-53	-1.69E-46
MS.gene053961	MS.gene43896	0.803305	3.71E-49	-1.69E-46
MS.gene054585	MS.gene43896	0.802458	5.56E-49	-1.69E-46
MS.gene055251	MS.gene43896	0.867275	1.54E-65	-1.69E-46
MS.gene058015	MS.gene43896	0.84266	2.26E-58	-1.69E-46
MS.gene060076	MS.gene43896	0.841588	4.34E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43896.t1	MTR_5g034910	83.237	346	22	4	1	315	1	341	0.0	553
MS.gene43896.t1	MTR_5g034930	68.000	350	80	4	1	319	1	349	2.75e-161	454
MS.gene43896.t1	MTR_5g034980	64.000	325	87	2	5	299	5	329	2.90e-143	408
MS.gene43896.t1	MTR_5g034970	62.751	349	86	4	1	318	1	336	3.88e-130	374
MS.gene43896.t1	MTR_5g034980	58.846	260	73	3	5	234	5	260	1.49e-97	290
MS.gene43896.t1	MTR_5g034990	39.818	329	163	5	19	315	26	351	2.43e-69	220
MS.gene43896.t1	MTR_4g106720	40.882	340	165	6	10	314	14	352	3.21e-66	212
MS.gene43896.t1	MTR_0103s0090	38.841	345	169	7	12	319	16	355	3.42e-64	207
MS.gene43896.t1	MTR_0103s0090	43.396	265	138	4	62	319	5	264	1.29e-62	200
MS.gene43896.t1	MTR_1g014510	36.812	345	178	7	12	317	16	359	4.56e-62	204

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43896.t1	AT5G40240	40.058	342	170	6	10	318	22	361	1.12e-69	221
MS.gene43896.t1	AT5G40240	40.058	342	170	6	10	318	22	361	1.12e-69	221
MS.gene43896.t1	AT5G40230	40.115	349	158	6	12	319	25	363	2.60e-69	220
MS.gene43896.t1	AT5G40240	40.058	342	170	6	10	318	36	375	3.18e-69	220
MS.gene43896.t1	AT3G28050	40.947	359	160	11	8	319	13	366	4.97e-68	217
MS.gene43896.t1	AT5G40210	40.580	345	149	10	4	312	10	334	6.74e-63	203
MS.gene43896.t1	AT3G28080	38.889	270	145	4	61	319	8	268	2.43e-59	191
MS.gene43896.t1	AT3G28080	38.889	270	145	4	61	319	8	268	2.43e-59	191
MS.gene43896.t1	AT3G28080	38.889	270	145	4	61	319	8	268	2.43e-59	191
MS.gene43896.t1	AT3G28080	38.889	270	145	4	61	319	8	268	2.43e-59	191

