Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46061.t1 | XP_003623168.1 | 94 | 218 | 13 | 0 | 1 | 218 | 1 | 218 | 2.80E-113 | 417.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46061.t1 | P32110 | 67.4 | 224 | 67 | 2 | 1 | 218 | 1 | 224 | 2.7e-80 | 299.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46061.t1 | G7L5L9 | 94.0 | 218 | 13 | 0 | 1 | 218 | 1 | 218 | 2.1e-113 | 417.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene46061 | 0.833611 | 4.83E-56 | -1.69E-46 |
| MS.gene054651 | MS.gene46061 | 0.807074 | 6.04E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene46061 | 0.819106 | 1.38E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene46061 | 0.814384 | 1.58E-51 | -1.69E-46 |
| MS.gene058769 | MS.gene46061 | 0.80409 | 2.55E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene46061 | 0.804972 | 1.67E-49 | -1.69E-46 |
| MS.gene060257 | MS.gene46061 | 0.800475 | 1.42E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46061.t1 | MTR_7g065230 | 94.037 | 218 | 13 | 0 | 1 | 218 | 1 | 218 | 3.29e-151 | 419 |
| MS.gene46061.t1 | MTR_7g065290 | 79.821 | 223 | 40 | 1 | 1 | 218 | 1 | 223 | 1.32e-127 | 359 |
| MS.gene46061.t1 | MTR_7g065600 | 78.475 | 223 | 43 | 1 | 1 | 218 | 1 | 223 | 6.70e-126 | 355 |
| MS.gene46061.t1 | MTR_7g065590 | 78.475 | 223 | 43 | 1 | 1 | 218 | 1 | 223 | 2.61e-124 | 351 |
| MS.gene46061.t1 | MTR_7g065265 | 78.475 | 223 | 43 | 1 | 1 | 218 | 1 | 223 | 9.81e-124 | 349 |
| MS.gene46061.t1 | MTR_7g065270 | 75.336 | 223 | 50 | 1 | 1 | 218 | 1 | 223 | 2.83e-120 | 341 |
| MS.gene46061.t1 | MTR_7g065260 | 78.125 | 224 | 43 | 2 | 1 | 218 | 8 | 231 | 1.04e-114 | 327 |
| MS.gene46061.t1 | MTR_7g065630 | 69.091 | 220 | 67 | 1 | 1 | 219 | 19 | 238 | 1.91e-106 | 306 |
| MS.gene46061.t1 | MTR_7g065660 | 64.286 | 224 | 75 | 1 | 1 | 219 | 1 | 224 | 1.25e-100 | 291 |
| MS.gene46061.t1 | MTR_7g065720 | 64.732 | 224 | 73 | 2 | 1 | 218 | 1 | 224 | 3.32e-98 | 285 |
| MS.gene46061.t1 | MTR_7g065710 | 66.995 | 203 | 66 | 1 | 8 | 209 | 5 | 207 | 4.70e-96 | 279 |
| MS.gene46061.t1 | MTR_4g019790 | 60.268 | 224 | 84 | 1 | 1 | 219 | 1 | 224 | 5.93e-96 | 279 |
| MS.gene46061.t1 | MTR_7g065750 | 60.889 | 225 | 82 | 2 | 1 | 219 | 1 | 225 | 3.81e-93 | 272 |
| MS.gene46061.t1 | MTR_7g065680 | 66.364 | 220 | 73 | 1 | 1 | 219 | 1 | 220 | 1.15e-92 | 271 |
| MS.gene46061.t1 | MTR_7g065640 | 62.100 | 219 | 70 | 2 | 1 | 219 | 1 | 206 | 1.61e-91 | 267 |
| MS.gene46061.t1 | MTR_7g065740 | 58.222 | 225 | 88 | 2 | 1 | 219 | 1 | 225 | 9.04e-91 | 266 |
| MS.gene46061.t1 | MTR_7g065700 | 66.667 | 210 | 69 | 1 | 1 | 209 | 1 | 210 | 2.72e-88 | 260 |
| MS.gene46061.t1 | MTR_4g019780 | 59.813 | 214 | 79 | 3 | 3 | 210 | 4 | 216 | 1.81e-85 | 252 |
| MS.gene46061.t1 | MTR_6g080440 | 47.511 | 221 | 106 | 4 | 7 | 218 | 3 | 222 | 3.89e-60 | 188 |
| MS.gene46061.t1 | MTR_1g090150 | 44.595 | 222 | 113 | 4 | 6 | 219 | 2 | 221 | 1.16e-59 | 187 |
