Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45247.t1 | XP_003621371.1 | 86.1 | 137 | 1 | 1 | 1 | 137 | 1 | 119 | 2.40E-57 | 231.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45247.t1 | Q75GT2 | 57.8 | 135 | 38 | 3 | 3 | 137 | 4 | 119 | 4.9e-35 | 148.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45247.t1 | G7L472 | 86.1 | 137 | 1 | 1 | 1 | 137 | 1 | 119 | 1.7e-57 | 231.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050815 | MS.gene45247 | -0.822462 | 2.34E-53 | -1.69E-46 |
| MS.gene056069 | MS.gene45247 | 0.846704 | 1.84E-59 | -1.69E-46 |
| MS.gene057527 | MS.gene45247 | 0.843683 | 1.21E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45247 | MS.gene86087 | PPI |
| MS.gene45247 | MS.gene057527 | PPI |
| MS.gene97583 | MS.gene45247 | PPI |
| MS.gene45247 | MS.gene021818 | PPI |
| MS.gene031139 | MS.gene45247 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45247.t1 | MTR_7g012560 | 86.131 | 137 | 1 | 1 | 1 | 137 | 1 | 119 | 2.54e-80 | 232 |
| MS.gene45247.t1 | MTR_7g012560 | 97.143 | 105 | 3 | 0 | 1 | 105 | 1 | 105 | 2.36e-71 | 209 |
| MS.gene45247.t1 | MTR_6g013820 | 66.423 | 137 | 26 | 2 | 1 | 137 | 1 | 117 | 5.24e-56 | 171 |
| MS.gene45247.t1 | MTR_7g027300 | 46.269 | 134 | 54 | 2 | 4 | 137 | 3 | 118 | 2.50e-35 | 118 |
| MS.gene45247.t1 | MTR_7g027017 | 47.154 | 123 | 58 | 2 | 9 | 126 | 8 | 128 | 6.38e-32 | 115 |
| MS.gene45247.t1 | MTR_8g096380 | 52.174 | 92 | 42 | 1 | 5 | 96 | 4 | 93 | 2.03e-29 | 103 |
| MS.gene45247.t1 | MTR_7g108180 | 43.137 | 102 | 54 | 3 | 1 | 101 | 1 | 99 | 6.40e-25 | 92.4 |
| MS.gene45247.t1 | MTR_8g096390 | 45.556 | 90 | 45 | 2 | 5 | 92 | 4 | 91 | 5.27e-22 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45247.t1 | AT5G15460 | 64.646 | 99 | 33 | 1 | 1 | 99 | 1 | 97 | 3.70e-42 | 136 |
| MS.gene45247.t1 | AT5G15460 | 64.646 | 99 | 33 | 1 | 1 | 99 | 1 | 97 | 3.70e-42 | 136 |
| MS.gene45247.t1 | AT5G15460 | 64.646 | 99 | 33 | 1 | 1 | 99 | 1 | 97 | 3.70e-42 | 136 |
| MS.gene45247.t1 | AT3G01050 | 46.715 | 137 | 53 | 2 | 1 | 137 | 1 | 117 | 3.44e-40 | 130 |
| MS.gene45247.t1 | AT3G01050 | 46.715 | 137 | 53 | 2 | 1 | 137 | 1 | 117 | 3.44e-40 | 130 |
| MS.gene45247.t1 | AT3G01050 | 46.715 | 137 | 53 | 2 | 1 | 137 | 1 | 117 | 3.44e-40 | 130 |
| MS.gene45247.t1 | AT3G01050 | 46.715 | 137 | 53 | 2 | 1 | 137 | 1 | 117 | 3.44e-40 | 130 |
| MS.gene45247.t1 | AT3G01050 | 46.715 | 137 | 53 | 2 | 1 | 137 | 1 | 117 | 3.44e-40 | 130 |
| MS.gene45247.t1 | AT1G22050 | 43.478 | 138 | 58 | 3 | 1 | 137 | 1 | 119 | 2.86e-38 | 126 |
| MS.gene45247.t1 | AT1G77870 | 54.545 | 99 | 45 | 0 | 3 | 101 | 2 | 100 | 1.93e-36 | 121 |
