Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47334.t1 | XP_003592350.1 | 77.1 | 354 | 58 | 4 | 20 | 367 | 4 | 340 | 7.60E-143 | 516.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47334.t1 | Q9FLH8 | 63.9 | 338 | 100 | 3 | 30 | 361 | 13 | 334 | 3.2e-113 | 409.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47334.t1 | G7IC32 | 77.1 | 354 | 58 | 4 | 20 | 367 | 4 | 340 | 5.5e-143 | 516.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47334 | MS.gene003877 | PPI |
| MS.gene85276 | MS.gene47334 | PPI |
| MS.gene47334 | MS.gene052011 | PPI |
| MS.gene032177 | MS.gene47334 | PPI |
| MS.gene056386 | MS.gene47334 | PPI |
| MS.gene98726 | MS.gene47334 | PPI |
| MS.gene28335 | MS.gene47334 | PPI |
| MS.gene46881 | MS.gene47334 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47334.t1 | MTR_1g101950 | 77.465 | 355 | 57 | 4 | 19 | 367 | 3 | 340 | 0.0 | 532 |
| MS.gene47334.t1 | MTR_6g089480 | 72.121 | 330 | 70 | 3 | 47 | 370 | 1 | 314 | 6.00e-166 | 466 |
| MS.gene47334.t1 | MTR_1g069490 | 66.272 | 338 | 78 | 2 | 30 | 367 | 100 | 401 | 2.54e-146 | 420 |
| MS.gene47334.t1 | MTR_6g089480 | 72.222 | 288 | 58 | 3 | 47 | 328 | 1 | 272 | 1.55e-141 | 403 |
| MS.gene47334.t1 | MTR_6g089480 | 72.727 | 286 | 56 | 3 | 47 | 326 | 1 | 270 | 2.20e-141 | 402 |
| MS.gene47334.t1 | MTR_1g069745 | 69.453 | 311 | 62 | 4 | 65 | 370 | 9 | 291 | 6.05e-139 | 397 |
| MS.gene47334.t1 | MTR_5g079460 | 63.142 | 331 | 99 | 4 | 38 | 362 | 65 | 378 | 2.09e-136 | 394 |
| MS.gene47334.t1 | MTR_1g057810 | 63.897 | 349 | 96 | 6 | 22 | 363 | 235 | 560 | 1.15e-133 | 394 |
| MS.gene47334.t1 | MTR_7g075860 | 56.024 | 332 | 122 | 4 | 40 | 363 | 41 | 356 | 2.43e-122 | 357 |
| MS.gene47334.t1 | MTR_1g076850 | 54.079 | 331 | 128 | 5 | 40 | 364 | 8 | 320 | 6.24e-121 | 352 |
| MS.gene47334.t1 | MTR_1g105150 | 60.458 | 349 | 94 | 7 | 22 | 363 | 235 | 546 | 1.27e-119 | 357 |
| MS.gene47334.t1 | MTR_4g067310 | 55.193 | 337 | 127 | 5 | 38 | 368 | 13 | 331 | 9.52e-118 | 345 |
| MS.gene47334.t1 | MTR_2g098950 | 54.054 | 333 | 129 | 5 | 38 | 364 | 12 | 326 | 4.00e-117 | 343 |
| MS.gene47334.t1 | MTR_1g054730 | 57.914 | 278 | 70 | 3 | 87 | 364 | 157 | 387 | 2.44e-90 | 277 |
| MS.gene47334.t1 | MTR_0046s0180 | 77.670 | 103 | 23 | 0 | 262 | 364 | 7 | 109 | 5.31e-51 | 166 |
| MS.gene47334.t1 | MTR_4g019165 | 27.882 | 373 | 196 | 8 | 40 | 358 | 93 | 446 | 2.25e-33 | 129 |
| MS.gene47334.t1 | MTR_5g044990 | 26.911 | 327 | 194 | 6 | 57 | 359 | 245 | 550 | 9.91e-33 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47334.t1 | AT5G51830 | 65.089 | 338 | 96 | 3 | 30 | 361 | 13 | 334 | 1.33e-151 | 431 |
| MS.gene47334.t1 | AT5G51830 | 65.089 | 338 | 96 | 3 | 30 | 361 | 13 | 334 | 1.33e-151 | 431 |
| MS.gene47334.t1 | AT1G66430 | 58.470 | 366 | 123 | 5 | 17 | 370 | 36 | 384 | 3.32e-142 | 409 |
| MS.gene47334.t1 | AT4G10260 | 56.173 | 324 | 118 | 5 | 40 | 357 | 6 | 311 | 2.33e-119 | 348 |
| MS.gene47334.t1 | AT1G06030 | 52.786 | 341 | 137 | 4 | 30 | 364 | 1 | 323 | 3.06e-117 | 343 |
| MS.gene47334.t1 | AT2G31390 | 53.116 | 337 | 134 | 5 | 34 | 364 | 3 | 321 | 4.19e-115 | 338 |
| MS.gene47334.t1 | AT3G59480 | 52.853 | 333 | 133 | 5 | 35 | 361 | 5 | 319 | 5.99e-114 | 335 |
| MS.gene47334.t1 | AT1G06020 | 52.711 | 332 | 133 | 4 | 39 | 364 | 9 | 322 | 1.63e-113 | 334 |
| MS.gene47334.t1 | AT1G50390 | 47.561 | 164 | 55 | 1 | 201 | 364 | 7 | 139 | 5.58e-41 | 141 |
