Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45917.t1 | PNY17342.1 | 85.7 | 217 | 31 | 0 | 1 | 217 | 78 | 294 | 7.40E-108 | 401 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45917.t1 | Q9LSS3 | 53.9 | 219 | 93 | 3 | 1 | 217 | 19 | 231 | 7.1e-59 | 229.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45917.t1 | A0A2K3PPX2 | 85.7 | 217 | 31 | 0 | 1 | 217 | 78 | 294 | 5.3e-108 | 401.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene45917 | 0.80184 | 7.45E-49 | -1.69E-46 |
| MS.gene049159 | MS.gene45917 | 0.805177 | 1.51E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene45917 | 0.80063 | 1.32E-48 | -1.69E-46 |
| MS.gene052863 | MS.gene45917 | 0.806084 | 9.77E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene45917 | 0.835662 | 1.47E-56 | -1.69E-46 |
| MS.gene054472 | MS.gene45917 | 0.831984 | 1.22E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene45917 | 0.814289 | 1.66E-51 | -1.69E-46 |
| MS.gene056760 | MS.gene45917 | 0.80774 | 4.36E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene45917 | 0.804112 | 2.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45917.t1 | MTR_7g092500 | 86.758 | 219 | 27 | 1 | 1 | 217 | 25 | 243 | 1.46e-137 | 395 |
| MS.gene45917.t1 | MTR_7g092500 | 85.567 | 194 | 25 | 2 | 257 | 447 | 53 | 246 | 3.75e-115 | 338 |
| MS.gene45917.t1 | MTR_0262s0030 | 89.375 | 160 | 17 | 0 | 1 | 160 | 25 | 184 | 1.52e-102 | 303 |
| MS.gene45917.t1 | MTR_0262s0030 | 92.481 | 133 | 9 | 1 | 257 | 388 | 53 | 185 | 1.16e-82 | 253 |
| MS.gene45917.t1 | MTR_5g031400 | 57.343 | 143 | 25 | 2 | 75 | 217 | 48 | 154 | 1.50e-44 | 153 |
| MS.gene45917.t1 | MTR_5g031400 | 56.849 | 146 | 26 | 3 | 303 | 447 | 48 | 157 | 1.42e-40 | 142 |
| MS.gene45917.t1 | MTR_4g119190 | 68.750 | 48 | 15 | 0 | 55 | 102 | 19 | 66 | 1.35e-14 | 68.6 |
| MS.gene45917.t1 | MTR_4g119190 | 70.833 | 48 | 13 | 1 | 283 | 329 | 19 | 66 | 3.01e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45917.t1 | AT5G60230 | 53.881 | 219 | 93 | 3 | 1 | 217 | 24 | 236 | 1.80e-70 | 224 |
| MS.gene45917.t1 | AT5G60230 | 56.842 | 190 | 75 | 2 | 257 | 444 | 52 | 236 | 2.61e-64 | 208 |
| MS.gene45917.t1 | AT5G60230 | 53.881 | 219 | 93 | 3 | 1 | 217 | 19 | 231 | 2.01e-70 | 223 |
| MS.gene45917.t1 | AT5G60230 | 54.774 | 199 | 83 | 2 | 248 | 444 | 38 | 231 | 2.77e-64 | 207 |
| MS.gene45917.t1 | AT3G45590 | 52.232 | 224 | 98 | 4 | 1 | 221 | 19 | 236 | 3.38e-70 | 223 |
| MS.gene45917.t1 | AT3G45590 | 51.724 | 203 | 92 | 2 | 244 | 444 | 34 | 232 | 1.66e-60 | 197 |
| MS.gene45917.t1 | AT3G45590 | 52.232 | 224 | 98 | 4 | 1 | 221 | 19 | 236 | 3.38e-70 | 223 |
| MS.gene45917.t1 | AT3G45590 | 51.724 | 203 | 92 | 2 | 244 | 444 | 34 | 232 | 1.66e-60 | 197 |
| MS.gene45917.t1 | AT3G45577 | 48.193 | 83 | 43 | 0 | 260 | 342 | 36 | 118 | 3.57e-17 | 77.8 |
| MS.gene45917.t1 | AT3G45577 | 47.423 | 97 | 47 | 2 | 19 | 115 | 26 | 118 | 4.99e-17 | 77.4 |
Find 85 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAACTCTTCATCATTTA+AGG | 0.063723 | 7.2:-45686852 | None:intergenic |
| ACGCCACAACTCTTCATTTA+AGG | 0.137177 | 7.2:-45688793 | None:intergenic |
| TTGAAATGCCTCAAGATTAA+TGG | 0.229021 | 7.2:+45686812 | MS.gene45917:CDS |