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Find 68 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGTTGAAGAAGATGG+GGG	0.728629	5.2:+25266048	None:intergenic
AACAAAGGTGTTGAAGAAGA+TGG	0.503041	5.2:+25266045	None:intergenic
AACAAGCATTTGTTGCAGCA+TGG	0.633651	5.2:-25268810	MS.gene43896:CDS
AAGCATAGCAGATGCTAGTG+TGG	0.579129	5.2:+25269935	None:intergenic
AAGCATTTGTTGCAGCATGG+TGG	0.684295	5.2:-25268807	MS.gene43896:CDS
AATACTCATTCCATCATTGG+TGG	0.565236	5.2:+25270319	None:intergenic
AATATAGATATTGGAGGAAG+TGG	0.416383	5.2:-25269191	MS.gene43896:CDS
AATGGTCATTGCACTTGGCA+TGG	0.561423	5.2:-25267946	MS.gene43896:CDS
AATTGTAGCTCTCATTGCAG+AGG	0.661606	5.2:-25268771	MS.gene43896:CDS
ACAAAGGTGTTGAAGAAGAT+GGG	0.514041	5.2:+25266046	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCATCGATCGTAAGAA+AGG	+	chr5.2:25269944-25269963	None:intergenic	30.0%
AAAATTGAGGATGAAATTGG+AGG	+	chr5.2:25266215-25266234	None:intergenic	30.0%
AAAGGAAACATAGAGCAAAA+AGG	+	chr5.2:25266154-25266173	None:intergenic	30.0%
AAATAAGTGATGTGTCATGT+GGG	-	chr5.2:25269239-25269258	MS.gene43896:CDS	30.0%
AAATCATCGATCGTAAGAAA+GGG	+	chr5.2:25269943-25269962	None:intergenic	30.0%
AAGGAACAGACAACTATATA+AGG	-	chr5.2:25268914-25268933	MS.gene43896:intron	30.0%
AATATAGATATTGGAGGAAG+TGG	-	chr5.2:25267233-25267252	MS.gene43896:intron	30.0%
ACCTTTCAGTTAAATCAGAT+TGG	-	chr5.2:25267261-25267280	MS.gene43896:intron	30.0%
AGCTAATTCTAACCATGATA+GGG	-	chr5.2:25269898-25269917	MS.gene43896:CDS	30.0%
CATAACTGCATAAAATCCAA+TGG	+	chr5.2:25268711-25268730	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	25266020	25270426	25266020	ID=MS.gene43896
chr5.2	mRNA	25266020	25270426	25266020	ID=MS.gene43896.t1;Parent=MS.gene43896
chr5.2	exon	25270324	25270426	25270324	ID=MS.gene43896.t1.exon1;Parent=MS.gene43896.t1
chr5.2	CDS	25270324	25270426	25270324	ID=cds.MS.gene43896.t1;Parent=MS.gene43896.t1
chr5.2	exon	25270105	25270156	25270105	ID=MS.gene43896.t1.exon2;Parent=MS.gene43896.t1
chr5.2	CDS	25270105	25270156	25270105	ID=cds.MS.gene43896.t1;Parent=MS.gene43896.t1
chr5.2	exon	25269891	25270004	25269891	ID=MS.gene43896.t1.exon3;Parent=MS.gene43896.t1
chr5.2	CDS	25269891	25270004	25269891	ID=cds.MS.gene43896.t1;Parent=MS.gene43896.t1
chr5.2	exon	25269100	25269340	25269100	ID=MS.gene43896.t1.exon4;Parent=MS.gene43896.t1
chr5.2	CDS	25269100	25269340	25269100	ID=cds.MS.gene43896.t1;Parent=MS.gene43896.t1
chr5.2	exon	25268712	25268870	25268712	ID=MS.gene43896.t1.exon5;Parent=MS.gene43896.t1
chr5.2	CDS	25268712	25268870	25268712	ID=cds.MS.gene43896.t1;Parent=MS.gene43896.t1
chr5.2	exon	25267909	25268060	25267909	ID=MS.gene43896.t1.exon6;Parent=MS.gene43896.t1
chr5.2	CDS	25267909	25268060	25267909	ID=cds.MS.gene43896.t1;Parent=MS.gene43896.t1
chr5.2	exon	25266020	25266158	25266020	ID=MS.gene43896.t1.exon7;Parent=MS.gene43896.t1
chr5.2	CDS	25266020	25266158	25266020	ID=cds.MS.gene43896.t1;Parent=MS.gene43896.t1