| MS.gene47334.t1 | AT3G54090 | 28.763 | 372 | 193 | 7 | 40 | 358 | 103 | 455 | 4.48e-35 | 134 |
| MS.gene47334.t1 | AT1G69200 | 26.724 | 348 | 191 | 9 | 40 | 344 | 206 | 532 | 5.20e-29 | 118 |
Find 84 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCGAAATATAATGCATTT+TGG | 0.175412 | 1.1:+46329332 | None:intergenic |
| CAATTAGAAGCTTGAGATTA+GGG | 0.269578 | 1.1:+46329859 | None:intergenic |
| TAGGTTGGAGCAGATGAATT+TGG | 0.306305 | 1.1:-46330595 | MS.gene47334:CDS |
| TCCTAGTGCTCATATGCTTC+TGG | 0.312631 | 1.1:-46330437 | MS.gene47334:CDS |
| CAGGCTAAAATATTCCATTA+TGG | 0.312878 | 1.1:-46330292 | MS.gene47334:CDS |
| AGTGGACTGGTTGTTTGTTT+TGG | 0.315125 | 1.1:-46331272 | MS.gene47334:CDS |
| AGGTTGGAGCAGATGAATTT+GGG | 0.318393 | 1.1:-46330594 | MS.gene47334:CDS |
| CAGCCTTTGCATCAAATTGC+AGG | 0.327609 | 1.1:+46329242 | None:intergenic |
| AACCTAATATGGGTCTTATT+AGG | 0.327916 | 1.1:-46331947 | None:intergenic |
| TGAATTTGAGATTGGCACTA+TGG | 0.345316 | 1.1:-46330129 | MS.gene47334:CDS |
| CAAAATAATGTTGATACATC+TGG | 0.351909 | 1.1:-46330547 | MS.gene47334:CDS |
| TCCTTAGCAATTCTCAAATT+CGG | 0.352440 | 1.1:+46330178 | None:intergenic |
| ACAATTAGAAGCTTGAGATT+AGG | 0.353870 | 1.1:+46329858 | None:intergenic |
| GCAGTTGGCATCTCTAAGTT+GGG | 0.357893 | 1.1:-46331155 | MS.gene47334:CDS |
| GCATATGAGCACTAGGATTT+CGG | 0.375827 | 1.1:+46330443 | None:intergenic |
| TTCTTGAAAGCATACCCTTT+GGG | 0.380357 | 1.1:+46331206 | None:intergenic |
| AGTAAAAGCCAATCTGGTTC+TGG | 0.389111 | 1.1:+46330504 | None:intergenic |
| GCAATCACGGTGACAAAGAA+AGG | 0.390420 | 1.1:-46329298 | MS.gene47334:CDS |
| AGGACTTTGATTGCATTCTC+TGG | 0.394570 | 1.1:-46330159 | MS.gene47334:CDS |
| GAAATGGTATAATGAGCATA+TGG | 0.397108 | 1.1:-46330087 | MS.gene47334:CDS |
| TCAAACTCATGGATCCATAA+TGG | 0.397735 | 1.1:+46330278 | None:intergenic |
| TGCAGTTGGCATCTCTAAGT+TGG | 0.406852 | 1.1:-46331156 | MS.gene47334:CDS |
| TTCTAATTCCAGAACCAGAT+TGG | 0.437227 | 1.1:-46330512 | MS.gene47334:CDS |
| TGAATTACCTCGAAAATACT+TGG | 0.438736 | 1.1:+46329453 | None:intergenic |
| TTTCTTGAAAGCATACCCTT+TGG | 0.441062 | 1.1:+46331205 | None:intergenic |
| AATACAACATCATCATCATA+AGG | 0.446092 | 1.1:+46329897 | None:intergenic |
| AAGTGTAGTAAAAGCCAATC+TGG | 0.447185 | 1.1:+46330498 | None:intergenic |
| TTCAAGAAAGCTCCTGGTGG+TGG | 0.463089 | 1.1:-46331191 | MS.gene47334:CDS |
| GCATGATCTGAATTTGAGAT+TGG | 0.470325 | 1.1:-46330137 | MS.gene47334:CDS |
| CAGTTGGCATCTCTAAGTTG+GGG | 0.481139 | 1.1:-46331154 | MS.gene47334:CDS |
| TCAGCCGAGGCTGCTCGAAA+TGG | 0.490523 | 1.1:-46330103 | MS.gene47334:CDS |
| TCTAATTGTTTACGAAGGGT+TGG | 0.492758 | 1.1:-46329844 | MS.gene47334:CDS |
| GTTGAACATGTTGACACAAC+TGG | 0.498785 | 1.1:-46329525 | MS.gene47334:CDS |
| TTTCGAGCAGCCTCGGCTGA+TGG | 0.501826 | 1.1:+46330106 | None:intergenic |
| AGATGAATTTGGGTATATGT+TGG | 0.503210 | 1.1:-46330584 | MS.gene47334:CDS |
| AGCTTCTAATTGTTTACGAA+GGG | 0.513179 | 1.1:-46329848 | MS.gene47334:CDS |
| CAATCACGGTGACAAAGAAA+GGG | 0.514122 | 1.1:-46329297 | MS.gene47334:CDS |
| CTGGTGATGCATTTGTCAGT+GGG | 0.517692 | 1.1:-46329500 | MS.gene47334:CDS |
| TATACCATTTCGAGCAGCCT+CGG | 0.519066 | 1.1:+46330099 | None:intergenic |
| TGGCTCATCAATCAAACTCA+TGG | 0.519652 | 1.1:+46330267 | None:intergenic |
| GGTATAGACCATCCCACTGT+TGG | 0.519702 | 1.1:+46331227 | None:intergenic |
| AAAATTTACCGTTATGACAT+CGG | 0.531312 | 1.1:+46330057 | None:intergenic |
| TGCTGCCTTGAGAATTGCTA+AGG | 0.531913 | 1.1:-46330227 | MS.gene47334:CDS |
