Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46950.t1 | XP_013459622.1 | 98.5 | 581 | 9 | 0 | 1 | 581 | 1 | 581 | 0.00E+00 | 1157.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46950.t1 | Q9FNN2 | 58.4 | 589 | 231 | 4 | 1 | 577 | 1 | 587 | 1.5e-205 | 717.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46950.t1 | A0A072UX44 | 98.5 | 581 | 9 | 0 | 1 | 581 | 1 | 581 | 0.0e+00 | 1157.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene90875 | MS.gene46950 | PPI |
MS.gene46950 | MS.gene046999 | PPI |
MS.gene46950 | MS.gene028125 | PPI |
MS.gene46950 | MS.gene038038 | PPI |
MS.gene46950 | MS.gene82134 | PPI |
MS.gene46950 | MS.gene059032 | PPI |
MS.gene93101 | MS.gene46950 | PPI |
MS.gene46950 | MS.gene029150 | PPI |
MS.gene46950 | MS.gene60626 | PPI |
MS.gene46950 | MS.gene93755 | PPI |
MS.gene46950 | MS.gene040117 | PPI |
MS.gene46950 | MS.gene037397 | PPI |
MS.gene46950 | MS.gene006217 | PPI |
MS.gene46950 | MS.gene066265 | PPI |
MS.gene46950 | MS.gene49165 | PPI |
MS.gene46950 | MS.gene83470 | PPI |
MS.gene94559 | MS.gene46950 | PPI |
MS.gene72794 | MS.gene46950 | PPI |
MS.gene46950 | MS.gene94817 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46950.t1 | MTR_3g449990 | 98.451 | 581 | 9 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1170 |
MS.gene46950.t1 | MTR_5g090420 | 76.764 | 581 | 126 | 5 | 1 | 581 | 1 | 572 | 0.0 | 887 |
MS.gene46950.t1 | MTR_1g069345 | 46.154 | 507 | 263 | 3 | 52 | 556 | 6 | 504 | 5.98e-160 | 467 |
MS.gene46950.t1 | MTR_3g449950 | 67.820 | 289 | 84 | 3 | 1 | 288 | 1 | 281 | 5.17e-111 | 334 |
MS.gene46950.t1 | MTR_1g072140 | 29.801 | 302 | 202 | 7 | 259 | 555 | 16 | 312 | 6.94e-38 | 142 |
MS.gene46950.t1 | MTR_4g119620 | 26.299 | 308 | 214 | 7 | 259 | 555 | 16 | 321 | 1.61e-29 | 119 |
MS.gene46950.t1 | MTR_8g092620 | 22.483 | 298 | 225 | 5 | 258 | 555 | 6 | 297 | 3.67e-21 | 94.7 |
MS.gene46950.t1 | MTR_7g086360 | 23.179 | 302 | 215 | 10 | 263 | 554 | 48 | 342 | 5.74e-20 | 92.0 |
MS.gene46950.t1 | MTR_8g092620 | 21.993 | 291 | 222 | 4 | 258 | 548 | 13 | 298 | 4.40e-19 | 89.0 |
MS.gene46950.t1 | MTR_5g016350 | 26.667 | 345 | 200 | 13 | 263 | 572 | 226 | 552 | 2.27e-18 | 89.0 |
MS.gene46950.t1 | MTR_5g016350 | 26.667 | 345 | 200 | 13 | 263 | 572 | 162 | 488 | 3.38e-18 | 88.2 |
MS.gene46950.t1 | MTR_3g106080 | 32.571 | 175 | 111 | 4 | 268 | 439 | 459 | 629 | 3.57e-18 | 88.6 |