| MS.gene46061.t1 | MTR_1g115195 | 46.948 | 213 | 105 | 3 | 7 | 211 | 3 | 215 | 2.83e-58 | 183 |
| MS.gene46061.t1 | MTR_8g087410 | 44.643 | 224 | 116 | 4 | 1 | 218 | 1 | 222 | 2.61e-56 | 178 |
| MS.gene46061.t1 | MTR_5g040430 | 44.144 | 222 | 111 | 4 | 1 | 210 | 1 | 221 | 4.03e-56 | 178 |
| MS.gene46061.t1 | MTR_3g099757 | 43.860 | 228 | 107 | 4 | 5 | 219 | 3 | 222 | 7.13e-56 | 177 |
| MS.gene46061.t1 | MTR_8g087425 | 44.037 | 218 | 115 | 3 | 4 | 215 | 2 | 218 | 8.65e-56 | 177 |
| MS.gene46061.t1 | MTR_1g090070 | 42.986 | 221 | 118 | 3 | 7 | 219 | 9 | 229 | 1.64e-55 | 177 |
| MS.gene46061.t1 | MTR_4g059730 | 42.593 | 216 | 115 | 3 | 6 | 213 | 3 | 217 | 2.11e-55 | 176 |
| MS.gene46061.t1 | MTR_1g090060 | 44.749 | 219 | 112 | 5 | 7 | 217 | 3 | 220 | 2.42e-55 | 176 |
| MS.gene46061.t1 | MTR_1g090090 | 43.379 | 219 | 115 | 4 | 7 | 217 | 3 | 220 | 3.78e-55 | 176 |
| MS.gene46061.t1 | MTR_1g090100 | 43.379 | 219 | 115 | 4 | 8 | 218 | 3 | 220 | 2.61e-53 | 171 |
| MS.gene46061.t1 | MTR_8g061950 | 42.922 | 219 | 112 | 5 | 5 | 210 | 3 | 221 | 1.87e-47 | 156 |
| MS.gene46061.t1 | MTR_5g037380 | 41.818 | 220 | 113 | 5 | 1 | 207 | 1 | 218 | 6.01e-47 | 155 |
| MS.gene46061.t1 | MTR_2g070130 | 41.546 | 207 | 109 | 6 | 6 | 204 | 3 | 205 | 1.87e-42 | 143 |
| MS.gene46061.t1 | MTR_2g070150 | 42.157 | 204 | 108 | 6 | 6 | 202 | 3 | 203 | 3.70e-42 | 142 |
| MS.gene46061.t1 | MTR_3g467420 | 41.395 | 215 | 116 | 6 | 1 | 207 | 1 | 213 | 4.34e-42 | 142 |
| MS.gene46061.t1 | MTR_2g070200 | 49.032 | 155 | 77 | 2 | 6 | 158 | 3 | 157 | 1.56e-41 | 140 |
| MS.gene46061.t1 | MTR_2g070140 | 41.237 | 194 | 104 | 6 | 21 | 207 | 2 | 192 | 7.70e-40 | 135 |
| MS.gene46061.t1 | MTR_2g070120 | 37.198 | 207 | 124 | 4 | 6 | 207 | 3 | 208 | 1.67e-39 | 135 |
| MS.gene46061.t1 | MTR_4g124130 | 45.312 | 192 | 90 | 7 | 6 | 187 | 3 | 189 | 2.23e-39 | 135 |
| MS.gene46061.t1 | MTR_3g467430 | 40.000 | 210 | 118 | 5 | 4 | 207 | 6 | 213 | 2.65e-39 | 135 |
| MS.gene46061.t1 | MTR_2g070210 | 39.524 | 210 | 117 | 6 | 6 | 207 | 3 | 210 | 4.05e-39 | 134 |
| MS.gene46061.t1 | MTR_8g056940 | 38.991 | 218 | 120 | 6 | 6 | 213 | 3 | 217 | 4.92e-38 | 131 |
| MS.gene46061.t1 | MTR_2g070180 | 38.049 | 205 | 119 | 5 | 6 | 204 | 3 | 205 | 6.94e-38 | 131 |
| MS.gene46061.t1 | MTR_5g076900 | 37.736 | 212 | 122 | 5 | 3 | 207 | 2 | 210 | 1.42e-36 | 128 |
| MS.gene46061.t1 | MTR_2g070070 | 37.327 | 217 | 126 | 5 | 7 | 216 | 4 | 217 | 5.31e-35 | 124 |
| MS.gene46061.t1 | MTR_2g070060 | 36.058 | 208 | 123 | 5 | 7 | 207 | 4 | 208 | 2.14e-34 | 122 |
| MS.gene46061.t1 | MTR_0186s0030 | 46.429 | 140 | 73 | 2 | 6 | 144 | 3 | 141 | 2.47e-32 | 114 |
| MS.gene46061.t1 | MTR_2g070110 | 39.698 | 199 | 111 | 5 | 7 | 199 | 4 | 199 | 5.31e-28 | 105 |
| MS.gene46061.t1 | MTR_2g072120 | 45.455 | 66 | 35 | 1 | 51 | 115 | 2 | 67 | 8.98e-16 | 69.7 |