| ATGCCAACTGCAACGTTCGC+AGG | 0.533210 | 1.1:+46331167 | None:intergenic |
| AGTTGGCATCTCTAAGTTGG+GGG | 0.533270 | 1.1:-46331153 | MS.gene47334:CDS |
| AATTGTTTACGAAGGGTTGG+AGG | 0.537026 | 1.1:-46329841 | MS.gene47334:CDS |
| AAATGGTATAATGAGCATAT+GGG | 0.538336 | 1.1:-46330086 | MS.gene47334:CDS |
| CGTGATTGCGGCACATACAT+TGG | 0.539771 | 1.1:+46329312 | None:intergenic |
| CATGTTGACACAACTGGTGC+TGG | 0.541956 | 1.1:-46329519 | MS.gene47334:CDS |
| GGCAGCAAGATGAACCGACT+TGG | 0.543015 | 1.1:+46330243 | None:intergenic |
| TTTCTTTGTCACCGTGATTG+CGG | 0.546249 | 1.1:+46329300 | None:intergenic |
| TTAAAGGCACCTTCTTGATG+AGG | 0.548253 | 1.1:+46330392 | None:intergenic |
| TCCGAATTTGAGAATTGCTA+AGG | 0.549887 | 1.1:-46330179 | MS.gene47334:CDS |
| ATGAAGTAAGATCCCACTCA+TGG | 0.550990 | 1.1:-46331759 | MS.gene47334:CDS |
| AAGCTTCTAATTGTTTACGA+AGG | 0.557169 | 1.1:-46329849 | MS.gene47334:CDS |
| CAATGTATGTGCCGCAATCA+CGG | 0.563805 | 1.1:-46329311 | MS.gene47334:CDS |
| TATGCTTTCAAGAAAGCTCC+TGG | 0.570825 | 1.1:-46331197 | MS.gene47334:CDS |
| AATAGATTGCGTGCCAACAG+TGG | 0.573810 | 1.1:-46331240 | MS.gene47334:CDS |
| CTTGAAGGTATTTGTTGACA+AGG | 0.578341 | 1.1:-46331789 | MS.gene47334:intron |
| GCAAGATGAACCGACTTGGA+TGG | 0.585293 | 1.1:+46330247 | None:intergenic |
| ACGTTCGCAGGACCACCACC+AGG | 0.590221 | 1.1:+46331179 | None:intergenic |
| ATAGATTGCGTGCCAACAGT+GGG | 0.595484 | 1.1:-46331239 | MS.gene47334:CDS |
| GCTGGTGATGCATTTGTCAG+TGG | 0.595598 | 1.1:-46329501 | MS.gene47334:CDS |
| GTTGGCATCTCTAAGTTGGG+GGG | 0.597822 | 1.1:-46331152 | MS.gene47334:CDS |
| TGATCATAACCTCATCAAGA+AGG | 0.598780 | 1.1:-46330401 | MS.gene47334:intron |
| GGTCCTGCGAACGTTGCAGT+TGG | 0.599017 | 1.1:-46331170 | MS.gene47334:CDS |
| ATTGTTTACGAAGGGTTGGA+GGG | 0.599566 | 1.1:-46329840 | MS.gene47334:CDS |
| CTGCAACGAAGCAAGTGGAC+TGG | 0.601498 | 1.1:-46331285 | MS.gene47334:CDS |
| GAAGGCTGCAACGAAGCAAG+TGG | 0.603102 | 1.1:-46331290 | MS.gene47334:CDS |
| TGGGATGGTCTATACCCAAA+GGG | 0.603715 | 1.1:-46331220 | MS.gene47334:CDS |
| TCTGATGATCTCATAACAGA+AGG | 0.604237 | 1.1:-46331308 | MS.gene47334:CDS |
| GGCACTATGGCCATCAGCCG+AGG | 0.605030 | 1.1:-46330116 | MS.gene47334:CDS |
| GAATTACCTCGAAAATACTT+GGG | 0.606713 | 1.1:+46329454 | None:intergenic |
| GGATCTAGCCGATGTCATAA+CGG | 0.608610 | 1.1:-46330065 | MS.gene47334:intron |
| TCCAGAAGCATATGAGCACT+AGG | 0.618224 | 1.1:+46330436 | None:intergenic |
| TGTCCTGCAATTTGATGCAA+AGG | 0.620496 | 1.1:-46329245 | MS.gene47334:CDS |
| ATTGCGTGCCAACAGTGGGA+TGG | 0.630906 | 1.1:-46331235 | MS.gene47334:CDS |
| GATTGATGAGCCATCCAAGT+CGG | 0.632413 | 1.1:-46330257 | MS.gene47334:CDS |
| AGAGTCCTTAGCAATTCTCA+AGG | 0.637359 | 1.1:+46330222 | None:intergenic |
| GTGGGATGGTCTATACCCAA+AGG | 0.637363 | 1.1:-46331221 | MS.gene47334:CDS |
| GGGTTGTAGATATTACACTA+AGG | 0.649949 | 1.1:-46329820 | MS.gene47334:intron |
| ATGTTGATACATCTGGCATG+CGG | 0.677431 | 1.1:-46330540 | MS.gene47334:CDS |
| AATCACGGTGACAAAGAAAG+GGG | 0.692600 | 1.1:-46329296 | MS.gene47334:CDS |
| GCTTTCAAGAAAGCTCCTGG+TGG | 0.713242 | 1.1:-46331194 | MS.gene47334:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATAATGAAATG+AGG | + | chr1.1:46331436-46331455 | None:intergenic | 10.0% |
| !! | AAAAAAAAATAATGAAATGA+GGG | + | chr1.1:46331435-46331454 | None:intergenic | 10.0% |
| !!! | ACTTATTTGATTTAATTTTT+TGG | + | chr1.1:46329552-46329571 | None:intergenic | 10.0% |