MS.gene46950.t1 | MTR_5g016370 | 25.000 | 336 | 208 | 11 | 263 | 568 | 240 | 561 | 2.52e-17 | 85.9 |
MS.gene46950.t1 | MTR_5g016370 | 28.276 | 145 | 91 | 3 | 263 | 397 | 423 | 564 | 3.73e-11 | 66.2 |
MS.gene46950.t1 | MTR_1g097140 | 26.087 | 299 | 202 | 10 | 266 | 558 | 119 | 404 | 6.97e-17 | 83.6 |
MS.gene46950.t1 | MTR_4g095058 | 23.708 | 329 | 215 | 8 | 257 | 558 | 215 | 534 | 2.68e-16 | 82.4 |
MS.gene46950.t1 | MTR_4g095058 | 31.469 | 143 | 85 | 3 | 264 | 396 | 405 | 544 | 7.26e-12 | 68.6 |
MS.gene46950.t1 | MTR_4g095058 | 23.708 | 329 | 215 | 8 | 257 | 558 | 217 | 536 | 2.74e-16 | 82.4 |
MS.gene46950.t1 | MTR_4g095058 | 31.469 | 143 | 85 | 3 | 264 | 396 | 407 | 546 | 7.03e-12 | 68.6 |
MS.gene46950.t1 | MTR_1g054300 | 23.188 | 345 | 207 | 12 | 256 | 555 | 150 | 481 | 4.57e-14 | 75.1 |
MS.gene46950.t1 | MTR_5g022690 | 28.889 | 180 | 120 | 5 | 263 | 439 | 314 | 488 | 1.13e-13 | 73.9 |
MS.gene46950.t1 | MTR_3g061450 | 25.000 | 288 | 202 | 9 | 268 | 550 | 17 | 295 | 1.87e-13 | 72.0 |
MS.gene46950.t1 | MTR_4g104380 | 24.522 | 314 | 209 | 11 | 255 | 555 | 215 | 513 | 3.39e-13 | 72.8 |
MS.gene46950.t1 | MTR_6g004040 | 26.115 | 157 | 111 | 3 | 260 | 415 | 91 | 243 | 3.76e-13 | 72.8 |
MS.gene46950.t1 | MTR_7g104550 | 25.249 | 301 | 169 | 10 | 278 | 557 | 77 | 342 | 6.16e-13 | 70.9 |
MS.gene46950.t1 | MTR_8g467040 | 24.768 | 323 | 216 | 11 | 252 | 555 | 101 | 415 | 2.06e-12 | 69.7 |
MS.gene46950.t1 | MTR_2g054920 | 23.368 | 291 | 202 | 9 | 272 | 555 | 21 | 297 | 1.70e-11 | 66.2 |
MS.gene46950.t1 | MTR_3g107910 | 26.761 | 284 | 188 | 12 | 277 | 555 | 635 | 903 | 2.51e-11 | 67.0 |
MS.gene46950.t1 | MTR_3g107910 | 26.761 | 284 | 188 | 12 | 277 | 555 | 628 | 896 | 2.59e-11 | 67.0 |
MS.gene46950.t1 | MTR_3g075400 | 23.759 | 282 | 163 | 11 | 278 | 555 | 275 | 508 | 5.39e-11 | 65.5 |
MS.gene46950.t1 | MTR_2g012630 | 21.656 | 157 | 120 | 1 | 260 | 416 | 90 | 243 | 5.85e-11 | 66.2 |
MS.gene46950.t1 | MTR_1g050340 | 23.860 | 285 | 196 | 12 | 277 | 555 | 516 | 785 | 6.35e-11 | 65.9 |
MS.gene46950.t1 | MTR_1g050340 | 23.860 | 285 | 196 | 12 | 277 | 555 | 517 | 786 | 6.87e-11 | 65.9 |
MS.gene46950.t1 | MTR_2g012630 | 21.656 | 157 | 120 | 1 | 260 | 416 | 90 | 243 | 7.02e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46950.t1 | AT5G08560 | 58.404 | 589 | 231 | 4 | 1 | 577 | 1 | 587 | 0.0 | 724 |
MS.gene46950.t1 | AT5G08560 | 58.404 | 589 | 231 | 4 | 1 | 577 | 1 | 587 | 0.0 | 724 |
