Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46909.t1 | XP_003609196.1 | 99.2 | 510 | 4 | 0 | 1 | 510 | 1 | 510 | 7.20E-285 | 989.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46909.t1 | Q93YV6 | 62.6 | 506 | 183 | 3 | 1 | 506 | 1 | 500 | 8.0e-184 | 644.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46909.t1 | G7JU51 | 99.2 | 510 | 4 | 0 | 1 | 510 | 1 | 510 | 5.2e-285 | 989.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene46909 | 0.814093 | 1.84E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene46909 | 0.803204 | 3.90E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene46909 | 0.807797 | 4.24E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene46909 | 0.8633 | 2.75E-64 | -1.69E-46 |
| MS.gene053536 | MS.gene46909 | 0.803262 | 3.79E-49 | -1.69E-46 |
| MS.gene053538 | MS.gene46909 | 0.801347 | 9.40E-49 | -1.69E-46 |
| MS.gene054550 | MS.gene46909 | 0.800037 | 1.74E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene46909 | 0.840754 | 7.19E-58 | -1.69E-46 |
| MS.gene055465 | MS.gene46909 | 0.829416 | 5.21E-55 | -1.69E-46 |
| MS.gene055466 | MS.gene46909 | 0.80274 | 4.86E-49 | -1.69E-46 |
| MS.gene055467 | MS.gene46909 | 0.800808 | 1.21E-48 | -1.69E-46 |
| MS.gene055537 | MS.gene46909 | 0.837819 | 4.15E-57 | -1.69E-46 |
| MS.gene055580 | MS.gene46909 | -0.800302 | 1.54E-48 | -1.69E-46 |
| MS.gene055891 | MS.gene46909 | 0.803957 | 2.72E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene46909 | 0.820306 | 7.36E-53 | -1.69E-46 |
| MS.gene059154 | MS.gene46909 | 0.828617 | 8.14E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46909.t1 | MTR_4g113020 | 99.216 | 510 | 4 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1047 |
| MS.gene46909.t1 | MTR_4g113020 | 99.742 | 388 | 1 | 0 | 1 | 388 | 1 | 388 | 0.0 | 801 |
| MS.gene46909.t1 | MTR_1g011460 | 60.080 | 501 | 184 | 6 | 1 | 497 | 1 | 489 | 0.0 | 642 |
| MS.gene46909.t1 | MTR_3g107980 | 59.438 | 498 | 188 | 6 | 1 | 491 | 1 | 491 | 0.0 | 627 |
| MS.gene46909.t1 | MTR_6g022720 | 52.590 | 502 | 210 | 5 | 1 | 483 | 1 | 493 | 0.0 | 534 |
| MS.gene46909.t1 | MTR_3g080070 | 50.838 | 537 | 232 | 4 | 1 | 508 | 1 | 534 | 0.0 | 532 |
| MS.gene46909.t1 | MTR_3g086010 | 51.200 | 500 | 228 | 4 | 1 | 484 | 1 | 500 | 0.0 | 525 |
| MS.gene46909.t1 | MTR_1g062950 | 53.376 | 474 | 205 | 7 | 15 | 484 | 15 | 476 | 3.35e-176 | 504 |
| MS.gene46909.t1 | MTR_1g111570 | 48.975 | 488 | 229 | 5 | 5 | 484 | 1 | 476 | 5.74e-171 | 491 |
| MS.gene46909.t1 | MTR_6g022720 | 53.623 | 414 | 164 | 5 | 1 | 395 | 1 | 405 | 5.28e-152 | 440 |
| MS.gene46909.t1 | MTR_7g102900 | 51.823 | 384 | 162 | 6 | 11 | 391 | 3 | 366 | 6.32e-139 | 405 |
| MS.gene46909.t1 | MTR_1g112940 | 39.667 | 421 | 245 | 4 | 82 | 497 | 31 | 447 | 8.67e-111 | 336 |
| MS.gene46909.t1 | MTR_7g102920 | 53.774 | 106 | 43 | 1 | 384 | 483 | 13 | 118 | 9.13e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46909.t1 | AT5G25510 | 62.451 | 506 | 184 | 3 | 1 | 506 | 1 | 500 | 0.0 | 673 |
| MS.gene46909.t1 | AT4G15415 | 54.949 | 495 | 213 | 4 | 1 | 485 | 1 | 495 | 0.0 | 555 |