| MS.gene45247.t1 | AT4G24990 | 55.435 | 92 | 39 | 1 | 5 | 96 | 4 | 93 | 2.34e-31 | 108 |
| MS.gene45247.t1 | AT4G24990 | 55.435 | 92 | 39 | 1 | 5 | 96 | 4 | 93 | 2.34e-31 | 108 |
| MS.gene45247.t1 | AT3G26980 | 52.174 | 92 | 42 | 1 | 4 | 95 | 3 | 92 | 1.28e-29 | 104 |
| MS.gene45247.t1 | AT5G15460 | 57.143 | 63 | 25 | 1 | 37 | 99 | 11 | 71 | 9.52e-18 | 73.2 |
Find 34 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGATCTCAAACTGTTCT+TGG | 0.235141 | 7.3:-85488960 | None:intergenic |
| GCTGCTTTCTTATCTGTATA+AGG | 0.267495 | 7.3:-85491086 | None:intergenic |
| CTCAAACTGTTCTTGGTTCC+CGG | 0.316859 | 7.3:-85488953 | None:intergenic |
| AGTGGCGGCAGGAAAACTTT+TGG | 0.362153 | 7.3:-85489013 | None:intergenic |
| CACATAAAGGGCTTTGGCTC+TGG | 0.376161 | 7.3:-85490144 | None:intergenic |
| TTGACGGATGGTTCTGATAT+CGG | 0.410506 | 7.3:+85488988 | MS.gene45247:CDS |
| GTACCAGGGGTATCACATAA+AGG | 0.432829 | 7.3:-85490157 | None:intergenic |
| AACAGTTTGAGATCAAGTTT+AGG | 0.441071 | 7.3:+85488965 | MS.gene45247:CDS |
| CTTGGATCTCCGAGCATGAC+CGG | 0.442129 | 7.3:+85488934 | None:intergenic |
| TGAGATCAAGTTTAGGTTGA+CGG | 0.445292 | 7.3:+85488972 | MS.gene45247:CDS |
| AAGAAAGTATTCTTGCTCAA+TGG | 0.479119 | 7.3:+85489052 | MS.gene45247:CDS |
| TACCAGGGGTATCACATAAA+GGG | 0.490754 | 7.3:-85490156 | None:intergenic |
| ATTCTTGCTCAATGGCCAAA+AGG | 0.495557 | 7.3:+85489060 | MS.gene45247:CDS |
| GGGTATCACATAAAGGGCTT+TGG | 0.495798 | 7.3:-85490150 | None:intergenic |
| TGCATTGTTGTAACAGTACC+AGG | 0.498824 | 7.3:-85490172 | None:intergenic |
| ATGAGACCTTTGTCTGTAGT+AGG | 0.520288 | 7.3:-85490211 | None:intergenic |
| GATTTGAAGTTAATCAGTGC+AGG | 0.542038 | 7.3:+85490085 | MS.gene45247:CDS |
| TTTCAATGTTGCAATACTAG+TGG | 0.550833 | 7.3:-85489031 | None:intergenic |
| TTGGATCTCCGAGCATGACC+GGG | 0.551174 | 7.3:+85488935 | None:intergenic |
| ATCAAGTTTAGGTTGACGGA+TGG | 0.578278 | 7.3:+85488976 | MS.gene45247:CDS |
| CAATGTTGCAATACTAGTGG+CGG | 0.583009 | 7.3:-85489028 | None:intergenic |
| GTTGCAATACTAGTGGCGGC+AGG | 0.593429 | 7.3:-85489024 | None:intergenic |
| TCCACCATGTCAATATGTGT+CGG | 0.617269 | 7.3:-85491056 | None:intergenic |
| TTGGAGAACAACAAAACAGT+CGG | 0.627089 | 7.3:+85490115 | MS.gene45247:CDS |
| AGCCCTTTATGTGATACCCC+TGG | 0.627346 | 7.3:+85490154 | MS.gene45247:CDS |
| AGACCTTTGTCTGTAGTAGG+TGG | 0.637038 | 7.3:-85490208 | None:intergenic |
| CATTGTTGTAACAGTACCAG+GGG | 0.659317 | 7.3:-85490170 | None:intergenic |
| GATGCAGCACAGCACAAATG+TGG | 0.659452 | 7.3:+85491113 | MS.gene45247:CDS |
| CAACCACCTACTACAGACAA+AGG | 0.663273 | 7.3:+85490205 | MS.gene45247:CDS |
