Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46857.t1 | XP_024626767.1 | 78.4 | 343 | 23 | 1 | 1 | 343 | 1 | 292 | 5.10E-133 | 484.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46857.t1 | A0A1U8KII2 | 64.3 | 339 | 110 | 6 | 1 | 336 | 1 | 331 | 1.1e-102 | 382.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049711 | MS.gene46857 | 0.816521 | 5.30E-52 | -1.69E-46 |
MS.gene050559 | MS.gene46857 | 0.804232 | 2.38E-49 | -1.69E-46 |
MS.gene050562 | MS.gene46857 | 0.802572 | 5.26E-49 | -1.69E-46 |
MS.gene051279 | MS.gene46857 | 0.82691 | 2.09E-54 | -1.69E-46 |
MS.gene053144 | MS.gene46857 | 0.811611 | 6.42E-51 | -1.69E-46 |
MS.gene054584 | MS.gene46857 | 0.800184 | 1.62E-48 | -1.69E-46 |
MS.gene055083 | MS.gene46857 | 0.807462 | 5.00E-50 | -1.69E-46 |
MS.gene05538 | MS.gene46857 | 0.880075 | 7.40E-70 | -1.69E-46 |
MS.gene059015 | MS.gene46857 | 0.800395 | 1.47E-48 | -1.69E-46 |
MS.gene060519 | MS.gene46857 | 0.813227 | 2.85E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46857.t1 | MTR_7g062720 | 94.697 | 132 | 7 | 0 | 1 | 132 | 1 | 132 | 7.04e-88 | 261 |
MS.gene46857.t1 | MTR_4g037355 | 72.656 | 128 | 23 | 3 | 151 | 278 | 1 | 116 | 2.97e-56 | 180 |
MS.gene46857.t1 | MTR_5g061150 | 62.500 | 120 | 45 | 0 | 27 | 146 | 17 | 136 | 2.11e-46 | 154 |
MS.gene46857.t1 | MTR_4g112730 | 75.000 | 64 | 16 | 0 | 138 | 201 | 1 | 64 | 1.75e-26 | 101 |
MS.gene46857.t1 | MTR_1g036690 | 63.014 | 73 | 17 | 2 | 271 | 343 | 5 | 67 | 7.96e-21 | 85.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 62 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGAGGCCCTTAACATTTC+TGG | 0.105015 | 7.4:+46592906 | MS.gene46857:CDS |
GCATCTCAACACAACCATTT+TGG | 0.150702 | 7.4:+46593482 | MS.gene46857:CDS |
TCTTAAGTGCTTCATTTATA+TGG | 0.216688 | 7.4:-46593058 | None:intergenic |
GATGCTGATTATGATATTTA+TGG | 0.234910 | 7.4:+46593830 | MS.gene46857:CDS |
ATCCAATCATACCTTGCTTT+TGG | 0.252009 | 7.4:-46593164 | None:intergenic |
GATACTACTCCTTTGGATAT+TGG | 0.253196 | 7.4:+46593860 | MS.gene46857:CDS |
TTTGTATACTTCAGAATTAT+AGG | 0.281074 | 7.4:-46593222 | None:intergenic |
TGTTGAGATGCATTCACTTC+AGG | 0.293409 | 7.4:-46593470 | None:intergenic |
TGCCATAAAAGAAGGAAATA+AGG | 0.335057 | 7.4:+46592992 | MS.gene46857:CDS |
AGTTGTTTCCAGAAATGTTA+AGG | 0.345031 | 7.4:-46592914 | None:intergenic |