| MS.gene46909.t1 | AT4G15415 | 54.949 | 495 | 213 | 4 | 1 | 485 | 1 | 495 | 0.0 | 555 |
| MS.gene46909.t1 | AT4G15415 | 54.949 | 495 | 213 | 4 | 1 | 485 | 1 | 495 | 0.0 | 555 |
| MS.gene46909.t1 | AT4G15415 | 54.949 | 495 | 213 | 4 | 1 | 485 | 1 | 495 | 0.0 | 555 |
| MS.gene46909.t1 | AT3G26020 | 54.297 | 512 | 194 | 5 | 1 | 481 | 1 | 503 | 0.0 | 546 |
| MS.gene46909.t1 | AT3G26020 | 54.297 | 512 | 194 | 5 | 1 | 481 | 1 | 503 | 0.0 | 546 |
| MS.gene46909.t1 | AT3G26020 | 54.297 | 512 | 194 | 5 | 1 | 481 | 1 | 503 | 0.0 | 546 |
| MS.gene46909.t1 | AT3G26020 | 54.297 | 512 | 194 | 5 | 1 | 481 | 1 | 503 | 0.0 | 546 |
| MS.gene46909.t1 | AT1G13460 | 60.870 | 414 | 159 | 1 | 77 | 487 | 75 | 488 | 0.0 | 544 |
| MS.gene46909.t1 | AT1G13460 | 60.870 | 414 | 159 | 1 | 77 | 487 | 75 | 488 | 0.0 | 544 |
| MS.gene46909.t1 | AT3G21650 | 53.269 | 520 | 204 | 5 | 1 | 485 | 1 | 516 | 0.0 | 543 |
| MS.gene46909.t1 | AT3G21650 | 53.269 | 520 | 204 | 5 | 1 | 485 | 1 | 516 | 0.0 | 543 |
| MS.gene46909.t1 | AT3G09880 | 52.918 | 497 | 226 | 3 | 1 | 494 | 1 | 492 | 0.0 | 528 |
| MS.gene46909.t1 | AT5G03470 | 51.434 | 488 | 225 | 4 | 1 | 482 | 1 | 482 | 0.0 | 522 |
| MS.gene46909.t1 | AT3G26030 | 50.710 | 493 | 218 | 9 | 1 | 486 | 1 | 475 | 1.29e-169 | 488 |
| MS.gene46909.t1 | AT3G26020 | 46.250 | 560 | 184 | 7 | 1 | 481 | 1 | 522 | 1.06e-159 | 464 |
| MS.gene46909.t1 | AT3G54930 | 51.942 | 412 | 193 | 1 | 78 | 484 | 82 | 493 | 2.16e-157 | 457 |
| MS.gene46909.t1 | AT3G54930 | 51.942 | 412 | 193 | 1 | 78 | 484 | 82 | 493 | 2.16e-157 | 457 |
| MS.gene46909.t1 | AT4G15415 | 56.281 | 398 | 164 | 4 | 1 | 388 | 1 | 398 | 2.45e-155 | 450 |
| MS.gene46909.t1 | AT3G26020 | 46.409 | 543 | 191 | 9 | 1 | 481 | 1 | 505 | 9.22e-153 | 446 |
| MS.gene46909.t1 | AT3G26020 | 46.409 | 543 | 191 | 9 | 1 | 481 | 1 | 505 | 9.22e-153 | 446 |
| MS.gene46909.t1 | AT3G26020 | 46.409 | 543 | 191 | 9 | 1 | 481 | 1 | 505 | 9.22e-153 | 446 |
| MS.gene46909.t1 | AT3G54930 | 52.215 | 316 | 146 | 1 | 78 | 388 | 82 | 397 | 1.03e-115 | 347 |
Find 93 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAACAGATTTCCTTATAAA+AGG | 0.202511 | 8.2:-15622857 | None:intergenic |
| GAATCTGATGAGTCGGATTT+TGG | 0.207638 | 8.2:-15622167 | None:intergenic |
| ACAGTTCTGCATAGAATCTA+TGG | 0.252421 | 8.2:+15622815 | MS.gene46909:CDS |
| GGCAATAGTACTACTAGTTT+TGG | 0.252801 | 8.2:+15622206 | MS.gene46909:CDS |
| TAATGGAATTGCTGAGCTTT+TGG | 0.252902 | 8.2:+15622919 | MS.gene46909:CDS |
| ATGATAAATACCAATAGATT+TGG | 0.253333 | 8.2:-15623035 | None:intergenic |
| GAGTGAGTTGGAAGAGGTTT+TGG | 0.272535 | 8.2:+15623180 | MS.gene46909:CDS |
| GTGTGCAACCAATTTGTTTA+GGG | 0.286986 | 8.2:+15622562 | MS.gene46909:CDS |
| TGTTCTGTACAGTTCTTATC+AGG | 0.296622 | 8.2:-15622443 | None:intergenic |
| AACATTTAATTTGCTTGAAA+TGG | 0.301664 | 8.2:-15622261 | None:intergenic |
| TCATGAACATTAGCTCCTTT+TGG | 0.304127 | 8.2:-15623159 | None:intergenic |
| TTATGTTCTGAGTCAGGTTC+AGG | 0.305779 | 8.2:-15624028 | None:intergenic |
| ATTGGTTAGCTCAGTGATAA+AGG | 0.320886 | 8.2:+15623105 | MS.gene46909:CDS |
