Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97583.t1 | XP_003621371.1 | 86.1 | 137 | 1 | 1 | 1 | 137 | 1 | 119 | 2.40E-57 | 231.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97583.t1 | Q75GT2 | 57.8 | 135 | 38 | 3 | 3 | 137 | 4 | 119 | 4.9e-35 | 148.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97583.t1 | G7L472 | 86.1 | 137 | 1 | 1 | 1 | 137 | 1 | 119 | 1.7e-57 | 231.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene97583 | MS.gene86087 | PPI |
| MS.gene97583 | MS.gene031139 | PPI |
| MS.gene97583 | MS.gene057527 | PPI |
| MS.gene97583 | MS.gene45247 | PPI |
| MS.gene97583 | MS.gene021818 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97583.t1 | MTR_7g012560 | 86.131 | 137 | 1 | 1 | 1 | 137 | 1 | 119 | 2.54e-80 | 232 |
| MS.gene97583.t1 | MTR_7g012560 | 97.143 | 105 | 3 | 0 | 1 | 105 | 1 | 105 | 2.36e-71 | 209 |
| MS.gene97583.t1 | MTR_6g013820 | 66.423 | 137 | 26 | 2 | 1 | 137 | 1 | 117 | 5.24e-56 | 171 |
| MS.gene97583.t1 | MTR_7g027300 | 46.269 | 134 | 54 | 2 | 4 | 137 | 3 | 118 | 2.50e-35 | 118 |
| MS.gene97583.t1 | MTR_7g027017 | 47.154 | 123 | 58 | 2 | 9 | 126 | 8 | 128 | 6.38e-32 | 115 |
| MS.gene97583.t1 | MTR_8g096380 | 52.174 | 92 | 42 | 1 | 5 | 96 | 4 | 93 | 2.03e-29 | 103 |
| MS.gene97583.t1 | MTR_7g108180 | 43.137 | 102 | 54 | 3 | 1 | 101 | 1 | 99 | 6.40e-25 | 92.4 |
| MS.gene97583.t1 | MTR_8g096390 | 45.556 | 90 | 45 | 2 | 5 | 92 | 4 | 91 | 5.27e-22 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97583.t1 | AT5G15460 | 64.646 | 99 | 33 | 1 | 1 | 99 | 1 | 97 | 3.70e-42 | 136 |
| MS.gene97583.t1 | AT5G15460 | 64.646 | 99 | 33 | 1 | 1 | 99 | 1 | 97 | 3.70e-42 | 136 |
| MS.gene97583.t1 | AT5G15460 | 64.646 | 99 | 33 | 1 | 1 | 99 | 1 | 97 | 3.70e-42 | 136 |
| MS.gene97583.t1 | AT3G01050 | 46.715 | 137 | 53 | 2 | 1 | 137 | 1 | 117 | 3.44e-40 | 130 |
| MS.gene97583.t1 | AT3G01050 | 46.715 | 137 | 53 | 2 | 1 | 137 | 1 | 117 | 3.44e-40 | 130 |
| MS.gene97583.t1 | AT3G01050 | 46.715 | 137 | 53 | 2 | 1 | 137 | 1 | 117 | 3.44e-40 | 130 |
| MS.gene97583.t1 | AT3G01050 | 46.715 | 137 | 53 | 2 | 1 | 137 | 1 | 117 | 3.44e-40 | 130 |
| MS.gene97583.t1 | AT3G01050 | 46.715 | 137 | 53 | 2 | 1 | 137 | 1 | 117 | 3.44e-40 | 130 |
| MS.gene97583.t1 | AT1G22050 | 43.478 | 138 | 58 | 3 | 1 | 137 | 1 | 119 | 2.86e-38 | 126 |
| MS.gene97583.t1 | AT1G77870 | 54.545 | 99 | 45 | 0 | 3 | 101 | 2 | 100 | 1.93e-36 | 121 |
| MS.gene97583.t1 | AT4G24990 | 55.435 | 92 | 39 | 1 | 5 | 96 | 4 | 93 | 2.34e-31 | 108 |
| MS.gene97583.t1 | AT4G24990 | 55.435 | 92 | 39 | 1 | 5 | 96 | 4 | 93 | 2.34e-31 | 108 |