| !! | AAATTAAATCAAATAAGTTG+AGG | - | chr1.1:46329554-46329573 | MS.gene47334:CDS | 15.0% |
| !! | AATCTTCATATTTAAGAAAT+CGG | - | chr1.1:46330136-46330155 | MS.gene47334:CDS | 15.0% |
| !! | ACTTATTTAATCTAACAATA+AGG | + | chr1.1:46330411-46330430 | None:intergenic | 15.0% |
| !!! | TTTAATTTAATACTGATTAC+AGG | - | chr1.1:46330862-46330881 | MS.gene47334:intron | 15.0% |
| !! | AAATATGAGTTAAATGACTT+TGG | + | chr1.1:46331387-46331406 | None:intergenic | 20.0% |
| !! | AACTTAATAAGAATGATTTG+TGG | - | chr1.1:46329754-46329773 | MS.gene47334:intron | 20.0% |
| !! | AATCTAACTCATTCAATATT+AGG | + | chr1.1:46329466-46329485 | None:intergenic | 20.0% |
| !! | TAAACAAAGATGGAAATTAA+AGG | + | chr1.1:46330800-46330819 | None:intergenic | 20.0% |
| !! | TGTAAAGTTGCAAAATAATT+TGG | - | chr1.1:46329521-46329540 | MS.gene47334:CDS | 20.0% |
| !!! | CATATTTTAATTGTCTGAAT+AGG | - | chr1.1:46331400-46331419 | MS.gene47334:intron | 20.0% |
| !!! | TAAATACATGCATATTTCTA+GGG | + | chr1.1:46330446-46330465 | None:intergenic | 20.0% |
| !!! | TATTTATTGACTTGGTTATT+TGG | - | chr1.1:46330083-46330102 | MS.gene47334:CDS | 20.0% |
| ! | AAAATTTACCGTTATGACAT+CGG | + | chr1.1:46331119-46331138 | None:intergenic | 25.0% |
| ! | AAATAGGAAATACGAGTAAA+TGG | + | chr1.1:46330305-46330324 | None:intergenic | 25.0% |
| ! | AAATGGTATAATGAGCATAT+GGG | - | chr1.1:46331087-46331106 | MS.gene47334:intron | 25.0% |
| ! | AAATGTAACATTGTCATGTT+CGG | - | chr1.1:46330253-46330272 | MS.gene47334:CDS | 25.0% |
| ! | AATACAACATCATCATCATA+AGG | + | chr1.1:46331279-46331298 | None:intergenic | 25.0% |
| ! | AATAGAAGAATCATTTCACA+CGG | + | chr1.1:46329718-46329737 | None:intergenic | 25.0% |
| ! | AGAACTGCAAAGAAAAAAAA+AGG | + | chr1.1:46329800-46329819 | None:intergenic | 25.0% |
| ! | AGATTTGAACAAATCAAACA+TGG | + | chr1.1:46330121-46330140 | None:intergenic | 25.0% |
| ! | ATTATACAGACTTAAACCAT+AGG | + | chr1.1:46330842-46330861 | None:intergenic | 25.0% |
| ! | CAAAATAATGTTGATACATC+TGG | - | chr1.1:46330626-46330645 | MS.gene47334:intron | 25.0% |
| ! | CCAATTAGTATAACTTAACA+AGG | - | chr1.1:46329680-46329699 | MS.gene47334:intron | 25.0% |
| ! | CCTTGTTAAGTTATACTAAT+TGG | + | chr1.1:46329683-46329702 | None:intergenic | 25.0% |
| ! | GAAAAAAAAAAGTGAGTGTT+TGG | - | chr1.1:46331777-46331796 | MS.gene47334:CDS | 25.0% |
| ! | GTAAATACATGCATATTTCT+AGG | + | chr1.1:46330447-46330466 | None:intergenic | 25.0% |
| ! | TTAATCTAACAATAAGGACA+GGG | + | chr1.1:46330405-46330424 | None:intergenic | 25.0% |
| ! | TTTAATCTAACAATAAGGAC+AGG | + | chr1.1:46330406-46330425 | None:intergenic | 25.0% |
| !! | AATTTTTGTGCAGGATTTTA+AGG | - | chr1.1:46331605-46331624 | MS.gene47334:intron | 25.0% |
| !! | ATTTTTGTGCAGGATTTTAA+GGG | - | chr1.1:46331606-46331625 | MS.gene47334:intron | 25.0% |
| !! | CCACATTTTATAAACAAAGA+TGG | + | chr1.1:46330810-46330829 | None:intergenic | 25.0% |
| !! | CCATCTTTGTTTATAAAATG+TGG | - | chr1.1:46330807-46330826 | MS.gene47334:intron | 25.0% |
| !! | GTAGTAGTATTCTGAATTTT+AGG | - | chr1.1:46330498-46330517 | MS.gene47334:CDS | 25.0% |
| !! | TCTACGTATATTTATTGACT+TGG | - | chr1.1:46330075-46330094 | MS.gene47334:CDS | 25.0% |
| !! | TGATTACTAAATTTTTGTGC+AGG | - | chr1.1:46331596-46331615 | MS.gene47334:intron | 25.0% |
| !!! | GTTCGTTCAATTTTTTTAAC+CGG | + | chr1.1:46329824-46329843 | None:intergenic | 25.0% |
| AAGCTTCTAATTGTTTACGA+AGG | - | chr1.1:46331324-46331343 | MS.gene47334:intron | 30.0% | |
