Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43961.t1 | XP_003590975.1 | 90.7 | 580 | 18 | 1 | 1 | 580 | 88 | 631 | 3.70E-285 | 990.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43961.t1 | Q86YJ7 | 31.7 | 227 | 145 | 4 | 1 | 223 | 68 | 288 | 1.6e-26 | 122.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43961.t1 | G7I6T1 | 90.7 | 580 | 18 | 1 | 1 | 580 | 88 | 631 | 2.7e-285 | 990.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene43961 | 0.830533 | 2.78E-55 | -1.69E-46 |
| MS.gene051850 | MS.gene43961 | 0.804825 | 1.79E-49 | -1.69E-46 |
| MS.gene051885 | MS.gene43961 | 0.831283 | 1.82E-55 | -1.69E-46 |
| MS.gene053143 | MS.gene43961 | 0.816393 | 5.66E-52 | -1.69E-46 |
| MS.gene054585 | MS.gene43961 | 0.812693 | 3.73E-51 | -1.69E-46 |
| MS.gene058720 | MS.gene43961 | 0.814616 | 1.41E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene43961 | 0.815776 | 7.77E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43961.t1 | MTR_1g080310 | 91.034 | 580 | 16 | 1 | 1 | 580 | 88 | 631 | 0.0 | 1080 |
| MS.gene43961.t1 | MTR_7g115580 | 69.431 | 615 | 107 | 7 | 1 | 578 | 114 | 684 | 0.0 | 796 |
| MS.gene43961.t1 | MTR_1g046580 | 50.600 | 583 | 202 | 14 | 1 | 540 | 90 | 629 | 3.05e-179 | 521 |
| MS.gene43961.t1 | MTR_2g023450 | 41.093 | 567 | 238 | 10 | 2 | 558 | 102 | 582 | 8.20e-129 | 390 |
| MS.gene43961.t1 | MTR_1g046930 | 40.630 | 571 | 232 | 11 | 1 | 560 | 90 | 564 | 1.17e-123 | 376 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43961.t1 | AT3G04470 | 61.962 | 581 | 116 | 13 | 1 | 542 | 88 | 602 | 0.0 | 669 |
| MS.gene43961.t1 | AT1G04780 | 50.084 | 597 | 195 | 17 | 1 | 540 | 92 | 642 | 0.0 | 529 |
| MS.gene43961.t1 | AT3G24210 | 50.000 | 554 | 205 | 12 | 1 | 538 | 90 | 587 | 7.88e-166 | 486 |
| MS.gene43961.t1 | AT1G62050 | 54.618 | 249 | 104 | 3 | 2 | 248 | 100 | 341 | 1.55e-82 | 271 |
| MS.gene43961.t1 | AT1G62050 | 39.303 | 201 | 61 | 4 | 354 | 538 | 444 | 599 | 1.37e-30 | 127 |
| MS.gene43961.t1 | AT1G11740 | 56.250 | 224 | 91 | 2 | 2 | 225 | 99 | 315 | 1.18e-76 | 256 |
| MS.gene43961.t1 | AT1G11740 | 38.916 | 203 | 65 | 4 | 354 | 538 | 365 | 526 | 7.14e-31 | 128 |
Find 156 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGATACTTACCGTATT+TGG | 0.114269 | 1.3:+56790381 | MS.gene43961:CDS |
| TTATTCCTTCAGACTATAAA+TGG | 0.144343 | 1.3:+56793523 | MS.gene43961:CDS |
| CAGGAGAAGACGGAGGTTAT+TGG | 0.254926 | 1.3:+56790722 | MS.gene43961:CDS |
| AGAATTTGAGTTACCTTAAC+AGG | 0.258053 | 1.3:-56791358 | None:intergenic |
| TTCCTATAGTCCCTACTATA+AGG | 0.271870 | 1.3:+56793283 | MS.gene43961:CDS |
| CTCTAGCCCTGTCAGCTTCC+AGG | 0.283726 | 1.3:+56793368 | MS.gene43961:CDS |
| AGGAGAAGACGGAGGTTATT+GGG | 0.311347 | 1.3:+56790723 | MS.gene43961:CDS |
| GGAGCAATTCTACCTATAAA+AGG | 0.314811 | 1.3:-56790359 | None:intergenic |
| TCAAGGAACCTTTCCTGTTA+AGG | 0.317238 | 1.3:+56791345 | MS.gene43961:CDS |
| TTTGATTGCTCTTGCTCATA+AGG | 0.321958 | 1.3:+56790544 | MS.gene43961:CDS |
| AACGCCGTATGAAGGCAAAA+AGG | 0.341141 | 1.3:+56793565 | MS.gene43961:CDS |
| AGGAGATTGCCACGTGTTAT+AGG | 0.351839 | 1.3:+56790272 | MS.gene43961:CDS |
| AATCAGAAGGGTCGGCATCC+TGG | 0.360234 | 1.3:+56793406 | MS.gene43961:CDS |
| TATGATAATTGTGAAGTTAA+TGG | 0.361275 | 1.3:+56790986 | MS.gene43961:CDS |
| TTCATTCGCAATCTCACTTT+CGG | 0.364615 | 1.3:-56790612 | None:intergenic |
| GAATAACAGAACTCTCAAAA+TGG | 0.368703 | 1.3:-56790337 | None:intergenic |
| TGATCGCTCAATCTCTGGTT+TGG | 0.373736 | 1.3:-56791052 | None:intergenic |
| TGCCGACCCTTCTGATTCCT+TGG | 0.377043 | 1.3:-56793400 | None:intergenic |
| TGATCCTCCTTCGGAAAATC+AGG | 0.378303 | 1.3:-56791088 | None:intergenic |
| GTGAAATCGAGACGGGTTCC+TGG | 0.381401 | 1.3:+56790791 | MS.gene43961:CDS |
| GAAGGAAATTACGAATGCTT+TGG | 0.383221 | 1.3:+56790568 | MS.gene43961:CDS |
| AGGAAGAGATGGAGTGCATC+AGG | 0.389031 | 1.3:+56793626 | MS.gene43961:CDS |
| CATTATTTCTCAGGCCTCTC+TGG | 0.389887 | 1.3:+56793234 | MS.gene43961:CDS |
| AGCTTGTTCCGAATCTGAAT+TGG | 0.392378 | 1.3:+56790693 | MS.gene43961:CDS |
| GTAACAATTACCCTTATAGT+AGG | 0.393857 | 1.3:-56793294 | None:intergenic |
| CGTGCTGATATGACTTTAGC+TGG | 0.396670 | 1.3:+56790422 | MS.gene43961:CDS |
| GGTCGGCATCCTGGGTTTCA+TGG | 0.404747 | 1.3:+56793415 | MS.gene43961:CDS |
| GTTTGCTAAGATATCAAGTA+AGG | 0.405545 | 1.3:-56791272 | None:intergenic |
| TTTGCTGATCGCTCAATCTC+TGG | 0.408381 | 1.3:-56791057 | None:intergenic |
| CAAACAAGGTGAAGGCTATT+CGG | 0.411901 | 1.3:+56791290 | MS.gene43961:CDS |
| AAAGAGAAGAAGGGTTGGTT+TGG | 0.413285 | 1.3:+56791016 | MS.gene43961:CDS |
| TATTCACAGTCACAGATATA+AGG | 0.414495 | 1.3:+56793482 | MS.gene43961:CDS |
| AGAAGAAGGGTTGGTTTGGA+TGG | 0.419549 | 1.3:+56791020 | MS.gene43961:CDS |
| TGGCACCACGTTTCCAAATA+CGG | 0.419702 | 1.3:-56790394 | None:intergenic |
| ATGGTACGGCATTATTTCTC+AGG | 0.421480 | 1.3:+56793225 | MS.gene43961:CDS |
| GTGTTATAGGTTCCGCTTCG+CGG | 0.422474 | 1.3:+56790285 | MS.gene43961:CDS |
| TGGCAATCTCCTGCACCATT+TGG | 0.423961 | 1.3:-56790261 | None:intergenic |