| MS.gene97583.t1 | AT3G26980 | 52.174 | 92 | 42 | 1 | 4 | 95 | 3 | 92 | 1.28e-29 | 104 |
| MS.gene97583.t1 | AT5G15460 | 57.143 | 63 | 25 | 1 | 37 | 99 | 11 | 71 | 9.52e-18 | 73.2 |
Find 35 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCTTTCTTATCTGTATA+AGG | 0.267495 | 7.4:-87077042 | None:intergenic |
| CTCAAACTGCTCTTGGTTCC+CGG | 0.352665 | 7.4:-87074598 | None:intergenic |
| AGTGGCGGCAGGAAAACTTT+TGG | 0.362153 | 7.4:-87074658 | None:intergenic |
| CACATAAAGGGCTTTGGCTC+TGG | 0.376161 | 7.4:-87076087 | None:intergenic |
| TTGACGGATGGTTCTGATAT+CGG | 0.410506 | 7.4:+87074633 | MS.gene97583:CDS |
| ACTTGATCTCAAACTGCTCT+TGG | 0.425909 | 7.4:-87074605 | None:intergenic |
| GTACCAGGGGTATCACATAA+AGG | 0.432829 | 7.4:-87076100 | None:intergenic |
| CTTGGATCTCCGAGCATGAC+CGG | 0.442129 | 7.4:+87074579 | None:intergenic |
| TGAGATCAAGTTTAGGTTGA+CGG | 0.445292 | 7.4:+87074617 | MS.gene97583:CDS |
| AGCAGTTTGAGATCAAGTTT+AGG | 0.445361 | 7.4:+87074610 | MS.gene97583:CDS |
| ATTAGACCTTTGTCTGTAGT+AGG | 0.466209 | 7.4:-87076154 | None:intergenic |
| AAGAAAGTATTCTTGCTCAA+TGG | 0.479119 | 7.4:+87074697 | MS.gene97583:CDS |
| TACCAGGGGTATCACATAAA+GGG | 0.490754 | 7.4:-87076099 | None:intergenic |
| ATTCTTGCTCAATGGCCAAA+AGG | 0.495557 | 7.4:+87074705 | MS.gene97583:CDS |
| GGGTATCACATAAAGGGCTT+TGG | 0.495798 | 7.4:-87076093 | None:intergenic |
| TGCATTGTTGTAACAGTACC+AGG | 0.498824 | 7.4:-87076115 | None:intergenic |
| CCACCATGTCAATATGTGTC+GGG | 0.517045 | 7.4:-87077011 | None:intergenic |
| AGACCTTTGTCTGTAGTAGG+TGG | 0.540757 | 7.4:-87076151 | None:intergenic |
| GATTTGAAGTTAATCAGTGC+AGG | 0.542038 | 7.4:+87076028 | MS.gene97583:CDS |
| TTTCAATGTTGCAATACTAG+TGG | 0.550833 | 7.4:-87074676 | None:intergenic |
| TTGGATCTCCGAGCATGACC+GGG | 0.551174 | 7.4:+87074580 | None:intergenic |
| TCCACCATGTCAATATGTGT+CGG | 0.564197 | 7.4:-87077012 | None:intergenic |
| ATCAAGTTTAGGTTGACGGA+TGG | 0.578278 | 7.4:+87074621 | MS.gene97583:CDS |
| CAATGTTGCAATACTAGTGG+CGG | 0.583009 | 7.4:-87074673 | None:intergenic |
| GTTGCAATACTAGTGGCGGC+AGG | 0.593429 | 7.4:-87074669 | None:intergenic |
| TTGGAGAACAACAAAACAGT+CGG | 0.627089 | 7.4:+87076058 | MS.gene97583:CDS |
| AGCCCTTTATGTGATACCCC+TGG | 0.627346 | 7.4:+87076097 | MS.gene97583:CDS |
| AAGATAAGGAGAACGTGCCA+AGG | 0.632773 | 7.4:+87075996 | MS.gene97583:intron |
| CATTGTTGTAACAGTACCAG+GGG | 0.659317 | 7.4:-87076113 | None:intergenic |
| GATGCAGCACAGCACAAATG+TGG | 0.659452 | 7.4:+87077069 | MS.gene97583:CDS |
| CAACCACCTACTACAGACAA+AGG | 0.663273 | 7.4:+87076148 | MS.gene97583:CDS |