| ACAAGGGAATGTTTCTTTCT+TGG | 0.237646 | 7.2:-45686888 | None:intergenic |
| GTTAACGTACAAACCTAATA+AGG | 0.279589 | 7.2:-45687134 | None:intergenic |
| CATTGCACAACTCGACTTCT+TGG | 0.283326 | 7.2:+45687097 | MS.gene45917:CDS |
| CTTTGCACAACTCGACTTCT+TGG | 0.291537 | 7.2:+45689035 | MS.gene45917:CDS |
| GAATAAGCCTTGTAGAAATA+AGG | 0.297148 | 7.2:-45688843 | None:intergenic |
| GCTCGGGTGCATTCTGAGTA+TGG | 0.321264 | 7.2:+45687007 | MS.gene45917:CDS |
| GCTCGGGTGCATTCTGAGTA+TGG | 0.321264 | 7.2:+45688945 | MS.gene45917:CDS |
| ATAAGGGAATGCTTCTTTCT+TGG | 0.327789 | 7.2:-45688826 | None:intergenic |
| CGCCACAACTCTTCATTTAA+GGG | 0.336160 | 7.2:-45688792 | None:intergenic |
| TAAGGGAATGCTTCTTTCTT+GGG | 0.350469 | 7.2:-45688825 | None:intergenic |
| TAAATAGAAGATTGAGAGTA+TGG | 0.364355 | 7.2:+45689003 | MS.gene45917:CDS |
| CACAACTCTTCATCATTTAA+GGG | 0.377780 | 7.2:-45686851 | None:intergenic |
| GATCTCTCACGACATTGTTC+TGG | 0.391643 | 7.2:-45687235 | None:intergenic |
| ATTAATCTTGAGGCATTTCA+AGG | 0.418645 | 7.2:-45686810 | None:intergenic |
| GTGAAGTCAGGGGCTCAGTA+TGG | 0.424296 | 7.2:+45686953 | MS.gene45917:CDS |
| AATAAGCCTTGTAGAAATAA+GGG | 0.428978 | 7.2:-45688842 | None:intergenic |
| TTGCTTAATAAAGCGTGCTT+TGG | 0.429218 | 7.2:+45688651 | MS.gene45917:CDS |
| GTGAGGTCAGGGTCTCAGTA+TGG | 0.430753 | 7.2:+45688891 | MS.gene45917:CDS |
| ATTAATGACGGTGCTGATAC+TGG | 0.437232 | 7.2:+45688768 | MS.gene45917:CDS |
| ACATCCATCTCTCACATTCC+CGG | 0.443650 | 7.2:+45687478 | MS.gene45917:CDS |
| GTTAACGTACAAAACTAGTA+AGG | 0.444033 | 7.2:-45689072 | None:intergenic |
| AAAGACTGGGTAGTGAAGTC+AGG | 0.444328 | 7.2:+45686941 | MS.gene45917:CDS |
| TTGCTTGATAAAGCATGCTT+TGG | 0.455248 | 7.2:+45686710 | MS.gene45917:CDS |
| AAGTACGCACAATCTCTAGA+TGG | 0.473667 | 7.2:+45687209 | MS.gene45917:CDS |
| CCATTGCTCTAGACTCCGTC+TGG | 0.479107 | 7.2:-45689162 | None:intergenic |
| AACATTCCCTTGTTTCTACA+AGG | 0.481450 | 7.2:+45686898 | MS.gene45917:CDS |
| TATTGTTTATCGCCATCATC+CGG | 0.483793 | 7.2:+45686985 | MS.gene45917:CDS |
| TATTGTTTATCGCCATCATC+CGG | 0.483793 | 7.2:+45688923 | MS.gene45917:CDS |
| CATCTTCAACAGGGGAGAGC+GGG | 0.487039 | 7.2:+45687365 | MS.gene45917:intron |
| GCTACTTTGCTTAGTGGCGG+CGG | 0.487147 | 7.2:+45687418 | MS.gene45917:CDS |
| TAGATGGAAGATTGAGAGAA+TGG | 0.490141 | 7.2:+45687065 | MS.gene45917:CDS |
| AATGCACCCGAGCCGGATGA+TGG | 0.494307 | 7.2:-45686997 | None:intergenic |
| AATGCACCCGAGCCGGATGA+TGG | 0.494307 | 7.2:-45688935 | None:intergenic |
| GACAATGATGGTGATCTAGA+TGG | 0.497076 | 7.2:+45687049 | MS.gene45917:CDS |
| TAGTTGACAAGGATATGTAT+TGG | 0.499569 | 7.2:+45686747 | MS.gene45917:CDS |
| TAGTTGACAAGGATATGTAT+TGG | 0.499569 | 7.2:+45688688 | MS.gene45917:CDS |
| AGCATTCCCTTATTTCTACA+AGG | 0.509569 | 7.2:+45688836 | MS.gene45917:CDS |
| GGCGGAGATAGAACTATCAT+TGG | 0.511446 | 7.2:+45687436 | MS.gene45917:CDS |
| CAACAGGGGAGAGCGGGAAA+AGG | 0.513805 | 7.2:+45687371 | MS.gene45917:intron |
| GGAGATTGTGCGTTCTTCGA+TGG | 0.514064 | 7.2:-45689141 | None:intergenic |
| CAATAAGCCTTGTAGAAACA+AGG | 0.516266 | 7.2:-45686905 | None:intergenic |
| TTATCGCCATCATCCGGCTC+GGG | 0.524109 | 7.2:+45686991 | MS.gene45917:CDS |
| TTATCGCCATCATCCGGCTC+GGG | 0.524109 | 7.2:+45688929 | MS.gene45917:CDS |
