Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47399.t1 | XP_003590443.2 | 86.7 | 1340 | 122 | 4 | 1 | 1339 | 1 | 1285 | 0.00E+00 | 1781.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47399.t1 | G7IA77 | 86.7 | 1340 | 122 | 4 | 1 | 1339 | 1 | 1285 | 0.0e+00 | 1781.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene47399 | 0.818418 | 1.98E-52 | -1.69E-46 |
| MS.gene049159 | MS.gene47399 | 0.802128 | 6.50E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene47399 | 0.813576 | 2.39E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene47399 | 0.818257 | 2.15E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene47399 | 0.813197 | 2.89E-51 | -1.69E-46 |
| MS.gene051388 | MS.gene47399 | 0.942591 | 5.48E-102 | -1.69E-46 |
| MS.gene051719 | MS.gene47399 | 0.808914 | 2.45E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene47399 | 0.806639 | 7.46E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene47399 | 0.804696 | 1.91E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene47399 | 0.804073 | 2.57E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene47399 | 0.827505 | 1.51E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene47399 | 0.827721 | 1.34E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene47399 | 0.832165 | 1.10E-55 | -1.69E-46 |
| MS.gene055466 | MS.gene47399 | 0.853901 | 1.76E-61 | -1.69E-46 |
| MS.gene055468 | MS.gene47399 | 0.831821 | 1.34E-55 | -1.69E-46 |
| MS.gene055469 | MS.gene47399 | 0.81085 | 9.39E-51 | -1.69E-46 |
| MS.gene055580 | MS.gene47399 | -0.821346 | 4.24E-53 | -1.69E-46 |
| MS.gene056043 | MS.gene47399 | -0.801465 | 8.89E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene47399 | 0.802682 | 5.00E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene47399 | 0.80433 | 2.27E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene47399 | 0.816001 | 6.92E-52 | -1.69E-46 |
| MS.gene059937 | MS.gene47399 | 0.815599 | 8.51E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene47399 | 0.806798 | 6.91E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47399.t1 | MTR_1g062200 | 92.090 | 1340 | 50 | 4 | 1 | 1339 | 1 | 1285 | 0.0 | 2400 |
| MS.gene47399.t1 | MTR_1g062200 | 92.082 | 1263 | 44 | 4 | 1 | 1262 | 1 | 1208 | 0.0 | 2253 |
| MS.gene47399.t1 | MTR_1g090807 | 30.831 | 1252 | 699 | 29 | 6 | 1153 | 30 | 1218 | 4.48e-131 | 436 |
| MS.gene47399.t1 | MTR_6g014000 | 86.325 | 117 | 16 | 0 | 960 | 1076 | 349 | 465 | 3.60e-57 | 206 |
| MS.gene47399.t1 | MTR_1g100633 | 29.194 | 459 | 262 | 17 | 1 | 443 | 1 | 412 | 6.02e-27 | 119 |
| MS.gene47399.t1 | MTR_1g100633 | 29.194 | 459 | 262 | 17 | 1 | 443 | 1 | 412 | 6.09e-27 | 119 |