| GCATTGTTGTAACAGTACCA+GGG | 0.672978 | 7.3:-85490171 | None:intergenic |
| AAGATAAGGAGAATGTGCCA+AGG | 0.679109 | 7.3:+85490053 | MS.gene45247:intron |
| TCATCCGACACATATTGACA+TGG | 0.682277 | 7.3:+85491052 | MS.gene45247:CDS |
| TCCGACACATATTGACATGG+TGG | 0.696078 | 7.3:+85491055 | MS.gene45247:CDS |
| TACTGTTACAACAATGCATG+TGG | 0.701570 | 7.3:+85490177 | MS.gene45247:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAATAATTAGAACT+AGG | - | chr7.3:85490260-85490279 | None:intergenic | 10.0% |
| !! | AATAATGAATAAAAAAAACA+AGG | - | chr7.3:85490461-85490480 | None:intergenic | 10.0% |
| !! | ATAATGAATAAAAAAAACAA+GGG | - | chr7.3:85490460-85490479 | None:intergenic | 10.0% |
| !! | ATTCAAAATATCACATTAAA+TGG | - | chr7.3:85489600-85489619 | None:intergenic | 15.0% |
| !! | TCTTAAAAAAAATTATCAGT+AGG | - | chr7.3:85489314-85489333 | None:intergenic | 15.0% |
| !!! | ACTGATAATTTTTTTTAAGA+GGG | + | chr7.3:85489314-85489333 | MS.gene45247:intron | 15.0% |
| !!! | GATAAATTATTCTTTTTCAA+AGG | + | chr7.3:85490305-85490324 | MS.gene45247:intron | 15.0% |
| !!! | TACTGATAATTTTTTTTAAG+AGG | + | chr7.3:85489313-85489332 | MS.gene45247:intron | 15.0% |
| !! | TAATAATTAGAACTAGGATT+TGG | - | chr7.3:85490254-85490273 | None:intergenic | 20.0% |
| !! | TACAAGATAGTTAATGAAAA+TGG | + | chr7.3:85490694-85490713 | MS.gene45247:intron | 20.0% |
| !! | TGATTGACATATTAATTATG+AGG | + | chr7.3:85490395-85490414 | MS.gene45247:intron | 20.0% |
| !! | TGTTTAAAGAAGTAATATAC+TGG | - | chr7.3:85490870-85490889 | None:intergenic | 20.0% |
| !! | TTAATATGTCAATCAATAAC+AGG | - | chr7.3:85490390-85490409 | None:intergenic | 20.0% |
| !! | TTATAGAAATAAGCTGAAAA+AGG | - | chr7.3:85490670-85490689 | None:intergenic | 20.0% |
| !!! | CTGATAATTTTTTTTAAGAG+GGG | + | chr7.3:85489315-85489334 | MS.gene45247:intron | 20.0% |
| ! | AAATTTAATGCTGTTCTGTT+TGG | + | chr7.3:85490999-85491018 | MS.gene45247:intron | 25.0% |
| ! | AAGGTAATGAACATATCATA+AGG | - | chr7.3:85490651-85490670 | None:intergenic | 25.0% |
| ! | AGAAACAAACTACTAAATGA+CGG | - | chr7.3:85489761-85489780 | None:intergenic | 25.0% |
| ! | CAAATCTGACATAGATAATT+TGG | - | chr7.3:85489145-85489164 | None:intergenic | 25.0% |
| ! | CTTCATAGAAAGAAAAGTTT+AGG | + | chr7.3:85489652-85489671 | MS.gene45247:intron | 25.0% |
| ! | CTTTAAACATGTTTATACTC+TGG | + | chr7.3:85490881-85490900 | MS.gene45247:intron | 25.0% |
| ! | TTAAATTTAAGAAGCAAGCA+TGG | - | chr7.3:85490987-85491006 | None:intergenic | 25.0% |
| !! | ATCAGTTAAGAAAGTATGTA+AGG | + | chr7.3:85489680-85489699 | MS.gene45247:intron | 25.0% |