| TACTCAGAATGCACCCGAGC+CGG | 0.524568 | 7.2:-45687004 | None:intergenic |
| TACTCAGAATGCACCCGAGC+CGG | 0.524568 | 7.2:-45688942 | None:intergenic |
| TTTATCGCCATCATCCGGCT+CGG | 0.534738 | 7.2:+45686990 | MS.gene45917:CDS |
| TTTATCGCCATCATCCGGCT+CGG | 0.534738 | 7.2:+45688928 | MS.gene45917:CDS |
| TGTGATACAATCTTTGACAT+GGG | 0.538484 | 7.2:-45686599 | None:intergenic |
| GTATAGTTTGTCAAACATAA+CGG | 0.545435 | 7.2:-45687181 | None:intergenic |
| GGCATTTCAAGGAATAACAT+AGG | 0.552981 | 7.2:-45686799 | None:intergenic |
| TTGTGATACAATCTTTGACA+TGG | 0.553740 | 7.2:-45686600 | None:intergenic |
| TTAGTTCAATCAAATACTTG+TGG | 0.557545 | 7.2:+45686635 | MS.gene45917:CDS |
| TAGATAGAATGCTTCCTCCA+TGG | 0.562337 | 7.2:-45688721 | None:intergenic |
| TCCTTGTCAACTATCCTCAC+AGG | 0.567073 | 7.2:-45686737 | None:intergenic |
| TCCTTGTCAACTATCCTCAC+AGG | 0.567073 | 7.2:-45688678 | None:intergenic |
| CAGCACCGTCATTAATCTTG+AGG | 0.574856 | 7.2:-45688761 | None:intergenic |
| AAGACTGGGTAGTGAAGTCA+GGG | 0.585343 | 7.2:+45686942 | MS.gene45917:CDS |
| TAGGTAGAATGCTTCCTCCT+CGG | 0.589972 | 7.2:-45686780 | None:intergenic |
| GTATTGGTTTCAATTAACCA+TGG | 0.594762 | 7.2:+45688704 | MS.gene45917:CDS |
| AAAACTGGGTAGTGAGGTCA+GGG | 0.603360 | 7.2:+45688880 | MS.gene45917:CDS |
| GAGCACCTCCATTAATCTTG+AGG | 0.609670 | 7.2:-45686820 | None:intergenic |
| GCATCTTCAACAGGGGAGAG+CGG | 0.616909 | 7.2:+45687364 | MS.gene45917:intron |
| GTTCTATCACATGACAATGA+TGG | 0.620867 | 7.2:+45687037 | MS.gene45917:CDS |
| GTTCTATCACATGACAATGA+TGG | 0.620867 | 7.2:+45688975 | MS.gene45917:CDS |
| ACCTGTGAGGATAGTTGACA+AGG | 0.621958 | 7.2:+45686736 | MS.gene45917:CDS |
| GGGAAAAGGAAAGAAGCTAA+AGG | 0.622115 | 7.2:+45687385 | MS.gene45917:CDS |
| CCAGACGGAGTCTAGAGCAA+TGG | 0.624067 | 7.2:+45689162 | MS.gene45917:CDS |
| GGGGCTACTTTGCTTAGTGG+CGG | 0.630831 | 7.2:+45687415 | MS.gene45917:CDS |
| AAATGCCTCAAGATTAATGA+CGG | 0.637181 | 7.2:+45688756 | MS.gene45917:CDS |
| GTCCCTTAAATGAAGAGTTG+TGG | 0.637860 | 7.2:+45688790 | MS.gene45917:CDS |
| AATAAGCCTTGTAGAAACAA+GGG | 0.638392 | 7.2:-45686904 | None:intergenic |
| ACCTGTGAGGATAGTTGACA+AGG | 0.642072 | 7.2:+45688677 | MS.gene45917:CDS |
| TTGGTTTCAGTTAACCGAGG+AGG | 0.658202 | 7.2:+45686766 | MS.gene45917:CDS |
| CGTGCTTTGGTCGACCTGTG+AGG | 0.662108 | 7.2:+45688664 | MS.gene45917:CDS |
| TGTACCGGGAATGTGAGAGA+TGG | 0.664950 | 7.2:-45687482 | None:intergenic |
| AAATGCCTCAAGATTAATGG+AGG | 0.668756 | 7.2:+45686815 | MS.gene45917:CDS |
| CATGCTTTGGTCAACCTGTG+AGG | 0.682966 | 7.2:+45686723 | MS.gene45917:CDS |
| GTATTGGTTTCAGTTAACCG+AGG | 0.685014 | 7.2:+45686763 | MS.gene45917:CDS |
| TTGGTTTCAATTAACCATGG+AGG | 0.690068 | 7.2:+45688707 | MS.gene45917:CDS |
| CCTTAAATGATGAAGAGTTG+TGG | 0.708210 | 7.2:+45686852 | MS.gene45917:CDS |
| AAGAACGCACAATCTCCAGA+CGG | 0.725163 | 7.2:+45689147 | MS.gene45917:CDS |
| AGACTGGGTAGTGAAGTCAG+GGG | 0.803024 | 7.2:+45686943 | MS.gene45917:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACTTATATTTAATGAAA+CGG | - | chr7.2:45688015-45688034 | None:intergenic | 10.0% |
| !!! | TTATTTTCTTTGTTTTTTTA+AGG | + | chr7.2:45687968-45687987 | MS.gene45917:intron | 10.0% |