| TCACCCGACACATATTGACA+TGG | 0.671189 | 7.4:+87077008 | MS.gene97583:CDS |
| GCATTGTTGTAACAGTACCA+GGG | 0.672978 | 7.4:-87076114 | None:intergenic |
| CCCGACACATATTGACATGG+TGG | 0.693301 | 7.4:+87077011 | MS.gene97583:CDS |
| TACTGTTACAACAATGCATG+TGG | 0.701570 | 7.4:+87076120 | MS.gene97583:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAATAATTAGAACT+AGG | - | chr7.4:87076203-87076222 | None:intergenic | 10.0% |
| !! | CAACTAAAAATAAAAAAATA+GGG | + | chr7.4:87075193-87075212 | MS.gene97583:intron | 10.0% |
| !! | TCAACTAAAAATAAAAAAAT+AGG | + | chr7.4:87075192-87075211 | MS.gene97583:intron | 10.0% |
| !!! | GATAAATTATTATTTTTCAA+AGG | + | chr7.4:87076246-87076265 | MS.gene97583:intron | 10.0% |
| !!! | TCTTAAAAAATTTTATCAAA+GGG | - | chr7.4:87074951-87074970 | None:intergenic | 10.0% |
| !!! | TTTGATAAAATTTTTTAAGA+GGG | + | chr7.4:87074951-87074970 | MS.gene97583:intron | 10.0% |
| !!! | TTTTACATAAATTTTGTTAT+AGG | + | chr7.4:87076284-87076303 | MS.gene97583:intron | 10.0% |
| !! | CATGTATGAAATAAAATAAA+AGG | - | chr7.4:87075943-87075962 | None:intergenic | 15.0% |
| !! | TAATAAAAGAAAAACTGTTT+GGG | + | chr7.4:87075584-87075603 | MS.gene97583:intron | 15.0% |
| !!! | AAATCCATATTTTTAGTTTA+AGG | - | chr7.4:87075653-87075672 | None:intergenic | 15.0% |
| !!! | AATAATGGATAAAAAAAACA+AGG | - | chr7.4:87076397-87076416 | None:intergenic | 15.0% |
| !!! | AATATGGATTTCTTTTAATT+AGG | + | chr7.4:87075662-87075681 | MS.gene97583:intron | 15.0% |
| !!! | ATAATGGATAAAAAAAACAA+GGG | - | chr7.4:87076396-87076415 | None:intergenic | 15.0% |
| !!! | CTCTTAAAAAATTTTATCAA+AGG | - | chr7.4:87074952-87074971 | None:intergenic | 15.0% |
| !!! | CTTTGATAAAATTTTTTAAG+AGG | + | chr7.4:87074950-87074969 | MS.gene97583:intron | 15.0% |
| !!! | TTGATAAAATTTTTTAAGAG+GGG | + | chr7.4:87074952-87074971 | MS.gene97583:intron | 15.0% |
| !! | AAGAAACAAACTAGTAAATA+AGG | - | chr7.4:87075697-87075716 | None:intergenic | 20.0% |
| !! | AGAAACAAACTAGTAAATAA+GGG | - | chr7.4:87075696-87075715 | None:intergenic | 20.0% |
| !! | AGTAATAACTACATACTAAA+AGG | - | chr7.4:87075290-87075309 | None:intergenic | 20.0% |
| !! | AGTTCAATTTACACAAATAA+TGG | - | chr7.4:87076412-87076431 | None:intergenic | 20.0% |
| !! | CATAATTAATATGTCAATCA+AGG | - | chr7.4:87076334-87076353 | None:intergenic | 20.0% |
| !! | CTAATAAAAGAAAAACTGTT+TGG | + | chr7.4:87075583-87075602 | MS.gene97583:intron | 20.0% |
| !! | CTTCTTTCATTAAGTATATA+AGG | + | chr7.4:87075608-87075627 | MS.gene97583:intron | 20.0% |
| !! | TAATAATTAGAACTAGGATT+TGG | - | chr7.4:87076197-87076216 | None:intergenic | 20.0% |