MS.gene46950.t1 | AT5G08560 | 58.404 | 589 | 231 | 4 | 1 | 577 | 1 | 587 | 0.0 | 724 |
MS.gene46950.t1 | AT5G43920 | 48.141 | 511 | 255 | 5 | 53 | 556 | 7 | 514 | 1.40e-161 | 471 |
MS.gene46950.t1 | AT4G02730 | 30.693 | 303 | 199 | 9 | 259 | 555 | 32 | 329 | 3.90e-33 | 130 |
MS.gene46950.t1 | AT3G49660 | 27.667 | 300 | 210 | 6 | 264 | 558 | 18 | 315 | 7.15e-31 | 123 |
MS.gene46950.t1 | AT3G49660 | 34.328 | 134 | 83 | 3 | 261 | 391 | 146 | 277 | 1.51e-13 | 72.4 |
MS.gene46950.t1 | AT2G43770 | 24.000 | 300 | 215 | 9 | 263 | 554 | 46 | 340 | 2.91e-23 | 101 |
MS.gene46950.t1 | AT5G64730 | 24.252 | 301 | 220 | 6 | 256 | 555 | 4 | 297 | 5.55e-21 | 94.4 |
MS.gene46950.t1 | AT5G25150 | 39.496 | 119 | 69 | 1 | 268 | 386 | 458 | 573 | 3.18e-19 | 92.0 |
MS.gene46950.t1 | AT5G25150 | 23.182 | 220 | 158 | 5 | 261 | 475 | 409 | 622 | 2.36e-13 | 73.6 |
MS.gene46950.t1 | AT5G25150 | 39.496 | 119 | 69 | 1 | 268 | 386 | 458 | 573 | 3.44e-19 | 92.0 |
MS.gene46950.t1 | AT5G25150 | 23.182 | 220 | 158 | 5 | 261 | 475 | 409 | 622 | 3.05e-13 | 73.2 |
MS.gene46950.t1 | AT1G71840 | 24.013 | 304 | 211 | 7 | 262 | 555 | 62 | 355 | 1.30e-15 | 79.7 |
MS.gene46950.t1 | AT5G67320 | 23.853 | 327 | 219 | 10 | 256 | 558 | 251 | 571 | 3.05e-15 | 79.3 |
MS.gene46950.t1 | AT5G67320 | 31.081 | 148 | 89 | 3 | 260 | 397 | 438 | 582 | 8.94e-13 | 71.6 |
MS.gene46950.t1 | AT2G41500 | 30.645 | 124 | 83 | 1 | 263 | 386 | 332 | 452 | 3.87e-14 | 75.9 |
MS.gene46950.t1 | AT2G41500 | 23.232 | 297 | 178 | 6 | 260 | 555 | 288 | 535 | 4.31e-12 | 69.3 |
MS.gene46950.t1 | AT2G41500 | 30.645 | 124 | 83 | 1 | 263 | 386 | 332 | 452 | 3.87e-14 | 75.9 |
MS.gene46950.t1 | AT2G41500 | 23.232 | 297 | 178 | 6 | 260 | 555 | 288 | 535 | 4.31e-12 | 69.3 |
MS.gene46950.t1 | AT5G60940 | 19.531 | 384 | 270 | 11 | 208 | 555 | 45 | 425 | 5.21e-13 | 71.6 |
MS.gene46950.t1 | AT1G73720 | 19.466 | 524 | 374 | 16 | 61 | 555 | 5 | 509 | 2.11e-12 | 70.1 |
MS.gene46950.t1 | AT5G60940 | 20.489 | 327 | 236 | 10 | 250 | 555 | 10 | 333 | 4.45e-12 | 68.2 |
MS.gene46950.t1 | AT5G52820 | 21.149 | 435 | 245 | 15 | 206 | 555 | 50 | 471 | 6.28e-12 | 68.6 |
MS.gene46950.t1 | AT5G08390 | 24.359 | 156 | 115 | 1 | 260 | 415 | 91 | 243 | 7.02e-12 | 68.9 |
MS.gene46950.t1 | AT5G54520 | 24.127 | 315 | 222 | 8 | 255 | 555 | 145 | 456 | 3.00e-11 | 66.2 |
MS.gene46950.t1 | AT5G16750 | 29.677 | 155 | 99 | 6 | 407 | 557 | 27 | 175 | 3.95e-11 | 66.6 |
