Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47306.t1 | XP_013451542.1 | 96.7 | 882 | 27 | 1 | 1 | 880 | 1 | 882 | 0.00E+00 | 1671.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47306.t1 | A9LLI7 | 53.3 | 914 | 343 | 16 | 2 | 880 | 5 | 869 | 1.5e-246 | 854.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47306.t1 | A0A072UIC2 | 96.7 | 882 | 27 | 1 | 1 | 880 | 1 | 882 | 0.0e+00 | 1671.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene47306 | MS.gene050621 | PPI |
MS.gene47306 | MS.gene025936 | PPI |
MS.gene47306 | MS.gene058069 | PPI |
MS.gene47306 | MS.gene40494 | PPI |
MS.gene47306 | MS.gene21793 | PPI |
MS.gene024821 | MS.gene47306 | PPI |
MS.gene47306 | MS.gene22822 | PPI |
MS.gene47306 | MS.gene024471 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47306.t1 | MTR_6g027760 | 96.712 | 882 | 27 | 1 | 1 | 880 | 1 | 882 | 0.0 | 1774 |
MS.gene47306.t1 | MTR_6g027760 | 97.179 | 638 | 16 | 1 | 1 | 636 | 1 | 638 | 0.0 | 1295 |
MS.gene47306.t1 | MTR_7g086370 | 52.668 | 731 | 283 | 12 | 30 | 743 | 8 | 692 | 0.0 | 704 |
MS.gene47306.t1 | MTR_7g086370 | 58.172 | 569 | 194 | 8 | 30 | 588 | 8 | 542 | 0.0 | 668 |
MS.gene47306.t1 | MTR_7g086370 | 58.672 | 467 | 151 | 7 | 26 | 484 | 4 | 436 | 0.0 | 553 |
MS.gene47306.t1 | MTR_4g048230 | 36.207 | 348 | 202 | 8 | 194 | 524 | 49 | 393 | 5.96e-57 | 211 |
MS.gene47306.t1 | MTR_4g048230 | 36.207 | 348 | 202 | 8 | 194 | 524 | 49 | 393 | 7.02e-57 | 211 |
MS.gene47306.t1 | MTR_7g087760 | 61.165 | 103 | 37 | 2 | 182 | 281 | 32 | 134 | 5.27e-32 | 126 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47306.t1 | AT5G35910 | 53.603 | 916 | 337 | 17 | 2 | 880 | 5 | 869 | 0.0 | 895 |
MS.gene47306.t1 | AT1G54440 | 59.004 | 522 | 164 | 7 | 159 | 679 | 18 | 490 | 0.0 | 617 |
MS.gene47306.t1 | AT1G54440 | 57.974 | 533 | 205 | 6 | 159 | 679 | 18 | 543 | 0.0 | 615 |
MS.gene47306.t1 | AT1G54440 | 68.357 | 414 | 128 | 2 | 159 | 571 | 18 | 429 | 0.0 | 615 |
MS.gene47306.t1 | AT1G54440 | 68.357 | 414 | 128 | 2 | 159 | 571 | 18 | 429 | 0.0 | 613 |
MS.gene47306.t1 | AT1G54440 | 68.357 | 414 | 128 | 2 | 159 | 571 | 18 | 429 | 0.0 | 612 |
MS.gene47306.t1 | AT2G32415 | 44.558 | 294 | 136 | 8 | 251 | 524 | 112 | 398 | 3.53e-60 | 221 |
MS.gene47306.t1 | AT2G32415 | 44.330 | 291 | 140 | 7 | 251 | 524 | 112 | 397 | 9.87e-60 | 219 |
MS.gene47306.t1 | AT2G32415 | 44.330 | 291 | 140 | 7 | 251 | 524 | 112 | 397 | 1.17e-59 | 219 |
Find 216 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCATATTGGGCCCCATTTA+AGG | 0.102573 | 6.4:-2988134 | MS.gene47306:CDS |
GATGGATTTGAGATGGTTTA+TGG | 0.145469 | 6.4:-2990514 | MS.gene47306:CDS |