| !! | AGCCAAATAATATATTAATA+CGG | - | chr7.2:45687806-45687825 | None:intergenic | 15.0% |
| !! | ATATACCCTTAATATATAAA+GGG | - | chr7.2:45688265-45688284 | None:intergenic | 15.0% |
| !! | TACCGTATTAATATATTATT+TGG | + | chr7.2:45687801-45687820 | MS.gene45917:intron | 15.0% |
| !! | TATATACCCTTAATATATAA+AGG | - | chr7.2:45688266-45688285 | None:intergenic | 15.0% |
| !! | TTTATAAAAGTTGAGTTATA+CGG | - | chr7.2:45687932-45687951 | None:intergenic | 15.0% |
| !!! | ATTGTTTGACTTTTTTTATA+AGG | + | chr7.2:45688444-45688463 | MS.gene45917:intron | 15.0% |
| !!! | ATTTTTTTCTTCTTTATGTT+TGG | + | chr7.2:45688092-45688111 | MS.gene45917:intron | 15.0% |
| !! | AAAAGATGCAAAATCAAAAA+AGG | + | chr7.2:45688491-45688510 | MS.gene45917:intron | 20.0% |
| !! | ATACTTCTAATACAAATAGA+TGG | - | chr7.2:45687533-45687552 | None:intergenic | 20.0% |
| !! | TATCTCCCTTTATATATTAA+GGG | + | chr7.2:45688257-45688276 | MS.gene45917:intron | 20.0% |
| !! | TTATCTCCCTTTATATATTA+AGG | + | chr7.2:45688256-45688275 | MS.gene45917:intron | 20.0% |
| !!! | AAGTTTTTTTTTTCCTTTTG+GGG | - | chr7.2:45687753-45687772 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTATAAGGTCAAA+TGG | + | chr7.2:45688452-45688471 | MS.gene45917:intron | 20.0% |
| !!! | CAAGTTTTTTTTTTCCTTTT+GGG | - | chr7.2:45687754-45687773 | None:intergenic | 20.0% |
| !!! | TCAAGTTTTTTTTTTCCTTT+TGG | - | chr7.2:45687755-45687774 | None:intergenic | 20.0% |
| ! | AAAGAAGCTAAAGGAAAAAA+GGG | + | chr7.2:45687394-45687413 | MS.gene45917:CDS | 25.0% |
| ! | GAAGTCAAATTTATCCATAA+TGG | - | chr7.2:45687901-45687920 | None:intergenic | 25.0% |
| ! | GATTGAGCTTTACTAAATAA+AGG | + | chr7.2:45688404-45688423 | MS.gene45917:intron | 25.0% |
| ! | TAAATAGAAGATTGAGAGTA+TGG | + | chr7.2:45689003-45689022 | MS.gene45917:CDS | 25.0% |
| ! | TTAATCATAAACATAGACAG+CGG | - | chr7.2:45688146-45688165 | None:intergenic | 25.0% |
| ! | TTAGTTCAATCAAATACTTG+TGG | + | chr7.2:45686635-45686654 | MS.gene45917:CDS | 25.0% |
| ! | TTTGAACCAACAAAATTGTT+TGG | - | chr7.2:45687832-45687851 | None:intergenic | 25.0% |
| !! | AATAAGCCTTGTAGAAATAA+GGG | - | chr7.2:45688845-45688864 | None:intergenic | 25.0% |
| !! | ATTTAGTTTAGTGTCCATTA+TGG | + | chr7.2:45687884-45687903 | MS.gene45917:intron | 25.0% |
| !! | GTATAGTTTGTCAAACATAA+CGG | - | chr7.2:45687184-45687203 | None:intergenic | 25.0% |
| !! | GTTTCGTTTCTTTCAAATTT+TGG | + | chr7.2:45688230-45688249 | MS.gene45917:intron | 25.0% |
| !! | GTTTTGTACGTTAACAAAAA+TGG | + | chr7.2:45689080-45689099 | MS.gene45917:CDS | 25.0% |
| !!! | GCACAATTTTTTTGTCAATA+CGG | - | chr7.2:45687260-45687279 | None:intergenic | 25.0% |
| AAATGCCTCAAGATTAATGA+CGG | + | chr7.2:45688756-45688775 | MS.gene45917:CDS | 30.0% | |
| AAGAAGCTAAAGGAAAAAAG+GGG | + | chr7.2:45687395-45687414 | MS.gene45917:CDS | 30.0% | |
| AGAAAAAGAGAAGATTGTAC+CGG | - | chr7.2:45687500-45687519 | None:intergenic | 30.0% | |
| AGGTCAAATTATGAAGAGTA+TGG | - | chr7.2:45687631-45687650 | None:intergenic | 30.0% | |
| AGTGTTGCAAAAACCTTATT+AGG | + | chr7.2:45687121-45687140 | MS.gene45917:CDS | 30.0% | |
| ATTCAATTGTTTCGCTCTTA+TGG | + | chr7.2:45688166-45688185 | MS.gene45917:intron | 30.0% | |
| CACAACTCTTCATCATTTAA+GGG | - | chr7.2:45686854-45686873 | None:intergenic | 30.0% | |