CATTGTTCTGTTCAGCAATC+AGG | 0.346195 | 7.4:-46593397 | None:intergenic |
GACCACGAGCGCTCCCAAAA+TGG | 0.364677 | 7.4:-46593496 | None:intergenic |
CACCAGCAGGGCGAGCTTCA+TGG | 0.368055 | 7.4:-46593436 | None:intergenic |
CGCGGTCGCGGTCGTGGTCG+TGG | 0.378998 | 7.4:+46593530 | MS.gene46857:CDS |
GTTGTTTCCAGAAATGTTAA+GGG | 0.399743 | 7.4:-46592913 | None:intergenic |
TCCCAAAAGCAAGGTATGAT+TGG | 0.411264 | 7.4:+46593162 | MS.gene46857:CDS |
CTGGAAACAACTATTTGACT+TGG | 0.414379 | 7.4:+46592925 | MS.gene46857:CDS |
TACTTAGCTGCTGAAGGAAA+TGG | 0.418999 | 7.4:+46592966 | MS.gene46857:CDS |
TGAAAAGAATGAAAATGAAA+AGG | 0.423636 | 7.4:+46593640 | MS.gene46857:CDS |
GTTGAGATGCATTCACTTCA+GGG | 0.423894 | 7.4:-46593469 | None:intergenic |
TAAAGGTCAACCAAATGCTT+TGG | 0.429910 | 7.4:-46593743 | None:intergenic |
GGTCATGCCCACAATCCTAA+TGG | 0.437132 | 7.4:+46593575 | MS.gene46857:CDS |
CAGCAACAATACCGAGAAAA+GGG | 0.437176 | 7.4:+46593341 | MS.gene46857:CDS |
AACCATGAAGCTCGCCCTGC+TGG | 0.438159 | 7.4:+46593434 | MS.gene46857:CDS |
TGACATGGATACTACTCCTT+TGG | 0.439894 | 7.4:+46593853 | MS.gene46857:CDS |
GGGAATGGAGCTACACCAGC+AGG | 0.445287 | 7.4:-46593449 | None:intergenic |
GAAAAGAATGAAAATGAAAA+GGG | 0.449828 | 7.4:+46593641 | MS.gene46857:CDS |
CGTGGTCGCGGTCGCGGTCG+TGG | 0.450743 | 7.4:+46593524 | MS.gene46857:CDS |
CGTGGTCGTGGTCGCGGTCG+CGG | 0.452026 | 7.4:+46593518 | MS.gene46857:CDS |
TCTCTCAAAACTTCACTTTG+AGG | 0.457299 | 7.4:+46592890 | MS.gene46857:CDS |
ATGTCGTACTCCAAAGCATT+TGG | 0.465557 | 7.4:+46593733 | MS.gene46857:CDS |
TTTGGGAGCGCTCGTGGTCG+TGG | 0.467855 | 7.4:+46593500 | MS.gene46857:CDS |
TGAAAGATCCACTTGTGCTC+TGG | 0.468533 | 7.4:+46593096 | MS.gene46857:CDS |
AGCGCTCGTGGTCGTGGTCG+TGG | 0.471808 | 7.4:+46593506 | MS.gene46857:CDS |
TTTCTCGGTATTGTTGCTGC+AGG | 0.477208 | 7.4:-46593337 | None:intergenic |
AATATTCATGGTCGTGGTCG+TGG | 0.478042 | 7.4:+46593554 | MS.gene46857:CDS |
GCAGCAACAATACCGAGAAA+AGG | 0.481447 | 7.4:+46593340 | MS.gene46857:CDS |
ACTCATTATGCTTATAAAGA+TGG | 0.483040 | 7.4:+46593803 | MS.gene46857:CDS |
CGTGGTCGTGGAAATATTCA+TGG | 0.484623 | 7.4:+46593542 | MS.gene46857:CDS |
CGTGGTCGTGGTCGTGGTCG+CGG | 0.491270 | 7.4:+46593512 | MS.gene46857:CDS |
AGTTTATTCCAGAGCACAAG+TGG | 0.512360 | 7.4:-46593104 | None:intergenic |
AAAGTATCTGTTATCGATGT+GGG | 0.513971 | 7.4:+46593687 | MS.gene46857:CDS |