CCTTGAAGACTTCCCTTAAA+TGG | 0.178270 | 6.4:+2988121 | None:intergenic |
AACTCATACCTTCATATATA+TGG | 0.183702 | 6.4:-2985290 | MS.gene47306:CDS |
AACCTTTGGGTTCTGCGTTT+GGG | 0.220277 | 6.4:+2983718 | None:intergenic |
CAACCTTTGGGTTCTGCGTT+TGG | 0.231182 | 6.4:+2983717 | None:intergenic |
GGCTTCAAAGGTGTTAAAAT+TGG | 0.240848 | 6.4:-2987651 | MS.gene47306:CDS |
TGGCGCACTCTCTACATTAA+AGG | 0.249593 | 6.4:-2983486 | MS.gene47306:intron |
CCAGGAAAAGCTATCTGTTT+TGG | 0.250155 | 6.4:-2989073 | MS.gene47306:intron |
TTGAAATATATAGGTTGATT+TGG | 0.252839 | 6.4:-2988253 | MS.gene47306:intron |
CAGCACGACCATCACAATTC+TGG | 0.264551 | 6.4:+2982645 | None:intergenic |
TTGAAACTCCGCATTCATAT+TGG | 0.281478 | 6.4:-2988147 | MS.gene47306:CDS |
AGCTCAGATGTGACATTATT+GGG | 0.284320 | 6.4:+2983557 | None:intergenic |
GAGCTCAGATGTGACATTAT+TGG | 0.284368 | 6.4:+2983556 | None:intergenic |
GAAGCTTGGCCTTGATAAAA+AGG | 0.293717 | 6.4:-2983295 | MS.gene47306:intron |
AGGGAAGGTGGTTGGGGTGG+AGG | 0.295477 | 6.4:-2990470 | MS.gene47306:CDS |
CTACCTTGTTGAAATTGTTT+AGG | 0.309737 | 6.4:+2982557 | None:intergenic |
GAGAGGGAAGGTGGTTGGGG+TGG | 0.314185 | 6.4:-2990473 | MS.gene47306:CDS |
GTGGGAGAGGGAAGGTGGTT+GGG | 0.325054 | 6.4:-2990477 | MS.gene47306:CDS |
GGGTTCTGCGTTTGGGGTGC+GGG | 0.331706 | 6.4:+2983725 | None:intergenic |
GGTGGTTGGGGTGGAGGATT+CGG | 0.332207 | 6.4:-2990464 | MS.gene47306:CDS |
TGGGAGAGGGAAGGTGGTTG+GGG | 0.338865 | 6.4:-2990476 | MS.gene47306:CDS |
TGAAACTCCGCATTCATATT+GGG | 0.339548 | 6.4:-2988146 | MS.gene47306:CDS |
CGTGCAGCATTTCCTGCTTC+CGG | 0.344789 | 6.4:-2982530 | MS.gene47306:CDS |
AGAAGAAGTCAAAGATTTGA+AGG | 0.347233 | 6.4:-2988974 | MS.gene47306:CDS |
AAGAAGAAGAAAGGTGGGAG+AGG | 0.349770 | 6.4:-2990490 | MS.gene47306:CDS |
GCAATGAACCATGTGAAGTT+TGG | 0.359777 | 6.4:-2982692 | MS.gene47306:CDS |
AACAATTTCAACAAGGTAGA+AGG | 0.361242 | 6.4:-2982553 | MS.gene47306:CDS |
CCAAGCTTCCTCTTTGAAGC+TGG | 0.362752 | 6.4:+2983309 | None:intergenic |
GCTTCGAATTCGCCATTTCC+TGG | 0.363155 | 6.4:-2990700 | MS.gene47306:CDS |
ATGGATTTGAGATGGTTTAT+GGG | 0.370997 | 6.4:-2990513 | MS.gene47306:CDS |
TGGGTTCTGCGTTTGGGGTG+CGG | 0.371169 | 6.4:+2983724 | None:intergenic |
GAATGTGAATGATGACGTTT+TGG | 0.378867 | 6.4:-2990647 | MS.gene47306:CDS |
CTTGAAGACTTCCCTTAAAT+GGG | 0.379705 | 6.4:+2988122 | None:intergenic |
AACGGGAATGGGAGAGTGAA+TGG | 0.380317 | 6.4:-2990559 | MS.gene47306:CDS |
ATGAGAGTGGACCGGAGGTT+AGG | 0.380619 | 6.4:+2990866 | None:intergenic |
AATAAAACTGTTCTTGAAAT+CGG | 0.382505 | 6.4:-2984841 | MS.gene47306:intron |
TTGTGCAGGTTGCAAGGGGC+TGG | 0.383702 | 6.4:-2985081 | MS.gene47306:intron |
TCAGAACTTTCAGGTGCCTT+TGG | 0.390098 | 6.4:+2985731 | None:intergenic |