| !! | TTCAAATCTTTTATAGTCCT+TGG | - | chr7.3:85490073-85490092 | None:intergenic | 25.0% |
| !!! | GTTCGGTTTTTAAAACATTA+TGG | + | chr7.3:85489940-85489959 | MS.gene45247:intron | 25.0% |
| !!! | TAATTTTTTTTAAGAGGGGT+AGG | + | chr7.3:85489319-85489338 | MS.gene45247:intron | 25.0% |
| !!! | TGTTTTCCACATTTAGTTTA+AGG | - | chr7.3:85489726-85489745 | None:intergenic | 25.0% |
| !!! | TTATTTTAGCAATTCGACTA+CGG | + | chr7.3:85489853-85489872 | MS.gene45247:intron | 25.0% |
| AACTAAATGTGGAAAACACT+AGG | + | chr7.3:85489728-85489747 | MS.gene45247:intron | 30.0% | |
| AATCAGTGCAGGAAAAATAT+TGG | + | chr7.3:85490096-85490115 | MS.gene45247:CDS | 30.0% | |
| ACAATGTTTCTTACAACAAC+GGG | - | chr7.3:85489189-85489208 | None:intergenic | 30.0% | |
| ATAGAGCCTTAAACTAAATG+TGG | + | chr7.3:85489717-85489736 | MS.gene45247:intron | 30.0% | |
| ATTAAGCTAAAAACCCGAAA+AGG | - | chr7.3:85489120-85489139 | None:intergenic | 30.0% | |
| CACAATGTTTCTTACAACAA+CGG | - | chr7.3:85489190-85489209 | None:intergenic | 30.0% | |
| CTAAAATAACTGAACAGTGA+AGG | - | chr7.3:85489842-85489861 | None:intergenic | 30.0% | |
| TTAAGCTAAAAACCCGAAAA+GGG | - | chr7.3:85489119-85489138 | None:intergenic | 30.0% | |
| TTTAAGCAATCACTACATCT+AGG | - | chr7.3:85489500-85489519 | None:intergenic | 30.0% | |
| TTTCAATGTTGCAATACTAG+TGG | - | chr7.3:85489034-85489053 | None:intergenic | 30.0% | |
| ! | AACAGTTTGAGATCAAGTTT+AGG | + | chr7.3:85488965-85488984 | MS.gene45247:CDS | 30.0% |
| ! | ACACAAAACAACTAACCTTT+TGG | - | chr7.3:85489078-85489097 | None:intergenic | 30.0% |
| ! | ATTTTACTACAAGTCCTGTT+TGG | - | chr7.3:85490805-85490824 | None:intergenic | 30.0% |
| ! | CTAATGACATAAGCTTTTGA+GGG | + | chr7.3:85490599-85490618 | MS.gene45247:intron | 30.0% |
| ! | TCTAATGACATAAGCTTTTG+AGG | + | chr7.3:85490598-85490617 | MS.gene45247:intron | 30.0% |
| ! | TTAGTTTAAGGCTCTATTTG+AGG | - | chr7.3:85489714-85489733 | None:intergenic | 30.0% |
| !! | AAGAAAGTATTCTTGCTCAA+TGG | + | chr7.3:85489052-85489071 | MS.gene45247:CDS | 30.0% |
| !!! | TGTGTTGTGTTTTGAAGATA+AGG | + | chr7.3:85490039-85490058 | MS.gene45247:intron | 30.0% |
| AATAGATATAACTGCCACCA+GGG | + | chr7.3:85489220-85489239 | MS.gene45247:intron | 35.0% | |
| ACTTGATCTCAAACTGTTCT+TGG | - | chr7.3:85488963-85488982 | None:intergenic | 35.0% | |
| ATATACTGGATATGTCAAGC+TGG | - | chr7.3:85490856-85490875 | None:intergenic | 35.0% | |
| TAATAGATATAACTGCCACC+AGG | + | chr7.3:85489219-85489238 | MS.gene45247:intron | 35.0% | |
| TACTGTTACAACAATGCATG+TGG | + | chr7.3:85490177-85490196 | MS.gene45247:CDS | 35.0% | |