MS.gene46950.t1 | AT5G23430 | 23.718 | 156 | 116 | 1 | 260 | 415 | 91 | 243 | 4.26e-11 | 66.6 |
MS.gene46950.t1 | AT5G23430 | 23.718 | 156 | 116 | 1 | 260 | 415 | 91 | 243 | 4.26e-11 | 66.6 |
MS.gene46950.t1 | AT5G23430 | 23.718 | 156 | 116 | 1 | 260 | 415 | 91 | 243 | 4.26e-11 | 66.6 |
Find 146 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGCATCTTGTTGCAAAATT+AGG | 0.127762 | 3.2:+37811514 | None:intergenic |
TGTGGAAAGTATATACTTTC+TGG | 0.200681 | 3.2:-37806251 | MS.gene46950:CDS |
AACCCTCAAGATTTCTGATT+TGG | 0.228555 | 3.2:-37806159 | MS.gene46950:CDS |
GATGCGTTGCCCGGTCATTC+TGG | 0.234741 | 3.2:-37805262 | MS.gene46950:CDS |
AAACAGATGAAACAGATTTC+TGG | 0.290772 | 3.2:+37806411 | None:intergenic |
TTGCCATTGCTGTATGCATT+TGG | 0.292462 | 3.2:+37805130 | None:intergenic |
AATCTGTTTCATCTGTTTCC+TGG | 0.293813 | 3.2:-37806406 | MS.gene46950:CDS |
ATGACCGGACAGTCCGGATA+TGG | 0.294398 | 3.2:-37805180 | MS.gene46950:CDS |
AGCATCTTGTTGCAAAATTA+GGG | 0.298828 | 3.2:+37811515 | None:intergenic |
TATTCCAAAGATGTATTTCC+TGG | 0.324628 | 3.2:+37805973 | None:intergenic |
ATTTCTGATTTGGAAATAAC+AGG | 0.332254 | 3.2:-37806149 | MS.gene46950:CDS |
AACGAAGTTGTTGGTTCAAA+AGG | 0.341842 | 3.2:-37812041 | MS.gene46950:CDS |
CTAACCTGTAATGTTCTAGA+TGG | 0.343914 | 3.2:+37811420 | None:intergenic |
TGAACCAGGAAATACATCTT+TGG | 0.345081 | 3.2:-37805977 | MS.gene46950:CDS |
CGTTGTCCCCTTCAGATGAT+AGG | 0.345670 | 3.2:+37812060 | None:intergenic |
GTACGCACGTTGAATAAAAT+TGG | 0.352238 | 3.2:-37811852 | MS.gene46950:CDS |
TCCGACCAATGTGGTTCTTC+TGG | 0.354530 | 3.2:-37811651 | MS.gene46950:CDS |
TCTTCTGTGGAGCGTGTTGT+AGG | 0.357737 | 3.2:-37812110 | MS.gene46950:CDS |
GTAAGAAGCTCTTGGCCATT+AGG | 0.359812 | 3.2:+37806380 | None:intergenic |
ATGATCGAACTGCAATCATT+TGG | 0.365648 | 3.2:-37807713 | MS.gene46950:CDS |
GTTTATGAAAAGAATGGTTC+TGG | 0.368635 | 3.2:-37806299 | MS.gene46950:CDS |
GATACCATCTAGAACATTAC+AGG | 0.375880 | 3.2:-37811424 | MS.gene46950:intron |
GAAGGAGATCTTAAGCTTGT+TGG | 0.378421 | 3.2:-37805948 | MS.gene46950:CDS |
TGCCATTGCTGTATGCATTT+GGG | 0.379560 | 3.2:+37805131 | None:intergenic |
ATGCCCATGACGATGAAGTA+TGG | 0.396463 | 3.2:-37807782 | MS.gene46950:CDS |
TCTGTTTCCTGGAGTCCTAA+TGG | 0.400766 | 3.2:-37806395 | MS.gene46950:CDS |
AAGGAGATCTTAAGCTTGTT+GGG | 0.403127 | 3.2:-37805947 | MS.gene46950:CDS |
TACATATGGCACAGAAGCTC+AGG | 0.404511 | 3.2:-37805295 | MS.gene46950:CDS |