| ACAATTAGAAGCTTGAGATT+AGG | + | chr1.1:46331318-46331337 | None:intergenic | 30.0% | |
| AGATGAATTTGGGTATATGT+TGG | - | chr1.1:46330589-46330608 | MS.gene47334:CDS | 30.0% | |
| AGCTTCTAATTGTTTACGAA+GGG | - | chr1.1:46331325-46331344 | MS.gene47334:intron | 30.0% | |
| ATAGAAGAATCATTTCACAC+GGG | + | chr1.1:46329717-46329736 | None:intergenic | 30.0% | |
| ATTCGATGGGAATGAAAAAT+AGG | + | chr1.1:46330321-46330340 | None:intergenic | 30.0% | |
| CAATTAGAAGCTTGAGATTA+GGG | + | chr1.1:46331317-46331336 | None:intergenic | 30.0% | |
| CAGGCTAAAATATTCCATTA+TGG | - | chr1.1:46330881-46330900 | MS.gene47334:intron | 30.0% | |
| GAAAAAAGAATGAAGTGCAA+TGG | + | chr1.1:46331171-46331190 | None:intergenic | 30.0% | |
| GAAATGGTATAATGAGCATA+TGG | - | chr1.1:46331086-46331105 | MS.gene47334:intron | 30.0% | |
| GAATGTATTTGTGTGTTTCA+AGG | - | chr1.1:46330197-46330216 | MS.gene47334:CDS | 30.0% | |
| GAATTACCTCGAAAATACTT+GGG | + | chr1.1:46331722-46331741 | None:intergenic | 30.0% | |
| GATAAATTGAACACAAGAAC+TGG | - | chr1.1:46329645-46329664 | MS.gene47334:intron | 30.0% | |
| TCCTTAGCAATTCTCAAATT+CGG | + | chr1.1:46330998-46331017 | None:intergenic | 30.0% | |
| TGAATTACCTCGAAAATACT+TGG | + | chr1.1:46331723-46331742 | None:intergenic | 30.0% | |
| TGGAAATGTGAAGTTATAGT+TGG | + | chr1.1:46330365-46330384 | None:intergenic | 30.0% | |
| ! | TGGCGAAATATAATGCATTT+TGG | + | chr1.1:46331844-46331863 | None:intergenic | 30.0% |
| !!! | TTTTTTCTTTGCAGTTCTAC+CGG | - | chr1.1:46329802-46329821 | MS.gene47334:intron | 30.0% |
| AAGTGTAGTAAAAGCCAATC+TGG | + | chr1.1:46330678-46330697 | None:intergenic | 35.0% | |
| AATGGTATTCCTCAAAATGC+AGG | + | chr1.1:46330287-46330306 | None:intergenic | 35.0% | |
| ACAATAAGGACAGGGAAAAA+AGG | + | chr1.1:46330397-46330416 | None:intergenic | 35.0% | |
| ACAGGGAAAAAAGGTAAATG+GGG | + | chr1.1:46330388-46330407 | None:intergenic | 35.0% | |
| ACTTAAACCATAGGTCTTTG+TGG | + | chr1.1:46330833-46330852 | None:intergenic | 35.0% | |
| AGAAGTGGTTTCTATTCGAT+GGG | + | chr1.1:46330334-46330353 | None:intergenic | 35.0% | |
| ATATCAGTCAGTCATGGTTA+CGG | - | chr1.1:46329260-46329279 | MS.gene47334:CDS | 35.0% | |
| ATGTGAAGTTATAGTTGGTC+AGG | + | chr1.1:46330360-46330379 | None:intergenic | 35.0% | |
| ATTTCTGAGTAGCATCATTG+TGG | + | chr1.1:46329313-46329332 | None:intergenic | 35.0% | |
| CAAGTTGTAAAACTTGAGCA+AGG | - | chr1.1:46331541-46331560 | MS.gene47334:intron | 35.0% | |
| CATCTGTGCATTTATAAGCA+AGG | - | chr1.1:46330046-46330065 | MS.gene47334:intron | 35.0% | |
| CATGTTATATCAGTCAGTCA+TGG | - | chr1.1:46329254-46329273 | MS.gene47334:CDS | 35.0% | |
| GACAGGGAAAAAAGGTAAAT+GGG | + | chr1.1:46330389-46330408 | None:intergenic | 35.0% | |
| GGGTTGTAGATATTACACTA+AGG | - | chr1.1:46331353-46331372 | MS.gene47334:intron | 35.0% | |
| TAGAAGTGGTTTCTATTCGA+TGG | + | chr1.1:46330335-46330354 | None:intergenic | 35.0% | |
| TCAAACTCATGGATCCATAA+TGG | + | chr1.1:46330898-46330917 | None:intergenic | 35.0% | |
| TCCGAATTTGAGAATTGCTA+AGG | - | chr1.1:46330994-46331013 | MS.gene47334:intron | 35.0% | |
| TCTAATTGTTTACGAAGGGT+TGG | - | chr1.1:46331329-46331348 | MS.gene47334:intron | 35.0% | |
| TCTGATGATCTCATAACAGA+AGG | - | chr1.1:46329865-46329884 | MS.gene47334:CDS | 35.0% | |
| TGATCATAACCTCATCAAGA+AGG | - | chr1.1:46330772-46330791 | MS.gene47334:intron | 35.0% | |
| TTAAGAAATCGGCAATGTGT+TGG | - | chr1.1:46330147-46330166 | MS.gene47334:CDS | 35.0% | |