| TCAAACGTGTCAATCAAGAA+AGG | - | chr7.3:85490573-85490592 | None:intergenic | 35.0% | |
| TCTTTCTATGAAGCATATGC+AGG | - | chr7.3:85489645-85489664 | None:intergenic | 35.0% | |
| TGATGAGATCAGAGAAGAAA+AGG | + | chr7.3:85489559-85489578 | MS.gene45247:intron | 35.0% | |
| TTCCTTGACAGCTAAGTTAA+AGG | - | chr7.3:85490430-85490449 | None:intergenic | 35.0% | |
| TTGGAGAACAACAAAACAGT+CGG | + | chr7.3:85490115-85490134 | MS.gene45247:CDS | 35.0% | |
| ! | ATCCTTTAACTTAGCTGTCA+AGG | + | chr7.3:85490425-85490444 | MS.gene45247:intron | 35.0% |
| ! | ATTGGATGGATTTGAAAACC+GGG | + | chr7.3:85489349-85489368 | MS.gene45247:intron | 35.0% |
| ! | CTTAAGTTGCTTATCCAAAC+AGG | + | chr7.3:85490788-85490807 | MS.gene45247:intron | 35.0% |
| ! | GATTGGATGGATTTGAAAAC+CGG | + | chr7.3:85489348-85489367 | MS.gene45247:intron | 35.0% |
| ! | GATTTGAAGTTAATCAGTGC+AGG | + | chr7.3:85490085-85490104 | MS.gene45247:CDS | 35.0% |
| ! | GCTGCTTTCTTATCTGTATA+AGG | - | chr7.3:85491089-85491108 | None:intergenic | 35.0% |
| ! | TTCTTTGTGCTTTCCCTTTT+CGG | + | chr7.3:85489103-85489122 | MS.gene45247:intron | 35.0% |
| !! | TGAGATCAAGTTTAGGTTGA+CGG | + | chr7.3:85488972-85488991 | MS.gene45247:CDS | 35.0% |
| !!! | TTTTTTTTAAGAGGGGTAGG+TGG | + | chr7.3:85489322-85489341 | MS.gene45247:intron | 35.0% |
| AAGATAAGGAGAATGTGCCA+AGG | + | chr7.3:85490053-85490072 | MS.gene45247:intron | 40.0% | |
| AATCGAACTTCTTGTTGCAG+GGG | - | chr7.3:85489291-85489310 | None:intergenic | 40.0% | |
| AGCAATCACTACATCTAGGT+TGG | - | chr7.3:85489496-85489515 | None:intergenic | 40.0% | |
| ATGAGACCTTTGTCTGTAGT+AGG | - | chr7.3:85490214-85490233 | None:intergenic | 40.0% | |
| ATTCTTGCTCAATGGCCAAA+AGG | + | chr7.3:85489060-85489079 | MS.gene45247:CDS | 40.0% | |
| CAATGTTGCAATACTAGTGG+CGG | - | chr7.3:85489031-85489050 | None:intergenic | 40.0% | |
| CATTGTTGTAACAGTACCAG+GGG | - | chr7.3:85490173-85490192 | None:intergenic | 40.0% | |
| CTGCCTTAAACCCCTTATAT+CGG | - | chr7.3:85489886-85489905 | None:intergenic | 40.0% | |
| GAACTAGGATTTGGCATTGT+TGG | - | chr7.3:85490245-85490264 | None:intergenic | 40.0% | |
| GAATCGAACTTCTTGTTGCA+GGG | - | chr7.3:85489292-85489311 | None:intergenic | 40.0% | |
| GCATTGTTGTAACAGTACCA+GGG | - | chr7.3:85490174-85490193 | None:intergenic | 40.0% | |
| TCAGCAAGACTTCTGGATTA+TGG | - | chr7.3:85489914-85489933 | None:intergenic | 40.0% | |
| TCATCCGACACATATTGACA+TGG | + | chr7.3:85491052-85491071 | MS.gene45247:CDS | 40.0% | |
| TCCACCATGTCAATATGTGT+CGG | - | chr7.3:85491059-85491078 | None:intergenic | 40.0% | |
| TGCATTGTTGTAACAGTACC+AGG | - | chr7.3:85490175-85490194 | None:intergenic | 40.0% | |