ATGTTTGCTAGGTTTACATA+TGG | 0.410206 | 3.2:-37805309 | MS.gene46950:intron |
GTTATTAGATCTTGCTTTGG+AGG | 0.410907 | 3.2:-37805894 | MS.gene46950:CDS |
GCACAGAAGCTCAGGGGACT+TGG | 0.415521 | 3.2:-37805287 | MS.gene46950:CDS |
TTTGTTATTAGATCTTGCTT+TGG | 0.415973 | 3.2:-37805897 | MS.gene46950:CDS |
TGAGCTTCTCGATGGGGATA+AGG | 0.418359 | 3.2:-37811769 | MS.gene46950:CDS |
TGATCGAACTGCAATCATTT+GGG | 0.424105 | 3.2:-37807712 | MS.gene46950:CDS |
TCTCGATGGGGATAAGGTTA+TGG | 0.431229 | 3.2:-37811763 | MS.gene46950:CDS |
ACAAAGGCATTGTATTCTCT+TGG | 0.432179 | 3.2:-37811984 | MS.gene46950:CDS |
AGGATCTTCGAGTGAGTTGA+TGG | 0.433999 | 3.2:-37812090 | MS.gene46950:CDS |
ATACATCTTTGGAATATAGA+AGG | 0.440068 | 3.2:-37805966 | MS.gene46950:CDS |
GAAACCATGCACAGGAGATC+AGG | 0.443605 | 3.2:+37806276 | None:intergenic |
CTGCAAGTTTATGAAAAGAA+TGG | 0.450397 | 3.2:-37806305 | MS.gene46950:CDS |
GTTTCACAACTCATTGGATA+AGG | 0.458365 | 3.2:-37811487 | MS.gene46950:CDS |
CTCTTGGCCATTAGGACTCC+AGG | 0.461420 | 3.2:+37806388 | None:intergenic |
ATTCCAGCTCACACAGTTAA+CGG | 0.464206 | 3.2:+37805237 | None:intergenic |
AGCAGGTACTTGATGGTGAT+TGG | 0.465527 | 3.2:-37811884 | MS.gene46950:CDS |
TAGGCGTTGGGATGTCTCTA+CGG | 0.466197 | 3.2:-37806336 | MS.gene46950:CDS |
AGATGTTCCAATCTCTTCTC+AGG | 0.467671 | 3.2:+37811549 | None:intergenic |
CTTCTATAGGTAGACACAAA+TGG | 0.468900 | 3.2:-37806467 | MS.gene46950:intron |
AAAGGATAGCAGATTCTTGT+TGG | 0.470335 | 3.2:-37806009 | MS.gene46950:CDS |
TGACCGGACAGTCCGGATAT+GGG | 0.471203 | 3.2:-37805179 | MS.gene46950:CDS |
GTTGTCCCCTTCAGATGATA+GGG | 0.475139 | 3.2:+37812061 | None:intergenic |
TTGCTCGTTTCACAACTCAT+TGG | 0.475980 | 3.2:-37811493 | MS.gene46950:CDS |
GGAGGAAGCTGTTAGGCGTT+GGG | 0.478080 | 3.2:-37806348 | MS.gene46950:CDS |
GTGGAGTGGAGGAAGCTGTT+AGG | 0.478153 | 3.2:-37806355 | MS.gene46950:CDS |
TTATTAGATCTTGCTTTGGA+GGG | 0.480774 | 3.2:-37805893 | MS.gene46950:CDS |
GATATGGGGCTTAAAGTGTC+TGG | 0.481401 | 3.2:-37805164 | MS.gene46950:CDS |
AAGTATATACTTTCTGGCCT+CGG | 0.485551 | 3.2:-37806245 | MS.gene46950:CDS |
AATGATACCTGAGAAGAGAT+TGG | 0.486595 | 3.2:-37811556 | MS.gene46950:CDS |
AACAGTCATCACTGCAATTG+TGG | 0.488136 | 3.2:-37805109 | MS.gene46950:CDS |
TTTCCAAATCAGAAATCTTG+AGG | 0.489920 | 3.2:+37806156 | None:intergenic |
ACGGGAAAGAAGTTGAGTCT+TGG | 0.492609 | 3.2:-37806193 | MS.gene46950:CDS |
AGCCCCATATCCGGACTGTC+CGG | 0.492790 | 3.2:+37805176 | None:intergenic |