GATGCATTCACTTCAGGGAA+TGG | 0.514758 | 7.4:-46593464 | None:intergenic |
TTGTTGCTGCAGGAGCATAT+TGG | 0.522682 | 7.4:-46593327 | None:intergenic |
TAAGTACATTTCAGTATCTA+CGG | 0.532057 | 7.4:-46592949 | None:intergenic |
TGGAAACAACTATTTGACTT+GGG | 0.534823 | 7.4:+46592926 | MS.gene46857:CDS |
AATGGAGATGCCATAAAAGA+AGG | 0.547076 | 7.4:+46592984 | MS.gene46857:CDS |
CGTGGAAATATTCATGGTCG+TGG | 0.551910 | 7.4:+46593548 | MS.gene46857:CDS |
GAGCATATTGGATGCATGAA+AGG | 0.556835 | 7.4:-46593315 | None:intergenic |
AAGAATGAAAATGAAAAGGG+TGG | 0.569051 | 7.4:+46593644 | MS.gene46857:CDS |
GAAAGTATCTGTTATCGATG+TGG | 0.574435 | 7.4:+46593686 | MS.gene46857:CDS |
GAAATGTACTTAGCTGCTGA+AGG | 0.580070 | 7.4:+46592960 | MS.gene46857:CDS |
ACTTCTCAATTAGAATTGTG+TGG | 0.587587 | 7.4:+46593248 | MS.gene46857:CDS |
AAGAAATCACCAATATCCAA+AGG | 0.617484 | 7.4:-46593869 | None:intergenic |
TTATGATATTTATGGTGACA+TGG | 0.623711 | 7.4:+46593838 | MS.gene46857:CDS |
CTTCATTTATATGGTGACGA+AGG | 0.627090 | 7.4:-46593049 | None:intergenic |
CCATTATCCTCCCAAAAGCA+AGG | 0.629135 | 7.4:+46593153 | MS.gene46857:CDS |
AGTATCTGTTATCGATGTGG+GGG | 0.642580 | 7.4:+46593689 | MS.gene46857:CDS |
AAGTATCTGTTATCGATGTG+GGG | 0.643578 | 7.4:+46593688 | MS.gene46857:CDS |
GGAATGGAGCTACACCAGCA+GGG | 0.651331 | 7.4:-46593448 | None:intergenic |
AGCAACAATACCGAGAAAAG+GGG | 0.658431 | 7.4:+46593342 | MS.gene46857:CDS |
CAAGTGGATCTTTCACAGTG+AGG | 0.718603 | 7.4:-46593088 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACTAAAAAACAAAGGAAAAA+TGG | + | chr7.4:46593775-46593794 | MS.gene46857:CDS | 20.0% |
!! | GAAAAGAATGAAAATGAAAA+GGG | + | chr7.4:46593641-46593660 | MS.gene46857:CDS | 20.0% |
!! | TGAAAAGAATGAAAATGAAA+AGG | + | chr7.4:46593640-46593659 | MS.gene46857:CDS | 20.0% |
!! | TTTGTATACTTCAGAATTAT+AGG | - | chr7.4:46593225-46593244 | None:intergenic | 20.0% |
!!! | TTTCATTATTTTTCCACTTT+TGG | - | chr7.4:46593625-46593644 | None:intergenic | 20.0% |
! | ACTCATTATGCTTATAAAGA+TGG | + | chr7.4:46593803-46593822 | MS.gene46857:CDS | 25.0% |
! | TAAGTACATTTCAGTATCTA+CGG | - | chr7.4:46592952-46592971 | None:intergenic | 25.0% |
! | TCTTAAGTGCTTCATTTATA+TGG | - | chr7.4:46593061-46593080 | None:intergenic | 25.0% |
! | TTATGATATTTATGGTGACA+TGG | + | chr7.4:46593838-46593857 | MS.gene46857:CDS | 25.0% |
!! | GATGCTGATTATGATATTTA+TGG | + | chr7.4:46593830-46593849 | MS.gene46857:CDS | 25.0% |