| MS.gene47399.t1 | MTR_1g100633 | 29.194 | 459 | 262 | 17 | 1 | 443 | 1 | 412 | 8.90e-27 | 119 |
| MS.gene47399.t1 | MTR_3g073620 | 35.099 | 151 | 96 | 2 | 1 | 150 | 1 | 150 | 1.61e-26 | 119 |
| MS.gene47399.t1 | MTR_5g010520 | 26.364 | 550 | 331 | 14 | 1 | 516 | 1 | 510 | 5.36e-26 | 116 |
| MS.gene47399.t1 | MTR_5g010520 | 26.364 | 550 | 331 | 14 | 1 | 516 | 1 | 510 | 7.04e-26 | 116 |
| MS.gene47399.t1 | MTR_5g010520 | 25.415 | 602 | 339 | 20 | 782 | 1333 | 517 | 1058 | 7.68e-13 | 73.9 |
| MS.gene47399.t1 | MTR_8g097350 | 25.417 | 480 | 288 | 14 | 1 | 442 | 1 | 448 | 1.78e-24 | 111 |
| MS.gene47399.t1 | MTR_8g097350 | 25.826 | 484 | 278 | 15 | 1 | 442 | 1 | 445 | 3.99e-24 | 110 |
| MS.gene47399.t1 | MTR_8g010370 | 49.462 | 93 | 36 | 5 | 100 | 187 | 134 | 220 | 2.40e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47399.t1 | AT1G22060 | 39.216 | 153 | 87 | 4 | 1 | 150 | 1 | 150 | 2.28e-28 | 125 |
| MS.gene47399.t1 | AT1G22060 | 39.216 | 153 | 87 | 4 | 1 | 150 | 1 | 150 | 2.28e-28 | 125 |
| MS.gene47399.t1 | AT5G52280 | 27.572 | 486 | 290 | 16 | 1 | 473 | 1 | 437 | 2.02e-23 | 108 |
| MS.gene47399.t1 | AT5G41140 | 24.945 | 453 | 279 | 15 | 1 | 428 | 1 | 417 | 1.07e-18 | 93.2 |
| MS.gene47399.t1 | AT5G41140 | 24.835 | 455 | 277 | 16 | 1 | 428 | 1 | 417 | 1.55e-18 | 92.4 |
Find 198 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTGAACCTTCAAATTTC+TGG | 0.069264 | 1.4:-51255029 | None:intergenic |
| CACCGGTGTCTTGCATATTT+TGG | 0.070954 | 1.4:-51252756 | None:intergenic |
| GATTCTCTATTTCTAGTTTA+AGG | 0.082921 | 1.4:-51254634 | None:intergenic |
| AAGGGTCCTGTTGATCTTTC+AGG | 0.132731 | 1.4:-51255608 | None:intergenic |
| CAAGCTCAACATTTGCTTCT+TGG | 0.157455 | 1.4:-51253173 | None:intergenic |
| ATTCCACCTCTGCATATTTA+AGG | 0.182023 | 1.4:-51257102 | None:intergenic |
| TTCAGAGATGGATGGTATTT+TGG | 0.182337 | 1.4:+51254532 | MS.gene47399:CDS |
| TGCTGATTTCAAATTTAAAA+TGG | 0.188126 | 1.4:+51254862 | MS.gene47399:CDS |
| TCAATTTGAAAATGAGATTA+TGG | 0.213947 | 1.4:+51255063 | MS.gene47399:CDS |
| GCCAAATTGGAATCGGCTTT+TGG | 0.222360 | 1.4:+51254746 | MS.gene47399:CDS |
| CACAGTCTCTCCTCCATTGC+AGG | 0.229035 | 1.4:-51253553 | None:intergenic |
| TCCAAAAGCCGATTCCAATT+TGG | 0.234836 | 1.4:-51254747 | None:intergenic |
| ACCATCATTACTAATCTTCT+TGG | 0.240885 | 1.4:-51253853 | None:intergenic |
| CTCAAGTTTCTGCTGTTCTA+TGG | 0.245534 | 1.4:-51253223 | None:intergenic |
| ATCTTCCTCTGTTGGTGATA+TGG | 0.252738 | 1.4:+51252116 | MS.gene47399:CDS |
| TATATTTGACAAAAGATCTT+TGG | 0.263920 | 1.4:-51253736 | None:intergenic |