| MS.gene46061.t1 | MTR_4g134370 | 28.632 | 234 | 140 | 8 | 1 | 211 | 1 | 230 | 9.99e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46061.t1 | AT3G09270 | 50.446 | 224 | 102 | 5 | 3 | 218 | 2 | 224 | 3.12e-69 | 211 |
| MS.gene46061.t1 | AT2G29420 | 48.402 | 219 | 106 | 3 | 3 | 215 | 5 | 222 | 3.21e-68 | 209 |
| MS.gene46061.t1 | AT2G29490 | 49.761 | 209 | 97 | 3 | 1 | 202 | 1 | 208 | 3.51e-61 | 191 |
| MS.gene46061.t1 | AT2G29480 | 48.673 | 226 | 107 | 4 | 1 | 219 | 1 | 224 | 2.74e-60 | 189 |
| MS.gene46061.t1 | AT2G29460 | 46.222 | 225 | 113 | 4 | 1 | 218 | 1 | 224 | 1.54e-58 | 184 |
| MS.gene46061.t1 | AT2G29450 | 49.275 | 207 | 98 | 3 | 3 | 202 | 2 | 208 | 7.59e-58 | 182 |
| MS.gene46061.t1 | AT2G29470 | 45.714 | 210 | 105 | 4 | 1 | 202 | 1 | 209 | 8.84e-55 | 174 |
| MS.gene46061.t1 | AT1G69930 | 39.286 | 224 | 125 | 3 | 2 | 214 | 7 | 230 | 1.24e-50 | 164 |
| MS.gene46061.t1 | AT2G29440 | 43.111 | 225 | 119 | 5 | 1 | 218 | 1 | 223 | 1.34e-50 | 164 |
| MS.gene46061.t1 | AT1G10370 | 43.439 | 221 | 111 | 5 | 1 | 209 | 1 | 219 | 1.56e-50 | 164 |
| MS.gene46061.t1 | AT1G59700 | 44.206 | 233 | 110 | 7 | 5 | 219 | 4 | 234 | 5.19e-50 | 163 |
| MS.gene46061.t1 | AT1G59670 | 42.593 | 216 | 111 | 5 | 5 | 207 | 4 | 219 | 1.23e-47 | 157 |
| MS.gene46061.t1 | AT1G10360 | 39.352 | 216 | 119 | 4 | 6 | 209 | 4 | 219 | 1.84e-46 | 153 |
| MS.gene46061.t1 | AT1G74590 | 38.197 | 233 | 129 | 5 | 1 | 219 | 1 | 232 | 1.99e-46 | 154 |
| MS.gene46061.t1 | AT1G27130 | 40.000 | 225 | 121 | 6 | 1 | 212 | 1 | 224 | 6.90e-46 | 152 |
| MS.gene46061.t1 | AT1G78340 | 44.340 | 212 | 111 | 6 | 6 | 211 | 3 | 213 | 1.37e-44 | 148 |
| MS.gene46061.t1 | AT1G27140 | 38.596 | 228 | 123 | 6 | 1 | 213 | 1 | 226 | 1.62e-44 | 149 |
| MS.gene46061.t1 | AT5G62480 | 38.991 | 218 | 117 | 4 | 8 | 210 | 9 | 225 | 2.30e-44 | 148 |
| MS.gene46061.t1 | AT1G17170 | 42.396 | 217 | 116 | 6 | 6 | 216 | 3 | 216 | 7.88e-43 | 144 |
| MS.gene46061.t1 | AT1G78370 | 42.424 | 198 | 106 | 5 | 16 | 207 | 13 | 208 | 1.42e-42 | 143 |
| MS.gene46061.t1 | AT1G78380 | 43.192 | 213 | 101 | 7 | 7 | 207 | 4 | 208 | 8.16e-42 | 141 |
| MS.gene46061.t1 | AT1G78320 | 41.346 | 208 | 112 | 5 | 5 | 205 | 2 | 206 | 1.64e-41 | 140 |
| MS.gene46061.t1 | AT1G69920 | 37.991 | 229 | 125 | 7 | 1 | 213 | 26 | 253 | 2.66e-41 | 141 |
| MS.gene46061.t1 | AT1G53680 | 38.679 | 212 | 120 | 5 | 1 | 204 | 1 | 210 | 3.83e-38 | 132 |
| MS.gene46061.t1 | AT1G17180 | 40.670 | 209 | 114 | 6 | 6 | 207 | 3 | 208 | 8.64e-38 | 131 |
| MS.gene46061.t1 | AT1G78360 | 41.148 | 209 | 112 | 6 | 7 | 207 | 4 | 209 | 1.18e-35 | 125 |
| MS.gene46061.t1 | AT3G43800 | 38.164 | 207 | 114 | 7 | 4 | 199 | 2 | 205 | 2.29e-35 | 125 |
| MS.gene46061.t1 | AT1G17190 | 40.426 | 188 | 104 | 5 | 6 | 187 | 4 | 189 | 3.73e-34 | 122 |
| MS.gene46061.t1 | AT5G62480 | 30.415 | 217 | 111 | 4 | 8 | 210 | 9 | 199 | 1.81e-26 | 101 |
| MS.gene46061.t1 | AT5G62480 | 30.415 | 217 | 110 | 4 | 8 | 210 | 9 | 198 | 3.72e-26 | 100 |
| MS.gene46061.t1 | AT1G78320 | 33.981 | 206 | 101 | 5 | 6 | 205 | 3 | 179 | 1.38e-24 | 96.3 |