| !! | TACAAGATAGTTAATGAAAA+TGG | + | chr7.4:87076650-87076669 | MS.gene97583:intron | 20.0% |
| !! | TATATAAAATGAGTAATCAG+TGG | - | chr7.4:87075088-87075107 | None:intergenic | 20.0% |
| !! | TGTTTAAAGAAGTAATATAC+TGG | - | chr7.4:87076826-87076845 | None:intergenic | 20.0% |
| !! | TTATAGAAATAAGCTGAAAA+AGG | - | chr7.4:87076626-87076645 | None:intergenic | 20.0% |
| !!! | AAAATTTTATCAAAGGGAAT+TGG | - | chr7.4:87074945-87074964 | None:intergenic | 20.0% |
| !!! | ACTGATTACTCATTTTATAT+AGG | + | chr7.4:87075087-87075106 | MS.gene97583:intron | 20.0% |
| !!! | ATTTTTATATTCTCTGTCAT+TGG | - | chr7.4:87075343-87075362 | None:intergenic | 20.0% |
| !!! | CAAACAGTTTTTCTTTTATT+AGG | - | chr7.4:87075585-87075604 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTATTAGGCAAA+TGG | - | chr7.4:87075578-87075597 | None:intergenic | 20.0% |
| ! | AAATTTAATGCTGTTCTGTT+TGG | + | chr7.4:87076955-87076974 | MS.gene97583:intron | 25.0% |
| ! | AAGGTAATGAACATATCATA+AGG | - | chr7.4:87076607-87076626 | None:intergenic | 25.0% |
| ! | AATAGATATAAGTACCATCA+GGG | + | chr7.4:87074861-87074880 | MS.gene97583:intron | 25.0% |
| ! | AATCTGAACATCACATTAAA+TGG | - | chr7.4:87075416-87075435 | None:intergenic | 25.0% |
| ! | AGAGCCTTAAACTAAAAATA+TGG | + | chr7.4:87075646-87075665 | MS.gene97583:intron | 25.0% |
| ! | ATTAAGCTAAAAAACCGAAA+AGG | - | chr7.4:87074765-87074784 | None:intergenic | 25.0% |
| ! | CAAAACACAACAAAAAGTTA+CGG | - | chr7.4:87075976-87075995 | None:intergenic | 25.0% |
| ! | CAAATCTGACATAGATAATT+TGG | - | chr7.4:87074790-87074809 | None:intergenic | 25.0% |
| ! | CTTTAAACATGTTTATACTC+TGG | + | chr7.4:87076837-87076856 | MS.gene97583:intron | 25.0% |
| ! | GAAACAAACTAGTAAATAAG+GGG | - | chr7.4:87075695-87075714 | None:intergenic | 25.0% |
| ! | TAATAGATATAAGTACCATC+AGG | + | chr7.4:87074860-87074879 | MS.gene97583:intron | 25.0% |
| ! | TTAAATTTAAGAAGCAAGCA+TGG | - | chr7.4:87076943-87076962 | None:intergenic | 25.0% |
| ! | TTAAGCTAAAAAACCGAAAA+GGG | - | chr7.4:87074764-87074783 | None:intergenic | 25.0% |
| !! | TTCAAATCTTTTATAGTCCT+TGG | - | chr7.4:87076016-87076035 | None:intergenic | 25.0% |
| !!! | AGTTATACACCTTTTTTGAT+TGG | + | chr7.4:87076517-87076536 | MS.gene97583:intron | 25.0% |
| !!! | TTTGTTGTGTTTTGAAGATA+AGG | + | chr7.4:87075982-87076001 | MS.gene97583:intron | 25.0% |
| AATCAGTGCAGGAAAAATAT+TGG | + | chr7.4:87076039-87076058 | MS.gene97583:CDS | 30.0% | |
| TAGATTTCCTTCAGAAATGA+AGG | + | chr7.4:87075531-87075550 | MS.gene97583:intron | 30.0% | |
| TCAAATGTGCCAATCAAAAA+AGG | - | chr7.4:87076529-87076548 | None:intergenic | 30.0% | |