| TGTGTGCAACCAATTTGTTT+AGG | 0.324252 | 8.2:+15622561 | MS.gene46909:CDS |
| CGCTGGTGGCGGCTTCTTCA+AGG | 0.337496 | 8.2:-15624166 | None:intergenic |
| GATTCTGCAAAGAGTGATTC+TGG | 0.347501 | 8.2:+15622185 | MS.gene46909:CDS |
| ACACCAGCATTCATGCTTGC+AGG | 0.350797 | 8.2:-15622311 | None:intergenic |
| CGGAACGAGCTCATTTGTTA+TGG | 0.366378 | 8.2:+15623898 | MS.gene46909:CDS |
| TTGCACAAACCCAAATCTAT+TGG | 0.370970 | 8.2:+15623025 | MS.gene46909:CDS |
| TCTTTCTTATGTTCTGAGTC+AGG | 0.372770 | 8.2:-15624034 | None:intergenic |
| GCAAATTAAATGTTGTGAAA+AGG | 0.378108 | 8.2:+15622270 | MS.gene46909:CDS |
| ACAAAGGCACCATAACCTTC+TGG | 0.379726 | 8.2:-15623225 | None:intergenic |
| TGGGAAAACCCTAAACAAAT+TGG | 0.379876 | 8.2:-15622570 | None:intergenic |
| TTCGAAACCGAGCGGCATAA+TGG | 0.381145 | 8.2:+15622902 | MS.gene46909:CDS |
| TGATAAATACCAATAGATTT+GGG | 0.382190 | 8.2:-15623034 | None:intergenic |
| ATGGGAAATTCATGGTTCAT+AGG | 0.411237 | 8.2:+15622834 | MS.gene46909:CDS |
| GTAGATCATAAACAACTTGC+AGG | 0.412759 | 8.2:-15622664 | None:intergenic |
| CAAATTAAATGTTGTGAAAA+GGG | 0.416656 | 8.2:+15622271 | MS.gene46909:CDS |
| GGTGCCTTTGTTTCGACGGT+TGG | 0.420407 | 8.2:+15623237 | MS.gene46909:CDS |
| CATAGATAAGGATCAAAGAT+TGG | 0.423129 | 8.2:+15623087 | MS.gene46909:CDS |
| TTCAAACAATCTCTTTCTCT+AGG | 0.433235 | 8.2:-15622791 | None:intergenic |
| TAGGGTCTTCAGAATCAAAA+AGG | 0.434877 | 8.2:-15622772 | None:intergenic |
| AAGAAAGATGCTATCTCAAA+TGG | 0.436356 | 8.2:+15624049 | MS.gene46909:CDS |
| CCTGGTAATGCGAGCTGGTA+AGG | 0.440760 | 8.2:-15623267 | None:intergenic |
| CATTGTACAGTTCATAGATA+AGG | 0.447391 | 8.2:+15623075 | MS.gene46909:CDS |
| TTACACAACGCAGCGATTGC+TGG | 0.448320 | 8.2:-15622536 | None:intergenic |
| CCTTACCAGCTCGCATTACC+AGG | 0.449673 | 8.2:+15623267 | MS.gene46909:CDS |
| GTCCAATCCGTAGGCGGTGG+TGG | 0.454679 | 8.2:+15624188 | MS.gene46909:CDS |
| AGCCTGTGTTTGATCCTGCT+TGG | 0.461055 | 8.2:+15622636 | MS.gene46909:CDS |
| TATCATAAACTTTGCAGCAA+AGG | 0.472991 | 8.2:-15622412 | None:intergenic |
| GGCTGAATTCCAGAAGGTTA+TGG | 0.473285 | 8.2:+15623216 | MS.gene46909:CDS |
| TAAAGGGACTATTGAAGTAT+TGG | 0.483354 | 8.2:+15623122 | MS.gene46909:CDS |
| CCACTACTCGAACGAAACTT+AGG | 0.485337 | 8.2:-15622593 | None:intergenic |
| TTGGTTAGCTCAGTGATAAA+GGG | 0.485661 | 8.2:+15623106 | MS.gene46909:CDS |
| CACCACCACCGCCTACGGAT+TGG | 0.487683 | 8.2:-15624190 | None:intergenic |
| GTGCTCTTCTTTCAATGGCA+AGG | 0.488424 | 8.2:-15622972 | None:intergenic |
| CTTCCTCTTCGATCTTGCGT+TGG | 0.492096 | 8.2:-15624094 | None:intergenic |
| TAGCAGTAGCTGGTTTCACT+TGG | 0.494863 | 8.2:-15624223 | None:intergenic |
| ACCGAGCATGTAGCAGTAGC+TGG | 0.494955 | 8.2:-15624233 | None:intergenic |
| TAGAATCTATGGGAAATTCA+TGG | 0.495390 | 8.2:+15622826 | MS.gene46909:CDS |
| TACATAACTCACAGAATCAC+TGG | 0.498799 | 8.2:+15623994 | MS.gene46909:CDS |
| CGAGAGGCAGAATCACTTGT+CGG | 0.511926 | 8.2:-15623956 | None:intergenic |
| CCTAAGTTTCGTTCGAGTAG+TGG | 0.514270 | 8.2:+15622593 | MS.gene46909:CDS |
| GTATTTCAGTGTACAAATGT+TGG | 0.518089 | 8.2:+15622233 | MS.gene46909:CDS |