| TGAGAAGAGTTATTATTAAC+AGG | 0.269806 | 1.4:-51252709 | None:intergenic |
| GGATTCTTCCATAGAAGATT+TGG | 0.273767 | 1.4:+51254202 | MS.gene47399:CDS |
| TGATGTTTCCTGCTGTTATA+AGG | 0.275186 | 1.4:-51255627 | None:intergenic |
| TGTAGGTGATGCAGATCTTT+TGG | 0.275812 | 1.4:+51253584 | MS.gene47399:CDS |
| AGAGCAGTATTGCTCCCTTA+TGG | 0.279772 | 1.4:+51254391 | MS.gene47399:CDS |
| GGAAGAGTTGAGAGATATTC+AGG | 0.281278 | 1.4:+51257060 | MS.gene47399:CDS |
| AGAAGAATTGAAACTGATTA+AGG | 0.287044 | 1.4:+51255366 | MS.gene47399:CDS |
| CTTTAGTTGCAAAGACAAAT+TGG | 0.293118 | 1.4:-51253145 | None:intergenic |
| GATTCATTTGAGAAGCTAAA+TGG | 0.300157 | 1.4:+51254341 | MS.gene47399:CDS |
| ACCATAGTCTCAACTTCTTC+AGG | 0.302249 | 1.4:-51252153 | None:intergenic |
| TGTTTCCTTCTTCACTTGTC+TGG | 0.311103 | 1.4:-51253299 | None:intergenic |
| GGCCATTTGCATGGTTGTTT+CGG | 0.319561 | 1.4:-51256967 | None:intergenic |
| GCCTTCTGATCATCATTAAC+AGG | 0.320976 | 1.4:-51255427 | None:intergenic |
| TTCTCATCTCAAAGCACTTC+AGG | 0.324938 | 1.4:+51249716 | MS.gene47399:CDS |
| CAGTCTCTCTTTCTCAGTAT+TGG | 0.325818 | 1.4:-51255110 | None:intergenic |
| TATATGAAGTTCAACTTAAC+AGG | 0.330514 | 1.4:+51255933 | MS.gene47399:CDS |
| AATCAGCAAGCTCAGTTGTT+AGG | 0.331769 | 1.4:-51254847 | None:intergenic |
| CTATGGTTTCTTCCAGCTCC+TGG | 0.336965 | 1.4:-51253206 | None:intergenic |
| TTGCAGGCAGAAAGTCTTCC+TGG | 0.343418 | 1.4:+51252544 | MS.gene47399:intron |
| AGCAATTGAGTCTTTGATAC+TGG | 0.343908 | 1.4:-51255872 | None:intergenic |
| ACGTGCTGATAAAGCCAAAT+TGG | 0.355795 | 1.4:+51254733 | MS.gene47399:CDS |
| GAGCAGTATTGCTCCCTTAT+GGG | 0.358294 | 1.4:+51254392 | MS.gene47399:CDS |
| CCTATTGCTGCGAACTTGAT+TGG | 0.365126 | 1.4:-51255553 | None:intergenic |
| TCTGTTGTCTCTGTAGAAAA+TGG | 0.366879 | 1.4:+51251260 | MS.gene47399:CDS |
| CAAGTAAAGAAAAGGAGATT+GGG | 0.387398 | 1.4:+51253994 | MS.gene47399:CDS |
| TCAGTTTCAATTCTTCTTCA+AGG | 0.388382 | 1.4:-51255360 | None:intergenic |
| TCAAGTAAAGAAAAGGAGAT+TGG | 0.396372 | 1.4:+51253993 | MS.gene47399:CDS |
| GATGTTTCCTGCTGTTATAA+GGG | 0.399357 | 1.4:-51255626 | None:intergenic |
| ACCTGAAGAAGTTGAGACTA+TGG | 0.400749 | 1.4:+51252152 | MS.gene47399:CDS |
| CCAATCAAGTTCGCAGCAAT+AGG | 0.402605 | 1.4:+51255553 | MS.gene47399:CDS |
| GGAGAAGGCTGCATCAGAAT+TGG | 0.404436 | 1.4:+51255216 | MS.gene47399:CDS |
| CCCTCAACCTGGCTCCCATA+AGG | 0.411917 | 1.4:-51254406 | None:intergenic |
| AAGGCAGAGAATACATCATT+TGG | 0.414158 | 1.4:+51255175 | MS.gene47399:CDS |
| TAAAGGAAACACAATTTCAT+TGG | 0.415707 | 1.4:+51254234 | MS.gene47399:CDS |
| CCGCTAAATAAGTGCAATCA+TGG | 0.416997 | 1.4:+51251598 | MS.gene47399:CDS |