TCCAGATTGTGTTCAAGATA+TGG | 0.396042 | 6.4:+2984662 | None:intergenic |
CAAGCTTCCTCTTTGAAGCT+GGG | 0.398298 | 6.4:+2983310 | None:intergenic |
GAATGTTGCACTGCGATTGC+CGG | 0.399481 | 6.4:+2982511 | None:intergenic |
TCAACAGCTTGCCATTGTTT+CGG | 0.400022 | 6.4:-2985049 | MS.gene47306:intron |
AAGTGCGGCGGTTGCGGTGG+TGG | 0.403423 | 6.4:+2990894 | None:intergenic |
GGTTTGAAGTGCGGCGGTTG+CGG | 0.406675 | 6.4:+2990888 | None:intergenic |
GGTGGAGGATTCGGAGATTA+CGG | 0.410702 | 6.4:-2990455 | MS.gene47306:CDS |
TCCATATCTTGAACACAATC+TGG | 0.411490 | 6.4:-2984663 | MS.gene47306:CDS |
ATTGCTGCTTCATAATCATA+TGG | 0.412607 | 6.4:+2982710 | None:intergenic |
CACGCGAGATTTCATCGATT+GGG | 0.412659 | 6.4:+2990755 | None:intergenic |
GTAGTCTCCAATCAGCATTC+TGG | 0.412986 | 6.4:+2987465 | None:intergenic |
CCATTTAAGGGAAGTCTTCA+AGG | 0.428556 | 6.4:-2988121 | MS.gene47306:CDS |
GCGGGATCTTCAGTCGTAAC+AGG | 0.433708 | 6.4:+2983743 | None:intergenic |
TGCAACCAAACATGCTCAAA+AGG | 0.433863 | 6.4:+2990301 | None:intergenic |
ATCTTGATGATGGTTATGAT+TGG | 0.435150 | 6.4:-2990675 | MS.gene47306:CDS |
TCATATTGGGCCCCATTTAA+GGG | 0.437250 | 6.4:-2988133 | MS.gene47306:CDS |
GGTGGGAGAGGGAAGGTGGT+TGG | 0.438397 | 6.4:-2990478 | MS.gene47306:CDS |
CTTAACATCTCATCAGGAAT+CGG | 0.441444 | 6.4:+2987440 | None:intergenic |
GAAAGGTGGGAGAGGGAAGG+TGG | 0.445479 | 6.4:-2990482 | MS.gene47306:CDS |
AGAAGAAGAAAGGTGGGAGA+GGG | 0.448193 | 6.4:-2990489 | MS.gene47306:CDS |
GCGTTCTGTTAATGAATTTG+CGG | 0.451542 | 6.4:-2988935 | MS.gene47306:intron |
CTTCTTCTACAAGCTTGAAA+GGG | 0.452246 | 6.4:+2988989 | None:intergenic |
CGTAGCTTGTTTGTAGTGAC+AGG | 0.454362 | 6.4:+2984707 | None:intergenic |
TTGTACCTTAACATCTCATC+AGG | 0.456048 | 6.4:+2987434 | None:intergenic |
CAGATAGTGTGTATCTTCTC+TGG | 0.459641 | 6.4:+2985796 | None:intergenic |
CGATTCCTGATGAGATGTTA+AGG | 0.462250 | 6.4:-2987439 | MS.gene47306:intron |
GTGGAAGCTGGATCAGAAAC+AGG | 0.465169 | 6.4:+2982989 | None:intergenic |
ACTCATACCTTCATATATAT+GGG | 0.465497 | 6.4:-2985289 | MS.gene47306:intron |
TTTAGAGCGGATGTGGAAGC+TGG | 0.466298 | 6.4:+2982977 | None:intergenic |
GAAAGGGGTGCTTTCTAATG+AGG | 0.466368 | 6.4:+2989005 | None:intergenic |
TTGATCGTGATCGACGTTCA+TGG | 0.467370 | 6.4:+2990927 | None:intergenic |
ATTTGGAGCATAATCAATAT+CGG | 0.467524 | 6.4:-2988236 | MS.gene47306:CDS |
AATCTCATTTAGAGCGGATG+TGG | 0.467722 | 6.4:+2982970 | None:intergenic |
AGGAGGCAAAGAACGGGAAT+GGG | 0.469042 | 6.4:-2990570 | MS.gene47306:CDS |
AGCACGACCATCACAATTCT+GGG | 0.470356 | 6.4:+2982646 | None:intergenic |
TTGCTTTGTTTAGGCTTCAA+AGG | 0.471995 | 6.4:-2987663 | MS.gene47306:intron |