| ATTTCCCCGTGATCCTCCTT+CGG | 0.429547 | 1.3:-56791097 | None:intergenic |
| TCTCGGTGAGGGTTATGCTT+CGG | 0.429816 | 1.3:+56790490 | MS.gene43961:CDS |
| AGACGGAGGTTATTGGGGAT+TGG | 0.431077 | 1.3:+56790729 | MS.gene43961:CDS |
| GACGAGGAACCTGGAGCAGC+AGG | 0.432854 | 1.3:+56790935 | MS.gene43961:CDS |
| AATCCTCCTCCTGCTGCTCC+AGG | 0.433201 | 1.3:-56790944 | None:intergenic |
| AACCTCTTGCTTGGTCCAAA+TGG | 0.435745 | 1.3:+56790246 | MS.gene43961:CDS |
| TTATGATATGCTCAATGTTA+TGG | 0.436490 | 1.3:+56790763 | MS.gene43961:CDS |
| CAAACAAGTCAGATGCATAT+AGG | 0.436632 | 1.3:+56793053 | MS.gene43961:CDS |
| GGCTTTGAGGATGGGGAACT+CGG | 0.436643 | 1.3:+56790898 | MS.gene43961:CDS |
| ATGACTTTAGCTGGTTTCGA+TGG | 0.437930 | 1.3:+56790431 | MS.gene43961:CDS |
| CATCAGGGGAGTGATGATTT+CGG | 0.442245 | 1.3:+56793642 | MS.gene43961:CDS |
| TCCTATAGTCCCTACTATAA+GGG | 0.445640 | 1.3:+56793284 | MS.gene43961:CDS |
| AGTCATATCAGCACGAAGAT+TGG | 0.446768 | 1.3:-56790414 | None:intergenic |
| TGCTGAGGAGAGAGTGCAAT+TGG | 0.447314 | 1.3:+56790871 | MS.gene43961:CDS |
| ATCAGAAGGGTCGGCATCCT+GGG | 0.454380 | 1.3:+56793407 | MS.gene43961:CDS |
| GTCTTCAAAACGAACAAGGC+TGG | 0.459169 | 1.3:+56790156 | MS.gene43961:CDS |
| GGAGAGAGTGCAATTGGATT+CGG | 0.459225 | 1.3:+56790877 | MS.gene43961:CDS |
| TTATGTCCGCCGGCGCCGAT+TGG | 0.460473 | 1.3:+56790132 | None:intergenic |
| TGCAATTGGATTCGGCTTTG+AGG | 0.460887 | 1.3:+56790885 | MS.gene43961:CDS |
| GTTTGTCAAGACGAGGAACC+TGG | 0.461453 | 1.3:+56790926 | MS.gene43961:CDS |
| GATATTATCAACCTCTTGCT+TGG | 0.461971 | 1.3:+56790237 | MS.gene43961:CDS |
| TGGTTATGCTATTGCTGTGC+AGG | 0.462763 | 1.3:+56793254 | MS.gene43961:CDS |
| TGGTGTGGTTAAAGAGAAGA+AGG | 0.467370 | 1.3:+56791006 | MS.gene43961:CDS |
| TGGGTTTCGAATTCAGCGTT+CGG | 0.472090 | 1.3:+56790451 | MS.gene43961:CDS |
| TGGATTCGGCTTTGAGGATG+GGG | 0.473081 | 1.3:+56790891 | MS.gene43961:CDS |
| ACCCTTATAGTAGGGACTAT+AGG | 0.475970 | 1.3:-56793285 | None:intergenic |
| TGACGCCTCCAATTCAGATT+CGG | 0.479238 | 1.3:-56790701 | None:intergenic |
| TTGGATTCGGCTTTGAGGAT+GGG | 0.482902 | 1.3:+56790890 | MS.gene43961:CDS |
| TTAGCATCCTGGAAGCTGAC+AGG | 0.487103 | 1.3:-56793375 | None:intergenic |
| GCAGCAGGAGGAGGATTTGA+TGG | 0.487668 | 1.3:+56790950 | MS.gene43961:CDS |
| ATTGGATTCGGCTTTGAGGA+TGG | 0.490095 | 1.3:+56790889 | MS.gene43961:CDS |
| GAATCTGAATTGGAGGCGTC+AGG | 0.490960 | 1.3:+56790703 | MS.gene43961:CDS |
| TATTCCTTCAGACTATAAAT+GGG | 0.499614 | 1.3:+56793524 | MS.gene43961:CDS |
| ACGAATGCTTTGGAAGGGGC+TGG | 0.501439 | 1.3:+56790578 | MS.gene43961:CDS |
| ATGTTGTGTCAGTATTTGTA+TGG | 0.501988 | 1.3:+56793206 | MS.gene43961:intron |
| TTGTTCCGAATCTGAATTGG+AGG | 0.505341 | 1.3:+56790696 | MS.gene43961:CDS |
| TTGCTTGGTCCAAATGGTGC+AGG | 0.506074 | 1.3:+56790252 | MS.gene43961:CDS |
| GAGGGTTATGCTTCGGAGGA+TGG | 0.510813 | 1.3:+56790497 | MS.gene43961:CDS |
| GAACCTGGAGCAGCAGGAGG+AGG | 0.516961 | 1.3:+56790941 | MS.gene43961:CDS |
| GCCGAGATTCTTATGTCCGC+CGG | 0.518417 | 1.3:+56790122 | None:intergenic |
| TGACTTTAGCTGGTTTCGAT+GGG | 0.523491 | 1.3:+56790432 | MS.gene43961:CDS |
| TGAGAGGAAACGCCGTATGA+AGG | 0.525390 | 1.3:+56793557 | MS.gene43961:CDS |
| TTGAGGATGGGGAACTCGGA+TGG | 0.526848 | 1.3:+56790902 | MS.gene43961:CDS |
| GGAAGAGATGGAGTGCATCA+GGG | 0.528462 | 1.3:+56793627 | MS.gene43961:CDS |
| TTGAAGACTCCAATCGGCGC+CGG | 0.528698 | 1.3:-56790141 | None:intergenic |
| TCAGACGAATATGTATCGTC+CGG | 0.529008 | 1.3:+56790649 | MS.gene43961:CDS |
| AAGAAACAGACTGTTGCTAA+AGG | 0.529478 | 1.3:+56793606 | MS.gene43961:CDS |
| CTGGAGTTCTCTTCAAGAAG+CGG | 0.530772 | 1.3:+56790175 | MS.gene43961:CDS |
| GGAGGTTATTGGGGATTGGA+AGG | 0.536587 | 1.3:+56790733 | MS.gene43961:CDS |
| ATTCCTTGGATTTAGCATCC+TGG | 0.540994 | 1.3:-56793386 | None:intergenic |
| TTGAGTTACCTTAACAGGAA+AGG | 0.542185 | 1.3:-56791353 | None:intergenic |
| CAGACGAATATGTATCGTCC+GGG | 0.542700 | 1.3:+56790650 | MS.gene43961:CDS |
| TTCGCAATCTCACTTTCGGT+CGG | 0.544449 | 1.3:-56790608 | None:intergenic |
| TGCTCTTGCTCATAAGGAGA+AGG | 0.545465 | 1.3:+56790550 | MS.gene43961:CDS |
| GGGGAAATGAAATCAAAGAA+AGG | 0.551671 | 1.3:+56791112 | MS.gene43961:CDS |
| TAGTCTGAAGGAATAATGAA+AGG | 0.552472 | 1.3:-56793516 | None:intergenic |
| TCCTGGGTTTCATGGATGAA+AGG | 0.554595 | 1.3:+56793423 | MS.gene43961:CDS |
| TGGTTAAAGAGAAGAAGGGT+TGG | 0.555124 | 1.3:+56791011 | MS.gene43961:CDS |
| TCTTGTGTCAACCACAAGAC+AGG | 0.557144 | 1.3:-56791220 | None:intergenic |
| AGAAGCTCATCTGTCTTCAA+AGG | 0.559793 | 1.3:-56791247 | None:intergenic |
| ATTTGAGGAGCTTCAGACAC+CGG | 0.561298 | 1.3:+56793326 | MS.gene43961:CDS |
| AAATTACGAATGCTTTGGAA+GGG | 0.561569 | 1.3:+56790573 | MS.gene43961:CDS |
| ACTGTTGCTAAAGGAAGAGA+TGG | 0.562544 | 1.3:+56793615 | MS.gene43961:CDS |
| TAACAATTACCCTTATAGTA+GGG | 0.564302 | 1.3:-56793293 | None:intergenic |
| GAAGAGATGGAGTGCATCAG+GGG | 0.566509 | 1.3:+56793628 | MS.gene43961:CDS |