| GCTGGCTATGGTGCAAGAAC+TGG | 0.422369 | 1.4:+51253371 | MS.gene47399:CDS |
| AGTATTGAATAAGAAAGTTC+AGG | 0.424150 | 1.4:+51253617 | MS.gene47399:CDS |
| ATCAAGTTTCAAAGCTAAAC+AGG | 0.424335 | 1.4:+51255401 | MS.gene47399:CDS |
| TCTCTGTCATTCTTTAAAGA+TGG | 0.425434 | 1.4:-51255582 | None:intergenic |
| GGAAACAAATTCTCATTTGA+AGG | 0.425661 | 1.4:+51252014 | MS.gene47399:CDS |
| TATTAACAGGGTAGTCGTAA+TGG | 0.426861 | 1.4:-51252696 | None:intergenic |
| CCCTTATGGGAGCCAGGTTG+AGG | 0.427765 | 1.4:+51254405 | MS.gene47399:CDS |
| AGCAAAGTCACGGTGCGAAA+TGG | 0.428476 | 1.4:+51251302 | MS.gene47399:CDS |
| AACAGTTTGTCCCACCCCTT+TGG | 0.428541 | 1.4:-51251233 | None:intergenic |
| CTCAACTTCTTCAGGTGATA+AGG | 0.429179 | 1.4:-51252145 | None:intergenic |
| ATCATTAAGATCTGGAATCC+TGG | 0.429489 | 1.4:+51251513 | MS.gene47399:CDS |
| CATGATTGCACTTATTTAGC+GGG | 0.430592 | 1.4:-51251597 | None:intergenic |
| TCCCTTTCCTGTGGAATCCT+CGG | 0.433917 | 1.4:-51252596 | None:intergenic |
| TGAGCTTGTTTCTGTTCTCC+AGG | 0.434229 | 1.4:+51253188 | MS.gene47399:CDS |
| TGTTTCTGTTCTCCAGGAGC+TGG | 0.440644 | 1.4:+51253194 | MS.gene47399:CDS |
| GCATCTCCGCAATCTTCTCT+TGG | 0.441780 | 1.4:-51254169 | None:intergenic |
| ACTGCATAAGCCTTTCTTCA+AGG | 0.444906 | 1.4:-51255264 | None:intergenic |
| ATTAACAGGGTAGTCGTAAT+GGG | 0.448727 | 1.4:-51252695 | None:intergenic |
| GCCAAGAAGATTAGTAATGA+TGG | 0.453336 | 1.4:+51253852 | MS.gene47399:CDS |
| TTGCAAAGACAAATTGGCAT+TGG | 0.454395 | 1.4:-51253139 | None:intergenic |
| AGAAATCCTGAAAGATCAAC+AGG | 0.457985 | 1.4:+51255602 | MS.gene47399:CDS |
| AAACAAATTATCTGCTAAAG+AGG | 0.458484 | 1.4:+51253482 | MS.gene47399:CDS |
| CCTCAACCTGGCTCCCATAA+GGG | 0.460421 | 1.4:-51254405 | None:intergenic |
| AAAGAAGTTTGCTTTGATGC+TGG | 0.460831 | 1.4:+51254478 | MS.gene47399:CDS |
| CTTATTGAATCAGATGCAAA+TGG | 0.463804 | 1.4:+51254589 | MS.gene47399:CDS |
| GCCGAGGATTCCACAGGAAA+GGG | 0.466600 | 1.4:+51252595 | MS.gene47399:CDS |
| TTCAGCAGCCTATGATGAAA+AGG | 0.467557 | 1.4:+51254670 | MS.gene47399:CDS |
| TTCACTTGATTCCCTCAACC+TGG | 0.468793 | 1.4:-51254417 | None:intergenic |
| GAAGTGACTGTCAAGTCAAA+TGG | 0.470428 | 1.4:+51252063 | MS.gene47399:CDS |
| TTGAACTTCATATATGTCAA+TGG | 0.471061 | 1.4:-51255924 | None:intergenic |
| CAACTCATCAAGTAAAGAAA+AGG | 0.473575 | 1.4:+51253986 | MS.gene47399:CDS |
| TGCATCTGAACTCGCATAGT+TGG | 0.475884 | 1.4:-51251557 | None:intergenic |
| CAGTTTCAATTCTTCTTCAA+GGG | 0.476018 | 1.4:-51255359 | None:intergenic |
| GAGCAGTTAACATTGTCATC+AGG | 0.477398 | 1.4:+51253009 | MS.gene47399:CDS |
| TGAAGAAAGGCTTATGCAGT+TGG | 0.481774 | 1.4:+51255267 | MS.gene47399:CDS |