TGAGAGTGGACCGGAGGTTA+GGG | 0.474334 | 6.4:+2990867 | None:intergenic |
ATGAATTTCGCGAGTATCGA+AGG | 0.477753 | 6.4:-2990603 | MS.gene47306:CDS |
ATCCCTAGTCTGCTCTGAAA+TGG | 0.478916 | 6.4:+2983517 | None:intergenic |
AAATCCGAGTGCTTCAACTT+CGG | 0.480541 | 6.4:-2982864 | MS.gene47306:CDS |
GAGGAGGCAAAGAACGGGAA+TGG | 0.481926 | 6.4:-2990571 | MS.gene47306:CDS |
ACATTAGGAGTTTCTACTAC+AGG | 0.482202 | 6.4:+2983028 | None:intergenic |
TGTATCACTAACCTTCCTCT+TGG | 0.483024 | 6.4:+2988092 | None:intergenic |
TCATCAAGATCACCAGGAAA+TGG | 0.483073 | 6.4:+2990688 | None:intergenic |
AAAGATAAGAGGGCGGTTGG+AGG | 0.486512 | 6.4:-2990406 | MS.gene47306:CDS |
TTGAAGTGCGGCGGTTGCGG+TGG | 0.486632 | 6.4:+2990891 | None:intergenic |
ATGGGAAGAAGAAGAAAGGT+GGG | 0.487754 | 6.4:-2990495 | MS.gene47306:CDS |
TACGGTGGCCGAGGGTGTAA+AGG | 0.488798 | 6.4:-2990437 | MS.gene47306:CDS |
TTCGGAGATTACGGTGGCCG+AGG | 0.489048 | 6.4:-2990446 | MS.gene47306:CDS |
CATCGCCACCTTTACACCCT+CGG | 0.489656 | 6.4:+2990429 | None:intergenic |
GACAGTTCCGAGAGAGACTT+AGG | 0.492526 | 6.4:+2982830 | None:intergenic |
TTTCCTGGTGATCTTGATGA+TGG | 0.493798 | 6.4:-2990685 | MS.gene47306:CDS |
CCAGATACCAGAATGCTGAT+TGG | 0.493954 | 6.4:-2987472 | MS.gene47306:intron |
ACCTTTGGGTTCTGCGTTTG+GGG | 0.494577 | 6.4:+2983719 | None:intergenic |
GCACTGCGATTGCCGGAAGC+AGG | 0.494589 | 6.4:+2982518 | None:intergenic |
CCAGCTTCAAAGAGGAAGCT+TGG | 0.495654 | 6.4:-2983309 | MS.gene47306:CDS |
CAATCCATGCTTGAAGCAAT+CGG | 0.495693 | 6.4:-2990727 | MS.gene47306:CDS |
ACTTCTTCTACAAGCTTGAA+AGG | 0.498506 | 6.4:+2988988 | None:intergenic |
GAGAAGAGGAGGCAAAGAAC+GGG | 0.498619 | 6.4:-2990576 | MS.gene47306:CDS |
GAAGAAAGGTGGGAGAGGGA+AGG | 0.499296 | 6.4:-2990485 | MS.gene47306:CDS |
GCAGAAGTTTGTTCATCCAT+TGG | 0.502726 | 6.4:-2990263 | MS.gene47306:intron |
AGAGGAGTATCAGAACTTTC+AGG | 0.505570 | 6.4:+2985722 | None:intergenic |
GAGGCAATGATGGTGGATGA+TGG | 0.505739 | 6.4:-2990532 | MS.gene47306:CDS |
AAATGGTGAGACTTTCCCTT+GGG | 0.506396 | 6.4:+2983534 | None:intergenic |
GTGTGGCTTCAACGAGACTT+TGG | 0.507802 | 6.4:-2987968 | MS.gene47306:CDS |
TACAAACAAGCTACGGCGAT+TGG | 0.509048 | 6.4:-2984699 | MS.gene47306:CDS |
TAAGAGGGCGGTTGGAGGGA+AGG | 0.511174 | 6.4:-2990401 | MS.gene47306:CDS |
CGTGCAGAGGATGAGAGTAC+TGG | 0.511264 | 6.4:-2984877 | MS.gene47306:CDS |
TTGAGCATGTTTGGTTGCAG+AGG | 0.511268 | 6.4:-2990297 | MS.gene47306:CDS |
AAGATAAGAGGGCGGTTGGA+GGG | 0.513138 | 6.4:-2990405 | MS.gene47306:CDS |
CAGACTAGGGATGCAAATGT+TGG | 0.517351 | 6.4:-2983506 | MS.gene47306:CDS |
TGAAAGTTCTGATACTCCTC+TGG | 0.517597 | 6.4:-2985720 | MS.gene47306:CDS |
ACGGGAATGGGAGAGTGAAT+GGG | 0.517843 | 6.4:-2990558 | MS.gene47306:CDS |