| TTAGGAATGCGAATCTATGT+TGG | - | chr1.1:46330516-46330535 | MS.gene47334:CDS | 35.0% | |
| TTCTAATTCCAGAACCAGAT+TGG | - | chr1.1:46330661-46330680 | MS.gene47334:intron | 35.0% | |
| TTGTAAAACTTGAGCAAGGT+TGG | - | chr1.1:46331545-46331564 | MS.gene47334:intron | 35.0% | |
| ! | ACATCTTTTGTAGGTAATGC+AGG | + | chr1.1:46331908-46331927 | None:intergenic | 35.0% |
| ! | GATGAGATTACTCTTTTGAC+TGG | - | chr1.1:46331243-46331262 | MS.gene47334:CDS | 35.0% |
| ! | GCATGATCTGAATTTGAGAT+TGG | - | chr1.1:46331036-46331055 | MS.gene47334:intron | 35.0% |
| ! | GTTAAAGTTCCTGCATTTTG+AGG | - | chr1.1:46330275-46330294 | MS.gene47334:CDS | 35.0% |
| ! | TGAATTTGAGATTGGCACTA+TGG | - | chr1.1:46331044-46331063 | MS.gene47334:intron | 35.0% |
| ! | TTCTTGAAAGCATACCCTTT+GGG | + | chr1.1:46329970-46329989 | None:intergenic | 35.0% |
| ! | TTTCTTGAAAGCATACCCTT+TGG | + | chr1.1:46329971-46329990 | None:intergenic | 35.0% |
| !! | ACTTTTTCTTGTCCATGAGT+GGG | + | chr1.1:46329429-46329448 | None:intergenic | 35.0% |
| !! | CTTGAAGGTATTTGTTGACA+AGG | - | chr1.1:46329384-46329403 | MS.gene47334:intron | 35.0% |
| !! | GATTTTAAGGGCAAAGTTAG+AGG | - | chr1.1:46331618-46331637 | MS.gene47334:intron | 35.0% |
| !! | GTTGACGAAGTTATTTTGTG+TGG | - | chr1.1:46331801-46331820 | MS.gene47334:intron | 35.0% |
| !! | TGATGAGTGGACTGAAATAT+TGG | - | chr1.1:46331467-46331486 | MS.gene47334:intron | 35.0% |
| !! | TTTTTGTGCTAAATCGACTC+TGG | - | chr1.1:46329356-46329375 | MS.gene47334:intron | 35.0% |
| !!! | ACGAACAATTCTTGTTTTGC+AGG | - | chr1.1:46329838-46329857 | MS.gene47334:CDS | 35.0% |
| !!! | TACTTTTTCTTGTCCATGAG+TGG | + | chr1.1:46329430-46329449 | None:intergenic | 35.0% |
| AACCTAAAACACAGATGGTG+AGG | + | chr1.1:46330564-46330583 | None:intergenic | 40.0% | |
| AATCACGGTGACAAAGAAAG+GGG | - | chr1.1:46331877-46331896 | MS.gene47334:intron | 40.0% | |
| AATTGTTTACGAAGGGTTGG+AGG | - | chr1.1:46331332-46331351 | MS.gene47334:intron | 40.0% | |
| AGAGTCCTTAGCAATTCTCA+AGG | + | chr1.1:46330954-46330973 | None:intergenic | 40.0% | |
| AGGACTTTGATTGCATTCTC+TGG | - | chr1.1:46331014-46331033 | MS.gene47334:intron | 40.0% | |
| AGGTTGGAGCAGATGAATTT+GGG | - | chr1.1:46330579-46330598 | MS.gene47334:CDS | 40.0% | |
| ATCATTGTGGCAGACGAAAA+AGG | + | chr1.1:46329300-46329319 | None:intergenic | 40.0% | |
| ATGAAGTAAGATCCCACTCA+TGG | - | chr1.1:46329414-46329433 | MS.gene47334:intron | 40.0% | |
| ATGTTGATACATCTGGCATG+CGG | - | chr1.1:46330633-46330652 | MS.gene47334:intron | 40.0% | |
| ATTGTTTACGAAGGGTTGGA+GGG | - | chr1.1:46331333-46331352 | MS.gene47334:intron | 40.0% | |
| ATTTCCAAGCTCACGTTTCA+GGG | + | chr1.1:46330237-46330256 | None:intergenic | 40.0% | |
| CAATCACGGTGACAAAGAAA+GGG | - | chr1.1:46331876-46331895 | MS.gene47334:intron | 40.0% | |
| GCATATGAGCACTAGGATTT+CGG | + | chr1.1:46330733-46330752 | None:intergenic | 40.0% | |
| GGACAGGGAAAAAAGGTAAA+TGG | + | chr1.1:46330390-46330409 | None:intergenic | 40.0% | |
| GTTGAACATGTTGACACAAC+TGG | - | chr1.1:46331648-46331667 | MS.gene47334:intron | 40.0% | |
| TAGTTGGTCAGGTTTAGAAG+TGG | + | chr1.1:46330349-46330368 | None:intergenic | 40.0% | |
| TATGCTTTCAAGAAAGCTCC+TGG | - | chr1.1:46329976-46329995 | MS.gene47334:intron | 40.0% | |
| TGGCTCATCAATCAAACTCA+TGG | + | chr1.1:46330909-46330928 | None:intergenic | 40.0% | |
| TGTCCTGCAATTTGATGCAA+AGG | - | chr1.1:46331928-46331947 | MS.gene47334:intron | 40.0% | |
| TTGCTCTTTACTCTGATGAG+TGG | - | chr1.1:46331454-46331473 | MS.gene47334:intron | 40.0% | |