| CCTTGGCTTCCAACTCACTT+AGG | 0.483465 | 1.4:-51254031 | None:intergenic |
| GGCCGAAACAACCATGCAAA+TGG | 0.485609 | 1.4:+51256965 | MS.gene47399:CDS |
| GCAAAGACCGATTCAAAAGA+TGG | 0.485838 | 1.4:+51253705 | MS.gene47399:CDS |
| TGAACTATGTGAAGATCTAA+AGG | 0.486076 | 1.4:+51255156 | MS.gene47399:CDS |
| ATGAACGCCAGAAAGCTGTT+GGG | 0.486176 | 1.4:+51252874 | MS.gene47399:CDS |
| GGATGAATCCAGAAATTTGA+AGG | 0.488338 | 1.4:+51255021 | MS.gene47399:CDS |
| AATACAATCATCAGTCTCCT+TGG | 0.488486 | 1.4:-51251384 | None:intergenic |
| ATTGCTCCCTTATGGGAGCC+AGG | 0.490383 | 1.4:+51254399 | MS.gene47399:CDS |
| CTGCATAAGCCTTTCTTCAA+GGG | 0.493954 | 1.4:-51255263 | None:intergenic |
| TAACAGGGATCATTAAGATC+TGG | 0.494826 | 1.4:+51251505 | MS.gene47399:intron |
| TACTAACTGTGGCCTCTCCC+AGG | 0.496498 | 1.4:-51251531 | None:intergenic |
| GAAGAATTTAACTTCAGAGA+TGG | 0.498471 | 1.4:+51254520 | MS.gene47399:CDS |
| CCTTATGGGAGCCAGGTTGA+GGG | 0.500273 | 1.4:+51254406 | MS.gene47399:CDS |
| AATAGTGAGACAGAAAACTT+TGG | 0.500492 | 1.4:+51253038 | MS.gene47399:CDS |
| ATATTTGAGGCAGCAAAAGT+TGG | 0.501631 | 1.4:+51254364 | MS.gene47399:CDS |
| GCAAGAACTGGAAGAGGCGT+TGG | 0.504945 | 1.4:+51253383 | MS.gene47399:CDS |
| TAATGTTAGCAGGTACCAAA+GGG | 0.506277 | 1.4:+51251218 | MS.gene47399:intron |
| AGAAGCTAAATGGATATTTG+AGG | 0.507658 | 1.4:+51254351 | MS.gene47399:CDS |
| AGTGATGGACAGAGCCGGAC+GGG | 0.510231 | 1.4:+51252637 | MS.gene47399:CDS |
| TGGACGAAAGATGTCAAGCT+TGG | 0.516980 | 1.4:+51255195 | MS.gene47399:CDS |
| TGATAAAGCCAAATTGGAAT+CGG | 0.519468 | 1.4:+51254739 | MS.gene47399:CDS |
| TCTTTCCAGACAAGTGAAGA+AGG | 0.521847 | 1.4:+51253294 | MS.gene47399:CDS |
| TTGAATCTTGTCTTCCCGTC+CGG | 0.522115 | 1.4:-51252651 | None:intergenic |
| CAAGAACATCCCTTGAAGAA+AGG | 0.522981 | 1.4:+51255254 | MS.gene47399:CDS |
| TTATTTAGCGGGATTGAAAG+TGG | 0.524587 | 1.4:-51251586 | None:intergenic |
| CTGTAATTTGATACAGAACC+AGG | 0.530049 | 1.4:-51252562 | None:intergenic |
| TCTCAAGCTCATTGTTGCAA+TGG | 0.530061 | 1.4:+51251406 | MS.gene47399:CDS |
| TTCAGACTTCAAGCATAATG+AGG | 0.531055 | 1.4:-51255137 | None:intergenic |
| CCATGATTGCACTTATTTAG+CGG | 0.533424 | 1.4:-51251598 | None:intergenic |
| TCATTAAGATCTGGAATCCT+GGG | 0.533611 | 1.4:+51251514 | MS.gene47399:CDS |
| AACAGGACCCTTATAACAGC+AGG | 0.533976 | 1.4:+51255619 | MS.gene47399:CDS |
| TCAGCTTGAATAAAAGCTCA+AGG | 0.535155 | 1.4:-51253677 | None:intergenic |
| GGATACTTCAAGCAAAGCAT+TGG | 0.535535 | 1.4:-51254705 | None:intergenic |
| TTTCAGGGATCAAGAATCAA+GGG | 0.535819 | 1.4:+51251993 | MS.gene47399:intron |
| TTCAAGAGATAATTTGTCCA+AGG | 0.536501 | 1.4:+51251367 | MS.gene47399:CDS |