| AGTCTGAAGGAATAATGAAA+GGG | 0.566703 | 1.3:-56793515 | None:intergenic |
| AGTGGAGTTGAAAACTCCTC+CGG | 0.566862 | 1.3:-56793345 | None:intergenic |
| TTGGAGGCGTCAGGAGAAGA+CGG | 0.567822 | 1.3:+56790712 | MS.gene43961:CDS |
| TCCTTTCATCCATGAAACCC+AGG | 0.568104 | 1.3:-56793424 | None:intergenic |
| GAAATTACGAATGCTTTGGA+AGG | 0.571537 | 1.3:+56790572 | MS.gene43961:CDS |
| GGAGGAGGATTTGATGGTCG+CGG | 0.571617 | 1.3:+56790956 | MS.gene43961:CDS |
| ATCCAAGGAATCAGAAGGGT+CGG | 0.572870 | 1.3:+56793398 | MS.gene43961:CDS |
| CGGTGAGGGTTATGCTTCGG+AGG | 0.575807 | 1.3:+56790493 | MS.gene43961:CDS |
| AAGACTCCAATCGGCGCCGG+CGG | 0.576047 | 1.3:-56790138 | None:intergenic |
| TAGCATCCTGGAAGCTGACA+GGG | 0.578906 | 1.3:-56793374 | None:intergenic |
| TCCACCCATTTATAGTCTGA+AGG | 0.582960 | 1.3:-56793528 | None:intergenic |
| CAAATACGGTAAGTATCAGA+AGG | 0.586516 | 1.3:-56790380 | None:intergenic |
| TATTGGGGATTGGAAGGCGA+AGG | 0.587881 | 1.3:+56790739 | MS.gene43961:CDS |
| GTGTCAGTATTTGTATGGTA+CGG | 0.588861 | 1.3:+56793211 | MS.gene43961:intron |
| CACCATTTGGACCAAGCAAG+AGG | 0.590797 | 1.3:-56790248 | None:intergenic |
| GCTAAATCCAAGGAATCAGA+AGG | 0.590935 | 1.3:+56793393 | MS.gene43961:CDS |
| AATTACGAATGCTTTGGAAG+GGG | 0.591683 | 1.3:+56790574 | MS.gene43961:CDS |
| GGAGAAGACGGAGGTTATTG+GGG | 0.592501 | 1.3:+56790724 | MS.gene43961:CDS |
| TCCTTCAGACTATAAATGGG+TGG | 0.594726 | 1.3:+56793527 | MS.gene43961:CDS |
| AAGCTGACAGGGCTAGAGAG+TGG | 0.597907 | 1.3:-56793363 | None:intergenic |
| AATGAAATCAAAGAAAGGAA+AGG | 0.599864 | 1.3:+56791117 | MS.gene43961:CDS |
| GAGGAACCTGGAGCAGCAGG+AGG | 0.600260 | 1.3:+56790938 | MS.gene43961:CDS |
| CTTCCAGGATGCTAAATCCA+AGG | 0.600724 | 1.3:+56793383 | MS.gene43961:CDS |
| TCCGGGGATTGATGTTACTC+AGG | 0.601161 | 1.3:+56790667 | MS.gene43961:CDS |
| GGTGAGTGTGAAATCGAGAC+GGG | 0.602172 | 1.3:+56790784 | MS.gene43961:CDS |
| TTTGCTAAGATATCAAGTAA+GGG | 0.608599 | 1.3:-56791271 | None:intergenic |
| AATGGGTGGATGCAAATGAG+AGG | 0.613093 | 1.3:+56793541 | MS.gene43961:CDS |
| TCTTCGTCATTCAAAGCACC+AGG | 0.618610 | 1.3:-56790809 | None:intergenic |
| TGGAGTCTTCAAAACGAACA+AGG | 0.618942 | 1.3:+56790152 | MS.gene43961:CDS |
| TATCTTAGCAAACAAGGTGA+AGG | 0.619308 | 1.3:+56791282 | MS.gene43961:CDS |
| AAAATCACGAATCCGCGAAG+CGG | 0.622628 | 1.3:-56790297 | None:intergenic |
| GCCTGAGTAACATCAATCCC+CGG | 0.623504 | 1.3:-56790668 | None:intergenic |
| GGTGTGGTTAAAGAGAAGAA+GGG | 0.630158 | 1.3:+56791007 | MS.gene43961:CDS |
| TGGTGCTTTGAATGACGAAG+AGG | 0.631423 | 1.3:+56790811 | MS.gene43961:CDS |
| TGGTGAGTGTGAAATCGAGA+CGG | 0.631692 | 1.3:+56790783 | MS.gene43961:CDS |
| ACTTACCGTATTTGGAAACG+TGG | 0.650073 | 1.3:+56790389 | MS.gene43961:CDS |
| CTGACAACTAAACTTCCTCA+AGG | 0.651345 | 1.3:+56791328 | MS.gene43961:CDS |
| ACTTGATATCTTAGCAAACA+AGG | 0.654562 | 1.3:+56791276 | MS.gene43961:CDS |
| GGGGATTGATGTTACTCAGG+CGG | 0.655916 | 1.3:+56790670 | MS.gene43961:CDS |
| TTAACAGGAAAGGTTCCTTG+AGG | 0.674558 | 1.3:-56791343 | None:intergenic |
| TCATGGATGAAAGGAAGTCG+TGG | 0.678183 | 1.3:+56793432 | MS.gene43961:CDS |
| AGACGAATATGTATCGTCCG+GGG | 0.679025 | 1.3:+56790651 | MS.gene43961:CDS |
| TAATTGTGAAGTTAATGGTG+TGG | 0.681790 | 1.3:+56790991 | MS.gene43961:CDS |
| TGAGGAGCTTCAGACACCGG+AGG | 0.682501 | 1.3:+56793329 | MS.gene43961:CDS |
| GGATGGTGTTTGTCAAGACG+AGG | 0.696399 | 1.3:+56790919 | MS.gene43961:CDS |
| TGATGATGTGTTGACTGCTG+AGG | 0.705268 | 1.3:+56790856 | MS.gene43961:CDS |
| CAGCAATAGCATAACCAGAG+AGG | 0.706175 | 1.3:-56793248 | None:intergenic |
| GGTAATGTGACGCTACCGCG+TGG | 0.722580 | 1.3:+56790518 | MS.gene43961:CDS |
| CTAAATCCAAGGAATCAGAA+GGG | 0.725626 | 1.3:+56793394 | MS.gene43961:CDS |
| AGTGAGAGTGAGTTCAAACG+AGG | 0.726522 | 1.3:+56791190 | MS.gene43961:CDS |
| GAAGCGGAACCTATAACACG+TGG | 0.748077 | 1.3:-56790281 | None:intergenic |
| GAGGCGTCAGGAGAAGACGG+AGG | 0.759117 | 1.3:+56790715 | MS.gene43961:CDS |
| GAGGTGTAAGACCTGTCTTG+TGG | 0.769541 | 1.3:+56791209 | MS.gene43961:CDS |
| AGAGCAATCAAAGAACCACG+CGG | 0.841115 | 1.3:-56790533 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTTATGTAATTTATATA+TGG | - | chr1.3:56792089-56792108 | None:intergenic | 10.0% |
| !!! | ATCATTATTTAAGATATTAA+TGG | + | chr1.3:56792594-56792613 | MS.gene43961:intron | 10.0% |
| !!! | TTTCTTATTTTTCTTAATTT+TGG | - | chr1.3:56793592-56793611 | None:intergenic | 10.0% |
| !! | ACAGAAAATTGTTAAAAAAA+AGG | - | chr1.3:56791920-56791939 | None:intergenic | 15.0% |
| !! | TCTATAATGAAAAATAGAAA+AGG | - | chr1.3:56792861-56792880 | None:intergenic | 15.0% |
| !! | AATGCAAAATGAAATTACAT+TGG | + | chr1.3:56792059-56792078 | MS.gene43961:intron | 20.0% |
| !! | ATGATTGTTCTATCAATTTA+GGG | + | chr1.3:56791794-56791813 | MS.gene43961:intron | 20.0% |
| !! | CTTGTTAGGATATATAATAA+AGG | - | chr1.3:56791707-56791726 | None:intergenic | 20.0% |
| !! | TAAGAAATAAAGAACTTTCA+AGG | - | chr1.3:56792393-56792412 | None:intergenic | 20.0% |
| !! | TATGATAATTGTGAAGTTAA+TGG | + | chr1.3:56790986-56791005 | MS.gene43961:CDS | 20.0% |