| MS.gene46061.t1 | AT2G02390 | 30.841 | 214 | 130 | 6 | 3 | 202 | 4 | 213 | 9.42e-18 | 79.0 |
| MS.gene46061.t1 | AT2G02380 | 30.189 | 212 | 130 | 7 | 5 | 202 | 9 | 216 | 1.34e-17 | 78.6 |
| MS.gene46061.t1 | AT2G02390 | 30.317 | 221 | 129 | 7 | 3 | 202 | 4 | 220 | 1.49e-16 | 75.9 |
| MS.gene46061.t1 | AT2G02390 | 32.353 | 170 | 102 | 4 | 3 | 160 | 4 | 172 | 1.13e-14 | 70.1 |
Find 50 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGCCTTAGCTCGTTTC+TGG | 0.128575 | 7.2:-42727556 | MS.gene46061:CDS |
| TTGGGTGGTTATTGAAGTTT+TGG | 0.282844 | 7.2:+42725929 | None:intergenic |
| TAAGGATCAGAAGGCAATAT+TGG | 0.299422 | 7.2:+42727581 | None:intergenic |
| ACAGGAACCTTCTTATAAAC+AGG | 0.304362 | 7.2:+42727680 | None:intergenic |
| AATCACAAGGGATTCTGATA+TGG | 0.316304 | 7.2:+42727637 | None:intergenic |
| AAAGCCAAAAGAGTTTCTTT+AGG | 0.333929 | 7.2:+42725886 | None:intergenic |
| CCCTCCTAAAGAAACTCTTT+TGG | 0.353378 | 7.2:-42725890 | MS.gene46061:CDS |
| GAGCTCAACGACAAATTCTT+TGG | 0.356041 | 7.2:-42726063 | MS.gene46061:CDS |
| TGAGAATGCTATTGAGGAAA+TGG | 0.394079 | 7.2:-42726112 | MS.gene46061:CDS |
| TGGCTCCAATTGTATAGCTT+GGG | 0.407064 | 7.2:+42725949 | None:intergenic |
| TTCTTTGGTGGGGACGAGAT+AGG | 0.408069 | 7.2:-42726048 | MS.gene46061:CDS |
| ATCTCCACCCTTGTTACAAA+TGG | 0.430811 | 7.2:+42727785 | None:intergenic |
| GACCAAGTTCATAGATGATA+AGG | 0.434027 | 7.2:-42727534 | MS.gene46061:intron |
| TTGGCTCCAATTGTATAGCT+TGG | 0.435163 | 7.2:+42725948 | None:intergenic |
| GGAGATTGCTCTAAAATTGA+AGG | 0.444678 | 7.2:-42727768 | MS.gene46061:CDS |
| AATTTCCCAAGCTATACAAT+TGG | 0.447128 | 7.2:-42725954 | MS.gene46061:CDS |
| TGCTTCTTGTAAAGCTATGA+AGG | 0.449295 | 7.2:+42726005 | None:intergenic |
| GCCAAAAGAGTTTCTTTAGG+AGG | 0.460050 | 7.2:+42725889 | None:intergenic |
| CAAGTATGAGGAAGAAAAGT+GGG | 0.461699 | 7.2:-42727735 | MS.gene46061:CDS |
| ATACAACCCTGTTTATAAGA+AGG | 0.470144 | 7.2:-42727687 | MS.gene46061:CDS |
| TACCTTATCATCTATGAACT+TGG | 0.479710 | 7.2:+42727532 | None:intergenic |
| CCAAAAGAGTTTCTTTAGGA+GGG | 0.480468 | 7.2:+42725890 | None:intergenic |
| GGGAGTTGAATACAAGTATG+AGG | 0.484614 | 7.2:-42727747 | MS.gene46061:CDS |
| ATAGCTTTACAAGAAGCAAT+GGG | 0.492765 | 7.2:-42726000 | MS.gene46061:CDS |
| TTATCATTATGAACTAATAC+AGG | 0.495003 | 7.2:+42727662 | None:intergenic |
| ATCACAAGGGATTCTGATAT+GGG | 0.495407 | 7.2:+42727638 | None:intergenic |
| TTGAGTATATTGATGAGACT+TGG | 0.504629 | 7.2:-42727613 | MS.gene46061:CDS |
| CATAGCTTTACAAGAAGCAA+TGG | 0.510699 | 7.2:-42726001 | MS.gene46061:CDS |
| TCAACGACAAATTCTTTGGT+GGG | 0.514899 | 7.2:-42726059 | MS.gene46061:CDS |
| AGAACGTGAGAATGCTATTG+AGG | 0.521783 | 7.2:-42726118 | MS.gene46061:CDS |
| TTTACAAGAAGCAATGGGAT+TGG | 0.526964 | 7.2:-42725995 | MS.gene46061:CDS |
| CTCAACGACAAATTCTTTGG+TGG | 0.531581 | 7.2:-42726060 | MS.gene46061:CDS |
| AGCTTGGGAAATTTCTCACT+AGG | 0.532395 | 7.2:+42725964 | None:intergenic |