| TGAACACAATGTTTCTTACA+CGG | - | chr7.4:87074835-87074854 | None:intergenic | 30.0% | |
| TGTAAGAAACATTGTGTTCA+TGG | + | chr7.4:87074835-87074854 | MS.gene97583:intron | 30.0% | |
| TTAATATGTCAATCAAGGAC+AGG | - | chr7.4:87076329-87076348 | None:intergenic | 30.0% | |
| TTTCAATGTTGCAATACTAG+TGG | - | chr7.4:87074679-87074698 | None:intergenic | 30.0% | |
| ! | AAAAAATAGGGAAAAGCATG+TGG | + | chr7.4:87075205-87075224 | MS.gene97583:intron | 30.0% |
| ! | ACACAAAACAACTAACCTTT+TGG | - | chr7.4:87074723-87074742 | None:intergenic | 30.0% |
| ! | AGATTATTTCTTCTTCATCC+AGG | - | chr7.4:87075267-87075286 | None:intergenic | 30.0% |
| ! | ATCGAGATTCTAGTAGTTTT+AGG | + | chr7.4:87075818-87075837 | MS.gene97583:intron | 30.0% |
| ! | ATTATTTCTTCTTCATCCAG+GGG | - | chr7.4:87075265-87075284 | None:intergenic | 30.0% |
| ! | ATTTTACTACAAGTCCTGTT+TGG | - | chr7.4:87076761-87076780 | None:intergenic | 30.0% |
| ! | GATTATTTCTTCTTCATCCA+GGG | - | chr7.4:87075266-87075285 | None:intergenic | 30.0% |
| ! | TTAGTTTAAGGCTCTATTCT+AGG | - | chr7.4:87075641-87075660 | None:intergenic | 30.0% |
| !! | AAGAAAGTATTCTTGCTCAA+TGG | + | chr7.4:87074697-87074716 | MS.gene97583:CDS | 30.0% |
| !!! | TAAAATTTTTTAAGAGGGGC+AGG | + | chr7.4:87074956-87074975 | MS.gene97583:intron | 30.0% |
| !!! | TTATTTTAGCAGTTCAACTG+TGG | + | chr7.4:87075792-87075811 | MS.gene97583:intron | 30.0% |
| AACCAGTTGAAACCTTGAAT+CGG | + | chr7.4:87075752-87075771 | MS.gene97583:intron | 35.0% | |
| ATATACTGGATATGTCAAGC+TGG | - | chr7.4:87076812-87076831 | None:intergenic | 35.0% | |
| ATTAGACCTTTGTCTGTAGT+AGG | - | chr7.4:87076157-87076176 | None:intergenic | 35.0% | |
| GAACACAATGTTTCTTACAC+GGG | - | chr7.4:87074834-87074853 | None:intergenic | 35.0% | |
| TACTGTTACAACAATGCATG+TGG | + | chr7.4:87076120-87076139 | MS.gene97583:CDS | 35.0% | |
| TGATGAGATCAGAGAAGAAA+AGG | + | chr7.4:87075375-87075394 | MS.gene97583:intron | 35.0% | |
| TGGAGCAATAGTTACATCTA+CGG | - | chr7.4:87075323-87075342 | None:intergenic | 35.0% | |
| TTCCTTGACAGCTAAGTTAT+AGG | - | chr7.4:87076366-87076385 | None:intergenic | 35.0% | |
| TTGGAGAACAACAAAACAGT+CGG | + | chr7.4:87076058-87076077 | MS.gene97583:CDS | 35.0% | |
| ! | AGAGTATCCTTCATTTCTGA+AGG | - | chr7.4:87075541-87075560 | None:intergenic | 35.0% |
| ! | AGCAGTTTGAGATCAAGTTT+AGG | + | chr7.4:87074610-87074629 | MS.gene97583:CDS | 35.0% |
| ! | CTACTGACATAAGCTTTTGA+GGG | + | chr7.4:87076555-87076574 | MS.gene97583:intron | 35.0% |
| ! | CTTAAGTTGCTTATCCAAAC+AGG | + | chr7.4:87076744-87076763 | MS.gene97583:intron | 35.0% |
| ! | GATTTGAAGTTAATCAGTGC+AGG | + | chr7.4:87076028-87076047 | MS.gene97583:CDS | 35.0% |