| TGCCTTAAACCCCTTATATC+GGG | - | chr7.3:85489885-85489904 | None:intergenic | 40.0% | |
| TTTGAAAACCGGGTGATATC+AGG | + | chr7.3:85489359-85489378 | MS.gene45247:intron | 40.0% | |
| ! | TCTTTGTGCTTTCCCTTTTC+GGG | + | chr7.3:85489104-85489123 | MS.gene45247:intron | 40.0% |
| !! | ACGGTTTTGTCCCGATATAA+GGG | + | chr7.3:85489872-85489891 | MS.gene45247:intron | 40.0% |
| !! | AGTCTTGCTGATTCGTTGTT+CGG | + | chr7.3:85489923-85489942 | MS.gene45247:intron | 40.0% |
| !! | ATCAAGTTTAGGTTGACGGA+TGG | + | chr7.3:85488976-85488995 | MS.gene45247:CDS | 40.0% |
| !! | CATGATCATCTGAGGCTTTT+GGG | + | chr7.3:85489384-85489403 | MS.gene45247:intron | 40.0% |
| !! | TACCAGGGGTATCACATAAA+GGG | - | chr7.3:85490159-85490178 | None:intergenic | 40.0% |
| !! | TACGGTTTTGTCCCGATATA+AGG | + | chr7.3:85489871-85489890 | MS.gene45247:intron | 40.0% |
| !! | TTGACGGATGGTTCTGATAT+CGG | + | chr7.3:85488988-85489007 | MS.gene45247:CDS | 40.0% |
| AGACCTTTGTCTGTAGTAGG+TGG | - | chr7.3:85490211-85490230 | None:intergenic | 45.0% | |
| ATCAGGTGCATGATCATCTG+AGG | + | chr7.3:85489376-85489395 | MS.gene45247:intron | 45.0% | |
| ATCATGCACCTGATATCACC+CGG | - | chr7.3:85489370-85489389 | None:intergenic | 45.0% | |
| CAACCACCTACTACAGACAA+AGG | + | chr7.3:85490205-85490224 | MS.gene45247:CDS | 45.0% | |
| CAACGAATCAGCAAGACTTC+TGG | - | chr7.3:85489921-85489940 | None:intergenic | 45.0% | |
| CTCAAACTGTTCTTGGTTCC+CGG | - | chr7.3:85488956-85488975 | None:intergenic | 45.0% | |
| GGAATCGAACTTCTTGTTGC+AGG | - | chr7.3:85489293-85489312 | None:intergenic | 45.0% | |
| GGGTATCACATAAAGGGCTT+TGG | - | chr7.3:85490153-85490172 | None:intergenic | 45.0% | |
| GTCCCGATATAAGGGGTTTA+AGG | + | chr7.3:85489880-85489899 | MS.gene45247:intron | 45.0% | |
| TCCGACACATATTGACATGG+TGG | + | chr7.3:85491055-85491074 | MS.gene45247:CDS | 45.0% | |
| TTACAGTCCTAGCTTCACAG+AGG | - | chr7.3:85490520-85490539 | None:intergenic | 45.0% | |
| TTCCTTACTGTCCTGCTTGA+CGG | + | chr7.3:85489791-85489810 | MS.gene45247:intron | 45.0% | |
| ! | AGGCTGATTCAAGGTTCAAC+CGG | - | chr7.3:85489822-85489841 | None:intergenic | 45.0% |
| ! | GAACAGTGAAGGCTGATTCA+AGG | - | chr7.3:85489831-85489850 | None:intergenic | 45.0% |
| !! | CGGTTTTGTCCCGATATAAG+GGG | + | chr7.3:85489873-85489892 | MS.gene45247:intron | 45.0% |
| !! | GCATGATCATCTGAGGCTTT+TGG | + | chr7.3:85489383-85489402 | MS.gene45247:intron | 45.0% |
| !! | GTACCAGGGGTATCACATAA+AGG | - | chr7.3:85490160-85490179 | None:intergenic | 45.0% |
| !!! | GGCTTTTGGGTTTGATGTAC+TGG | + | chr7.3:85489397-85489416 | MS.gene45247:intron | 45.0% |