| !! | TTGAAAAAGAAAAAGAAGAA+AGG | + | chr1.3:56791148-56791167 | MS.gene43961:CDS | 20.0% |
| !!! | AAATATTGATGGTTTTCTAT+GGG | + | chr1.3:56792522-56792541 | MS.gene43961:intron | 20.0% |
| !!! | AATTTCATTTTGCATTATTG+AGG | - | chr1.3:56792055-56792074 | None:intergenic | 20.0% |
| !!! | GAAAGTTCTTTATTTCTTAT+TGG | + | chr1.3:56792394-56792413 | MS.gene43961:intron | 20.0% |
| !!! | GTCACATATTTTAAATAGAA+TGG | - | chr1.3:56792560-56792579 | None:intergenic | 20.0% |
| !!! | TATCTCTAAAATGTTCAAAA+AGG | - | chr1.3:56793029-56793048 | None:intergenic | 20.0% |
| !!! | TGTGACATTTTTGTTATAAA+GGG | + | chr1.3:56791976-56791995 | MS.gene43961:intron | 20.0% |
| !!! | TGTTACTTTTACAAAATTTG+AGG | + | chr1.3:56793311-56793330 | MS.gene43961:CDS | 20.0% |
| ! | AAATAAAGAACTTTCAAGGA+GGG | - | chr1.3:56792389-56792408 | None:intergenic | 25.0% |
| ! | AATGAAATCAAAGAAAGGAA+AGG | + | chr1.3:56791117-56791136 | MS.gene43961:CDS | 25.0% |
| ! | AATTAGCACAAAGATTCAAA+GGG | - | chr1.3:56792636-56792655 | None:intergenic | 25.0% |
| ! | ATAATTAGTAGTTAAGAGTG+GGG | - | chr1.3:56791684-56791703 | None:intergenic | 25.0% |
| ! | ATCCTAACAAGATACATTAA+AGG | + | chr1.3:56791716-56791735 | MS.gene43961:intron | 25.0% |
| ! | ATCCTTTAATGTATCTTGTT+AGG | - | chr1.3:56791721-56791740 | None:intergenic | 25.0% |
| ! | CATAGAAAACCATCAATATT+TGG | - | chr1.3:56792523-56792542 | None:intergenic | 25.0% |
| ! | GATAATTAGTAGTTAAGAGT+GGG | - | chr1.3:56791685-56791704 | None:intergenic | 25.0% |
| ! | GATGATTGTTCTATCAATTT+AGG | + | chr1.3:56791793-56791812 | MS.gene43961:intron | 25.0% |
| ! | TAACAATTACCCTTATAGTA+GGG | - | chr1.3:56793296-56793315 | None:intergenic | 25.0% |
| ! | TACTACATGAGAATGAAAAT+AGG | + | chr1.3:56792302-56792321 | MS.gene43961:intron | 25.0% |
| ! | TATTCCTTCAGACTATAAAT+GGG | + | chr1.3:56793524-56793543 | MS.gene43961:CDS | 25.0% |
| ! | TTATGATATGCTCAATGTTA+TGG | + | chr1.3:56790763-56790782 | MS.gene43961:CDS | 25.0% |
| ! | TTATTCCTTCAGACTATAAA+TGG | + | chr1.3:56793523-56793542 | MS.gene43961:CDS | 25.0% |
| ! | TTTGCTAAGATATCAAGTAA+GGG | - | chr1.3:56791274-56791293 | None:intergenic | 25.0% |
| !! | AGTTCTGTTATTCCTTTTAT+AGG | + | chr1.3:56790347-56790366 | MS.gene43961:CDS | 25.0% |
| !! | ATGACATTTTGCATTATGAT+GGG | - | chr1.3:56792115-56792134 | None:intergenic | 25.0% |
| !! | ATGTCACAGTATTTTCATTA+TGG | - | chr1.3:56791964-56791983 | None:intergenic | 25.0% |
| !! | GTTCTTTATTTCTTATTGGT+TGG | + | chr1.3:56792398-56792417 | MS.gene43961:intron | 25.0% |
| !! | TAGTTCTTTTACTTGCATTA+TGG | + | chr1.3:56792976-56792995 | MS.gene43961:intron | 25.0% |
| !! | TTATTTCTTATTGGTTGGTT+GGG | + | chr1.3:56792403-56792422 | MS.gene43961:intron | 25.0% |
| !! | TTTATTTCTTATTGGTTGGT+TGG | + | chr1.3:56792402-56792421 | MS.gene43961:intron | 25.0% |
| !!! | AATATTGATGGTTTTCTATG+GGG | + | chr1.3:56792523-56792542 | MS.gene43961:intron | 25.0% |
| !!! | CAAATATTGATGGTTTTCTA+TGG | + | chr1.3:56792521-56792540 | MS.gene43961:intron | 25.0% |
| !!! | CTGTGACATTTTTGTTATAA+AGG | + | chr1.3:56791975-56791994 | MS.gene43961:intron | 25.0% |
| !!! | GTGACATTTTTGTTATAAAG+GGG | + | chr1.3:56791977-56791996 | MS.gene43961:intron | 25.0% |
| !!! | GTTCTTTATTTTACAGCAAT+AGG | + | chr1.3:56791612-56791631 | MS.gene43961:intron | 25.0% |
| !!! | TCAGATTTTAATCTACAGAA+GGG | - | chr1.3:56792750-56792769 | None:intergenic | 25.0% |
| !!! | TTCAGATTTTAATCTACAGA+AGG | - | chr1.3:56792751-56792770 | None:intergenic | 25.0% |
| AAGCGTTATTCAAATTGTAG+CGG | + | chr1.3:56792833-56792852 | MS.gene43961:intron | 30.0% | |
| AATAAAGAACTTTCAAGGAG+GGG | - | chr1.3:56792388-56792407 | None:intergenic | 30.0% | |
| ACTTGATATCTTAGCAAACA+AGG | + | chr1.3:56791276-56791295 | MS.gene43961:CDS | 30.0% | |
| AGTCTGAAGGAATAATGAAA+GGG | - | chr1.3:56793518-56793537 | None:intergenic | 30.0% | |
| ATGTTGTGTCAGTATTTGTA+TGG | + | chr1.3:56793206-56793225 | MS.gene43961:intron | 30.0% | |
| ATTCTTTCTTGCTCAAAGAA+AGG | - | chr1.3:56791532-56791551 | None:intergenic | 30.0% | |
| CAATTAGCACAAAGATTCAA+AGG | - | chr1.3:56792637-56792656 | None:intergenic | 30.0% | |
| CTTTCTCTATTGTCATAAGT+GGG | + | chr1.3:56792462-56792481 | MS.gene43961:intron | 30.0% | |
| GAAATAAAGAACTTTCAAGG+AGG | - | chr1.3:56792390-56792409 | None:intergenic | 30.0% | |
| GAATAACAGAACTCTCAAAA+TGG | - | chr1.3:56790340-56790359 | None:intergenic | 30.0% | |
| GGATAATTAGTAGTTAAGAG+TGG | - | chr1.3:56791686-56791705 | None:intergenic | 30.0% | |
| GTAACAATTACCCTTATAGT+AGG | - | chr1.3:56793297-56793316 | None:intergenic | 30.0% | |
| TAATTAGTAGTTAAGAGTGG+GGG | - | chr1.3:56791683-56791702 | None:intergenic | 30.0% | |
| TAATTGTGAAGTTAATGGTG+TGG | + | chr1.3:56790991-56791010 | MS.gene43961:CDS | 30.0% | |
| TAGTCTGAAGGAATAATGAA+AGG | - | chr1.3:56793519-56793538 | None:intergenic | 30.0% | |
| TATTCACAGTCACAGATATA+AGG | + | chr1.3:56793482-56793501 | MS.gene43961:CDS | 30.0% | |