| TGCTATTGAGGAAATGGAAG+TGG | 0.535112 | 7.2:-42726106 | MS.gene46061:CDS |
| GCTTGGGAAATTTCTCACTA+GGG | 0.541674 | 7.2:+42725965 | None:intergenic |
| TGGAAAGTCCATTTGTAACA+AGG | 0.543252 | 7.2:-42727793 | MS.gene46061:CDS |
| ACAAGTATGAGGAAGAAAAG+TGG | 0.564735 | 7.2:-42727736 | MS.gene46061:CDS |
| CAGGAACCTTCTTATAAACA+GGG | 0.585709 | 7.2:+42727681 | None:intergenic |
| GGAAAGTCCATTTGTAACAA+GGG | 0.593380 | 7.2:-42727792 | MS.gene46061:CDS |
| CAACGACAAATTCTTTGGTG+GGG | 0.597845 | 7.2:-42726058 | MS.gene46061:CDS |
| CAATATACTCAAGAATCACA+AGG | 0.601780 | 7.2:+42727624 | None:intergenic |
| CAATAACCACCCAATTGTCA+AGG | 0.611678 | 7.2:-42725920 | MS.gene46061:CDS |
| GATGGCATCAAATAAAGAAG+AGG | 0.614523 | 7.2:-42727834 | MS.gene46061:CDS |
| GAGATTGCTCTAAAATTGAA+GGG | 0.615792 | 7.2:-42727767 | MS.gene46061:CDS |
| AAGTATGAGGAAGAAAAGTG+GGG | 0.629580 | 7.2:-42727734 | MS.gene46061:CDS |
| CTTGGTCCAGAAACGAGCTA+AGG | 0.632263 | 7.2:+42727550 | None:intergenic |
| AAGTCCATTTGTAACAAGGG+TGG | 0.642673 | 7.2:-42727789 | MS.gene46061:CDS |
| GCCAGTGTTTGAATGTTGTG+CGG | 0.675254 | 7.2:-42726167 | MS.gene46061:intron |
| AATATACTCAAGAATCACAA+GGG | 0.678725 | 7.2:+42727625 | None:intergenic |
| AGTATGAGGAAGAAAAGTGG+GGG | 0.714879 | 7.2:-42727733 | MS.gene46061:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATAAAAAATTAA+AGG | + | chr7.2:42727065-42727084 | None:intergenic | 0.0% |
| !! | AAACTTAGTTATAATTATAT+AGG | - | chr7.2:42727158-42727177 | MS.gene46061:intron | 10.0% |
| !!! | ATTACATTAATTTTTTTTGA+AGG | + | chr7.2:42726954-42726973 | None:intergenic | 10.0% |
| !! | TAAAATATGTTATGTGATTA+TGG | - | chr7.2:42726458-42726477 | MS.gene46061:intron | 15.0% |
| !! | TGTAATTGAAAATACAAAAA+AGG | - | chr7.2:42726968-42726987 | MS.gene46061:intron | 15.0% |
| !!! | AATTGTAAGAAAAAAACTTT+TGG | + | chr7.2:42726563-42726582 | None:intergenic | 15.0% |
| !!! | ATTCACATTTAATTTATGTT+TGG | + | chr7.2:42726675-42726694 | None:intergenic | 15.0% |
| !! | AATCCCTAAGATAATTTATT+TGG | + | chr7.2:42726852-42726871 | None:intergenic | 20.0% |
| !! | CATCCAAATAAATTATCTTA+GGG | - | chr7.2:42726846-42726865 | MS.gene46061:intron | 20.0% |
| !! | CCAAAAAGATCTTATATTTA+GGG | - | chr7.2:42727016-42727035 | MS.gene46061:intron | 20.0% |
| !! | TCATCCAAATAAATTATCTT+AGG | - | chr7.2:42726845-42726864 | MS.gene46061:intron | 20.0% |
| !! | TGTTGAATCACAAATTATTT+AGG | + | chr7.2:42726763-42726782 | None:intergenic | 20.0% |
| !! | TTATCATTATGAACTAATAC+AGG | + | chr7.2:42726020-42726039 | None:intergenic | 20.0% |
| !!! | ACAAAAAAGGTCTTATAAAA+AGG | - | chr7.2:42726981-42727000 | MS.gene46061:intron | 20.0% |
| !!! | ATATTTTATGTCGATGTAAA+TGG | + | chr7.2:42726446-42726465 | None:intergenic | 20.0% |
| !!! | CAAAAAAGGTCTTATAAAAA+GGG | - | chr7.2:42726982-42727001 | MS.gene46061:intron | 20.0% |
| !!! | CCTAAATATAAGATCTTTTT+GGG | + | chr7.2:42727018-42727037 | None:intergenic | 20.0% |