| CCAAATTAATCAAGACACAA+AGG | - | chr7.2:45688357-45688376 | None:intergenic | 30.0% | |
| CCTTTGTGTCTTGATTAATT+TGG | + | chr7.2:45688354-45688373 | MS.gene45917:intron | 30.0% | |
| GAAAGAAGCTAAAGGAAAAA+AGG | + | chr7.2:45687393-45687412 | MS.gene45917:CDS | 30.0% | |
| GGTTTGTACGTTAACAAAAA+TGG | + | chr7.2:45687142-45687161 | MS.gene45917:CDS | 30.0% | |
| GTTAACGTACAAAACTAGTA+AGG | - | chr7.2:45689075-45689094 | None:intergenic | 30.0% | |
| GTTAACGTACAAACCTAATA+AGG | - | chr7.2:45687137-45687156 | None:intergenic | 30.0% | |
| TAGTTGACAAGGATATGTAT+TGG | + | chr7.2:45686747-45686766 | MS.gene45917:CDS | 30.0% | |
| TGAGCTTTACTAAATAAAGG+TGG | + | chr7.2:45688407-45688426 | MS.gene45917:intron | 30.0% | |
| TGTGATACAATCTTTGACAT+GGG | - | chr7.2:45686602-45686621 | None:intergenic | 30.0% | |
| TTGAAATGCCTCAAGATTAA+TGG | + | chr7.2:45686812-45686831 | MS.gene45917:CDS | 30.0% | |
| TTGTGATACAATCTTTGACA+TGG | - | chr7.2:45686603-45686622 | None:intergenic | 30.0% | |
| ! | AAGCTATCACAATTTTTACG+AGG | - | chr7.2:45688121-45688140 | None:intergenic | 30.0% |
| ! | AATAAGCCTTGTAGAAACAA+GGG | - | chr7.2:45686907-45686926 | None:intergenic | 30.0% |
| ! | AGCTATCACAATTTTTACGA+GGG | - | chr7.2:45688120-45688139 | None:intergenic | 30.0% |
| ! | ATTAATCTTGAGGCATTTCA+AGG | - | chr7.2:45686813-45686832 | None:intergenic | 30.0% |
| ! | CACATAAGAATTACGGATTA+GGG | - | chr7.2:45688333-45688352 | None:intergenic | 30.0% |
| ! | GAATAAGCCTTGTAGAAATA+AGG | - | chr7.2:45688846-45688865 | None:intergenic | 30.0% |
| ! | TCATTTTCGAATGAAAGACT+GGG | + | chr7.2:45686928-45686947 | MS.gene45917:CDS | 30.0% |
| ! | TTACTAAATAAAGGTGGACT+TGG | + | chr7.2:45688413-45688432 | MS.gene45917:intron | 30.0% |
| !! | CTCATTTTTGTCTATGTTCA+GGG | + | chr7.2:45687691-45687710 | MS.gene45917:intron | 30.0% |
| !! | GTATTGGTTTCAATTAACCA+TGG | + | chr7.2:45688704-45688723 | MS.gene45917:CDS | 30.0% |
| !! | TCATTTTTGTCTATGTTCAG+GGG | + | chr7.2:45687692-45687711 | MS.gene45917:intron | 30.0% |
| !! | TCTCATTTTTGTCTATGTTC+AGG | + | chr7.2:45687690-45687709 | MS.gene45917:intron | 30.0% |
| AAATGCCTCAAGATTAATGG+AGG | + | chr7.2:45686815-45686834 | MS.gene45917:CDS | 35.0% | |
| AATGTCTCTAATCAGTGATC+AGG | - | chr7.2:45687651-45687670 | None:intergenic | 35.0% | |
| ACAAGGGAATGTTTCTTTCT+TGG | - | chr7.2:45686891-45686910 | None:intergenic | 35.0% | |
| AGAAGCTAAAGGAAAAAAGG+GGG | + | chr7.2:45687396-45687415 | MS.gene45917:CDS | 35.0% | |
| ATAAGGGAATGCTTCTTTCT+TGG | - | chr7.2:45688829-45688848 | None:intergenic | 35.0% | |
| ATCAAACACTTTACGTGCAA+AGG | - | chr7.2:45687561-45687580 | None:intergenic | 35.0% | |
| CAAAGGCCACATAAGAATTA+CGG | - | chr7.2:45688340-45688359 | None:intergenic | 35.0% | |
| CCACAACTCTTCATCATTTA+AGG | - | chr7.2:45686855-45686874 | None:intergenic | 35.0% | |
| CCACATAAGAATTACGGATT+AGG | - | chr7.2:45688334-45688353 | None:intergenic | 35.0% | |
| CCTAATCCGTAATTCTTATG+TGG | + | chr7.2:45688331-45688350 | MS.gene45917:intron | 35.0% | |
| CCTTAAATGATGAAGAGTTG+TGG | + | chr7.2:45686852-45686871 | MS.gene45917:CDS | 35.0% | |
| GAAAAAGAGAAGATTGTACC+GGG | - | chr7.2:45687499-45687518 | None:intergenic | 35.0% | |