TCTCAGGTATCATTACAGTC+GGG | 0.493837 | 3.2:+37811565 | None:intergenic |
GAAAACCTAGAGGAGGAGTC+TGG | 0.494898 | 3.2:-37811945 | MS.gene46950:CDS |
TTTATGCAGCAGGTACTTGA+TGG | 0.495020 | 3.2:-37811891 | MS.gene46950:CDS |
CTGGCCTGATCTCCTGTGCA+TGG | 0.495260 | 3.2:-37806280 | MS.gene46950:CDS |
GAAGGGGACAACGAAGTTGT+TGG | 0.495553 | 3.2:-37812050 | MS.gene46950:CDS |
GACTTGGTAGATGCGTTGCC+CGG | 0.495687 | 3.2:-37805271 | MS.gene46950:CDS |
GACACTTTAAGCCCCATATC+CGG | 0.496823 | 3.2:+37805167 | None:intergenic |
ACAGTCATCACTGCAATTGT+GGG | 0.498686 | 3.2:-37805108 | MS.gene46950:CDS |
TTCCAAATCAGAAATCTTGA+GGG | 0.500940 | 3.2:+37806157 | None:intergenic |
CTCCACATGTAAGAAGCTCT+TGG | 0.503254 | 3.2:+37806372 | None:intergenic |
TTCTCAGGTATCATTACAGT+CGG | 0.505834 | 3.2:+37811564 | None:intergenic |
TCCTGTGCATGGTTTCCTTG+TGG | 0.507321 | 3.2:-37806269 | MS.gene46950:CDS |
TGGAGGAAGCTGTTAGGCGT+TGG | 0.508032 | 3.2:-37806349 | MS.gene46950:CDS |
GCAGGTACTTGATGGTGATT+GGG | 0.509356 | 3.2:-37811883 | MS.gene46950:CDS |
ACGAAGTTGTTGGTTCAAAA+GGG | 0.512756 | 3.2:-37812040 | MS.gene46950:CDS |
AAGCAATCGTTTATTGCTAG+TGG | 0.517938 | 3.2:-37805867 | MS.gene46950:CDS |
GAGGACTCGCTTGAAACTGC+TGG | 0.526102 | 3.2:-37811610 | MS.gene46950:CDS |
AACATCATTCTCTTTGTCAA+AGG | 0.526314 | 3.2:-37806027 | MS.gene46950:CDS |
CAAGTGATGACCGGACAGTC+CGG | 0.526408 | 3.2:-37805186 | MS.gene46950:CDS |
TTTGCATGTGGGAATTAGAC+GGG | 0.530130 | 3.2:-37806211 | MS.gene46950:CDS |
GTTGGTTAATCTTCTGAACC+AGG | 0.530280 | 3.2:-37805991 | MS.gene46950:CDS |
ATTTGGAAATAACAGGTGAC+GGG | 0.531109 | 3.2:-37806142 | MS.gene46950:CDS |
GATTTGGAAATAACAGGTGA+CGG | 0.534740 | 3.2:-37806143 | MS.gene46950:CDS |
CTCTAACGGTTCATCTTCTG+TGG | 0.542353 | 3.2:-37812123 | MS.gene46950:CDS |
AAACCATACTTCATCGTCAT+GGG | 0.547234 | 3.2:+37807779 | None:intergenic |
ATTTGCATGTGGGAATTAGA+CGG | 0.554899 | 3.2:-37806212 | MS.gene46950:CDS |
AGGCGTTGGGATGTCTCTAC+GGG | 0.555790 | 3.2:-37806335 | MS.gene46950:CDS |
CTTCGAGTGAGTTGATGGCT+CGG | 0.557037 | 3.2:-37812085 | MS.gene46950:CDS |
ACCAGAAGAACCACATTGGT+CGG | 0.557604 | 3.2:+37811650 | None:intergenic |
CTTGCTGAGGCCAACATGTG+GGG | 0.557812 | 3.2:+37805205 | None:intergenic |
CGAACGAAATTGTTGTGTAA+CGG | 0.557961 | 3.2:-37812158 | MS.gene46950:CDS |
ACTTGCTGAGGCCAACATGT+GGG | 0.559249 | 3.2:+37805204 | None:intergenic |
GTTAACGGCTCCAGAATGAC+CGG | 0.560282 | 3.2:+37805252 | None:intergenic |