| ! | GCTGCTTTCTTATCTGTATA+AGG | - | chr7.4:87077045-87077064 | None:intergenic | 35.0% |
| ! | TATCTTTCAGAAGCATATGC+AGG | - | chr7.4:87075460-87075479 | None:intergenic | 35.0% |
| ! | TCTACTGACATAAGCTTTTG+AGG | + | chr7.4:87076554-87076573 | MS.gene97583:intron | 35.0% |
| ! | TTCTTTGTGCTTTCCCTTTT+CGG | + | chr7.4:87074748-87074767 | MS.gene97583:intron | 35.0% |
| !! | AATTGGACTTGTTATTGCAG+GGG | - | chr7.4:87074928-87074947 | None:intergenic | 35.0% |
| !! | CATGATCATTTGAGGCTTTT+GGG | + | chr7.4:87075021-87075040 | MS.gene97583:intron | 35.0% |
| !! | CGATGTTTTTAACACCGAAT+CGG | - | chr7.4:87075883-87075902 | None:intergenic | 35.0% |
| !! | GAATTGGACTTGTTATTGCA+GGG | - | chr7.4:87074929-87074948 | None:intergenic | 35.0% |
| !! | TGAGATCAAGTTTAGGTTGA+CGG | + | chr7.4:87074617-87074636 | MS.gene97583:CDS | 35.0% |
| !!! | GAGATTCTAGTAGTTTTAGG+TGG | + | chr7.4:87075821-87075840 | MS.gene97583:intron | 35.0% |
| !!! | GGTTTGATGTATTGGCTTTT+GGG | + | chr7.4:87075042-87075061 | MS.gene97583:intron | 35.0% |
| AATCGGACATCAAATCAGAG+CGG | - | chr7.4:87075866-87075885 | None:intergenic | 40.0% | |
| ACTTGATCTCAAACTGCTCT+TGG | - | chr7.4:87074608-87074627 | None:intergenic | 40.0% | |
| ATTCTTGCTCAATGGCCAAA+AGG | + | chr7.4:87074705-87074724 | MS.gene97583:CDS | 40.0% | |
| CAATGTTGCAATACTAGTGG+CGG | - | chr7.4:87074676-87074695 | None:intergenic | 40.0% | |
| CATTGTTGTAACAGTACCAG+GGG | - | chr7.4:87076116-87076135 | None:intergenic | 40.0% | |
| GAACTAGGATTTGGCATTGT+TGG | - | chr7.4:87076188-87076207 | None:intergenic | 40.0% | |
| GCATTGTTGTAACAGTACCA+GGG | - | chr7.4:87076117-87076136 | None:intergenic | 40.0% | |
| GTCCTATAACTTAGCTGTCA+AGG | + | chr7.4:87076361-87076380 | MS.gene97583:intron | 40.0% | |
| TAGGTGGTTGAACCATAATC+CGG | + | chr7.4:87075837-87075856 | MS.gene97583:intron | 40.0% | |
| TCCACCATGTCAATATGTGT+CGG | - | chr7.4:87077015-87077034 | None:intergenic | 40.0% | |
| TGCATTGTTGTAACAGTACC+AGG | - | chr7.4:87076118-87076137 | None:intergenic | 40.0% | |
| ! | ATTGGATGGATTCGAAAACC+GGG | + | chr7.4:87074986-87075005 | MS.gene97583:intron | 40.0% |
| ! | CTCTGATTTGATGTCCGATT+CGG | + | chr7.4:87075866-87075885 | MS.gene97583:intron | 40.0% |
| ! | GATTGGATGGATTCGAAAAC+CGG | + | chr7.4:87074985-87075004 | MS.gene97583:intron | 40.0% |
| !! | ATCAAGTTTAGGTTGACGGA+TGG | + | chr7.4:87074621-87074640 | MS.gene97583:CDS | 40.0% |
| !! | GCATGATCATTTGAGGCTTT+TGG | + | chr7.4:87075020-87075039 | MS.gene97583:intron | 40.0% |
| !! | GGAATTGGACTTGTTATTGC+AGG | - | chr7.4:87074930-87074949 | None:intergenic | 40.0% |