| GAAACGAAACAGAGAAAAGT+TGG | - | chr7.2:45688220-45688239 | None:intergenic | 35.0% | |
| GCAGAGGTTTCACAAATTTA+GGG | - | chr7.2:45687321-45687340 | None:intergenic | 35.0% | |
| GGCATTTCAAGGAATAACAT+AGG | - | chr7.2:45686802-45686821 | None:intergenic | 35.0% | |
| GTTCTATCACATGACAATGA+TGG | + | chr7.2:45687037-45687056 | MS.gene45917:CDS | 35.0% | |
| TAAGGGAATGCTTCTTTCTT+GGG | - | chr7.2:45688828-45688847 | None:intergenic | 35.0% | |
| TAGATGGAAGATTGAGAGAA+TGG | + | chr7.2:45687065-45687084 | MS.gene45917:CDS | 35.0% | |
| TATTGTTTATCGCCATCATC+CGG | + | chr7.2:45686985-45687004 | MS.gene45917:CDS | 35.0% | |
| TCACCTTCGAATGAAAAACT+GGG | + | chr7.2:45688866-45688885 | MS.gene45917:CDS | 35.0% | |
| TTGCTTAATAAAGCGTGCTT+TGG | + | chr7.2:45688651-45688670 | MS.gene45917:CDS | 35.0% | |
| TTGCTTGATAAAGCATGCTT+TGG | + | chr7.2:45686710-45686729 | MS.gene45917:CDS | 35.0% | |
| TTGGTTTCAATTAACCATGG+AGG | + | chr7.2:45688707-45688726 | MS.gene45917:CDS | 35.0% | |
| ! | AACAGAGAAAAGTTGGTTGA+TGG | - | chr7.2:45688213-45688232 | None:intergenic | 35.0% |
| ! | CAATAAGCCTTGTAGAAACA+AGG | - | chr7.2:45686908-45686927 | None:intergenic | 35.0% |
| ! | CTATCACAATTTTTACGAGG+GGG | - | chr7.2:45688118-45688137 | None:intergenic | 35.0% |
| ! | GCTACTCCAAACAATTTTGT+TGG | + | chr7.2:45687823-45687842 | MS.gene45917:intron | 35.0% |
| ! | GCTATCACAATTTTTACGAG+GGG | - | chr7.2:45688119-45688138 | None:intergenic | 35.0% |
| !! | AACATTCCCTTGTTTCTACA+AGG | + | chr7.2:45686898-45686917 | MS.gene45917:CDS | 35.0% |
| !! | AGCATTCCCTTATTTCTACA+AGG | + | chr7.2:45688836-45688855 | MS.gene45917:CDS | 35.0% |
| !! | GTCATTTTCGAATGAAAGAC+TGG | + | chr7.2:45686927-45686946 | MS.gene45917:CDS | 35.0% |
| AAGTACGCACAATCTCTAGA+TGG | + | chr7.2:45687209-45687228 | MS.gene45917:CDS | 40.0% | |
| ACAAATTTAGGGAAACGCCT+GGG | - | chr7.2:45687310-45687329 | None:intergenic | 40.0% | |
| ACGCCACAACTCTTCATTTA+AGG | - | chr7.2:45688796-45688815 | None:intergenic | 40.0% | |
| AGCTCAATCAAAATAGCCAC+AGG | - | chr7.2:45688393-45688412 | None:intergenic | 40.0% | |
| CGAATGGTTGTATAGTCATG+GGG | + | chr7.2:45687715-45687734 | MS.gene45917:intron | 40.0% | |
| CGCCACAACTCTTCATTTAA+GGG | - | chr7.2:45688795-45688814 | None:intergenic | 40.0% | |
| CTCACCTTCGAATGAAAAAC+TGG | + | chr7.2:45688865-45688884 | MS.gene45917:CDS | 40.0% | |
| CTCGTGTTGAAAAAAGCTTG+AGG | - | chr7.2:45688306-45688325 | None:intergenic | 40.0% | |
| GAATGAAAAACTGGGTAGTG+AGG | + | chr7.2:45688874-45688893 | MS.gene45917:CDS | 40.0% | |
| GCGAATGGTTGTATAGTCAT+GGG | + | chr7.2:45687714-45687733 | MS.gene45917:intron | 40.0% | |
| GGCAGAGGTTTCACAAATTT+AGG | - | chr7.2:45687322-45687341 | None:intergenic | 40.0% | |
| GGGAAAAGGAAAGAAGCTAA+AGG | + | chr7.2:45687385-45687404 | MS.gene45917:CDS | 40.0% | |
| GTCCCTTAAATGAAGAGTTG+TGG | + | chr7.2:45688790-45688809 | MS.gene45917:CDS | 40.0% | |
| TAGATAGAATGCTTCCTCCA+TGG | - | chr7.2:45688724-45688743 | None:intergenic | 40.0% | |
| ! | CTACCCAGTTTTTCATTCGA+AGG | - | chr7.2:45688872-45688891 | None:intergenic | 40.0% |
| ! | GACAATGATGGTGATCTAGA+TGG | + | chr7.2:45687049-45687068 | MS.gene45917:CDS | 40.0% |
| ! | GCATCTTTTCCTTTCCATCT+TGG | - | chr7.2:45688480-45688499 | None:intergenic | 40.0% |
