Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47704.t1 | AET00244.2 | 97.6 | 286 | 7 | 0 | 1 | 286 | 1 | 286 | 1.60E-159 | 572 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47704.t1 | Q56XY2 | 81.2 | 282 | 53 | 0 | 1 | 282 | 1 | 282 | 1.9e-137 | 490.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47704.t1 | G7KCW9 | 97.6 | 286 | 7 | 0 | 1 | 286 | 1 | 286 | 1.1e-159 | 572.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49124 | MS.gene47704 | PPI |
| MS.gene47704 | MS.gene061152 | PPI |
| MS.gene25822 | MS.gene47704 | PPI |
| MS.gene47704 | MS.gene006260 | PPI |
| MS.gene34135 | MS.gene47704 | PPI |
| MS.gene70743 | MS.gene47704 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47704.t1 | MTR_5g089950 | 96.875 | 288 | 9 | 0 | 1 | 288 | 1 | 288 | 0.0 | 573 |
| MS.gene47704.t1 | MTR_8g062340 | 96.503 | 286 | 10 | 0 | 1 | 286 | 1 | 286 | 0.0 | 572 |
| MS.gene47704.t1 | MTR_8g062340 | 96.454 | 282 | 10 | 0 | 1 | 282 | 1 | 282 | 0.0 | 563 |
| MS.gene47704.t1 | MTR_3g080040 | 38.521 | 257 | 150 | 4 | 1 | 256 | 1 | 250 | 1.07e-55 | 181 |
| MS.gene47704.t1 | MTR_1g100240 | 30.729 | 192 | 118 | 5 | 6 | 190 | 61 | 244 | 1.42e-19 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47704.t1 | AT5G22370 | 81.206 | 282 | 53 | 0 | 1 | 282 | 1 | 282 | 6.64e-172 | 478 |
| MS.gene47704.t1 | AT5G22370 | 81.206 | 282 | 53 | 0 | 1 | 282 | 1 | 282 | 6.64e-172 | 478 |
| MS.gene47704.t1 | AT5G22370 | 81.206 | 282 | 53 | 0 | 1 | 282 | 1 | 282 | 6.64e-172 | 478 |
| MS.gene47704.t1 | AT4G12790 | 39.683 | 252 | 144 | 4 | 1 | 251 | 1 | 245 | 1.04e-56 | 184 |
| MS.gene47704.t1 | AT4G12790 | 39.683 | 252 | 144 | 4 | 1 | 251 | 1 | 245 | 1.04e-56 | 184 |
| MS.gene47704.t1 | AT4G12790 | 39.683 | 252 | 144 | 4 | 1 | 251 | 1 | 245 | 1.04e-56 | 184 |
| MS.gene47704.t1 | AT4G12790 | 39.683 | 252 | 144 | 4 | 1 | 251 | 1 | 245 | 1.04e-56 | 184 |
| MS.gene47704.t1 | AT4G12790 | 39.683 | 252 | 144 | 4 | 1 | 251 | 1 | 245 | 1.04e-56 | 184 |
| MS.gene47704.t1 | AT4G12790 | 39.683 | 252 | 144 | 4 | 1 | 251 | 1 | 245 | 1.04e-56 | 184 |
| MS.gene47704.t1 | AT4G21800 | 28.877 | 187 | 128 | 4 | 6 | 190 | 45 | 228 | 1.94e-17 | 82.0 |
| MS.gene47704.t1 | AT4G21800 | 28.877 | 187 | 128 | 4 | 6 | 190 | 45 | 228 | 1.94e-17 | 82.0 |
Find 50 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCATTTCCTCAATCTTAT+TGG | 0.152456 | 5.3:+72515075 | MS.gene47704:CDS |
| GAAGGTTGCTGTTATCAATT+TGG | 0.225710 | 5.3:+72515101 | MS.gene47704:CDS |
| CAAAGAGAGTGTGGGGAATT+TGG | 0.232122 | 5.3:+72517294 | MS.gene47704:CDS |
| CAACATTCTCTTGGTCCTAA+TGG | 0.275811 | 5.3:+72515308 | MS.gene47704:CDS |
| GTAATTGGTCCTCCTGGTTC+TGG | 0.317452 | 5.3:+72515027 | MS.gene47704:CDS |
| AACATTCTCTTGGTCCTAAT+GGG | 0.318429 | 5.3:+72515309 | MS.gene47704:CDS |
| GAGTTTCATGACGACATTCT+TGG | 0.336741 | 5.3:-72516382 | None:intergenic |
| CATATGTAGCATTGTGGATA+AGG | 0.347185 | 5.3:-72516580 | None:intergenic |
| CTGGCGTACCTGAATATCTA+AGG | 0.360898 | 5.3:-72517196 | None:intergenic |
| GTGTTTGGGCAAGTAGTAAT+TGG | 0.379485 | 5.3:+72515012 | MS.gene47704:CDS |
| CTTATCCACAATGCTACATA+TGG | 0.405899 | 5.3:+72516581 | MS.gene47704:CDS |
| TTGCAATGGGAGCTCCTGAT+TGG | 0.413722 | 5.3:+72517389 | MS.gene47704:CDS |