TCACGCGAGATTTCATCGAT+TGG | 0.517911 | 6.4:+2990754 | None:intergenic |
TCACCATTTCAGAGCAGACT+AGG | 0.519614 | 6.4:-2983520 | MS.gene47306:CDS |
TAATATGTTTGACACTGGCC+AGG | 0.521267 | 6.4:-2987933 | MS.gene47306:intron |
TCACTAACCTTCCTCTTGGA+AGG | 0.523807 | 6.4:+2988096 | None:intergenic |
TTAACATCTCATCAGGAATC+GGG | 0.524383 | 6.4:+2987441 | None:intergenic |
ATAATGCTAGACACCGATAC+AGG | 0.525595 | 6.4:-2982947 | MS.gene47306:CDS |
TGGGAGAGTGAATGGGAATG+AGG | 0.525813 | 6.4:-2990551 | MS.gene47306:CDS |
GTTTGAATTCGTTGAAATTG+CGG | 0.525907 | 6.4:+2990779 | None:intergenic |
AAGAAGAAATCTCTCTCCGA+TGG | 0.527652 | 6.4:+2990805 | None:intergenic |
TAAATTAAACAGGTTATGCA+TGG | 0.528172 | 6.4:-2988007 | MS.gene47306:intron |
TTCTGATACTCCTCTGGTAG+AGG | 0.529021 | 6.4:-2985714 | MS.gene47306:intron |
ATGAAAGATAAGAGGGCGGT+TGG | 0.529366 | 6.4:-2990409 | MS.gene47306:CDS |
TGGTTGCAGAGGAGTGATGA+TGG | 0.533011 | 6.4:-2990286 | MS.gene47306:CDS |
AATCAATATCGGTCTTTCCA+AGG | 0.533016 | 6.4:-2988225 | MS.gene47306:CDS |
AGGTGGCGATGAAAGATAAG+AGG | 0.533401 | 6.4:-2990417 | MS.gene47306:CDS |
CCATCACAATTCTGGGAGGA+TGG | 0.533429 | 6.4:+2982653 | None:intergenic |
GCACCCGCAAATGAATGAAA+AGG | 0.535241 | 6.4:+2983067 | None:intergenic |
TAACTTATCTTCCTTGCCAA+AGG | 0.536257 | 6.4:-2985747 | MS.gene47306:CDS |
GAATGGGAATGAGGCAATGA+TGG | 0.536658 | 6.4:-2990542 | MS.gene47306:CDS |
ATCCTCGTCTGCACCTGTAT+CGG | 0.536796 | 6.4:+2982934 | None:intergenic |
GGTGGATGATGGATTTGAGA+TGG | 0.538645 | 6.4:-2990521 | MS.gene47306:CDS |
AGAAAACCCCACCGAGCAGA+TGG | 0.539086 | 6.4:-2982891 | MS.gene47306:CDS |
AGTCAAAGATTTGAAGGAGA+TGG | 0.540945 | 6.4:-2988968 | MS.gene47306:CDS |
GGTTGCAGGGGCTGTGTGAG+TGG | 0.542634 | 6.4:-2984915 | MS.gene47306:intron |
AAGAAGAAGCGTTCAACGAT+AGG | 0.546184 | 6.4:-2982602 | MS.gene47306:CDS |
GAGTGCTTCAACTTCGGATG+AGG | 0.547082 | 6.4:-2982858 | MS.gene47306:CDS |
GCATCAAGCAAGTCAAACCT+TGG | 0.548236 | 6.4:+2988208 | None:intergenic |
AATTGTTTAGGCAAATCACT+TGG | 0.551556 | 6.4:+2982569 | None:intergenic |
ACCGACTATTCGAAGGCCGC+AGG | 0.554849 | 6.4:-2990359 | MS.gene47306:CDS |
CGAATAGTCGGTATATGAAA+CGG | 0.556737 | 6.4:+2990370 | None:intergenic |
GGCGGTTGGAGGGAAGGCGA+AGG | 0.557044 | 6.4:-2990395 | MS.gene47306:CDS |
CGAGAAGAGGAGGCAAAGAA+CGG | 0.563042 | 6.4:-2990577 | MS.gene47306:CDS |
GAAATGGTGAGACTTTCCCT+TGG | 0.563297 | 6.4:+2983533 | None:intergenic |
GTATCGAAGGATTCGAGAAG+AGG | 0.564200 | 6.4:-2990590 | MS.gene47306:CDS |
GTTGCGGTGGTGGTGTGCGG+TGG | 0.565208 | 6.4:+2990904 | None:intergenic |
CACCGATACAGGTGCAGACG+AGG | 0.565494 | 6.4:-2982936 | MS.gene47306:CDS |
GCGGTTGCGGTGGTGGTGTG+CGG | 0.565723 | 6.4:+2990901 | None:intergenic |