| AACCGTCAAGCAGGACAGTA+AGG | - | chr7.3:85489796-85489815 | None:intergenic | 50.0% | |
| AGAGGGGTAGGTGGTTTGAT+TGG | + | chr7.3:85489331-85489350 | MS.gene45247:intron | 50.0% | |
| AGCCCTTTATGTGATACCCC+TGG | + | chr7.3:85490154-85490173 | MS.gene45247:CDS | 50.0% | |
| GATGCAGCACAGCACAAATG+TGG | + | chr7.3:85491113-85491132 | MS.gene45247:CDS | 50.0% | |
| GGGTAGGTGGTTTGATTGGA+TGG | + | chr7.3:85489335-85489354 | MS.gene45247:intron | 50.0% | |
| GTAGTCTCCTCTGTGAAGCT+AGG | + | chr7.3:85490510-85490529 | MS.gene45247:intron | 50.0% | |
| ! | AGTGGCGGCAGGAAAACTTT+TGG | - | chr7.3:85489016-85489035 | None:intergenic | 50.0% |
| ! | CACATAAAGGGCTTTGGCTC+TGG | - | chr7.3:85490147-85490166 | None:intergenic | 50.0% |
| ! | GTGGCGGCAGGAAAACTTTT+GGG | - | chr7.3:85489015-85489034 | None:intergenic | 50.0% |
| ! | TGGCGGCAGGAAAACTTTTG+GGG | - | chr7.3:85489014-85489033 | None:intergenic | 50.0% |
| AACCGGTTGAACCGTCAAGC+AGG | - | chr7.3:85489805-85489824 | None:intergenic | 55.0% | |
| GTCCTGCTTGACGGTTCAAC+CGG | + | chr7.3:85489800-85489819 | MS.gene45247:intron | 55.0% | |
| GTTGCAATACTAGTGGCGGC+AGG | - | chr7.3:85489027-85489046 | None:intergenic | 55.0% | |
| CAACCACTTGCGCTAGACCC+TGG | - | chr7.3:85489240-85489259 | None:intergenic | 60.0% | |
| CAGGGTCTAGCGCAAGTGGT+TGG | + | chr7.3:85489238-85489257 | MS.gene45247:intron | 60.0% | |
| ! | AGCGCAAGTGGTTGGTGTGC+AGG | + | chr7.3:85489246-85489265 | MS.gene45247:intron | 60.0% |
| ! | CGCAAGTGGTTGGTGTGCAG+GGG | + | chr7.3:85489248-85489267 | MS.gene45247:intron | 60.0% |
| ! | GCGCAAGTGGTTGGTGTGCA+GGG | + | chr7.3:85489247-85489266 | MS.gene45247:intron | 60.0% |
| CCACCAGGGTCTAGCGCAAG+TGG | + | chr7.3:85489234-85489253 | MS.gene45247:intron | 65.0% | |
| CCACTTGCGCTAGACCCTGG+TGG | - | chr7.3:85489237-85489256 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 85488949 | 85491151 | 85488949 | ID=MS.gene45247 |
| chr7.3 | mRNA | 85488949 | 85491151 | 85488949 | ID=MS.gene45247.t1;Parent=MS.gene45247 |
| chr7.3 | exon | 85488949 | 85489081 | 85488949 | ID=MS.gene45247.t1.exon1;Parent=MS.gene45247.t1 |
| chr7.3 | CDS | 85488949 | 85489081 | 85488949 | ID=cds.MS.gene45247.t1;Parent=MS.gene45247.t1 |
| chr7.3 | exon | 85490056 | 85490226 | 85490056 | ID=MS.gene45247.t1.exon2;Parent=MS.gene45247.t1 |
| chr7.3 | CDS | 85490056 | 85490226 | 85490056 | ID=cds.MS.gene45247.t1;Parent=MS.gene45247.t1 |
| chr7.3 | exon | 85491042 | 85491151 | 85491042 | ID=MS.gene45247.t1.exon3;Parent=MS.gene45247.t1 |
| chr7.3 | CDS | 85491042 | 85491151 | 85491042 | ID=cds.MS.gene45247.t1;Parent=MS.gene45247.t1 |
| Gene Sequence |
| Protein sequence |