!!! | TTTTTAGTGATTGCTGATAA+AGG | - | chr7.4:46593763-46593782 | None:intergenic | 25.0% |
AAGAAATCACCAATATCCAA+AGG | - | chr7.4:46593872-46593891 | None:intergenic | 30.0% | |
AAGAATGAAAATGAAAAGGG+TGG | + | chr7.4:46593644-46593663 | MS.gene46857:CDS | 30.0% | |
ACTTCTCAATTAGAATTGTG+TGG | + | chr7.4:46593248-46593267 | MS.gene46857:CDS | 30.0% | |
CAGCAATCACTAAAAAACAA+AGG | + | chr7.4:46593767-46593786 | MS.gene46857:CDS | 30.0% | |
TGCCATAAAAGAAGGAAATA+AGG | + | chr7.4:46592992-46593011 | MS.gene46857:CDS | 30.0% | |
TGGTGAAAAAATAACAGATG+CGG | + | chr7.4:46593268-46593287 | MS.gene46857:CDS | 30.0% | |
! | AAAGTATCTGTTATCGATGT+GGG | + | chr7.4:46593687-46593706 | MS.gene46857:CDS | 30.0% |
! | AGTTGTTTCCAGAAATGTTA+AGG | - | chr7.4:46592917-46592936 | None:intergenic | 30.0% |
! | GAATTTTCCATTAGGATTGT+GGG | - | chr7.4:46593585-46593604 | None:intergenic | 30.0% |
! | GTTGTTTCCAGAAATGTTAA+GGG | - | chr7.4:46592916-46592935 | None:intergenic | 30.0% |
! | TGAATTTTCCATTAGGATTG+TGG | - | chr7.4:46593586-46593605 | None:intergenic | 30.0% |
! | TGGAAACAACTATTTGACTT+GGG | + | chr7.4:46592926-46592945 | MS.gene46857:CDS | 30.0% |
!! | ATTTTTCAAACCCCTTTTCT+CGG | - | chr7.4:46593355-46593374 | None:intergenic | 30.0% |
!! | CATTATTTTTCCACTTTTGG+TGG | - | chr7.4:46593622-46593641 | None:intergenic | 30.0% |
!!! | TGCCTTATTTCCTTCTTTTA+TGG | - | chr7.4:46592997-46593016 | None:intergenic | 30.0% |
AAGTATCTGTTATCGATGTG+GGG | + | chr7.4:46593688-46593707 | MS.gene46857:CDS | 35.0% | |
AATGGAGATGCCATAAAAGA+AGG | + | chr7.4:46592984-46593003 | MS.gene46857:CDS | 35.0% | |
CTGGAAACAACTATTTGACT+TGG | + | chr7.4:46592925-46592944 | MS.gene46857:CDS | 35.0% | |
GATACTACTCCTTTGGATAT+TGG | + | chr7.4:46593860-46593879 | MS.gene46857:CDS | 35.0% | |
TAAAGGTCAACCAAATGCTT+TGG | - | chr7.4:46593746-46593765 | None:intergenic | 35.0% | |
TCTCTCAAAACTTCACTTTG+AGG | + | chr7.4:46592890-46592909 | MS.gene46857:CDS | 35.0% | |
! | ATCCAATCATACCTTGCTTT+TGG | - | chr7.4:46593167-46593186 | None:intergenic | 35.0% |
! | CATCTCAACACAACCATTTT+GGG | + | chr7.4:46593483-46593502 | MS.gene46857:CDS | 35.0% |
! | CTTCATTTATATGGTGACGA+AGG | - | chr7.4:46593052-46593071 | None:intergenic | 35.0% |
!! | GAAAGTATCTGTTATCGATG+TGG | + | chr7.4:46593686-46593705 | MS.gene46857:CDS | 35.0% |