Gene Sequence

>MS.gene43896

ATGGTGATCGAAGGAGCAAGTGTAACAGCAACAATGGTTGCAGTTCAATTCCTAGAAGTGGGTGGTAACACTCTGATCAAATCAGCCACCAATGATGGAATGAGTATTTTTGTTTTCACTTTTTACTCAAACCTTTTTGCTCTATGTTTCCTTTTACCATGCACCTTTTTTTACCACAGAAAAAGATCTCCTCCTCCAATTTCATCCTCAATTTTATGTAGAATTTTTCTTCTTAGTTGCCTCAGGTATGAACAAATTTTATGTAATCAGCTGTTATGTTAGTATTTTCTCCTTCAAATCCTCCGGCTCTATCGTTGTCAAAGTAAATATTTTTGTATGGATATGAATTTAGTTGTATAAAAGGAAATTTATGTGAAAATTTGGAATGTTTGATTGATCTTGAGCTACCTGTGGTTGTGCAGTACTGCAGTGCAGATTTTAACGAATATTGGAATTGAATGTAGCTCTCCCACACTAGCATCTGCTATGCTTGACCTTCTCCCTGCTTTTACCTTCATACTTGCTTTAATTTCAAGGTTTGACTTATTTTATTTATCTTCTATTTACATGTAATTTACGAGTTGTGAAATTTTGAAGTTAAACCCAAGTCATAGATGTTAGTGGAAGGTCTAATCATATCCGATGTGGCAATTGTATTTGGTAAAAAATTTAATGTCACTCGGATGAAAAAGAAAATTGTGTTCAATGTGAAGGACATTCAATAAAAGTTAGATGTGTAAATTATTTAACTTCAATTAATAAATATTATTATGTATATGGAAATAAAAGCATAAATAATAAATGAAAAAAATTATTTTATATATTTTTAGTCCCTGAAAAATTGATGATTTTGCTTTTATACCCCTTTTTGAAAAGGAATCTTTGTATACAAATTTTAAAATATAGCATTTTTTGTTTCAAATATATGCCATTTGTAGTTCTACTGGAAAATATCAAAGAGTGACTTAAAAATGATATATTTCAATCATTTTTTGGTCAAGTACAAACATAATTTAATTACCCTTCTTTAATCCTTGCAAAAAAAACAGAAAAATAATATGGCATGAACACAATGTGCACTTTCAGGATGGAAAATCTAAATCTGAAACACCATAGCAGCCAAGCTAAAATAATTGGCACAGTGGTCTCCATTGCAGGGGCATTAACTGTGACATTATATAAAGGGATACCATTGATTAGTAACGCCTTTCAAAATATAGATATTGGAGGAAGTGGAATTCACCTTTCAGTTAAATCAGATTGGATAGTTGGTGCTTTTCTTCTTGCAACTGCTAGCTTTTGCCTTTCTGTTTTGTATATTGTCCAGGTAAATAAATCTTTTCGAATATTGCGCAACAAAGATTTTAAATCGTAGTTGCGGTTGGGAGTTAGATATAACTATATGTAAACATGGTTGATGCAGATTTTTGTGTGAACCAGGTATCCACCACGTGCAACTGCAGAGAGATTGATATTTTTAAAACGGCATACATTGCACTTACCTTGCACTAAATTGGGAATTTATTTAATTTTTTTTTTTCTACATATATATACAGACTTGGATTATAAGGGATTATCCTGAAGAGCTAGTGGTAACAAGCATTTGTTGCAGCATGGTGGTAATTCTATCTGCAATTGTAGCTCTCATTGCAGAGGGAAATTCAAAAGTTTGGATTCTCAGACCTGATAGGGAGTTGGTAGCTGTGTGTTATTCAGTAAGTACAAACTTTATTGTTTTTAAGAAAATTAAGAACATATTAAAATAAAATAAATTTAATTTGTATGCAATGTCATTGAAAGGTCAATGGTTCAGGTCGTGGAATCAGCCTCTTGTATAAAAAATATTGTAAGATAGATTGCGTATAATACACAAAATGATAGGACCCTTTCCCAAACTCTATGTGTGAGAGCTTTAGCGCACCATGTTGCCCTTTTTCTATGCAATGTCATTAATGGTTTTATACGGACCTCTAATCATATCTTATCATGTTGATATTTATGAAGATATATGAGAATATAATGAACATATGTAATTTGATTTGATGCATGTATTAAATAGTTGTACATTGTCGTTGCATAGATATTAATCTCTTAAGAATAAAGTGTTTTTCTTTTTGTTTTTAACCATGTTATTGATGTAAAATATGAACCTGTTAATCTTTGTTAGAGAATTTGTAAAACCAGCTTTTAGCAGGAGCTCTTTTTACAACAACATTTTTTTTTCATGCACAATATTTGAACCTAGACCTATATGTGAATAAAGGCATCACAACTTATTTTTTGACAAATGCATCACAACTTTAAAATCGGTATTTATGAATTATAATTTAACCAATGTGGAGACTTTGTGGTTGTTTCATTTATAGGCAATTTGTGTGGTATCAATGAGGAGTGTTGTATACACATGGGCATTCCGTAAGAAAGGACCAATATATGTAGCTATGTTCAACCCATTAGGAATGGTCATTGCACTTGGCATGGGTGTAATATTTTTGGGAGACAGTCTTTATCTTGGAAGGTAAATAAATACATTTAATTTAAGAACAACCAATTTGTTTTTTTTTTTTTTAAGGAAGAACAACCAATTTGTTAGAAATAATCTAAATGATGTATTAATTCAATACAAGCATTTTCATTTTAAAATTTGTTTTACTTATTGTTGCAGCATGATTGGAGCTGCTATAATAGCCATTGGATTTTATGCAGTTATGTGGGCACAAGCTCAAGAGGAAAACACAACATGTGAAAATAAATTTCCCCCTCTGTTGTCAACCAAAATAGGTGCCTAGGCGACTTTGAATTTGGAAGAGCATCTCCAATGGGGGGTCCTTACTTAACAAGGACAACTCCCGTTAAGGACCCTCCATTGGAGGAAGAAAAATTGAGTCCCTGTTAAGGAACAGACAACTATATAAGGACCTTCTCTCTCCTGGGTAACTAACGGGTCCCACGTTTAAAAAAATAATAAAATGTGTACTACTTGATCCCACTTGCATAAAGAAGTAAAAAAAATATGTACTATTTGGTTCCACTTGCATAAAGAAGTATAAAATGTGTACTACTTGGTCCCACTTGTAAAAATGAGTAATAGATAAATTATTTTTGTTTAATATGTAAAGATAATGAGACATATTTAAGTACTTTTCATTGAAGTCTTTATTAGTGTATTGACATTGGAGTCATTGAGTCCTTAATATGTACTTTTATTAAAAAAATTATAAATAAGTGATGTGTCATGTGGGGTCTATTTAAGGAGTCCTTGTTAGAGAACTACAGTGCGGATGCTCTAAGGTGGTAGGGTATACTTCTCATTGATAAAATTTATGAGTTGTGCCAAAAGTGTCGATAATAGAAGCCAGTGTAATAATTTTTTTTTTTTTTTATGCATGGTAGTATAATTTTATTAACAACCAATAAGAAGTGTGTACATTAATGGATTACTCAATAACAACTTTTAATTTGATAGTGAGACCAATACAGTTTAATATTTAATTATTTATAATGGATCTAAAAATATATCCTAGTTTTTTAGGAGTACTTAAGTAATATGTACCTTTTTAATCAATCAAAATATCTATTTAGTCTTATTAAAAAGTCAAAACTAAAGGTAGGATTGGATATTATATGTAAATATTTTTGGAGGAAAATTGTCACATTTGTTTTCCCTATTTGGAAGCACAATTAGGTGTCATTTGCTCTTTATTTACTTTTTATTGAACTTCGAATCATCAAGACCTTTTTTTTTATAATCAAACAGATAAGACAAGATAATTTTTTTTTTTTTTTTAAGAAAATGCAAGATAATTTTTAACTACAGAATTTGGATTAAATGAAATATTATAAAAGCTAAGTTTTGACATGACATCTAATTAAAATCTAGCTAATTCTAACCATGATAGGGACATGTGCACTCACACACCCCCTTTCTTACGATCGATGATTTTGTGCAGATTTGATTGTTGTGTTTGAGATTTATTTGAAAACATAATTGTTGTATATACATTGCATAATTTGAGTGAAAACCAATCACCGATTTTGTGTATTAGGAAGAATAAGTAATTTTGAATTGGTTAGTTGTAGATTTAAAATCTATTTTGAATAAAGCAGTCTATTCATAGTTATGTTGTGGTTCAAGGTTATTCATAAATTTTGATTTCTATCTTGCATGTTCATGAATCAAGAAAACTTCAAATATTTTTTATTCTTCACAAAATTATTGGATTATGGGAATTGCAAGATTTTGCCTTGTACCTACTTTTTTGGTACAGCATGATTGGAGCTGCTATCATAGTCATTGGATTTTATGTTGTGATGTGGGCACAAGCTCAAGAGGAGCACACAAGTGAAAATAATTTTCCCCCATCTTCTTCAACACCTTTGTTGTCAACCAAAAACATGGACCACTAG

Protein sequence

>MS.gene43896.t1

MVIEGASVTATMVAVQFLEVGGNTLIKSATNDGMTVMLVFSPSNPPALSLSNTAVQILTNIGIECSSPTLASAMLDLLPAFTFILALISRMENLNLKHHSSQAKIIGTVVSIAGALTVTLYKGIPLISNAFQNIDIGGSGIHLSVKSDWIVGAFLLATASFCLSVLYIVQTWIIRDYPEELVVTSICCSMVVILSAIVALIAEGNSKVWILRPDRELVAVCYSAICVVSMRSVVYTWAFRKKGPIYVAMFNPLGMVIALGMGVIFLGDSLYLGSMIGAAIIVIGFYVVMWAQAQEEHTSENNFPPSSSTPLLSTKNMDH