| TCAAACTAGTCCCTAAATTA+AGG | + | chr1.3:56792164-56792183 | MS.gene43961:intron | 30.0% | |
| TCTTTCTCTATTGTCATAAG+TGG | + | chr1.3:56792461-56792480 | MS.gene43961:intron | 30.0% | |
| TGTCAAAGAAAAACCAATGT+TGG | + | chr1.3:56792216-56792235 | MS.gene43961:intron | 30.0% | |
| TTACAGCTAACTAATCTTGT+CGG | - | chr1.3:56791465-56791484 | None:intergenic | 30.0% | |
| TTCTCAAACCAAACAAACTA+AGG | + | chr1.3:56792027-56792046 | MS.gene43961:intron | 30.0% | |
| ! | AGAATTTGAGTTACCTTAAC+AGG | - | chr1.3:56791361-56791380 | None:intergenic | 30.0% |
| ! | AGTCTAGTTCCAAATATTGA+TGG | + | chr1.3:56792511-56792530 | MS.gene43961:intron | 30.0% |
| ! | ATCAATATTTGGAACTAGAC+TGG | - | chr1.3:56792512-56792531 | None:intergenic | 30.0% |
| ! | CTATCAATTTAGGGTTTCTT+TGG | + | chr1.3:56791803-56791822 | MS.gene43961:intron | 30.0% |
| ! | CTTTTACTTGCATTATGGAA+AGG | + | chr1.3:56792981-56793000 | MS.gene43961:intron | 30.0% |
| ! | GATGACATTTTGCATTATGA+TGG | - | chr1.3:56792116-56792135 | None:intergenic | 30.0% |
| ! | GTTTGCTAAGATATCAAGTA+AGG | - | chr1.3:56791275-56791294 | None:intergenic | 30.0% |
| ! | TAGGATGTATTTTCATATGC+TGG | + | chr1.3:56793072-56793091 | MS.gene43961:CDS | 30.0% |
| ! | TTTGTTATAAAGGGGAAAAG+AGG | + | chr1.3:56791985-56792004 | MS.gene43961:intron | 30.0% |
| !! | AAATTACGAATGCTTTGGAA+GGG | + | chr1.3:56790573-56790592 | MS.gene43961:CDS | 30.0% |
| !!! | AACATTGGTTTTTCTTTGAC+AGG | - | chr1.3:56792217-56792236 | None:intergenic | 30.0% |
| !!! | GATCAGAGTTTTTTGTTTCT+CGG | + | chr1.3:56790473-56790492 | MS.gene43961:CDS | 30.0% |
| AAGAAACAGACTGTTGCTAA+AGG | + | chr1.3:56793606-56793625 | MS.gene43961:CDS | 35.0% | |
| AATTAGTAGTTAAGAGTGGG+GGG | - | chr1.3:56791682-56791701 | None:intergenic | 35.0% | |
| ACTCATGCACTATCAAAGAA+AGG | - | chr1.3:56792436-56792455 | None:intergenic | 35.0% | |
| ATAAAGAACTTTCAAGGAGG+GGG | - | chr1.3:56792387-56792406 | None:intergenic | 35.0% | |
| ATGAATGCTGAGTGATCAAA+AGG | + | chr1.3:56791563-56791582 | MS.gene43961:intron | 35.0% | |
| ATGCAAAATGTCACCAACAT+TGG | - | chr1.3:56792232-56792251 | None:intergenic | 35.0% | |
| CAAACAAGTCAGATGCATAT+AGG | + | chr1.3:56793053-56793072 | MS.gene43961:CDS | 35.0% | |
| CAAATACGGTAAGTATCAGA+AGG | - | chr1.3:56790383-56790402 | None:intergenic | 35.0% | |
| CTAAATCCAAGGAATCAGAA+GGG | + | chr1.3:56793394-56793413 | MS.gene43961:CDS | 35.0% | |
| CTTCTGATACTTACCGTATT+TGG | + | chr1.3:56790381-56790400 | MS.gene43961:CDS | 35.0% | |
| GAAGGAAATTACGAATGCTT+TGG | + | chr1.3:56790568-56790587 | MS.gene43961:CDS | 35.0% | |
| GATATTATCAACCTCTTGCT+TGG | + | chr1.3:56790237-56790256 | MS.gene43961:CDS | 35.0% | |
| GATGACATACATGAATGTAG+AGG | - | chr1.3:56792195-56792214 | None:intergenic | 35.0% | |
| GCTACAATTTGAATAACGCT+TGG | - | chr1.3:56792834-56792853 | None:intergenic | 35.0% | |
| GGAGCAATTCTACCTATAAA+AGG | - | chr1.3:56790362-56790381 | None:intergenic | 35.0% | |
| GGGGAAATGAAATCAAAGAA+AGG | + | chr1.3:56791112-56791131 | MS.gene43961:CDS | 35.0% | |
| GTGTCAGTATTTGTATGGTA+CGG | + | chr1.3:56793211-56793230 | MS.gene43961:intron | 35.0% | |
| GTTCAAAAAGGATAAGACAG+CGG | - | chr1.3:56793017-56793036 | None:intergenic | 35.0% | |
| TATCTTAGCAAACAAGGTGA+AGG | + | chr1.3:56791282-56791301 | MS.gene43961:CDS | 35.0% | |
| TCATCAGATGACCAGAATAA+TGG | - | chr1.3:56791778-56791797 | None:intergenic | 35.0% | |
| TCCTATAGTCCCTACTATAA+GGG | + | chr1.3:56793284-56793303 | MS.gene43961:CDS | 35.0% | |
| TTAGTCTCAGTCATGCAAAA+TGG | + | chr1.3:56792139-56792158 | MS.gene43961:intron | 35.0% | |
| TTCAAAGGGAGAAACAAACT+AGG | - | chr1.3:56792622-56792641 | None:intergenic | 35.0% | |
| TTCATTCGCAATCTCACTTT+CGG | - | chr1.3:56790615-56790634 | None:intergenic | 35.0% | |
| TTCCTATAGTCCCTACTATA+AGG | + | chr1.3:56793283-56793302 | MS.gene43961:CDS | 35.0% | |
| TTGAGTTACCTTAACAGGAA+AGG | - | chr1.3:56791356-56791375 | None:intergenic | 35.0% | |
| TTTGATTGCTCTTGCTCATA+AGG | + | chr1.3:56790544-56790563 | MS.gene43961:CDS | 35.0% | |
| ! | AATATTTGGAACTAGACTGG+TGG | - | chr1.3:56792509-56792528 | None:intergenic | 35.0% |
| ! | GAAATTACGAATGCTTTGGA+AGG | + | chr1.3:56790572-56790591 | MS.gene43961:CDS | 35.0% |
| ! | GCGGATTCGTGATTTTTATA+TGG | + | chr1.3:56790304-56790323 | MS.gene43961:CDS | 35.0% |
| !! | AATTACGAATGCTTTGGAAG+GGG | + | chr1.3:56790574-56790593 | MS.gene43961:CDS | 35.0% |
| !! | ACATTTTACAAGAGCACGAT+AGG | - | chr1.3:56793190-56793209 | None:intergenic | 35.0% |
| !! | TGACCAGAATAATGGACATT+TGG | - | chr1.3:56791770-56791789 | None:intergenic | 35.0% |
| !! | TTGAGGAACCTTAGTTTGTT+TGG | - | chr1.3:56792038-56792057 | None:intergenic | 35.0% |
| !!! | AGTTTTTTGTTTCTCGGTGA+GGG | + | chr1.3:56790479-56790498 | MS.gene43961:CDS | 35.0% |
| !!! | TTCGTTTTGAAGACTCCAAT+CGG | - | chr1.3:56790150-56790169 | None:intergenic | 35.0% |
| AATAACGCTTGGCCAACATA+TGG | - | chr1.3:56792823-56792842 | None:intergenic | 40.0% | |
| ACCCTTATAGTAGGGACTAT+AGG | - | chr1.3:56793288-56793307 | None:intergenic | 40.0% | |