!! | TCCAATCATACCTTGCTTTT+GGG | - | chr7.4:46593166-46593185 | None:intergenic | 35.0% |
!! | TCCACTTTTGGTGGAAAAAT+GGG | - | chr7.4:46593613-46593632 | None:intergenic | 35.0% |
!! | TTCCACTTTTGGTGGAAAAA+TGG | - | chr7.4:46593614-46593633 | None:intergenic | 35.0% |
!!! | TGCTTTTGCTTTTTGTTGCT+CGG | - | chr7.4:46593021-46593040 | None:intergenic | 35.0% |
AGCAACAATACCGAGAAAAG+GGG | + | chr7.4:46593342-46593361 | MS.gene46857:CDS | 40.0% | |
AGTATCTGTTATCGATGTGG+GGG | + | chr7.4:46593689-46593708 | MS.gene46857:CDS | 40.0% | |
AGTTTATTCCAGAGCACAAG+TGG | - | chr7.4:46593107-46593126 | None:intergenic | 40.0% | |
CAGCAACAATACCGAGAAAA+GGG | + | chr7.4:46593341-46593360 | MS.gene46857:CDS | 40.0% | |
CATTGTTCTGTTCAGCAATC+AGG | - | chr7.4:46593400-46593419 | None:intergenic | 40.0% | |
GAAATGTACTTAGCTGCTGA+AGG | + | chr7.4:46592960-46592979 | MS.gene46857:CDS | 40.0% | |
GAGCATATTGGATGCATGAA+AGG | - | chr7.4:46593318-46593337 | None:intergenic | 40.0% | |
GTTGAGATGCATTCACTTCA+GGG | - | chr7.4:46593472-46593491 | None:intergenic | 40.0% | |
TACTTAGCTGCTGAAGGAAA+TGG | + | chr7.4:46592966-46592985 | MS.gene46857:CDS | 40.0% | |
TCCCAAAAGCAAGGTATGAT+TGG | + | chr7.4:46593162-46593181 | MS.gene46857:CDS | 40.0% | |
TGACATGGATACTACTCCTT+TGG | + | chr7.4:46593853-46593872 | MS.gene46857:CDS | 40.0% | |
TGTTGAGATGCATTCACTTC+AGG | - | chr7.4:46593473-46593492 | None:intergenic | 40.0% | |
! | ATGTCGTACTCCAAAGCATT+TGG | + | chr7.4:46593733-46593752 | MS.gene46857:CDS | 40.0% |
! | GCATCTCAACACAACCATTT+TGG | + | chr7.4:46593482-46593501 | MS.gene46857:CDS | 40.0% |
! | TTTGAGGCCCTTAACATTTC+TGG | + | chr7.4:46592906-46592925 | MS.gene46857:CDS | 40.0% |
!! | AATCATACCTTGCTTTTGGG+AGG | - | chr7.4:46593163-46593182 | None:intergenic | 40.0% |
!! | CCACTTTTGGTGGAAAAATG+GGG | - | chr7.4:46593612-46593631 | None:intergenic | 40.0% |
!!! | GGGGTTCTGAATTTTCCATT+AGG | - | chr7.4:46593593-46593612 | None:intergenic | 40.0% |
AATATTCATGGTCGTGGTCG+TGG | + | chr7.4:46593554-46593573 | MS.gene46857:CDS | 45.0% | |
CAAGTGGATCTTTCACAGTG+AGG | - | chr7.4:46593091-46593110 | None:intergenic | 45.0% | |
CCATTATCCTCCCAAAAGCA+AGG | + | chr7.4:46593153-46593172 | MS.gene46857:CDS | 45.0% | |
CGTGGAAATATTCATGGTCG+TGG | + | chr7.4:46593548-46593567 | MS.gene46857:CDS | 45.0% | |
CGTGGTCGTGGAAATATTCA+TGG | + | chr7.4:46593542-46593561 | MS.gene46857:CDS | 45.0% | |