| TGCGGAGATGCAGTCTGAGA+TGG | 0.536596 | 1.4:+51254181 | MS.gene47399:CDS |
| CTGTCCATCACTCATGTATG+TGG | 0.536686 | 1.4:-51252626 | None:intergenic |
| GAAAGTTCAGGAACTTGAGA+TGG | 0.536733 | 1.4:+51253629 | MS.gene47399:CDS |
| GATGAACGCCAGAAAGCTGT+TGG | 0.539056 | 1.4:+51252873 | MS.gene47399:CDS |
| CGCTAAATAAGTGCAATCAT+GGG | 0.541016 | 1.4:+51251599 | MS.gene47399:CDS |
| CTAATGTTAGCAGGTACCAA+AGG | 0.542601 | 1.4:+51251217 | MS.gene47399:intron |
| GAGACTGTGTCAAGAAATGT+AGG | 0.543799 | 1.4:+51253567 | MS.gene47399:CDS |
| AACTGATGAAACATCTGAGA+TGG | 0.545150 | 1.4:+51253950 | MS.gene47399:CDS |
| AATAGGAATCATATAGTGAA+GGG | 0.548119 | 1.4:+51254560 | MS.gene47399:CDS |
| AGCCGAGGATTCCACAGGAA+AGG | 0.549503 | 1.4:+51252594 | MS.gene47399:CDS |
| ACGGGAAGACAAGATTCAAC+CGG | 0.549619 | 1.4:+51252655 | MS.gene47399:CDS |
| AGACACAAGTGAAGAGCTAC+GGG | 0.550051 | 1.4:+51252831 | MS.gene47399:CDS |
| ATTCTACATATGCTGTTGAA+AGG | 0.551016 | 1.4:-51252963 | None:intergenic |
| AAATGGCCTAGTAAAATCAA+TGG | 0.552140 | 1.4:+51256982 | MS.gene47399:CDS |
| AGTGTTGAATCTTCCTCTGT+TGG | 0.554660 | 1.4:+51252108 | MS.gene47399:CDS |
| AAAGATGTCAAGCTTGGAGA+AGG | 0.556998 | 1.4:+51255201 | MS.gene47399:CDS |
| GGCTTTATCAGCACGTAATG+TGG | 0.558296 | 1.4:-51254726 | None:intergenic |
| AACTCAGCCGAGGATTCCAC+AGG | 0.558753 | 1.4:+51252589 | MS.gene47399:CDS |
| AAGACACAAGTGAAGAGCTA+CGG | 0.560001 | 1.4:+51252830 | MS.gene47399:CDS |
| CCTAAGTGAGTTGGAAGCCA+AGG | 0.560218 | 1.4:+51254031 | MS.gene47399:CDS |
| CTGCATATTTAAGGCTCATG+TGG | 0.561749 | 1.4:-51257093 | None:intergenic |
| GATGCAAATGGAGAAGATTG+TGG | 0.563296 | 1.4:+51254601 | MS.gene47399:CDS |
| ACCTGTTAATGATGATCAGA+AGG | 0.563385 | 1.4:+51255426 | MS.gene47399:CDS |
| TTGGAAGATTCAATATCTCA+AGG | 0.563812 | 1.4:+51253057 | MS.gene47399:CDS |
| TGTTTAAGCTTCACAAGCAT+AGG | 0.565852 | 1.4:+51249658 | MS.gene47399:CDS |
| TACTTGATGAGTTGACCTCA+AGG | 0.566693 | 1.4:-51253977 | None:intergenic |
| TTCTCCACATACATGAGTGA+TGG | 0.568481 | 1.4:+51252622 | MS.gene47399:CDS |
| AAGTCAACAAATAGAACAGT+TGG | 0.569407 | 1.4:+51253329 | MS.gene47399:CDS |
| TCAACAAATAGAACAGTTGG+AGG | 0.572016 | 1.4:+51253332 | MS.gene47399:CDS |
| TATGGTGCAAGAACTGGAAG+AGG | 0.577822 | 1.4:+51253377 | MS.gene47399:CDS |
| TCACAGGTGGAAAGTGAGCA+TGG | 0.578671 | 1.4:+51255812 | MS.gene47399:intron |
| TTGTTCAAGATGATAAACCT+TGG | 0.581068 | 1.4:-51254048 | None:intergenic |
| ATACGAAAGACAACAATACA+TGG | 0.583728 | 1.4:+51255000 | MS.gene47399:CDS |
| TGAACGCCAGAAAGCTGTTG+GGG | 0.584160 | 1.4:+51252875 | MS.gene47399:CDS |
| AAGTGACGCAAGATGTGCCC+AGG | 0.584804 | 1.4:+51255306 | MS.gene47399:CDS |