| ! | AAAAATTAAAGGTGACAATG+AGG | + | chr7.2:42727054-42727073 | None:intergenic | 25.0% |
| ! | AAAATTAAAGGTGACAATGA+GGG | + | chr7.2:42727053-42727072 | None:intergenic | 25.0% |
| ! | AATATACTCAAGAATCACAA+GGG | + | chr7.2:42726057-42726076 | None:intergenic | 25.0% |
| ! | AATATGGCTGAGTAAATATA+GGG | + | chr7.2:42726214-42726233 | None:intergenic | 25.0% |
| ! | AGAAAGAAAATAAGTTGTTG+AGG | - | chr7.2:42727274-42727293 | MS.gene46061:intron | 25.0% |
| ! | ATTTATTTGGATGAACAACA+AGG | + | chr7.2:42726839-42726858 | None:intergenic | 25.0% |
| ! | CCCAAAAAGATCTTATATTT+AGG | - | chr7.2:42727015-42727034 | MS.gene46061:intron | 25.0% |
| ! | GAAAGAAAATAAGTTGTTGA+GGG | - | chr7.2:42727275-42727294 | MS.gene46061:intron | 25.0% |
| ! | TGATCTCAAATATATGAACT+TGG | + | chr7.2:42726800-42726819 | None:intergenic | 25.0% |
| !! | ATGTAAATGGTTTTTATTCG+AGG | + | chr7.2:42726433-42726452 | None:intergenic | 25.0% |
| !! | CCCTAAATATAAGATCTTTT+TGG | + | chr7.2:42727019-42727038 | None:intergenic | 25.0% |
| !! | GTTCATATATTTGAGATCAT+AGG | - | chr7.2:42726801-42726820 | MS.gene46061:intron | 25.0% |
| AAACACTCTTTCCTTGAAAA+AGG | - | chr7.2:42727117-42727136 | MS.gene46061:intron | 30.0% | |
| AAAGCCAAAAGAGTTTCTTT+AGG | + | chr7.2:42727796-42727815 | None:intergenic | 30.0% | |
| AAATTAAAGGTGACAATGAG+GGG | + | chr7.2:42727052-42727071 | None:intergenic | 30.0% | |
| AACACTCTTTCCTTGAAAAA+GGG | - | chr7.2:42727118-42727137 | MS.gene46061:intron | 30.0% | |
| AACATTGAATTATGCTAGTC+GGG | - | chr7.2:42726264-42726283 | MS.gene46061:intron | 30.0% | |
| AAGTTATGCTAAAGGGAATA+TGG | + | chr7.2:42726230-42726249 | None:intergenic | 30.0% | |
| AATTTCCCAAGCTATACAAT+TGG | - | chr7.2:42727725-42727744 | MS.gene46061:CDS | 30.0% | |
| ACCATCTAAGTTATGCTAAA+GGG | + | chr7.2:42726237-42726256 | None:intergenic | 30.0% | |
| ATACAACCCTGTTTATAAGA+AGG | - | chr7.2:42725992-42726011 | MS.gene46061:CDS | 30.0% | |
| CAATATACTCAAGAATCACA+AGG | + | chr7.2:42726058-42726077 | None:intergenic | 30.0% | |
| CACAAAGAAAAATAGAAGAG+TGG | + | chr7.2:42726372-42726391 | None:intergenic | 30.0% | |
| CTAAGTTTGAGCTCAATTTA+AGG | + | chr7.2:42727146-42727165 | None:intergenic | 30.0% | |
| CTTTGTGTAACTCTAGTATA+AGG | - | chr7.2:42726385-42726404 | MS.gene46061:intron | 30.0% | |
| GAACATTGAATTATGCTAGT+CGG | - | chr7.2:42726263-42726282 | MS.gene46061:intron | 30.0% | |
| GAATATGGCTGAGTAAATAT+AGG | + | chr7.2:42726215-42726234 | None:intergenic | 30.0% | |
| TAAGCAGAGAATATTAGAAG+AGG | + | chr7.2:42726181-42726200 | None:intergenic | 30.0% | |
| TACCATCTAAGTTATGCTAA+AGG | + | chr7.2:42726238-42726257 | None:intergenic | 30.0% | |
| TACCTTATCATCTATGAACT+TGG | + | chr7.2:42726150-42726169 | None:intergenic | 30.0% | |
| TATGAGTGTACACATATCTT+TGG | - | chr7.2:42727314-42727333 | MS.gene46061:intron | 30.0% | |
| TTGAGTATATTGATGAGACT+TGG | - | chr7.2:42726066-42726085 | MS.gene46061:CDS | 30.0% | |