| AATATCACCACCACCGCCTA+CGG | 0.518328 | 8.2:-15624195 | None:intergenic |
| GTTCATGAGTGAGTTGGAAG+AGG | 0.521832 | 8.2:+15623174 | MS.gene46909:CDS |
| ATAGATTTGGGTTTGTGCAA+AGG | 0.523747 | 8.2:-15623022 | None:intergenic |
| TCAAACAATCTCTTTCTCTA+GGG | 0.524186 | 8.2:-15622790 | None:intergenic |
| TTATGGTGCCTTTGTTTCGA+CGG | 0.533773 | 8.2:+15623233 | MS.gene46909:CDS |
| TACGGATTGGACGCTGGTGG+CGG | 0.536186 | 8.2:-15624177 | None:intergenic |
| CTGTTAGCAATATCATCTAC+CGG | 0.536734 | 8.2:+15622873 | MS.gene46909:CDS |
| AGCAATTCCATTATGCCGCT+CGG | 0.539353 | 8.2:-15622909 | None:intergenic |
| GCCAGTTACTAATAGCCAAA+AGG | 0.540094 | 8.2:+15623144 | MS.gene46909:CDS |
| AGCGTCCAATCCGTAGGCGG+TGG | 0.540571 | 8.2:+15624185 | MS.gene46909:CDS |
| GCTCGGTTTCGAAAACAAAC+CGG | 0.543787 | 8.2:-15622892 | None:intergenic |
| TTTCCTGCAAGCATGAATGC+TGG | 0.544053 | 8.2:+15622308 | MS.gene46909:CDS |
| AACAACCTGGTAATGCGAGC+TGG | 0.545399 | 8.2:-15623272 | None:intergenic |
| ACCAGCTACTGCTACATGCT+CGG | 0.547168 | 8.2:+15624232 | MS.gene46909:CDS |
| CTTTGCAGAATCTGATGAGT+CGG | 0.547663 | 8.2:-15622174 | None:intergenic |
| GCTAATGTTCATGAGTGAGT+TGG | 0.552985 | 8.2:+15623168 | MS.gene46909:CDS |
| CTGAGAGGCGAAGAATAACA+TGG | 0.555313 | 8.2:+15624138 | MS.gene46909:CDS |
| CAAGCCAACCGTCGAAACAA+AGG | 0.561984 | 8.2:-15623241 | None:intergenic |
| CAGTTCTGCATAGAATCTAT+GGG | 0.572378 | 8.2:+15622816 | MS.gene46909:CDS |
| AAGTTTCGTTCGAGTAGTGG+TGG | 0.590711 | 8.2:+15622596 | MS.gene46909:CDS |
| CTACTCGAACGAAACTTAGG+TGG | 0.596175 | 8.2:-15622590 | None:intergenic |
| ACCGCCTACGGATTGGACGC+TGG | 0.602235 | 8.2:-15624183 | None:intergenic |
| ACATCTTTGAACGATAGAGA+AGG | 0.604949 | 8.2:-15622347 | None:intergenic |
| ACTTGCAGGTGAGACCAAGC+AGG | 0.619708 | 8.2:-15622650 | None:intergenic |
| TACTCGAACGAAACTTAGGT+GGG | 0.627591 | 8.2:-15622589 | None:intergenic |
| CATCTTTGAACGATAGAGAA+GGG | 0.631730 | 8.2:-15622346 | None:intergenic |
| AACAAAAGCATGATCTACGT+GGG | 0.634366 | 8.2:-15622735 | None:intergenic |
| ACCAGCGTCCAATCCGTAGG+CGG | 0.634379 | 8.2:+15624182 | MS.gene46909:CDS |
| AAACAAAAGCATGATCTACG+TGG | 0.636662 | 8.2:-15622736 | None:intergenic |
| GCCACCAGCGTCCAATCCGT+AGG | 0.653077 | 8.2:+15624179 | MS.gene46909:CDS |
| GATGCTATCTCAAATGGACG+AGG | 0.659273 | 8.2:+15624055 | MS.gene46909:CDS |
| TAGCATGGCTGAATTCCAGA+AGG | 0.663321 | 8.2:+15623210 | MS.gene46909:CDS |
| GCCTACGGATTGGACGCTGG+TGG | 0.664134 | 8.2:-15624180 | None:intergenic |
| CAGATGAAACAAAATCAACA+AGG | 0.673447 | 8.2:-15622493 | None:intergenic |
| ATGCCAACGCAAGATCGAAG+AGG | 0.677288 | 8.2:+15624091 | MS.gene46909:CDS |
| TGAGAGGCGAAGAATAACAT+GGG | 0.696192 | 8.2:+15624139 | MS.gene46909:CDS |
| GACCAAGCAGGATCAAACAC+AGG | 0.696221 | 8.2:-15622638 | None:intergenic |
| ACAAGTGCTGAGAACACGAG+AGG | 0.732134 | 8.2:-15623972 | None:intergenic |
| AATCAAGTGATGTAGCTGAG+AGG | 0.735001 | 8.2:+15624123 | MS.gene46909:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTATAACAAAAGATAAAAT+AGG | - | chr8.2:15623562-15623581 | None:intergenic | 15.0% |
| !! | ATGATAAATACCAATAGATT+TGG | - | chr8.2:15623038-15623057 | None:intergenic | 20.0% |