| ACTGTTGCTAAAGGAAGAGA+TGG | + | chr1.3:56793615-56793634 | MS.gene43961:CDS | 40.0% | |
| ACTTACCGTATTTGGAAACG+TGG | + | chr1.3:56790389-56790408 | MS.gene43961:CDS | 40.0% | |
| AGAAGCTCATCTGTCTTCAA+AGG | - | chr1.3:56791250-56791269 | None:intergenic | 40.0% | |
| AGAGGAGGAGCCTTAATTTA+GGG | - | chr1.3:56792177-56792196 | None:intergenic | 40.0% | |
| AGTCATATCAGCACGAAGAT+TGG | - | chr1.3:56790417-56790436 | None:intergenic | 40.0% | |
| ATTAGTAGTTAAGAGTGGGG+GGG | - | chr1.3:56791681-56791700 | None:intergenic | 40.0% | |
| ATTCCTTGGATTTAGCATCC+TGG | - | chr1.3:56793389-56793408 | None:intergenic | 40.0% | |
| CAAACAAGGTGAAGGCTATT+CGG | + | chr1.3:56791290-56791309 | MS.gene43961:CDS | 40.0% | |
| CACTCAGCATTCATCTGTTA+TGG | - | chr1.3:56791557-56791576 | None:intergenic | 40.0% | |
| CCTCCAAATGTCCATTATTC+TGG | + | chr1.3:56791764-56791783 | MS.gene43961:intron | 40.0% | |
| CTGACAACTAAACTTCCTCA+AGG | + | chr1.3:56791328-56791347 | MS.gene43961:CDS | 40.0% | |
| GACATACATGAATGTAGAGG+AGG | - | chr1.3:56792192-56792211 | None:intergenic | 40.0% | |
| GCTAAATCCAAGGAATCAGA+AGG | + | chr1.3:56793393-56793412 | MS.gene43961:CDS | 40.0% | |
| GGTGTGGTTAAAGAGAAGAA+GGG | + | chr1.3:56791007-56791026 | MS.gene43961:CDS | 40.0% | |
| TAAAGAACTTTCAAGGAGGG+GGG | - | chr1.3:56792386-56792405 | None:intergenic | 40.0% | |
| TAGAGGAGGAGCCTTAATTT+AGG | - | chr1.3:56792178-56792197 | None:intergenic | 40.0% | |
| TCAAGGAACCTTTCCTGTTA+AGG | + | chr1.3:56791345-56791364 | MS.gene43961:CDS | 40.0% | |
| TCAGACGAATATGTATCGTC+CGG | + | chr1.3:56790649-56790668 | MS.gene43961:CDS | 40.0% | |
| TCCACCCATTTATAGTCTGA+AGG | - | chr1.3:56793531-56793550 | None:intergenic | 40.0% | |
| TCCTTCAGACTATAAATGGG+TGG | + | chr1.3:56793527-56793546 | MS.gene43961:CDS | 40.0% | |
| TGGAGTCTTCAAAACGAACA+AGG | + | chr1.3:56790152-56790171 | MS.gene43961:CDS | 40.0% | |
| TGGTGTGGTTAAAGAGAAGA+AGG | + | chr1.3:56791006-56791025 | MS.gene43961:CDS | 40.0% | |
| TGGTTAAAGAGAAGAAGGGT+TGG | + | chr1.3:56791011-56791030 | MS.gene43961:CDS | 40.0% | |
| TTAACAGGAAAGGTTCCTTG+AGG | - | chr1.3:56791346-56791365 | None:intergenic | 40.0% | |
| TTGTTCCGAATCTGAATTGG+AGG | + | chr1.3:56790696-56790715 | MS.gene43961:CDS | 40.0% | |
| ! | ACTTTACTCTTGGAGTGCTA+GGG | - | chr1.3:56792905-56792924 | None:intergenic | 40.0% |
| ! | AGAGGTTTTTGCAAATGGAG+AGG | + | chr1.3:56790829-56790848 | MS.gene43961:CDS | 40.0% |
| ! | AGCTTGTTCCGAATCTGAAT+TGG | + | chr1.3:56790693-56790712 | MS.gene43961:CDS | 40.0% |
| ! | ATGACTTTAGCTGGTTTCGA+TGG | + | chr1.3:56790431-56790450 | MS.gene43961:CDS | 40.0% |
| ! | ATGGTACGGCATTATTTCTC+AGG | + | chr1.3:56793225-56793244 | MS.gene43961:CDS | 40.0% |
| ! | ATTGATGTTTAGAACGCCAC+CGG | - | chr1.3:56792929-56792948 | None:intergenic | 40.0% |
| ! | GACGAAGAGGTTTTTGCAAA+TGG | + | chr1.3:56790824-56790843 | MS.gene43961:CDS | 40.0% |
| ! | TGACTTTAGCTGGTTTCGAT+GGG | + | chr1.3:56790432-56790451 | MS.gene43961:CDS | 40.0% |
| !! | AAAGAGAAGAAGGGTTGGTT+TGG | + | chr1.3:56791016-56791035 | MS.gene43961:CDS | 40.0% |
| !! | AAGGATAAGACAGCGGATTT+TGG | - | chr1.3:56793010-56793029 | None:intergenic | 40.0% |
| !! | CCAGAATAATGGACATTTGG+AGG | - | chr1.3:56791767-56791786 | None:intergenic | 40.0% |
| !!! | GAGTTTTTTGTTTCTCGGTG+AGG | + | chr1.3:56790478-56790497 | MS.gene43961:CDS | 40.0% |
| AAAATCACGAATCCGCGAAG+CGG | - | chr1.3:56790300-56790319 | None:intergenic | 45.0% | |
| AACCTCTTGCTTGGTCCAAA+TGG | + | chr1.3:56790246-56790265 | MS.gene43961:CDS | 45.0% | |
| AACGCCGTATGAAGGCAAAA+AGG | + | chr1.3:56793565-56793584 | MS.gene43961:CDS | 45.0% | |
| AATGGGTGGATGCAAATGAG+AGG | + | chr1.3:56793541-56793560 | MS.gene43961:CDS | 45.0% | |
| ACGCCGTATGAAGGCAAAAA+GGG | + | chr1.3:56793566-56793585 | MS.gene43961:CDS | 45.0% | |
| AGACGAATATGTATCGTCCG+GGG | + | chr1.3:56790651-56790670 | MS.gene43961:CDS | 45.0% | |
| AGAGCAATCAAAGAACCACG+CGG | - | chr1.3:56790536-56790555 | None:intergenic | 45.0% | |
| AGGAGAAGACGGAGGTTATT+GGG | + | chr1.3:56790723-56790742 | MS.gene43961:CDS | 45.0% | |
| AGGAGATTGCCACGTGTTAT+AGG | + | chr1.3:56790272-56790291 | MS.gene43961:CDS | 45.0% | |
| AGTGAGAGTGAGTTCAAACG+AGG | + | chr1.3:56791190-56791209 | MS.gene43961:CDS | 45.0% | |
| AGTGGAGTTGAAAACTCCTC+CGG | - | chr1.3:56793348-56793367 | None:intergenic | 45.0% | |
| ATCCAAGGAATCAGAAGGGT+CGG | + | chr1.3:56793398-56793417 | MS.gene43961:CDS | 45.0% | |
| ATTTGAGGAGCTTCAGACAC+CGG | + | chr1.3:56793326-56793345 | MS.gene43961:CDS | 45.0% | |
| CAGACGAATATGTATCGTCC+GGG | + | chr1.3:56790650-56790669 | MS.gene43961:CDS | 45.0% | |
| CAGCAATAGCATAACCAGAG+AGG | - | chr1.3:56793251-56793270 | None:intergenic | 45.0% | |
| CATCAGGGGAGTGATGATTT+CGG | + | chr1.3:56793642-56793661 | MS.gene43961:CDS | 45.0% | |
| CTGGAGTTCTCTTCAAGAAG+CGG | + | chr1.3:56790175-56790194 | MS.gene43961:CDS | 45.0% | |
| CTTCCAGGATGCTAAATCCA+AGG | + | chr1.3:56793383-56793402 | MS.gene43961:CDS | 45.0% | |