| ! | TTGATGGTTGACACTGAAAC+TGG | - | chr7.2:45688197-45688216 | None:intergenic | 40.0% |
| !! | ATTAATGACGGTGCTGATAC+TGG | + | chr7.2:45688768-45688787 | MS.gene45917:CDS | 40.0% |
| !! | GTATTGGTTTCAGTTAACCG+AGG | + | chr7.2:45686763-45686782 | MS.gene45917:CDS | 40.0% |
| !! | TGGATCATTTTAGTAGCCTG+TGG | + | chr7.2:45688374-45688393 | MS.gene45917:intron | 40.0% |
| !!! | CAAGCTTTTTTCAACACGAG+AGG | + | chr7.2:45688306-45688325 | MS.gene45917:intron | 40.0% |
| AAAAACTGGGTAGTGAGGTC+AGG | + | chr7.2:45688879-45688898 | MS.gene45917:CDS | 45.0% | |
| AAAACTGGGTAGTGAGGTCA+GGG | + | chr7.2:45688880-45688899 | MS.gene45917:CDS | 45.0% | |
| AAAGACTGGGTAGTGAAGTC+AGG | + | chr7.2:45686941-45686960 | MS.gene45917:CDS | 45.0% | |
| AAGAACGCACAATCTCCAGA+CGG | + | chr7.2:45689147-45689166 | MS.gene45917:CDS | 45.0% | |
| AAGACTGGGTAGTGAAGTCA+GGG | + | chr7.2:45686942-45686961 | MS.gene45917:CDS | 45.0% | |
| AAGGTCAAATGGCACCAAGA+TGG | + | chr7.2:45688463-45688482 | MS.gene45917:intron | 45.0% | |
| ACATCCATCTCTCACATTCC+CGG | + | chr7.2:45687478-45687497 | MS.gene45917:CDS | 45.0% | |
| ACCTGTGAGGATAGTTGACA+AGG | + | chr7.2:45686736-45686755 | MS.gene45917:CDS | 45.0% | |
| CAAATGGCACCAAGATGGAA+AGG | + | chr7.2:45688468-45688487 | MS.gene45917:intron | 45.0% | |
| CACAAATTTAGGGAAACGCC+TGG | - | chr7.2:45687311-45687330 | None:intergenic | 45.0% | |
| CAGCACCGTCATTAATCTTG+AGG | - | chr7.2:45688764-45688783 | None:intergenic | 45.0% | |
| CATTGCACAACTCGACTTCT+TGG | + | chr7.2:45687097-45687116 | MS.gene45917:CDS | 45.0% | |
| CTCAGTGATATTGTGAGTCC+AGG | + | chr7.2:45687280-45687299 | MS.gene45917:intron | 45.0% | |
| CTGGACTCACAATATCACTG+AGG | - | chr7.2:45687282-45687301 | None:intergenic | 45.0% | |
| CTTTGCACAACTCGACTTCT+TGG | + | chr7.2:45689035-45689054 | MS.gene45917:CDS | 45.0% | |
| GAGCACCTCCATTAATCTTG+AGG | - | chr7.2:45686823-45686842 | None:intergenic | 45.0% | |
| GATCTCTCACGACATTGTTC+TGG | - | chr7.2:45687238-45687257 | None:intergenic | 45.0% | |
| GGCGAATGGTTGTATAGTCA+TGG | + | chr7.2:45687713-45687732 | MS.gene45917:intron | 45.0% | |
| GGCGGAGATAGAACTATCAT+TGG | + | chr7.2:45687436-45687455 | MS.gene45917:CDS | 45.0% | |
| GTATAGTCATGGGGTAGCAT+TGG | + | chr7.2:45687724-45687743 | MS.gene45917:intron | 45.0% | |
| TAGGTAGAATGCTTCCTCCT+CGG | - | chr7.2:45686783-45686802 | None:intergenic | 45.0% | |
| TCCTTGTCAACTATCCTCAC+AGG | - | chr7.2:45686740-45686759 | None:intergenic | 45.0% | |
| TTGGTTTCAGTTAACCGAGG+AGG | + | chr7.2:45686766-45686785 | MS.gene45917:CDS | 45.0% | |
| ! | TCCACCGGTTGTTGTGAAAA+CGG | - | chr7.2:45687343-45687362 | None:intergenic | 45.0% |
| !! | GTAGCATTGGTTACCCCAAA+AGG | + | chr7.2:45687737-45687756 | MS.gene45917:intron | 45.0% |
| !!! | TCTGCCGTTTTCACAACAAC+CGG | + | chr7.2:45687336-45687355 | MS.gene45917:intron | 45.0% |
| AATTTAGGGAAACGCCTGGG+CGG | - | chr7.2:45687307-45687326 | None:intergenic | 50.0% | |
| AGACTGGGTAGTGAAGTCAG+GGG | + | chr7.2:45686943-45686962 | MS.gene45917:CDS | 50.0% | |
| CATGCTTTGGTCAACCTGTG+AGG | + | chr7.2:45686723-45686742 | MS.gene45917:CDS | 50.0% | |
| CCTGTTGAAGATGCTTCCAC+CGG | - | chr7.2:45687358-45687377 | None:intergenic | 50.0% | |