| !! | CAAATTAAATGTTGTGAAAA+GGG | + | chr8.2:15622271-15622290 | MS.gene46909:CDS | 20.0% |
| !! | TGATAAATACCAATAGATTT+GGG | - | chr8.2:15623037-15623056 | None:intergenic | 20.0% |
| !! | TTAAGTAACTATAAATTGCA+AGG | - | chr8.2:15623802-15623821 | None:intergenic | 20.0% |
| !!! | AACATTTAATTTGCTTGAAA+TGG | - | chr8.2:15622264-15622283 | None:intergenic | 20.0% |
| ! | AACAACTTATGAAATGTCAT+AGG | - | chr8.2:15623465-15623484 | None:intergenic | 25.0% |
| ! | AAGAACTTATGAGACTATTT+GGG | + | chr8.2:15623422-15623441 | MS.gene46909:intron | 25.0% |
| ! | CATATGAAATGCTTAGATAT+TGG | - | chr8.2:15623767-15623786 | None:intergenic | 25.0% |
| ! | CTAACAGATTTCCTTATAAA+AGG | - | chr8.2:15622860-15622879 | None:intergenic | 25.0% |
| ! | GCAAATTAAATGTTGTGAAA+AGG | + | chr8.2:15622270-15622289 | MS.gene46909:CDS | 25.0% |
| ! | TAAGAACTTATGAGACTATT+TGG | + | chr8.2:15623421-15623440 | MS.gene46909:intron | 25.0% |
| !! | AAACAGCTTGTAACTTTTTA+TGG | + | chr8.2:15623524-15623543 | MS.gene46909:intron | 25.0% |
| !! | ATATTTTCTTGTGATTGTTC+AGG | + | chr8.2:15623872-15623891 | MS.gene46909:intron | 25.0% |
| !!! | AAGAGCACAAAATATTTTTG+TGG | + | chr8.2:15622987-15623006 | MS.gene46909:CDS | 25.0% |
| AACAAACTGTTTATCCAAAC+TGG | + | chr8.2:15623638-15623657 | MS.gene46909:intron | 30.0% | |
| AAGAAAGATGCTATCTCAAA+TGG | + | chr8.2:15624049-15624068 | MS.gene46909:CDS | 30.0% | |
| CAAACAGATACTAATGTACA+AGG | - | chr8.2:15623371-15623390 | None:intergenic | 30.0% | |
| CAGATGAAACAAAATCAACA+AGG | - | chr8.2:15622496-15622515 | None:intergenic | 30.0% | |
| CATAGATAAGGATCAAAGAT+TGG | + | chr8.2:15623087-15623106 | MS.gene46909:CDS | 30.0% | |
| CATTGTACAGTTCATAGATA+AGG | + | chr8.2:15623075-15623094 | MS.gene46909:CDS | 30.0% | |
| CTTGTACATTAGTATCTGTT+TGG | + | chr8.2:15623369-15623388 | MS.gene46909:intron | 30.0% | |
| GTATTTCAGTGTACAAATGT+TGG | + | chr8.2:15622233-15622252 | MS.gene46909:CDS | 30.0% | |
| TAAAGGGACTATTGAAGTAT+TGG | + | chr8.2:15623122-15623141 | MS.gene46909:CDS | 30.0% | |
| TAGAATCTATGGGAAATTCA+TGG | + | chr8.2:15622826-15622845 | MS.gene46909:CDS | 30.0% | |
| TATCATAAACTTTGCAGCAA+AGG | - | chr8.2:15622415-15622434 | None:intergenic | 30.0% | |
| TCAAACAATCTCTTTCTCTA+GGG | - | chr8.2:15622793-15622812 | None:intergenic | 30.0% | |
| TGAGGATATTGGATTACAAA+TGG | + | chr8.2:15623668-15623687 | MS.gene46909:intron | 30.0% | |
| TTCAAACAATCTCTTTCTCT+AGG | - | chr8.2:15622794-15622813 | None:intergenic | 30.0% | |
| TTTGTAATCCAATATCCTCA+TGG | - | chr8.2:15623668-15623687 | None:intergenic | 30.0% | |
| ! | ATTTTGTGCTCTTCTTTCAA+TGG | - | chr8.2:15622980-15622999 | None:intergenic | 30.0% |
| !! | GCACAAAATATTTTTGTGGA+AGG | + | chr8.2:15622991-15623010 | MS.gene46909:CDS | 30.0% |
| !! | TGATTTTGTTTCATCTGGTT+CGG | + | chr8.2:15622499-15622518 | MS.gene46909:CDS | 30.0% |
| !!! | ATTTTTGGGAGTGTTATTAG+TGG | + | chr8.2:15622944-15622963 | MS.gene46909:CDS | 30.0% |
| !!! | CTTGTTGATTTTGTTTCATC+TGG | + | chr8.2:15622494-15622513 | MS.gene46909:CDS | 30.0% |