TCTATGAAGCATAAATTATG+TGG | 0.562604 | 3.2:-37806437 | MS.gene46950:CDS |
GTATGCCAGACTCCTCCTCT+AGG | 0.567059 | 3.2:+37811940 | None:intergenic |
GAGCCGTTAACTGTGTGAGC+TGG | 0.567883 | 3.2:-37805240 | MS.gene46950:CDS |
TGGCCTCAGCAAGTGATGAC+CGG | 0.567955 | 3.2:-37805195 | MS.gene46950:CDS |
TAGTGGAAGTGAGGATTCAC+AGG | 0.569174 | 3.2:-37805850 | MS.gene46950:intron |
GCTCGGCCCCTATCATCTGA+AGG | 0.573835 | 3.2:-37812068 | MS.gene46950:CDS |
CACTTGCTGAGGCCAACATG+TGG | 0.574136 | 3.2:+37805203 | None:intergenic |
TGGATGCATTAAAGACATTG+AGG | 0.574890 | 3.2:-37811743 | MS.gene46950:CDS |
CTCGGCCCCTATCATCTGAA+GGG | 0.575430 | 3.2:-37812067 | MS.gene46950:CDS |
GGTAAATGTGTTTATGCAGC+AGG | 0.577455 | 3.2:-37811901 | MS.gene46950:CDS |
GGCCAAGAGCTTCTTACATG+TGG | 0.581552 | 3.2:-37806374 | MS.gene46950:CDS |
CTCAGGTATCATTACAGTCG+GGG | 0.583773 | 3.2:+37811566 | None:intergenic |
GACCGGACAGTCCGGATATG+GGG | 0.587343 | 3.2:-37805178 | MS.gene46950:CDS |
ATAAAAGTCATAGACGCTCT+CGG | 0.592554 | 3.2:-37805920 | MS.gene46950:CDS |
AGTTCGATCATTTGATGCTG+TGG | 0.594560 | 3.2:+37807725 | None:intergenic |
GTTTATTGCTAGTGGAAGTG+AGG | 0.595056 | 3.2:-37805859 | MS.gene46950:CDS |
GAAGAACCACATTGGTCGGA+TGG | 0.599754 | 3.2:+37811654 | None:intergenic |
GGTTGAGAGATTTATTGAAG+AGG | 0.603023 | 3.2:-37806060 | MS.gene46950:CDS |
GCTTCTTACATGTGGAGTGG+AGG | 0.605122 | 3.2:-37806366 | MS.gene46950:CDS |
GTGACAAAAGCATTTGCATG+TGG | 0.612110 | 3.2:-37806223 | MS.gene46950:CDS |
CAGTCATCACTGCAATTGTG+GGG | 0.612224 | 3.2:-37805107 | MS.gene46950:CDS |
TGACAAAAGCATTTGCATGT+GGG | 0.613809 | 3.2:-37806222 | MS.gene46950:CDS |
CAAACCATACTTCATCGTCA+TGG | 0.614532 | 3.2:+37807778 | None:intergenic |
TCCACAAGGAAACCATGCAC+AGG | 0.616331 | 3.2:+37806268 | None:intergenic |
TGTCCGGTCATCACTTGCTG+AGG | 0.619242 | 3.2:+37805192 | None:intergenic |
TACCCAAATGCATACAGCAA+TGG | 0.619355 | 3.2:-37805133 | MS.gene46950:CDS |
TTTACCACAGACGAATTCAA+CGG | 0.627972 | 3.2:+37811918 | None:intergenic |
AGAGCTTCTTACATGTGGAG+TGG | 0.628710 | 3.2:-37806369 | MS.gene46950:CDS |
ACATATGGCACAGAAGCTCA+GGG | 0.629533 | 3.2:-37805294 | MS.gene46950:CDS |
GCTCTTCAATAAAGAAACGA+AGG | 0.630901 | 3.2:-37806081 | MS.gene46950:CDS |
AAAGAAGTTGAGTCTTGGAA+AGG | 0.635577 | 3.2:-37806188 | MS.gene46950:CDS |
TTGTCCCCTTCAGATGATAG+GGG | 0.640840 | 3.2:+37812062 | None:intergenic |
GGTACTTGATGGTGATTGGG+AGG | 0.643190 | 3.2:-37811880 | MS.gene46950:CDS |