TCCTGCGGCCTTCGAATAGT+CGG | 0.565845 | 6.4:+2990358 | None:intergenic |
GCTGCTCAACAGTTGAAAGA+AGG | 0.567354 | 6.4:-2984584 | MS.gene47306:CDS |
AGACGAACCCATATATATGA+AGG | 0.567693 | 6.4:+2985282 | None:intergenic |
GGAGGTTAGGGTTTGAAGTG+CGG | 0.567713 | 6.4:+2990879 | None:intergenic |
GGGAAATGGAGCTACTGTCC+AGG | 0.568280 | 6.4:-2983376 | MS.gene47306:CDS |
CAAGGACCCTTCCAAGAGGA+AGG | 0.568861 | 6.4:-2988103 | MS.gene47306:intron |
TGGGAATGAGGCAATGATGG+TGG | 0.570048 | 6.4:-2990539 | MS.gene47306:CDS |
TACTGATGATGAGAGTGGAC+CGG | 0.576204 | 6.4:+2990858 | None:intergenic |
TATGGGAAGAAGAAGAAAGG+TGG | 0.578035 | 6.4:-2990496 | MS.gene47306:CDS |
AAAGGGGTGCTTTCTAATGA+GGG | 0.581990 | 6.4:+2989006 | None:intergenic |
GTTTATGGGAAGAAGAAGAA+AGG | 0.582971 | 6.4:-2990499 | MS.gene47306:CDS |
CTGTCACTACAAACAAGCTA+CGG | 0.589432 | 6.4:-2984706 | MS.gene47306:CDS |
ACTTTCAGGTGCCTTTGGCA+AGG | 0.590327 | 6.4:+2985736 | None:intergenic |
CACTAACCTTCCTCTTGGAA+GGG | 0.590411 | 6.4:+2988097 | None:intergenic |
TTCATATACCGACTATTCGA+AGG | 0.592246 | 6.4:-2990366 | MS.gene47306:CDS |
ATGTCACATCTGAGCTCCCA+AGG | 0.593539 | 6.4:-2983550 | MS.gene47306:CDS |
GTTTGTAATATGTTTGACAC+TGG | 0.593699 | 6.4:-2987938 | MS.gene47306:CDS |
GGATGAACCTAAGTCTCTCT+CGG | 0.594231 | 6.4:-2982837 | MS.gene47306:CDS |
CACCATTTCAGAGCAGACTA+GGG | 0.595124 | 6.4:-2983519 | MS.gene47306:CDS |
TAACCATCATCAAGATCACC+AGG | 0.595832 | 6.4:+2990682 | None:intergenic |
TCGAAGGATTCGAGAAGAGG+AGG | 0.596007 | 6.4:-2990587 | MS.gene47306:CDS |
CCATCCTCCCAGAATTGTGA+TGG | 0.600937 | 6.4:-2982653 | MS.gene47306:CDS |
ACAGAAACTCACCGAAACAA+TGG | 0.600974 | 6.4:+2985038 | None:intergenic |
TTCTTCTACAAGCTTGAAAG+GGG | 0.601284 | 6.4:+2988990 | None:intergenic |
GGTTGCAGAGGAGTGATGAT+GGG | 0.602552 | 6.4:-2990285 | MS.gene47306:CDS |
TACACCGATTGCTTCAAGCA+TGG | 0.604772 | 6.4:+2990723 | None:intergenic |
AGTGCCCCAAAAGCACCACC+AGG | 0.606319 | 6.4:+2983342 | None:intergenic |
GCACTTCAAACCCTAACCTC+CGG | 0.607758 | 6.4:-2990877 | MS.gene47306:CDS |
TCGGAGATTACGGTGGCCGA+GGG | 0.608587 | 6.4:-2990445 | MS.gene47306:CDS |
TTCTTCACGCTGTATCCCAT+CGG | 0.612000 | 6.4:-2990821 | MS.gene47306:CDS |
CGACATTGTTGCTCGTGCAG+AGG | 0.612978 | 6.4:-2984890 | MS.gene47306:CDS |
TGGGATACAGCGTGAAGAAG+CGG | 0.613295 | 6.4:+2990825 | None:intergenic |
AGAAGAAATCTCTCTCCGAT+GGG | 0.614993 | 6.4:+2990806 | None:intergenic |
ACCCCAAACGCAGAACCCAA+AGG | 0.617565 | 6.4:-2983720 | MS.gene47306:intron |
AGGGGTGCTTTCTAATGAGG+GGG | 0.618101 | 6.4:+2989008 | None:intergenic |
TGATGGTCGTGCTGAGAAAG+AGG | 0.621332 | 6.4:-2982636 | MS.gene47306:CDS |