| GGAGAAATTTCCCTTTCCTG+TGG | 0.586809 | 1.4:-51252605 | None:intergenic |
| ATTTAAAATGGAAATGCTGA+TGG | 0.589431 | 1.4:+51254874 | MS.gene47399:CDS |
| TACGGGCAGAAGCAAAGATG+TGG | 0.598071 | 1.4:+51252848 | MS.gene47399:CDS |
| AAATAGGAATCATATAGTGA+AGG | 0.598258 | 1.4:+51254559 | MS.gene47399:CDS |
| TCCTGCAGGTCATCATCTCA+AGG | 0.603501 | 1.4:+51256944 | MS.gene47399:intron |
| TGCAAAGTCAAGCAAAGTCA+CGG | 0.610444 | 1.4:+51251292 | MS.gene47399:CDS |
| GAGCCTTAAATATGCAGAGG+TGG | 0.611103 | 1.4:+51257099 | MS.gene47399:CDS |
| TCTAAATCAGCACAAGAAGT+CGG | 0.611494 | 1.4:+51253903 | MS.gene47399:CDS |
| TGATGATTACTGTGAAAGAG+TGG | 0.612656 | 1.4:+51254445 | MS.gene47399:CDS |
| AATTTAACTTCAGAGATGGA+TGG | 0.613832 | 1.4:+51254524 | MS.gene47399:CDS |
| AAAATTGTCAGAGCTGGTGG+AGG | 0.614393 | 1.4:+51254907 | MS.gene47399:CDS |
| AAGTAAAGAAAAGGAGATTG+GGG | 0.616752 | 1.4:+51253995 | MS.gene47399:CDS |
| AAGATCTGGAATCCTGGGAG+AGG | 0.617399 | 1.4:+51251519 | MS.gene47399:CDS |
| GTTAGCAGGTACCAAAGGGG+TGG | 0.618021 | 1.4:+51251222 | MS.gene47399:intron |
| ACAAGATAAACTTCAACTAG+AGG | 0.620249 | 1.4:+51254067 | MS.gene47399:CDS |
| GAGTGATGGACAGAGCCGGA+CGG | 0.623508 | 1.4:+51252636 | MS.gene47399:CDS |
| ATCTGAGATGGAAAACCTTG+AGG | 0.623817 | 1.4:+51253962 | MS.gene47399:CDS |
| ACATGAGTGATGGACAGAGC+CGG | 0.627982 | 1.4:+51252632 | MS.gene47399:CDS |
| CTTCTTATAAGATGATGCAC+CGG | 0.628745 | 1.4:-51252773 | None:intergenic |
| TCATCTTATAAGAAGACCAA+TGG | 0.630420 | 1.4:+51252781 | MS.gene47399:CDS |
| TTAGCAGGTACCAAAGGGGT+GGG | 0.638356 | 1.4:+51251223 | MS.gene47399:intron |
| AGAACTTGTAATGAAGCTCA+AGG | 0.638966 | 1.4:+51257135 | MS.gene47399:CDS |
| ACGTACAAAATCAATGCTAG+AGG | 0.640837 | 1.4:+51257039 | MS.gene47399:CDS |
| ACTTCAACTAGAGGAGCACA+TGG | 0.641782 | 1.4:+51254076 | MS.gene47399:CDS |
| AGAGTCCATATCACCAACAG+AGG | 0.642774 | 1.4:-51252121 | None:intergenic |
| TCCCAAAATATGCAAGACAC+CGG | 0.646873 | 1.4:+51252754 | MS.gene47399:CDS |
| ACGGGCAGAAGCAAAGATGT+GGG | 0.648492 | 1.4:+51252849 | MS.gene47399:CDS |
| GAACGCCAGAAAGCTGTTGG+GGG | 0.651959 | 1.4:+51252876 | MS.gene47399:CDS |
| GATGATTACTGTGAAAGAGT+GGG | 0.655984 | 1.4:+51254446 | MS.gene47399:CDS |
| GAGAAGAGTTATTATTAACA+GGG | 0.657392 | 1.4:-51252708 | None:intergenic |
| CATGAGCCTTAAATATGCAG+AGG | 0.671496 | 1.4:+51257096 | MS.gene47399:CDS |
| TGCGAAATGGAAGTTGTCAG+TGG | 0.678162 | 1.4:+51251315 | MS.gene47399:CDS |
| ATAGTTGGTCATACTAACTG+TGG | 0.684689 | 1.4:-51251542 | None:intergenic |
| TTCAGAAGACATGCTCCCTG+AGG | 0.688861 | 1.4:+51253824 | MS.gene47399:CDS |