| TTTCTTTGTCACCGTGATTG+CGG | + | chr1.1:46331876-46331895 | None:intergenic | 40.0% | |
| ! | AGTAAAAGCCAATCTGGTTC+TGG | + | chr1.1:46330672-46330691 | None:intergenic | 40.0% |
| ! | TAGGTTGGAGCAGATGAATT+TGG | - | chr1.1:46330578-46330597 | MS.gene47334:CDS | 40.0% |
| ! | TGCAGGACAACATCTTTTGT+AGG | + | chr1.1:46331917-46331936 | None:intergenic | 40.0% |
| ! | TTCTGACCCAAGTATTTTCG+AGG | - | chr1.1:46331713-46331732 | MS.gene47334:intron | 40.0% |
| !! | ACGAAGTTATTTTGTGTGGC+AGG | - | chr1.1:46331805-46331824 | MS.gene47334:intron | 40.0% |
| !! | ATTACTCTTTTGACTGGTGG+TGG | - | chr1.1:46331249-46331268 | MS.gene47334:CDS | 40.0% |
| !! | GAGATTACTCTTTTGACTGG+TGG | - | chr1.1:46331246-46331265 | MS.gene47334:CDS | 40.0% |
| !! | TCACCATCTGTGTTTTAGGT+TGG | - | chr1.1:46330563-46330582 | MS.gene47334:CDS | 40.0% |
| !! | TTAAAGGCACCTTCTTGATG+AGG | + | chr1.1:46330784-46330803 | None:intergenic | 40.0% |
| !!! | AGTGGACTGGTTGTTTGTTT+TGG | - | chr1.1:46329901-46329920 | MS.gene47334:CDS | 40.0% |
| AATAGATTGCGTGCCAACAG+TGG | - | chr1.1:46329933-46329952 | MS.gene47334:CDS | 45.0% | |
| AATGTGGCCACAAAGACCTA+TGG | - | chr1.1:46330823-46330842 | MS.gene47334:intron | 45.0% | |
| ATAGATTGCGTGCCAACAGT+GGG | - | chr1.1:46329934-46329953 | MS.gene47334:CDS | 45.0% | |
| CAATGTATGTGCCGCAATCA+CGG | - | chr1.1:46331862-46331881 | MS.gene47334:intron | 45.0% | |
| CAGCCTTTGCATCAAATTGC+AGG | + | chr1.1:46331934-46331953 | None:intergenic | 45.0% | |
| CAGTTGGCATCTCTAAGTTG+GGG | - | chr1.1:46330019-46330038 | MS.gene47334:intron | 45.0% | |
| CATTTCCAAGCTCACGTTTC+AGG | + | chr1.1:46330238-46330257 | None:intergenic | 45.0% | |
| GATTGATGAGCCATCCAAGT+CGG | - | chr1.1:46330916-46330935 | MS.gene47334:intron | 45.0% | |
| GCAATCACGGTGACAAAGAA+AGG | - | chr1.1:46331875-46331894 | MS.gene47334:intron | 45.0% | |
| GCAGTTGGCATCTCTAAGTT+GGG | - | chr1.1:46330018-46330037 | MS.gene47334:intron | 45.0% | |
| GCTCCAACCTAAAACACAGA+TGG | + | chr1.1:46330569-46330588 | None:intergenic | 45.0% | |
| GGATCTAGCCGATGTCATAA+CGG | - | chr1.1:46331108-46331127 | MS.gene47334:intron | 45.0% | |
| GGGAAAAAAGGTAAATGGGG+TGG | + | chr1.1:46330385-46330404 | None:intergenic | 45.0% | |
| TATACCATTTCGAGCAGCCT+CGG | + | chr1.1:46331077-46331096 | None:intergenic | 45.0% | |
| TCCTAGTGCTCATATGCTTC+TGG | - | chr1.1:46330736-46330755 | MS.gene47334:intron | 45.0% | |
| TGCAGTTGGCATCTCTAAGT+TGG | - | chr1.1:46330017-46330036 | MS.gene47334:intron | 45.0% | |
| TGCTGCCTTGAGAATTGCTA+AGG | - | chr1.1:46330946-46330965 | MS.gene47334:intron | 45.0% | |
| TGGGATGGTCTATACCCAAA+GGG | - | chr1.1:46329953-46329972 | MS.gene47334:intron | 45.0% | |
| ! | AGTTGGCATCTCTAAGTTGG+GGG | - | chr1.1:46330020-46330039 | MS.gene47334:intron | 45.0% |
| ! | CTCCTCACCATCTGTGTTTT+AGG | - | chr1.1:46330559-46330578 | MS.gene47334:CDS | 45.0% |
| ! | CTGGTGATGCATTTGTCAGT+GGG | - | chr1.1:46331673-46331692 | MS.gene47334:intron | 45.0% |
| ! | TCCAGAAGCATATGAGCACT+AGG | + | chr1.1:46330740-46330759 | None:intergenic | 45.0% |
| AACTCCCTGAAACGTGAGCT+TGG | - | chr1.1:46330230-46330249 | MS.gene47334:CDS | 50.0% | |
| CATGTTGACACAACTGGTGC+TGG | - | chr1.1:46331654-46331673 | MS.gene47334:intron | 50.0% | |
| CGTGATTGCGGCACATACAT+TGG | + | chr1.1:46331864-46331883 | None:intergenic | 50.0% | |
| GCTTTCAAGAAAGCTCCTGG+TGG | - | chr1.1:46329979-46329998 | MS.gene47334:intron | 50.0% | |