| ACAGTTCTGCATAGAATCTA+TGG | + | chr8.2:15622815-15622834 | MS.gene46909:CDS | 35.0% | |
| ACATCTTTGAACGATAGAGA+AGG | - | chr8.2:15622350-15622369 | None:intergenic | 35.0% | |
| ATGGGAAATTCATGGTTCAT+AGG | + | chr8.2:15622834-15622853 | MS.gene46909:CDS | 35.0% | |
| CAGTTCTGCATAGAATCTAT+GGG | + | chr8.2:15622816-15622835 | MS.gene46909:CDS | 35.0% | |
| CATCTTTGAACGATAGAGAA+GGG | - | chr8.2:15622349-15622368 | None:intergenic | 35.0% | |
| CTGTTAGCAATATCATCTAC+CGG | + | chr8.2:15622873-15622892 | MS.gene46909:CDS | 35.0% | |
| GTAGATCATAAACAACTTGC+AGG | - | chr8.2:15622667-15622686 | None:intergenic | 35.0% | |
| TACATAACTCACAGAATCAC+TGG | + | chr8.2:15623994-15624013 | MS.gene46909:CDS | 35.0% | |
| TAGGGTCTTCAGAATCAAAA+AGG | - | chr8.2:15622775-15622794 | None:intergenic | 35.0% | |
| TGGGAAAACCCTAAACAAAT+TGG | - | chr8.2:15622573-15622592 | None:intergenic | 35.0% | |
| TGTTCTGTACAGTTCTTATC+AGG | - | chr8.2:15622446-15622465 | None:intergenic | 35.0% | |
| TTAAAAGAGCAACTAGAACG+AGG | - | chr8.2:15623312-15623331 | None:intergenic | 35.0% | |
| TTGCACAAACCCAAATCTAT+TGG | + | chr8.2:15623025-15623044 | MS.gene46909:CDS | 35.0% | |
| ! | AAACAAAAGCATGATCTACG+TGG | - | chr8.2:15622739-15622758 | None:intergenic | 35.0% |
| ! | AACAAAAGCATGATCTACGT+GGG | - | chr8.2:15622738-15622757 | None:intergenic | 35.0% |
| ! | ATAGATTTGGGTTTGTGCAA+AGG | - | chr8.2:15623025-15623044 | None:intergenic | 35.0% |
| ! | ATTGGTTAGCTCAGTGATAA+AGG | + | chr8.2:15623105-15623124 | MS.gene46909:CDS | 35.0% |
| ! | GGTTTTGCGTTATAAGATTC+AGG | - | chr8.2:15623938-15623957 | None:intergenic | 35.0% |
| ! | GTGTGCAACCAATTTGTTTA+GGG | + | chr8.2:15622562-15622581 | MS.gene46909:CDS | 35.0% |
| ! | TAATGGAATTGCTGAGCTTT+TGG | + | chr8.2:15622919-15622938 | MS.gene46909:CDS | 35.0% |
| ! | TCATCTAAAGCTCAAGTTTG+AGG | - | chr8.2:15623728-15623747 | None:intergenic | 35.0% |
| ! | TCATGAACATTAGCTCCTTT+TGG | - | chr8.2:15623162-15623181 | None:intergenic | 35.0% |
| ! | TCTTTCTTATGTTCTGAGTC+AGG | - | chr8.2:15624037-15624056 | None:intergenic | 35.0% |
| ! | TGGTTCATAGGCCTTTTATA+AGG | + | chr8.2:15622846-15622865 | MS.gene46909:CDS | 35.0% |
| ! | TGTGTGCAACCAATTTGTTT+AGG | + | chr8.2:15622561-15622580 | MS.gene46909:CDS | 35.0% |
| ! | TTGGTTAGCTCAGTGATAAA+GGG | + | chr8.2:15623106-15623125 | MS.gene46909:CDS | 35.0% |
| ! | TTTTCTTGTGATTGTTCAGG+TGG | + | chr8.2:15623875-15623894 | MS.gene46909:intron | 35.0% |
| !! | CTGAGCTTTTGGAGATTTTT+GGG | + | chr8.2:15622930-15622949 | MS.gene46909:CDS | 35.0% |
| !! | GCTGTTTTCATAAGTTATCC+AGG | - | chr8.2:15623511-15623530 | None:intergenic | 35.0% |
| !! | GGCAATAGTACTACTAGTTT+TGG | + | chr8.2:15622206-15622225 | MS.gene46909:CDS | 35.0% |
| !! | TCCTTTTGGCTATTAGTAAC+TGG | - | chr8.2:15623148-15623167 | None:intergenic | 35.0% |
| AATCAAGTGATGTAGCTGAG+AGG | + | chr8.2:15624123-15624142 | MS.gene46909:CDS | 40.0% | |
| CTAATTTCACTAAGCTCTCC+TGG | + | chr8.2:15623490-15623509 | MS.gene46909:intron | 40.0% | |
| CTTTGCAGAATCTGATGAGT+CGG | - | chr8.2:15622177-15622196 | None:intergenic | 40.0% | |