AAGCGTTCAACGATAGGAGA+GGG | 0.625904 | 6.4:-2982596 | MS.gene47306:CDS |
TCATCCGAAGTTGAAGCACT+CGG | 0.626314 | 6.4:+2982860 | None:intergenic |
TTGAAGACTTCCCTTAAATG+GGG | 0.630407 | 6.4:+2988123 | None:intergenic |
GGTTAGGGTTTGAAGTGCGG+CGG | 0.632511 | 6.4:+2990882 | None:intergenic |
GGTGGCCGAGGGTGTAAAGG+TGG | 0.633133 | 6.4:-2990434 | MS.gene47306:CDS |
CATTATAATCTCATTTAGAG+CGG | 0.638913 | 6.4:+2982964 | None:intergenic |
GAAGCGTTCAACGATAGGAG+AGG | 0.642542 | 6.4:-2982597 | MS.gene47306:CDS |
TAAGTAGTTACCTCTACCAG+AGG | 0.644023 | 6.4:+2985704 | None:intergenic |
GGTGGCGATGAAAGATAAGA+GGG | 0.645361 | 6.4:-2990416 | MS.gene47306:CDS |
TGTATATATATGATACAATG+AGG | 0.648459 | 6.4:-2985772 | MS.gene47306:CDS |
TAAACAGGTTATGCATGGTG+CGG | 0.651251 | 6.4:-2988002 | MS.gene47306:intron |
AAGGGGTGCTTTCTAATGAG+GGG | 0.656030 | 6.4:+2989007 | None:intergenic |
GAAAATACTACTTACTGTGG+TGG | 0.658324 | 6.4:+2984556 | None:intergenic |
AAGAAAACTGAACAAGCTAG+TGG | 0.662783 | 6.4:-2982749 | MS.gene47306:CDS |
TGGGGAACCCAGCTTCAAAG+AGG | 0.664226 | 6.4:-2983317 | MS.gene47306:CDS |
CTGAATTGAATGTCTGATGA+CGG | 0.666376 | 6.4:+2984628 | None:intergenic |
TGATGATGAGAGTGGACCGG+AGG | 0.670700 | 6.4:+2990861 | None:intergenic |
GAAGCTACTGATGATGAGAG+TGG | 0.675485 | 6.4:+2990853 | None:intergenic |
GCTGAGAAAGAGGACGCAGG+TGG | 0.677640 | 6.4:-2982626 | MS.gene47306:CDS |
GCTTGATGCAAATATCAACA+AGG | 0.677925 | 6.4:-2988194 | MS.gene47306:CDS |
CGTGCTGAGAAAGAGGACGC+AGG | 0.681833 | 6.4:-2982629 | MS.gene47306:CDS |
GGGGTGCTTTCTAATGAGGG+GGG | 0.685045 | 6.4:+2989009 | None:intergenic |
TTGCCTAAACAATTTCAACA+AGG | 0.687999 | 6.4:-2982560 | MS.gene47306:CDS |
GGAGGATTCGGAGATTACGG+TGG | 0.691346 | 6.4:-2990452 | MS.gene47306:CDS |
TGTCACATCTGAGCTCCCAA+GGG | 0.692775 | 6.4:-2983549 | MS.gene47306:CDS |
AATGGGGCCCAATATGAATG+CGG | 0.696608 | 6.4:+2988139 | None:intergenic |
ATTATACTAAACTCATCCTG+CGG | 0.699046 | 6.4:+2990343 | None:intergenic |
TCTTCAAGGACCCTTCCAAG+AGG | 0.704988 | 6.4:-2988107 | MS.gene47306:CDS |
GGCGATGAAAGATAAGAGGG+CGG | 0.714073 | 6.4:-2990413 | MS.gene47306:CDS |
GTGCGGATAAAGATATTGTG+TGG | 0.752716 | 6.4:-2987985 | MS.gene47306:CDS |
ACGACCATCACAATTCTGGG+AGG | 0.760116 | 6.4:+2982649 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 2982505 | 2990947 | 2982505 | ID=MS.gene47306 |
chr6.4 | mRNA | 2982505 | 2990947 | 2982505 | ID=MS.gene47306.t1;Parent=MS.gene47306 |