| GAAGAATGTGAATATCTCAG+AGG | 0.698361 | 1.4:+51254269 | MS.gene47399:CDS |
| ACTTGTAATGAAGCTCAAGG+TGG | 0.701378 | 1.4:+51257138 | MS.gene47399:CDS |
| AAGACCGATTCAAAAGATGG+AGG | 0.703694 | 1.4:+51253708 | MS.gene47399:CDS |
| TTACAGCTATAACTCAGCCG+AGG | 0.705059 | 1.4:+51252579 | MS.gene47399:CDS |
| CAGCAGGAAACATCAGACTG+AGG | 0.735534 | 1.4:+51255635 | MS.gene47399:CDS |
| TCAACTAGAGGAGCACATGG+AGG | 0.736506 | 1.4:+51254079 | MS.gene47399:CDS |
| AAGGCTCCAAGAGAAGATTG+CGG | 0.741014 | 1.4:+51254163 | MS.gene47399:CDS |
| AATGTTAGCAGGTACCAAAG+GGG | 0.753582 | 1.4:+51251219 | MS.gene47399:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 51249657 | 51257189 | 51249657 | ID=MS.gene47399 |
| chr1.4 | mRNA | 51249657 | 51257189 | 51249657 | ID=MS.gene47399.t1;Parent=MS.gene47399 |
| chr1.4 | exon | 51249657 | 51249737 | 51249657 | ID=MS.gene47399.t1.exon1;Parent=MS.gene47399.t1 |
| chr1.4 | CDS | 51249657 | 51249737 | 51249657 | ID=cds.MS.gene47399.t1;Parent=MS.gene47399.t1 |
| chr1.4 | exon | 51251230 | 51251427 | 51251230 | ID=MS.gene47399.t1.exon2;Parent=MS.gene47399.t1 |
| chr1.4 | CDS | 51251230 | 51251427 | 51251230 | ID=cds.MS.gene47399.t1;Parent=MS.gene47399.t1 |
| chr1.4 | exon | 51251511 | 51251633 | 51251511 | ID=MS.gene47399.t1.exon3;Parent=MS.gene47399.t1 |
| chr1.4 | CDS | 51251511 | 51251633 | 51251511 | ID=cds.MS.gene47399.t1;Parent=MS.gene47399.t1 |
| chr1.4 | exon | 51251879 | 51251916 | 51251879 | ID=MS.gene47399.t1.exon4;Parent=MS.gene47399.t1 |
| chr1.4 | CDS | 51251879 | 51251916 | 51251879 | ID=cds.MS.gene47399.t1;Parent=MS.gene47399.t1 |
| chr1.4 | exon | 51251999 | 51252173 | 51251999 | ID=MS.gene47399.t1.exon5;Parent=MS.gene47399.t1 |
| chr1.4 | CDS | 51251999 | 51252173 | 51251999 | ID=cds.MS.gene47399.t1;Parent=MS.gene47399.t1 |
| chr1.4 | exon | 51252550 | 51255456 | 51252550 | ID=MS.gene47399.t1.exon6;Parent=MS.gene47399.t1 |
| chr1.4 | CDS | 51252550 | 51255456 | 51252550 | ID=cds.MS.gene47399.t1;Parent=MS.gene47399.t1 |
| chr1.4 | exon | 51255534 | 51255656 | 51255534 | ID=MS.gene47399.t1.exon7;Parent=MS.gene47399.t1 |
| chr1.4 | CDS | 51255534 | 51255656 | 51255534 | ID=cds.MS.gene47399.t1;Parent=MS.gene47399.t1 |
| chr1.4 | exon | 51255818 | 51255954 | 51255818 | ID=MS.gene47399.t1.exon8;Parent=MS.gene47399.t1 |
| chr1.4 | CDS | 51255818 | 51255954 | 51255818 | ID=cds.MS.gene47399.t1;Parent=MS.gene47399.t1 |
| chr1.4 | exon | 51256952 | 51257189 | 51256952 | ID=MS.gene47399.t1.exon9;Parent=MS.gene47399.t1 |
| chr1.4 | CDS | 51256952 | 51257189 | 51256952 | ID=cds.MS.gene47399.t1;Parent=MS.gene47399.t1 |
| Gene Sequence |
| Protein sequence |