TTGCTGAGGCCAACATGTGG+GGG | 0.646817 | 3.2:+37805206 | None:intergenic |
GACTCGCTTGAAACTGCTGG+AGG | 0.656969 | 3.2:-37811607 | MS.gene46950:CDS |
TCGGCCCCTATCATCTGAAG+GGG | 0.658928 | 3.2:-37812066 | MS.gene46950:CDS |
GGATTAAACAGTCTCTCTAA+CGG | 0.662804 | 3.2:-37812137 | MS.gene46950:CDS |
GACCGGGGAAAACCTAGAGG+AGG | 0.668456 | 3.2:-37811952 | MS.gene46950:CDS |
TTGTCACCATCCGACCAATG+TGG | 0.673046 | 3.2:-37811660 | MS.gene46950:CDS |
CTCGACCAGAAGAACCACAT+TGG | 0.680833 | 3.2:+37811646 | None:intergenic |
TCGAACTGCAATCATTTGGG+AGG | 0.684790 | 3.2:-37807709 | MS.gene46950:intron |
TCAGGTATCATTACAGTCGG+GGG | 0.685221 | 3.2:+37811567 | None:intergenic |
AGTCATCACTGCAATTGTGG+GGG | 0.687440 | 3.2:-37805106 | MS.gene46950:CDS |
TTAACGGCTCCAGAATGACC+GGG | 0.689998 | 3.2:+37805253 | None:intergenic |
GTTTGTAAGGATAATCACAA+AGG | 0.694518 | 3.2:-37812000 | MS.gene46950:CDS |
CTATAGGTAGACACAAATGG+TGG | 0.695509 | 3.2:-37806464 | MS.gene46950:intron |
CATACCGTTGAATTCGTCTG+TGG | 0.696131 | 3.2:-37811922 | MS.gene46950:CDS |
GAAAGTATATACTTTCCACA+AGG | 0.711786 | 3.2:+37806254 | None:intergenic |
AAAGACCGGGGAAAACCTAG+AGG | 0.721392 | 3.2:-37811955 | MS.gene46950:CDS |
CATATGGCACAGAAGCTCAG+GGG | 0.737243 | 3.2:-37805293 | MS.gene46950:CDS |
TTTGGAAATAACAGGTGACG+GGG | 0.738612 | 3.2:-37806141 | MS.gene46950:CDS |
TTATATTCAGATCATCACTG+TGG | 0.742830 | 3.2:-37811456 | MS.gene46950:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 37805099 | 37812216 | 37805099 | ID=MS.gene46950 |
chr3.2 | mRNA | 37805099 | 37812216 | 37805099 | ID=MS.gene46950.t1;Parent=MS.gene46950 |
chr3.2 | exon | 37811425 | 37812216 | 37811425 | ID=MS.gene46950.t1.exon1;Parent=MS.gene46950.t1 |
chr3.2 | CDS | 37811425 | 37812216 | 37811425 | ID=cds.MS.gene46950.t1;Parent=MS.gene46950.t1 |
chr3.2 | exon | 37807710 | 37807811 | 37807710 | ID=MS.gene46950.t1.exon2;Parent=MS.gene46950.t1 |
chr3.2 | CDS | 37807710 | 37807811 | 37807710 | ID=cds.MS.gene46950.t1;Parent=MS.gene46950.t1 |
chr3.2 | exon | 37805851 | 37806480 | 37805851 | ID=MS.gene46950.t1.exon3;Parent=MS.gene46950.t1 |
chr3.2 | CDS | 37805851 | 37806480 | 37805851 | ID=cds.MS.gene46950.t1;Parent=MS.gene46950.t1 |
chr3.2 | exon | 37805099 | 37805320 | 37805099 | ID=MS.gene46950.t1.exon4;Parent=MS.gene46950.t1 |
chr3.2 | CDS | 37805099 | 37805320 | 37805099 | ID=cds.MS.gene46950.t1;Parent=MS.gene46950.t1 |
Gene Sequence |
Protein sequence |