chr6.4 | exon | 2990264 | 2990947 | 2990264 | ID=MS.gene47306.t1.exon1;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2990264 | 2990947 | 2990264 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2988936 | 2989091 | 2988936 | ID=MS.gene47306.t1.exon2;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2988936 | 2989091 | 2988936 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2988104 | 2988262 | 2988104 | ID=MS.gene47306.t1.exon3;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2988104 | 2988262 | 2988104 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2987934 | 2988017 | 2987934 | ID=MS.gene47306.t1.exon4;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2987934 | 2988017 | 2987934 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2987593 | 2987672 | 2987593 | ID=MS.gene47306.t1.exon5;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2987593 | 2987672 | 2987593 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2987440 | 2987490 | 2987440 | ID=MS.gene47306.t1.exon6;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2987440 | 2987490 | 2987440 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2985715 | 2985823 | 2985715 | ID=MS.gene47306.t1.exon7;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2985715 | 2985823 | 2985715 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2985290 | 2985372 | 2985290 | ID=MS.gene47306.t1.exon8;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2985290 | 2985372 | 2985290 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2985050 | 2985095 | 2985050 | ID=MS.gene47306.t1.exon9;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2985050 | 2985095 | 2985050 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2984842 | 2984929 | 2984842 | ID=MS.gene47306.t1.exon10;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2984842 | 2984929 | 2984842 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2984571 | 2984740 | 2984571 | ID=MS.gene47306.t1.exon11;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2984571 | 2984740 | 2984571 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2983721 | 2983780 | 2983721 | ID=MS.gene47306.t1.exon12;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2983721 | 2983780 | 2983721 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2983487 | 2983624 | 2983487 | ID=MS.gene47306.t1.exon13;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2983487 | 2983624 | 2983487 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2983296 | 2983397 | 2983296 | ID=MS.gene47306.t1.exon14;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2983296 | 2983397 | 2983296 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
chr6.4 | exon | 2982505 | 2983137 | 2982505 | ID=MS.gene47306.t1.exon15;Parent=MS.gene47306.t1 |
chr6.4 | CDS | 2982505 | 2983137 | 2982505 | ID=cds.MS.gene47306.t1;Parent=MS.gene47306.t1 |
Gene Sequence |
Protein sequence |