| GGTATAGACCATCCCACTGT+TGG | + | chr1.1:46329949-46329968 | None:intergenic | 50.0% | |
| GTGGGATGGTCTATACCCAA+AGG | - | chr1.1:46329952-46329971 | MS.gene47334:intron | 50.0% | |
| TCGACTCTGGCTATGCTTGA+AGG | - | chr1.1:46329369-46329388 | MS.gene47334:intron | 50.0% | |
| TTCAAGAAAGCTCCTGGTGG+TGG | - | chr1.1:46329982-46330001 | MS.gene47334:intron | 50.0% | |
| ! | GCTGGTGATGCATTTGTCAG+TGG | - | chr1.1:46331672-46331691 | MS.gene47334:intron | 50.0% |
| ! | GTTGGCATCTCTAAGTTGGG+GGG | - | chr1.1:46330021-46330040 | MS.gene47334:intron | 50.0% |
| !! | CTTGAGCAAGGTTGGCTTCA+AGG | - | chr1.1:46331553-46331572 | MS.gene47334:intron | 50.0% |
| !! | GCAAGATGAACCGACTTGGA+TGG | + | chr1.1:46330929-46330948 | None:intergenic | 50.0% |
| ATGCCAACTGCAACGTTCGC+AGG | + | chr1.1:46330009-46330028 | None:intergenic | 55.0% | |
| ATTGCGTGCCAACAGTGGGA+TGG | - | chr1.1:46329938-46329957 | MS.gene47334:CDS | 55.0% | |
| CTGCAACGAAGCAAGTGGAC+TGG | - | chr1.1:46329888-46329907 | MS.gene47334:CDS | 55.0% | |
| GAAGGCTGCAACGAAGCAAG+TGG | - | chr1.1:46329883-46329902 | MS.gene47334:CDS | 55.0% | |
| GGCAGCAAGATGAACCGACT+TGG | + | chr1.1:46330933-46330952 | None:intergenic | 55.0% | |
| GGTCCTGCGAACGTTGCAGT+TGG | - | chr1.1:46330003-46330022 | MS.gene47334:intron | 60.0% | |
| TCAGCCGAGGCTGCTCGAAA+TGG | - | chr1.1:46331070-46331089 | MS.gene47334:intron | 60.0% | |
| TTTCGAGCAGCCTCGGCTGA+TGG | + | chr1.1:46331070-46331089 | None:intergenic | 60.0% | |
| ACGTTCGCAGGACCACCACC+AGG | + | chr1.1:46329997-46330016 | None:intergenic | 65.0% | |
| GGCACTATGGCCATCAGCCG+AGG | - | chr1.1:46331057-46331076 | MS.gene47334:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 46329234 | 46331961 | 46329234 | ID=MS.gene47334 |
| chr1.1 | mRNA | 46329234 | 46331961 | 46329234 | ID=MS.gene47334.t1;Parent=MS.gene47334 |
| chr1.1 | exon | 46331948 | 46331961 | 46331948 | ID=MS.gene47334.t1.exon1;Parent=MS.gene47334.t1 |
| chr1.1 | CDS | 46331948 | 46331961 | 46331948 | ID=cds.MS.gene47334.t1;Parent=MS.gene47334.t1 |
| chr1.1 | exon | 46331749 | 46331804 | 46331749 | ID=MS.gene47334.t1.exon2;Parent=MS.gene47334.t1 |
| chr1.1 | CDS | 46331749 | 46331804 | 46331749 | ID=cds.MS.gene47334.t1;Parent=MS.gene47334.t1 |
| chr1.1 | exon | 46331145 | 46331335 | 46331145 | ID=MS.gene47334.t1.exon3;Parent=MS.gene47334.t1 |
| chr1.1 | CDS | 46331145 | 46331335 | 46331145 | ID=cds.MS.gene47334.t1;Parent=MS.gene47334.t1 |
| chr1.1 | exon | 46330402 | 46330614 | 46330402 | ID=MS.gene47334.t1.exon4;Parent=MS.gene47334.t1 |
| chr1.1 | CDS | 46330402 | 46330614 | 46330402 | ID=cds.MS.gene47334.t1;Parent=MS.gene47334.t1 |
| chr1.1 | exon | 46330066 | 46330311 | 46330066 | ID=MS.gene47334.t1.exon5;Parent=MS.gene47334.t1 |
| chr1.1 | CDS | 46330066 | 46330311 | 46330066 | ID=cds.MS.gene47334.t1;Parent=MS.gene47334.t1 |
| chr1.1 | exon | 46329821 | 46329961 | 46329821 | ID=MS.gene47334.t1.exon6;Parent=MS.gene47334.t1 |
| chr1.1 | CDS | 46329821 | 46329961 | 46329821 | ID=cds.MS.gene47334.t1;Parent=MS.gene47334.t1 |
| chr1.1 | exon | 46329461 | 46329577 | 46329461 | ID=MS.gene47334.t1.exon7;Parent=MS.gene47334.t1 |
| chr1.1 | CDS | 46329461 | 46329577 | 46329461 | ID=cds.MS.gene47334.t1;Parent=MS.gene47334.t1 |
| chr1.1 | exon | 46329234 | 46329368 | 46329234 | ID=MS.gene47334.t1.exon8;Parent=MS.gene47334.t1 |
| chr1.1 | CDS | 46329234 | 46329368 | 46329234 | ID=cds.MS.gene47334.t1;Parent=MS.gene47334.t1 |
| Gene Sequence |
| Protein sequence |