| !! | TACCAGGGGTATCACATAAA+GGG | - | chr7.4:87076102-87076121 | None:intergenic | 40.0% |
| !! | TTGACGGATGGTTCTGATAT+CGG | + | chr7.4:87074633-87074652 | MS.gene97583:CDS | 40.0% |
| !!! | AATTTTTTAAGAGGGGCAGG+TGG | + | chr7.4:87074959-87074978 | MS.gene97583:intron | 40.0% |
| !!! | GGCTTTTGGGTTTGATGTAT+TGG | + | chr7.4:87075034-87075053 | MS.gene97583:intron | 40.0% |
| !!! | GGGTTTGATGTATTGGCTTT+TGG | + | chr7.4:87075041-87075060 | MS.gene97583:intron | 40.0% |
| AACCATCAAGCAGGACAATG+AGG | - | chr7.4:87075731-87075750 | None:intergenic | 45.0% | |
| AACTGGTTGAACCATCAAGC+AGG | - | chr7.4:87075740-87075759 | None:intergenic | 45.0% | |
| AAGATAAGGAGAACGTGCCA+AGG | + | chr7.4:87075996-87076015 | MS.gene97583:intron | 45.0% | |
| ACACATATAGCACACACGCA+CGG | - | chr7.4:87075168-87075187 | None:intergenic | 45.0% | |
| AGACCTTTGTCTGTAGTAGG+TGG | - | chr7.4:87076154-87076173 | None:intergenic | 45.0% | |
| AGCAGGTGCATGATCATTTG+AGG | + | chr7.4:87075013-87075032 | MS.gene97583:intron | 45.0% | |
| ATTTCTTCTTCATCCAGGGG+CGG | - | chr7.4:87075262-87075281 | None:intergenic | 45.0% | |
| CAACCACCTACTACAGACAA+AGG | + | chr7.4:87076148-87076167 | MS.gene97583:CDS | 45.0% | |
| CCACCATGTCAATATGTGTC+GGG | - | chr7.4:87077014-87077033 | None:intergenic | 45.0% | |
| GATGCATGTTGGAGCTATGT+GGG | - | chr7.4:87075240-87075259 | None:intergenic | 45.0% | |
| GGGTATCACATAAAGGGCTT+TGG | - | chr7.4:87076096-87076115 | None:intergenic | 45.0% | |
| TCACCCGACACATATTGACA+TGG | + | chr7.4:87077008-87077027 | MS.gene97583:CDS | 45.0% | |
| TTACAGTCCTAGCTTCACAG+AGG | - | chr7.4:87076456-87076475 | None:intergenic | 45.0% | |
| TTCCTCATTGTCCTGCTTGA+TGG | + | chr7.4:87075726-87075745 | MS.gene97583:intron | 45.0% | |
| !! | CTATAGTGAACGCCGATTCA+AGG | - | chr7.4:87075767-87075786 | None:intergenic | 45.0% |
| !! | GTACCAGGGGTATCACATAA+AGG | - | chr7.4:87076103-87076122 | None:intergenic | 45.0% |
| AGCCCTTTATGTGATACCCC+TGG | + | chr7.4:87076097-87076116 | MS.gene97583:CDS | 50.0% | |
| ATCATGCACCTGCTATCACC+CGG | - | chr7.4:87075007-87075026 | None:intergenic | 50.0% | |
| CATCAAATCAGAGCGGCTTC+CGG | - | chr7.4:87075859-87075878 | None:intergenic | 50.0% | |
| CCCGACACATATTGACATGG+TGG | + | chr7.4:87077011-87077030 | MS.gene97583:CDS | 50.0% | |
| CTCAAACTGCTCTTGGTTCC+CGG | - | chr7.4:87074601-87074620 | None:intergenic | 50.0% | |
| GATGCAGCACAGCACAAATG+TGG | + | chr7.4:87077069-87077088 | MS.gene97583:CDS | 50.0% | |
| GGATGCATGTTGGAGCTATG+TGG | - | chr7.4:87075241-87075260 | None:intergenic | 50.0% | |
| GTAGTCTCCTCTGTGAAGCT+AGG | + | chr7.4:87076446-87076465 | MS.gene97583:intron | 50.0% | |