| ! | AAAAGTCGAAGGAAACTTTT+AGG | + | chr7.2:42726534-42726553 | None:intergenic | 30.0% |
| ! | AAAGAAGAGGTAAAGCTTTT+TGG | - | chr7.2:42725858-42725877 | MS.gene46061:CDS | 30.0% |
| ! | ATAGCTTTACAAGAAGCAAT+GGG | - | chr7.2:42727679-42727698 | MS.gene46061:CDS | 30.0% |
| !! | ATTTAAGGAACCCTTTTTCA+AGG | + | chr7.2:42727131-42727150 | None:intergenic | 30.0% |
| !! | GAGATTGCTCTAAAATTGAA+GGG | - | chr7.2:42725912-42725931 | MS.gene46061:CDS | 30.0% |
| AAGTATGAGGAAGAAAAGTG+GGG | - | chr7.2:42725945-42725964 | MS.gene46061:CDS | 35.0% | |
| AATCACAAGGGATTCTGATA+TGG | + | chr7.2:42726045-42726064 | None:intergenic | 35.0% | |
| ACAAGTATGAGGAAGAAAAG+TGG | - | chr7.2:42725943-42725962 | MS.gene46061:CDS | 35.0% | |
| ACAGGAACCTTCTTATAAAC+AGG | + | chr7.2:42726002-42726021 | None:intergenic | 35.0% | |
| ACATTGAATTATGCTAGTCG+GGG | - | chr7.2:42726265-42726284 | MS.gene46061:intron | 35.0% | |
| ATCACAAGGGATTCTGATAT+GGG | + | chr7.2:42726044-42726063 | None:intergenic | 35.0% | |
| CAAGTATGAGGAAGAAAAGT+GGG | - | chr7.2:42725944-42725963 | MS.gene46061:CDS | 35.0% | |
| CAGGAACCTTCTTATAAACA+GGG | + | chr7.2:42726001-42726020 | None:intergenic | 35.0% | |
| GACCAAGTTCATAGATGATA+AGG | - | chr7.2:42726145-42726164 | MS.gene46061:CDS | 35.0% | |
| GATAAAGAGACATGATGAAG+CGG | - | chr7.2:42727206-42727225 | MS.gene46061:intron | 35.0% | |
| GGAAAGTCCATTTGTAACAA+GGG | - | chr7.2:42725887-42725906 | MS.gene46061:CDS | 35.0% | |
| TAAGGATCAGAAGGCAATAT+TGG | + | chr7.2:42726101-42726120 | None:intergenic | 35.0% | |
| TCAACGACAAATTCTTTGGT+GGG | - | chr7.2:42727620-42727639 | MS.gene46061:CDS | 35.0% | |
| TCCCTTTAGCATAACTTAGA+TGG | - | chr7.2:42726233-42726252 | MS.gene46061:intron | 35.0% | |
| TGAGAATGCTATTGAGGAAA+TGG | - | chr7.2:42727567-42727586 | MS.gene46061:CDS | 35.0% | |
| TGCTTCTTGTAAAGCTATGA+AGG | + | chr7.2:42727677-42727696 | None:intergenic | 35.0% | |
| TGGAAAGTCCATTTGTAACA+AGG | - | chr7.2:42725886-42725905 | MS.gene46061:CDS | 35.0% | |
| TTTACAAGAAGCAATGGGAT+TGG | - | chr7.2:42727684-42727703 | MS.gene46061:CDS | 35.0% | |
| TTTGGAGAACTAAAAGTCGA+AGG | + | chr7.2:42726545-42726564 | None:intergenic | 35.0% | |
| ! | CATAGCTTTACAAGAAGCAA+TGG | - | chr7.2:42727678-42727697 | MS.gene46061:CDS | 35.0% |
| ! | CCAAAAGAGTTTCTTTAGGA+GGG | + | chr7.2:42727792-42727811 | None:intergenic | 35.0% |
| ! | GGAGTTTTTCCTTGACAATT+GGG | + | chr7.2:42727771-42727790 | None:intergenic | 35.0% |
| ! | GGTAAAGCTTTTTGGATTGT+TGG | - | chr7.2:42725866-42725885 | MS.gene46061:CDS | 35.0% |
| ! | TTGGGTGGTTATTGAAGTTT+TGG | + | chr7.2:42727753-42727772 | None:intergenic | 35.0% |
| !! | GGAGATTGCTCTAAAATTGA+AGG | - | chr7.2:42725911-42725930 | MS.gene46061:CDS | 35.0% |
| AAGTCCATTTGTAACAAGGG+TGG | - | chr7.2:42725890-42725909 | MS.gene46061:CDS | 40.0% | |
| AGAACGTGAGAATGCTATTG+AGG | - | chr7.2:42727561-42727580 | MS.gene46061:CDS | 40.0% | |