| GATTCTGCAAAGAGTGATTC+TGG | + | chr8.2:15622185-15622204 | MS.gene46909:CDS | 40.0% | |
| GCCAGTTACTAATAGCCAAA+AGG | + | chr8.2:15623144-15623163 | MS.gene46909:CDS | 40.0% | |
| GCTAATGTTCATGAGTGAGT+TGG | + | chr8.2:15623168-15623187 | MS.gene46909:CDS | 40.0% | |
| TACTCGAACGAAACTTAGGT+GGG | - | chr8.2:15622592-15622611 | None:intergenic | 40.0% | |
| TGAGAGGCGAAGAATAACAT+GGG | + | chr8.2:15624139-15624158 | MS.gene46909:CDS | 40.0% | |
| ! | GAATCTGATGAGTCGGATTT+TGG | - | chr8.2:15622170-15622189 | None:intergenic | 40.0% |
| ! | TTATGGTGCCTTTGTTTCGA+CGG | + | chr8.2:15623233-15623252 | MS.gene46909:CDS | 40.0% |
| ! | TTATGTTCTGAGTCAGGTTC+AGG | - | chr8.2:15624031-15624050 | None:intergenic | 40.0% |
| !! | GCTGAGCTTTTGGAGATTTT+TGG | + | chr8.2:15622929-15622948 | MS.gene46909:CDS | 40.0% |
| !! | TCGGATTTTGGCAACTTCTT+AGG | - | chr8.2:15622158-15622177 | None:intergenic | 40.0% |
| AAGTTTCGTTCGAGTAGTGG+TGG | + | chr8.2:15622596-15622615 | MS.gene46909:CDS | 45.0% | |
| AGAGCAACTAGAACGAGGAT+CGG | - | chr8.2:15623307-15623326 | None:intergenic | 45.0% | |
| AGCAATTCCATTATGCCGCT+CGG | - | chr8.2:15622912-15622931 | None:intergenic | 45.0% | |
| ATCCAAACTGGACATCCATG+AGG | + | chr8.2:15623650-15623669 | MS.gene46909:intron | 45.0% | |
| ATCCTCATGGATGTCCAGTT+TGG | - | chr8.2:15623655-15623674 | None:intergenic | 45.0% | |
| CCACTACTCGAACGAAACTT+AGG | - | chr8.2:15622596-15622615 | None:intergenic | 45.0% | |
| CCTAAGTTTCGTTCGAGTAG+TGG | + | chr8.2:15622593-15622612 | MS.gene46909:CDS | 45.0% | |
| CTACTCGAACGAAACTTAGG+TGG | - | chr8.2:15622593-15622612 | None:intergenic | 45.0% | |
| CTGAGAGGCGAAGAATAACA+TGG | + | chr8.2:15624138-15624157 | MS.gene46909:CDS | 45.0% | |
| CTGGACATCCATGAGGATAT+TGG | + | chr8.2:15623657-15623676 | MS.gene46909:intron | 45.0% | |
| GATGCTATCTCAAATGGACG+AGG | + | chr8.2:15624055-15624074 | MS.gene46909:CDS | 45.0% | |
| GCTCGGTTTCGAAAACAAAC+CGG | - | chr8.2:15622895-15622914 | None:intergenic | 45.0% | |
| GGCTGAATTCCAGAAGGTTA+TGG | + | chr8.2:15623216-15623235 | MS.gene46909:CDS | 45.0% | |
| GTGCTCTTCTTTCAATGGCA+AGG | - | chr8.2:15622975-15622994 | None:intergenic | 45.0% | |
| TAGCATGGCTGAATTCCAGA+AGG | + | chr8.2:15623210-15623229 | MS.gene46909:CDS | 45.0% | |
| TCGGCTAAGAGAAAACAACC+TGG | - | chr8.2:15623288-15623307 | None:intergenic | 45.0% | |
| TCTTGTGATTGTTCAGGTGG+CGG | + | chr8.2:15623878-15623897 | MS.gene46909:intron | 45.0% | |
| TTTCCTGCAAGCATGAATGC+TGG | + | chr8.2:15622308-15622327 | MS.gene46909:CDS | 45.0% | |
| ! | CGGAACGAGCTCATTTGTTA+TGG | + | chr8.2:15623898-15623917 | MS.gene46909:CDS | 45.0% |
| ! | GTTCATGAGTGAGTTGGAAG+AGG | + | chr8.2:15623174-15623193 | MS.gene46909:CDS | 45.0% |
| ! | TAGCAGTAGCTGGTTTCACT+TGG | - | chr8.2:15624226-15624245 | None:intergenic | 45.0% |
| !! | ACAAAGGCACCATAACCTTC+TGG | - | chr8.2:15623228-15623247 | None:intergenic | 45.0% |
| !! | GAGTGAGTTGGAAGAGGTTT+TGG | + | chr8.2:15623180-15623199 | MS.gene46909:CDS | 45.0% |
| !! | GGTTTGTTTTCGAAACCGAG+CGG | + | chr8.2:15622894-15622913 | MS.gene46909:CDS | 45.0% |