| GCAAAGCGACTTCCATATGT+TGG | + | chr1.3:56792808-56792827 | MS.gene43961:intron | 45.0% | |
| GCCTATACCCAGTACTCTTT+AGG | + | chr1.3:56792708-56792727 | MS.gene43961:intron | 45.0% | |
| GTCTTCAAAACGAACAAGGC+TGG | + | chr1.3:56790156-56790175 | MS.gene43961:CDS | 45.0% | |
| GTGCTAATTGAGCACTTGCA+TGG | + | chr1.3:56792647-56792666 | MS.gene43961:intron | 45.0% | |
| GTGCTAGGGTTCTCATATGT+AGG | - | chr1.3:56792891-56792910 | None:intergenic | 45.0% | |
| TCATGGATGAAAGGAAGTCG+TGG | + | chr1.3:56793432-56793451 | MS.gene43961:CDS | 45.0% | |
| TCCTGGGTTTCATGGATGAA+AGG | + | chr1.3:56793423-56793442 | MS.gene43961:CDS | 45.0% | |
| TCCTTTCATCCATGAAACCC+AGG | - | chr1.3:56793427-56793446 | None:intergenic | 45.0% | |
| TCTTGTGTCAACCACAAGAC+AGG | - | chr1.3:56791223-56791242 | None:intergenic | 45.0% | |
| TGACGCCTCCAATTCAGATT+CGG | - | chr1.3:56790704-56790723 | None:intergenic | 45.0% | |
| TGATCCTCCTTCGGAAAATC+AGG | - | chr1.3:56791091-56791110 | None:intergenic | 45.0% | |
| TGATCGCTCAATCTCTGGTT+TGG | - | chr1.3:56791055-56791074 | None:intergenic | 45.0% | |
| TGCAATTGGATTCGGCTTTG+AGG | + | chr1.3:56790885-56790904 | MS.gene43961:CDS | 45.0% | |
| TGCTCTTGCTCATAAGGAGA+AGG | + | chr1.3:56790550-56790569 | MS.gene43961:CDS | 45.0% | |
| TGGCACCACGTTTCCAAATA+CGG | - | chr1.3:56790397-56790416 | None:intergenic | 45.0% | |
| TGGGTTTCGAATTCAGCGTT+CGG | + | chr1.3:56790451-56790470 | MS.gene43961:CDS | 45.0% | |
| TGGTGAGTGTGAAATCGAGA+CGG | + | chr1.3:56790783-56790802 | MS.gene43961:CDS | 45.0% | |
| TGGTTATGCTATTGCTGTGC+AGG | + | chr1.3:56793254-56793273 | MS.gene43961:CDS | 45.0% | |
| TTCGCAATCTCACTTTCGGT+CGG | - | chr1.3:56790611-56790630 | None:intergenic | 45.0% | |
| TTTGCTGATCGCTCAATCTC+TGG | - | chr1.3:56791060-56791079 | None:intergenic | 45.0% | |
| ! | ATTTTCCGAAGGAGGATCAC+GGG | + | chr1.3:56791092-56791111 | MS.gene43961:CDS | 45.0% |
| ! | CATTATTTCTCAGGCCTCTC+TGG | + | chr1.3:56793234-56793253 | MS.gene43961:CDS | 45.0% |
| ! | CGTGCTGATATGACTTTAGC+TGG | + | chr1.3:56790422-56790441 | MS.gene43961:CDS | 45.0% |
| ! | GACTTTACTCTTGGAGTGCT+AGG | - | chr1.3:56792906-56792925 | None:intergenic | 45.0% |
| ! | GATTTTCCGAAGGAGGATCA+CGG | + | chr1.3:56791091-56791110 | MS.gene43961:CDS | 45.0% |
| ! | GGAGAGAGTGCAATTGGATT+CGG | + | chr1.3:56790877-56790896 | MS.gene43961:CDS | 45.0% |
| ! | TCTTCGTCATTCAAAGCACC+AGG | - | chr1.3:56790812-56790831 | None:intergenic | 45.0% |
| ! | TGGCCCTTTTTGCCTTCATA+CGG | - | chr1.3:56793572-56793591 | None:intergenic | 45.0% |
| ! | TGGTGCTTTGAATGACGAAG+AGG | + | chr1.3:56790811-56790830 | MS.gene43961:CDS | 45.0% |
| ! | TGTGTCAGCCTAAAGAGTAC+TGG | - | chr1.3:56792719-56792738 | None:intergenic | 45.0% |
| ! | TTGATGTTTAGAACGCCACC+GGG | - | chr1.3:56792928-56792947 | None:intergenic | 45.0% |
| !! | AGAAGAAGGGTTGGTTTGGA+TGG | + | chr1.3:56791020-56791039 | MS.gene43961:CDS | 45.0% |
| !! | ATTGGATTCGGCTTTGAGGA+TGG | + | chr1.3:56790889-56790908 | MS.gene43961:CDS | 45.0% |
| !! | GCCTAAAGAGTACTGGGTAT+AGG | - | chr1.3:56792712-56792731 | None:intergenic | 45.0% |
| !! | GTGTCAGCCTAAAGAGTACT+GGG | - | chr1.3:56792718-56792737 | None:intergenic | 45.0% |
| !! | TGATGATGTGTTGACTGCTG+AGG | + | chr1.3:56790856-56790875 | MS.gene43961:CDS | 45.0% |
| !! | TTGGATTCGGCTTTGAGGAT+GGG | + | chr1.3:56790890-56790909 | MS.gene43961:CDS | 45.0% |
| AGACGGAGGTTATTGGGGAT+TGG | + | chr1.3:56790729-56790748 | MS.gene43961:CDS | 50.0% | |
| AGGAAGAGATGGAGTGCATC+AGG | + | chr1.3:56793626-56793645 | MS.gene43961:CDS | 50.0% | |
| AGTTAAGAGTGGGGGGGATA+AGG | - | chr1.3:56791675-56791694 | None:intergenic | 50.0% | |
| ATTTCCCCGTGATCCTCCTT+CGG | - | chr1.3:56791100-56791119 | None:intergenic | 50.0% | |
| CACCATTTGGACCAAGCAAG+AGG | - | chr1.3:56790251-56790270 | None:intergenic | 50.0% | |
| CAGGAGAAGACGGAGGTTAT+TGG | + | chr1.3:56790722-56790741 | MS.gene43961:CDS | 50.0% | |
| GAAGAGATGGAGTGCATCAG+GGG | + | chr1.3:56793628-56793647 | MS.gene43961:CDS | 50.0% | |
| GAAGCGGAACCTATAACACG+TGG | - | chr1.3:56790284-56790303 | None:intergenic | 50.0% | |
| GAGGTGTAAGACCTGTCTTG+TGG | + | chr1.3:56791209-56791228 | MS.gene43961:CDS | 50.0% | |
| GCACTCCAAGAGTAAAGTCC+CGG | + | chr1.3:56792907-56792926 | MS.gene43961:intron | 50.0% | |
| GCCTGAGTAACATCAATCCC+CGG | - | chr1.3:56790671-56790690 | None:intergenic | 50.0% | |
| GGAAGAGATGGAGTGCATCA+GGG | + | chr1.3:56793627-56793646 | MS.gene43961:CDS | 50.0% | |
| GGAGAAGACGGAGGTTATTG+GGG | + | chr1.3:56790724-56790743 | MS.gene43961:CDS | 50.0% | |
| GGAGGTTATTGGGGATTGGA+AGG | + | chr1.3:56790733-56790752 | MS.gene43961:CDS | 50.0% | |
| GGATGGTGTTTGTCAAGACG+AGG | + | chr1.3:56790919-56790938 | MS.gene43961:CDS | 50.0% | |
| GGGGATTGATGTTACTCAGG+CGG | + | chr1.3:56790670-56790689 | MS.gene43961:CDS | 50.0% | |
| GGTGAGTGTGAAATCGAGAC+GGG | + | chr1.3:56790784-56790803 | MS.gene43961:CDS | 50.0% | |
| GTGTTATAGGTTCCGCTTCG+CGG | + | chr1.3:56790285-56790304 | MS.gene43961:CDS | 50.0% | |