| AGCTTGGGAAATTTCTCACT+AGG | + | chr7.2:42727718-42727737 | None:intergenic | 40.0% | |
| AGTATGAGGAAGAAAAGTGG+GGG | - | chr7.2:42725946-42725965 | MS.gene46061:CDS | 40.0% | |
| ATCTCCACCCTTGTTACAAA+TGG | + | chr7.2:42725897-42725916 | None:intergenic | 40.0% | |
| CAACGACAAATTCTTTGGTG+GGG | - | chr7.2:42727621-42727640 | MS.gene46061:CDS | 40.0% | |
| CAATAACCACCCAATTGTCA+AGG | - | chr7.2:42727759-42727778 | MS.gene46061:CDS | 40.0% | |
| CTCAACGACAAATTCTTTGG+TGG | - | chr7.2:42727619-42727638 | MS.gene46061:CDS | 40.0% | |
| GAGCTCAACGACAAATTCTT+TGG | - | chr7.2:42727616-42727635 | MS.gene46061:CDS | 40.0% | |
| GCCAAAAGAGTTTCTTTAGG+AGG | + | chr7.2:42727793-42727812 | None:intergenic | 40.0% | |
| GCTTGGGAAATTTCTCACTA+GGG | + | chr7.2:42727717-42727736 | None:intergenic | 40.0% | |
| GGGAGTTGAATACAAGTATG+AGG | - | chr7.2:42725932-42725951 | MS.gene46061:CDS | 40.0% | |
| TGCTATTGAGGAAATGGAAG+TGG | - | chr7.2:42727573-42727592 | MS.gene46061:CDS | 40.0% | |
| TGGCTCCAATTGTATAGCTT+GGG | + | chr7.2:42727733-42727752 | None:intergenic | 40.0% | |
| TTGGCTCCAATTGTATAGCT+TGG | + | chr7.2:42727734-42727753 | None:intergenic | 40.0% | |
| ! | CCCTCCTAAAGAAACTCTTT+TGG | - | chr7.2:42727789-42727808 | MS.gene46061:CDS | 40.0% |
| ! | GCTCTTTTGTAAGGATCAGA+AGG | + | chr7.2:42726110-42726129 | None:intergenic | 40.0% |
| ! | GGGAGTTTTTCCTTGACAAT+TGG | + | chr7.2:42727772-42727791 | None:intergenic | 40.0% |
| ! | GTTTTTCCTTGACAATTGGG+TGG | + | chr7.2:42727768-42727787 | None:intergenic | 40.0% |
| AAAGAGCCTTAGCTCGTTTC+TGG | - | chr7.2:42726123-42726142 | MS.gene46061:CDS | 45.0% | |
| GCCAGTGTTTGAATGTTGTG+CGG | - | chr7.2:42727512-42727531 | MS.gene46061:intron | 45.0% | |
| TCCGCACAACATTCAAACAC+TGG | + | chr7.2:42727516-42727535 | None:intergenic | 45.0% | |
| ! | CGAGCTAAGGCTCTTTTGTA+AGG | + | chr7.2:42726119-42726138 | None:intergenic | 45.0% |
| !! | TAATAATAATATATATGAAT+AGG | + | chr7.2:42726704-42726723 | None:intergenic | 5.0% |
| !!! | AGATAAATTAATTTATATTT+TGG | + | chr7.2:42727370-42727389 | None:intergenic | 5.0% |
| !!! | GTTTTTATTTTTATTTTTTA+AGG | + | chr7.2:42727421-42727440 | None:intergenic | 5.0% |
| CTTGGTCCAGAAACGAGCTA+AGG | + | chr7.2:42726132-42726151 | None:intergenic | 50.0% | |
| TTCTTTGGTGGGGACGAGAT+AGG | - | chr7.2:42727631-42727650 | MS.gene46061:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 42725846 | 42727855 | 42725846 | ID=MS.gene46061 |
| chr7.2 | mRNA | 42725846 | 42727855 | 42725846 | ID=MS.gene46061.t1;Parent=MS.gene46061 |
| chr7.2 | exon | 42727535 | 42727855 | 42727535 | ID=MS.gene46061.t1.exon1;Parent=MS.gene46061.t1 |
| chr7.2 | CDS | 42727535 | 42727855 | 42727535 | ID=cds.MS.gene46061.t1;Parent=MS.gene46061.t1 |
| chr7.2 | exon | 42725846 | 42726184 | 42725846 | ID=MS.gene46061.t1.exon2;Parent=MS.gene46061.t1 |
| chr7.2 | CDS | 42725846 | 42726184 | 42725846 | ID=cds.MS.gene46061.t1;Parent=MS.gene46061.t1 |
| Gene Sequence |
| Protein sequence |