| !!! | GGTTTTGGAGATGACTAGCA+TGG | + | chr8.2:15623195-15623214 | MS.gene46909:CDS | 45.0% |
| AATATCACCACCACCGCCTA+CGG | - | chr8.2:15624198-15624217 | None:intergenic | 50.0% | |
| ACACCAGCATTCATGCTTGC+AGG | - | chr8.2:15622314-15622333 | None:intergenic | 50.0% | |
| ACCAGCTACTGCTACATGCT+CGG | + | chr8.2:15624232-15624251 | MS.gene46909:CDS | 50.0% | |
| AGCCTGTGTTTGATCCTGCT+TGG | + | chr8.2:15622636-15622655 | MS.gene46909:CDS | 50.0% | |
| ATGCCAACGCAAGATCGAAG+AGG | + | chr8.2:15624091-15624110 | MS.gene46909:CDS | 50.0% | |
| CAAGCCAACCGTCGAAACAA+AGG | - | chr8.2:15623244-15623263 | None:intergenic | 50.0% | |
| CGAGAGGCAGAATCACTTGT+CGG | - | chr8.2:15623959-15623978 | None:intergenic | 50.0% | |
| CTTCCTCTTCGATCTTGCGT+TGG | - | chr8.2:15624097-15624116 | None:intergenic | 50.0% | |
| GACCAAGCAGGATCAAACAC+AGG | - | chr8.2:15622641-15622660 | None:intergenic | 50.0% | |
| TTACACAACGCAGCGATTGC+TGG | - | chr8.2:15622539-15622558 | None:intergenic | 50.0% | |
| TTCGAAACCGAGCGGCATAA+TGG | + | chr8.2:15622902-15622921 | MS.gene46909:CDS | 50.0% | |
| ! | AACAACCTGGTAATGCGAGC+TGG | - | chr8.2:15623275-15623294 | None:intergenic | 50.0% |
| !! | ACAAGTGCTGAGAACACGAG+AGG | - | chr8.2:15623975-15623994 | None:intergenic | 50.0% |
| ACCGAGCATGTAGCAGTAGC+TGG | - | chr8.2:15624236-15624255 | None:intergenic | 55.0% | |
| ACTTGCAGGTGAGACCAAGC+AGG | - | chr8.2:15622653-15622672 | None:intergenic | 55.0% | |
| CCTTACCAGCTCGCATTACC+AGG | + | chr8.2:15623267-15623286 | MS.gene46909:CDS | 55.0% | |
| ! | CCTGGTAATGCGAGCTGGTA+AGG | - | chr8.2:15623270-15623289 | None:intergenic | 55.0% |
| ! | GGTGCCTTTGTTTCGACGGT+TGG | + | chr8.2:15623237-15623256 | MS.gene46909:CDS | 55.0% |
| ACCAGCGTCCAATCCGTAGG+CGG | + | chr8.2:15624182-15624201 | MS.gene46909:CDS | 60.0% | |
| !! | TACGGATTGGACGCTGGTGG+CGG | - | chr8.2:15624180-15624199 | None:intergenic | 60.0% |
| AGCGTCCAATCCGTAGGCGG+TGG | + | chr8.2:15624185-15624204 | MS.gene46909:CDS | 65.0% | |
| CACCACCACCGCCTACGGAT+TGG | - | chr8.2:15624193-15624212 | None:intergenic | 65.0% | |
| GCCACCAGCGTCCAATCCGT+AGG | + | chr8.2:15624179-15624198 | MS.gene46909:CDS | 65.0% | |
| GTCCAATCCGTAGGCGGTGG+TGG | + | chr8.2:15624188-15624207 | MS.gene46909:CDS | 65.0% | |
| !! | ACCGCCTACGGATTGGACGC+TGG | - | chr8.2:15624186-15624205 | None:intergenic | 65.0% |
| !! | CGCTGGTGGCGGCTTCTTCA+AGG | - | chr8.2:15624169-15624188 | None:intergenic | 65.0% |
| !! | GCCTACGGATTGGACGCTGG+TGG | - | chr8.2:15624183-15624202 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 15622128 | 15624265 | 15622128 | ID=MS.gene46909 |
| chr8.2 | mRNA | 15622128 | 15624265 | 15622128 | ID=MS.gene46909.t1;Parent=MS.gene46909 |
| chr8.2 | exon | 15622128 | 15623288 | 15622128 | ID=MS.gene46909.t1.exon1;Parent=MS.gene46909.t1 |
| chr8.2 | CDS | 15622128 | 15623288 | 15622128 | ID=cds.MS.gene46909.t1;Parent=MS.gene46909.t1 |
| chr8.2 | exon | 15623894 | 15624265 | 15623894 | ID=MS.gene46909.t1.exon2;Parent=MS.gene46909.t1 |
| chr8.2 | CDS | 15623894 | 15624265 | 15623894 | ID=cds.MS.gene46909.t1;Parent=MS.gene46909.t1 |
| Gene Sequence |
| Protein sequence |