GATGCATTCACTTCAGGGAA+TGG | - | chr7.4:46593467-46593486 | None:intergenic | 45.0% | |
GCAGCAACAATACCGAGAAA+AGG | + | chr7.4:46593340-46593359 | MS.gene46857:CDS | 45.0% | |
TGAAAGATCCACTTGTGCTC+TGG | + | chr7.4:46593096-46593115 | MS.gene46857:CDS | 45.0% | |
TTTCTCGGTATTGTTGCTGC+AGG | - | chr7.4:46593340-46593359 | None:intergenic | 45.0% | |
! | TTGTTGCTGCAGGAGCATAT+TGG | - | chr7.4:46593330-46593349 | None:intergenic | 45.0% |
!! | CCCCATTTTTCCACCAAAAG+TGG | + | chr7.4:46593609-46593628 | MS.gene46857:CDS | 45.0% |
!! | CCTTGCTTTTGGGAGGATAA+TGG | - | chr7.4:46593156-46593175 | None:intergenic | 45.0% |
GGTCATGCCCACAATCCTAA+TGG | + | chr7.4:46593575-46593594 | MS.gene46857:CDS | 50.0% | |
TGTTATCGATGTGGGGGCAA+AGG | + | chr7.4:46593695-46593714 | MS.gene46857:CDS | 50.0% | |
GATGTGGGGGCAAAGGTCAT+TGG | + | chr7.4:46593702-46593721 | MS.gene46857:CDS | 55.0% | |
GGAATGGAGCTACACCAGCA+GGG | - | chr7.4:46593451-46593470 | None:intergenic | 55.0% | |
!!! | AACCATTTTGGGAGCGCTCG+TGG | + | chr7.4:46593494-46593513 | MS.gene46857:CDS | 55.0% |
AACCATGAAGCTCGCCCTGC+TGG | + | chr7.4:46593434-46593453 | MS.gene46857:CDS | 60.0% | |
GACCACGAGCGCTCCCAAAA+TGG | - | chr7.4:46593499-46593518 | None:intergenic | 60.0% | |
GGGAATGGAGCTACACCAGC+AGG | - | chr7.4:46593452-46593471 | None:intergenic | 60.0% | |
CACCAGCAGGGCGAGCTTCA+TGG | - | chr7.4:46593439-46593458 | None:intergenic | 65.0% | |
!! | TTTGGGAGCGCTCGTGGTCG+TGG | + | chr7.4:46593500-46593519 | MS.gene46857:CDS | 65.0% |
AGCGCTCGTGGTCGTGGTCG+TGG | + | chr7.4:46593506-46593525 | MS.gene46857:CDS | 70.0% | |
CGTGGTCGTGGTCGTGGTCG+CGG | + | chr7.4:46593512-46593531 | MS.gene46857:CDS | 70.0% | |
CGTGGTCGTGGTCGCGGTCG+CGG | + | chr7.4:46593518-46593537 | MS.gene46857:CDS | 75.0% | |
! | CGCGGTCGCGGTCGTGGTCG+TGG | + | chr7.4:46593530-46593549 | MS.gene46857:CDS | 80.0% |
! | CGTGGTCGCGGTCGCGGTCG+TGG | + | chr7.4:46593524-46593543 | MS.gene46857:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 46592882 | 46593916 | 46592882 | ID=MS.gene46857 |
chr7.4 | mRNA | 46592882 | 46593916 | 46592882 | ID=MS.gene46857.t1;Parent=MS.gene46857 |
chr7.4 | exon | 46592882 | 46593916 | 46592882 | ID=MS.gene46857.t1.exon1;Parent=MS.gene46857.t1 |
chr7.4 | CDS | 46592882 | 46593916 | 46592882 | ID=cds.MS.gene46857.t1;Parent=MS.gene46857.t1 |
Gene Sequence |
Protein sequence |