| TTCGAAAACCGGGTGATAGC+AGG | + | chr7.4:87074996-87075015 | MS.gene97583:intron | 50.0% | |
| ! | AGTGGCGGCAGGAAAACTTT+TGG | - | chr7.4:87074661-87074680 | None:intergenic | 50.0% |
| ! | CACATAAAGGGCTTTGGCTC+TGG | - | chr7.4:87076090-87076109 | None:intergenic | 50.0% |
| ! | GTGGCGGCAGGAAAACTTTT+GGG | - | chr7.4:87074660-87074679 | None:intergenic | 50.0% |
| ! | TGGCGGCAGGAAAACTTTTG+GGG | - | chr7.4:87074659-87074678 | None:intergenic | 50.0% |
| !! | CGCCGATTCAAGGTTTCAAC+TGG | - | chr7.4:87075757-87075776 | None:intergenic | 50.0% |
| AGAGGGGCAGGTGGTTTGAT+TGG | + | chr7.4:87074968-87074987 | MS.gene97583:intron | 55.0% | |
| GGGCAGGTGGTTTGATTGGA+TGG | + | chr7.4:87074972-87074991 | MS.gene97583:intron | 55.0% | |
| GTTGCAATACTAGTGGCGGC+AGG | - | chr7.4:87074672-87074691 | None:intergenic | 55.0% | |
| TCAGAGCGGCTTCCGGATTA+TGG | - | chr7.4:87075852-87075871 | None:intergenic | 55.0% | |
| ATCCAGGGGCGGATGCATGT+TGG | - | chr7.4:87075251-87075270 | None:intergenic | 60.0% | |
| CAGGGTCTAGCGCAAGTGGT+TGG | + | chr7.4:87074879-87074898 | MS.gene97583:intron | 60.0% | |
| CCACTTGCGCTAGACCCTGA+TGG | - | chr7.4:87074878-87074897 | None:intergenic | 60.0% | |
| CCATCAGGGTCTAGCGCAAG+TGG | + | chr7.4:87074875-87074894 | MS.gene97583:intron | 60.0% | |
| TAGCACACACGCACGGTAGC+AGG | - | chr7.4:87075161-87075180 | None:intergenic | 60.0% | |
| ! | AGCGCAAGTGGTTGGTGTGC+AGG | + | chr7.4:87074887-87074906 | MS.gene97583:intron | 60.0% |
| ! | CGCAAGTGGTTGGTGTGCAG+GGG | + | chr7.4:87074889-87074908 | MS.gene97583:intron | 60.0% |
| ! | GCGCAAGTGGTTGGTGTGCA+GGG | + | chr7.4:87074888-87074907 | MS.gene97583:intron | 60.0% |
| CTCCAACATGCATCCGCCCC+TGG | + | chr7.4:87075246-87075265 | MS.gene97583:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 87074594 | 87077107 | 87074594 | ID=MS.gene97583 |
| chr7.4 | mRNA | 87074594 | 87077107 | 87074594 | ID=MS.gene97583.t1;Parent=MS.gene97583 |
| chr7.4 | exon | 87074594 | 87074726 | 87074594 | ID=MS.gene97583.t1.exon1;Parent=MS.gene97583.t1 |
| chr7.4 | CDS | 87074594 | 87074726 | 87074594 | ID=cds.MS.gene97583.t1;Parent=MS.gene97583.t1 |
| chr7.4 | exon | 87075999 | 87076169 | 87075999 | ID=MS.gene97583.t1.exon2;Parent=MS.gene97583.t1 |
| chr7.4 | CDS | 87075999 | 87076169 | 87075999 | ID=cds.MS.gene97583.t1;Parent=MS.gene97583.t1 |
| chr7.4 | exon | 87076998 | 87077107 | 87076998 | ID=MS.gene97583.t1.exon3;Parent=MS.gene97583.t1 |
| chr7.4 | CDS | 87076998 | 87077107 | 87076998 | ID=cds.MS.gene97583.t1;Parent=MS.gene97583.t1 |
| Gene Sequence |
| Protein sequence |