| GGAGATTGTGCGTTCTTCGA+TGG | - | chr7.2:45689144-45689163 | None:intergenic | 50.0% | |
| GGTTGTTGTGAAAACGGCAG+AGG | - | chr7.2:45687337-45687356 | None:intergenic | 50.0% | |
| TGTACCGGGAATGTGAGAGA+TGG | - | chr7.2:45687485-45687504 | None:intergenic | 50.0% | |
| TGTCTATGTTCAGGGGCGAA+TGG | + | chr7.2:45687699-45687718 | MS.gene45917:intron | 50.0% | |
| TTTATCGCCATCATCCGGCT+CGG | + | chr7.2:45686990-45687009 | MS.gene45917:CDS | 50.0% | |
| ! | AAGGGGGCTACTTTGCTTAG+TGG | + | chr7.2:45687412-45687431 | MS.gene45917:CDS | 50.0% |
| !! | CGGTGGAAGCATCTTCAACA+GGG | + | chr7.2:45687356-45687375 | MS.gene45917:intron | 50.0% |
| !! | GGTGGAAGCATCTTCAACAG+GGG | + | chr7.2:45687357-45687376 | MS.gene45917:intron | 50.0% |
| CATCTTCAACAGGGGAGAGC+GGG | + | chr7.2:45687365-45687384 | MS.gene45917:intron | 55.0% | |
| GCATCTTCAACAGGGGAGAG+CGG | + | chr7.2:45687364-45687383 | MS.gene45917:intron | 55.0% | |
| GCTCGGGTGCATTCTGAGTA+TGG | + | chr7.2:45687007-45687026 | MS.gene45917:CDS | 55.0% | |
| GTGAAGTCAGGGGCTCAGTA+TGG | + | chr7.2:45686953-45686972 | MS.gene45917:CDS | 55.0% | |
| GTGAGGTCAGGGTCTCAGTA+TGG | + | chr7.2:45688891-45688910 | MS.gene45917:CDS | 55.0% | |
| TACTCAGAATGCACCCGAGC+CGG | - | chr7.2:45687007-45687026 | None:intergenic | 55.0% | |
| TTATCGCCATCATCCGGCTC+GGG | + | chr7.2:45686991-45687010 | MS.gene45917:CDS | 55.0% | |
| ! | CCAGACGGAGTCTAGAGCAA+TGG | + | chr7.2:45689162-45689181 | MS.gene45917:CDS | 55.0% |
| ! | CCATTGCTCTAGACTCCGTC+TGG | - | chr7.2:45689165-45689184 | None:intergenic | 55.0% |
| ! | GCTACTTTGCTTAGTGGCGG+CGG | + | chr7.2:45687418-45687437 | MS.gene45917:CDS | 55.0% |
| ! | GGGGCTACTTTGCTTAGTGG+CGG | + | chr7.2:45687415-45687434 | MS.gene45917:CDS | 55.0% |
| !! | CCGGTGGAAGCATCTTCAAC+AGG | + | chr7.2:45687355-45687374 | MS.gene45917:intron | 55.0% |
| !! | GCCGTTTTCACAACAACCGG+TGG | + | chr7.2:45687339-45687358 | MS.gene45917:intron | 55.0% |
| AATGCACCCGAGCCGGATGA+TGG | - | chr7.2:45687000-45687019 | None:intergenic | 60.0% | |
| CAACAGGGGAGAGCGGGAAA+AGG | + | chr7.2:45687371-45687390 | MS.gene45917:intron | 60.0% | |
| CGTGCTTTGGTCGACCTGTG+AGG | + | chr7.2:45688664-45688683 | MS.gene45917:CDS | 60.0% | |
| TTGTGAGTCCAGGTCCGCCC+AGG | + | chr7.2:45687290-45687309 | MS.gene45917:intron | 65.0% | |
| GGGAAACGCCTGGGCGGACC+TGG | - | chr7.2:45687301-45687320 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 45686602 | 45689202 | 45686602 | ID=MS.gene45917 |
| chr7.2 | mRNA | 45686602 | 45689202 | 45686602 | ID=MS.gene45917.t1;Parent=MS.gene45917 |
| chr7.2 | exon | 45686602 | 45687247 | 45686602 | ID=MS.gene45917.t1.exon1;Parent=MS.gene45917.t1 |
| chr7.2 | CDS | 45686602 | 45687247 | 45686602 | ID=cds.MS.gene45917.t1;Parent=MS.gene45917.t1 |
| chr7.2 | exon | 45687377 | 45687499 | 45687377 | ID=MS.gene45917.t1.exon2;Parent=MS.gene45917.t1 |
| chr7.2 | CDS | 45687377 | 45687499 | 45687377 | ID=cds.MS.gene45917.t1;Parent=MS.gene45917.t1 |
| chr7.2 | exon | 45688628 | 45689202 | 45688628 | ID=MS.gene45917.t1.exon3;Parent=MS.gene45917.t1 |
| chr7.2 | CDS | 45688628 | 45689202 | 45688628 | ID=cds.MS.gene45917.t1;Parent=MS.gene45917.t1 |
| Gene Sequence |
| Protein sequence |