| GTTTGTCAAGACGAGGAACC+TGG | + | chr1.3:56790926-56790945 | MS.gene43961:CDS | 50.0% | |
| TAGCATCCTGGAAGCTGACA+GGG | - | chr1.3:56793377-56793396 | None:intergenic | 50.0% | |
| TATTGGGGATTGGAAGGCGA+AGG | + | chr1.3:56790739-56790758 | MS.gene43961:CDS | 50.0% | |
| TCCGGGGATTGATGTTACTC+AGG | + | chr1.3:56790667-56790686 | MS.gene43961:CDS | 50.0% | |
| TCTCGGTGAGGGTTATGCTT+CGG | + | chr1.3:56790490-56790509 | MS.gene43961:CDS | 50.0% | |
| TGAGAGGAAACGCCGTATGA+AGG | + | chr1.3:56793557-56793576 | MS.gene43961:CDS | 50.0% | |
| TGGCAATCTCCTGCACCATT+TGG | - | chr1.3:56790264-56790283 | None:intergenic | 50.0% | |
| TTAGCATCCTGGAAGCTGAC+AGG | - | chr1.3:56793378-56793397 | None:intergenic | 50.0% | |
| TTGCTTGGTCCAAATGGTGC+AGG | + | chr1.3:56790252-56790271 | MS.gene43961:CDS | 50.0% | |
| ! | ACAGCCTGATTTTCCGAAGG+AGG | + | chr1.3:56791084-56791103 | MS.gene43961:CDS | 50.0% |
| ! | GCTACAGCCTGATTTTCCGA+AGG | + | chr1.3:56791081-56791100 | MS.gene43961:CDS | 50.0% |
| ! | TGCTGAGGAGAGAGTGCAAT+TGG | + | chr1.3:56790871-56790890 | MS.gene43961:CDS | 50.0% |
| ! | TTTTCCGAAGGAGGATCACG+GGG | + | chr1.3:56791093-56791112 | MS.gene43961:CDS | 50.0% |
| !! | AAGAGTACTGGGTATAGGCC+AGG | - | chr1.3:56792707-56792726 | None:intergenic | 50.0% |
| !! | AGAGTACTGGGTATAGGCCA+GGG | - | chr1.3:56792706-56792725 | None:intergenic | 50.0% |
| !! | GAATCTGAATTGGAGGCGTC+AGG | + | chr1.3:56790703-56790722 | MS.gene43961:CDS | 50.0% |
| !! | TGGATTCGGCTTTGAGGATG+GGG | + | chr1.3:56790891-56790910 | MS.gene43961:CDS | 50.0% |
| AAGCTGACAGGGCTAGAGAG+TGG | - | chr1.3:56793366-56793385 | None:intergenic | 55.0% | |
| AATCAGAAGGGTCGGCATCC+TGG | + | chr1.3:56793406-56793425 | MS.gene43961:CDS | 55.0% | |
| ATCAGAAGGGTCGGCATCCT+GGG | + | chr1.3:56793407-56793426 | MS.gene43961:CDS | 55.0% | |
| CTCCAAGAGTAAAGTCCCGG+TGG | + | chr1.3:56792910-56792929 | MS.gene43961:intron | 55.0% | |
| GAGGGTTATGCTTCGGAGGA+TGG | + | chr1.3:56790497-56790516 | MS.gene43961:CDS | 55.0% | |
| GCAGCAGGAGGAGGATTTGA+TGG | + | chr1.3:56790950-56790969 | MS.gene43961:CDS | 55.0% | |
| TGAGAAGCTTTCCGAGACCC+TGG | + | chr1.3:56792686-56792705 | MS.gene43961:intron | 55.0% | |
| TGCCGACCCTTCTGATTCCT+TGG | - | chr1.3:56793403-56793422 | None:intergenic | 55.0% | |
| TTGAAGACTCCAATCGGCGC+CGG | - | chr1.3:56790144-56790163 | None:intergenic | 55.0% | |
| TTGAGGATGGGGAACTCGGA+TGG | + | chr1.3:56790902-56790921 | MS.gene43961:CDS | 55.0% | |
| ! | GGAGGAGGATTTGATGGTCG+CGG | + | chr1.3:56790956-56790975 | MS.gene43961:CDS | 55.0% |
| ! | GTGAAATCGAGACGGGTTCC+TGG | + | chr1.3:56790791-56790810 | MS.gene43961:CDS | 55.0% |
| !! | ACGAATGCTTTGGAAGGGGC+TGG | + | chr1.3:56790578-56790597 | MS.gene43961:CDS | 55.0% |
| !! | GGCTTTGAGGATGGGGAACT+CGG | + | chr1.3:56790898-56790917 | MS.gene43961:CDS | 55.0% |
| !! | TTGGAGGCGTCAGGAGAAGA+CGG | + | chr1.3:56790712-56790731 | MS.gene43961:CDS | 55.0% |
| AATCCTCCTCCTGCTGCTCC+AGG | - | chr1.3:56790947-56790966 | None:intergenic | 60.0% | |
| CAAGGAGGGGGGAGAATGTC+TGG | - | chr1.3:56792375-56792394 | None:intergenic | 60.0% | |
| CGCCACCGGGACTTTACTCT+TGG | - | chr1.3:56792915-56792934 | None:intergenic | 60.0% | |
| CGGTGAGGGTTATGCTTCGG+AGG | + | chr1.3:56790493-56790512 | MS.gene43961:CDS | 60.0% | |
| CTCTAGCCCTGTCAGCTTCC+AGG | + | chr1.3:56793368-56793387 | MS.gene43961:CDS | 60.0% | |
| CTGGGTATAGGCCAGGGTCT+CGG | - | chr1.3:56792700-56792719 | None:intergenic | 60.0% | |
| GGTAATGTGACGCTACCGCG+TGG | + | chr1.3:56790518-56790537 | MS.gene43961:CDS | 60.0% | |
| GGTCGGCATCCTGGGTTTCA+TGG | + | chr1.3:56793415-56793434 | MS.gene43961:CDS | 60.0% | |
| TGAGGAGCTTCAGACACCGG+AGG | + | chr1.3:56793329-56793348 | MS.gene43961:CDS | 60.0% | |
| GAACCTGGAGCAGCAGGAGG+AGG | + | chr1.3:56790941-56790960 | MS.gene43961:CDS | 65.0% | |
| GACGAGGAACCTGGAGCAGC+AGG | + | chr1.3:56790935-56790954 | MS.gene43961:CDS | 65.0% | |
| GAGGAACCTGGAGCAGCAGG+AGG | + | chr1.3:56790938-56790957 | MS.gene43961:CDS | 65.0% | |
| ! | AAGACTCCAATCGGCGCCGG+CGG | - | chr1.3:56790141-56790160 | None:intergenic | 65.0% |
| ! | GAGGCGTCAGGAGAAGACGG+AGG | + | chr1.3:56790715-56790734 | MS.gene43961:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 56790134 | 56793680 | 56790134 | ID=MS.gene43961 |
| chr1.3 | mRNA | 56790134 | 56793680 | 56790134 | ID=MS.gene43961.t1;Parent=MS.gene43961 |
| chr1.3 | exon | 56790134 | 56791366 | 56790134 | ID=MS.gene43961.t1.exon1;Parent=MS.gene43961.t1 |
| chr1.3 | CDS | 56790134 | 56791366 | 56790134 | ID=cds.MS.gene43961.t1;Parent=MS.gene43961.t1 |
| chr1.3 | exon | 56793044 | 56793093 | 56793044 | ID=MS.gene43961.t1.exon2;Parent=MS.gene43961.t1 |
| chr1.3 | CDS | 56793044 | 56793093 | 56793044 | ID=cds.MS.gene43961.t1;Parent=MS.gene43961.t1 |
| chr1.3 | exon | 56793218 | 56793680 | 56793218 | ID=MS.gene43961.t1.exon3;Parent=MS.gene43961.t1 |
| chr1.3 | CDS | 56793218 | 56793680 | 56793218 | ID=cds.MS.gene43961.t1;Parent=MS.gene43961.t1 |
| Gene Sequence |
| Protein sequence |