| GCAGTTAGCGGCAGTTCATT+TGG | 0.420246 | 5.3:+72516503 | MS.gene47704:intron |
| TGCAATGGGAGCTCCTGATT+GGG | 0.457623 | 5.3:+72517390 | MS.gene47704:CDS |
| TATCTATAATAATCCCAATC+AGG | 0.464822 | 5.3:-72517403 | None:intergenic |
| GAGTTTAGCAAGATTGCAAT+GGG | 0.466488 | 5.3:+72517376 | MS.gene47704:CDS |
| ATCCGCACTCTGCTAAGTTC+AGG | 0.468701 | 5.3:+72516835 | MS.gene47704:CDS |
| AGCAGGTCTTGTATACTGTA+TGG | 0.470732 | 5.3:+72516102 | MS.gene47704:intron |
| CCTTCCTTCCAATAAGATTG+AGG | 0.475744 | 5.3:-72515083 | None:intergenic |
| CCTCAATCTTATTGGAAGGA+AGG | 0.477925 | 5.3:+72515083 | MS.gene47704:CDS |
| CATAAAGAAATTAAACTTGA+GGG | 0.478237 | 5.3:+72516404 | MS.gene47704:CDS |
| CAAGTAGTAATTGGTCCTCC+TGG | 0.490589 | 5.3:+72515021 | MS.gene47704:CDS |
| ATTGATTTAATTGAGAGCTA+CGG | 0.505811 | 5.3:+72516633 | MS.gene47704:CDS |
| ATGTAATGACCTTTCAGAAG+AGG | 0.513803 | 5.3:-72516169 | None:intergenic |
| CTCATCTTTGTAGTGACCCT+GGG | 0.515241 | 5.3:+72516532 | MS.gene47704:CDS |
| TACGGTAATGAATCATTAGC+TGG | 0.515679 | 5.3:-72515126 | None:intergenic |
| ATTGAGAGCTACGGAAAGCT+AGG | 0.526200 | 5.3:+72516642 | MS.gene47704:CDS |
| AATGCACTGATGTACTTCCC+AGG | 0.529333 | 5.3:-72516549 | None:intergenic |
| GTCATGATACAACATTCTCT+TGG | 0.532392 | 5.3:+72515299 | MS.gene47704:CDS |
| GCTAGCAAATATGTACCCAT+TGG | 0.534659 | 5.3:-72517335 | None:intergenic |
| AGCTGATAGACAAAACCAAT+GGG | 0.538423 | 5.3:+72517320 | MS.gene47704:CDS |
| GCTCATCTTTGTAGTGACCC+TGG | 0.547978 | 5.3:+72516531 | MS.gene47704:CDS |
| TGAGTTTAGCAAGATTGCAA+TGG | 0.553622 | 5.3:+72517375 | MS.gene47704:CDS |
| ATTTCCTCAATCTTATTGGA+AGG | 0.572574 | 5.3:+72515079 | MS.gene47704:CDS |
| AAGCTGATAGACAAAACCAA+TGG | 0.581118 | 5.3:+72517319 | MS.gene47704:CDS |
| TCATAAAGAAATTAAACTTG+AGG | 0.584514 | 5.3:+72516403 | MS.gene47704:CDS |
| TTTACAGGACAAAGAGAGTG+TGG | 0.586407 | 5.3:+72517285 | MS.gene47704:intron |
| ACATTCTCTTGGTCCTAATG+GGG | 0.590405 | 5.3:+72515310 | MS.gene47704:CDS |
| TTGACAAGACATTTATGTGG+GGG | 0.593918 | 5.3:-72516608 | None:intergenic |
| TTACAGGACAAAGAGAGTGT+GGG | 0.598599 | 5.3:+72517286 | MS.gene47704:intron |
| AAATTGAAACCTCTTCTGAA+AGG | 0.610094 | 5.3:+72516160 | MS.gene47704:CDS |
| TACAGGACAAAGAGAGTGTG+GGG | 0.620735 | 5.3:+72517287 | MS.gene47704:intron |
| TGTGAAGTCGTTGAACACTA+CGG | 0.628659 | 5.3:+72517156 | MS.gene47704:CDS |
| ATGCACTGATGTACTTCCCA+GGG | 0.635507 | 5.3:-72516548 | None:intergenic |
| GAGTTCCATATGTAGCATTG+TGG | 0.646041 | 5.3:-72516586 | None:intergenic |
| TTTGACAAGACATTTATGTG+GGG | 0.662064 | 5.3:-72516609 | None:intergenic |
| TGATTGTGCTGTCAACATTG+AGG | 0.665600 | 5.3:+72515256 | MS.gene47704:CDS |
| CACCTGAACTTAGCAGAGTG+CGG | 0.669126 | 5.3:-72516837 | None:intergenic |
| CATTCTCTTGGTCCTAATGG+GGG | 0.674832 | 5.3:+72515311 | MS.gene47704:CDS |
| TATTTGCAGGAAGCTCACAA+AGG | 0.713643 | 5.3:+72517128 | MS.gene47704:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTATTTTTATAAGCTTTA+TGG | + | chr5.3:72515913-72515932 | MS.gene47704:intron | 15.0% |
| !!! | TATAGTTAAATTAGTTGATA+TGG | + | chr5.3:72515208-72515227 | MS.gene47704:intron | 15.0% |
| !! | AAACTACTATTATTCCTATT+TGG | + | chr5.3:72516246-72516265 | MS.gene47704:intron | 20.0% |
| !! | AACTATTACATGTGTTTATA+TGG | + | chr5.3:72515616-72515635 | MS.gene47704:intron | 20.0% |
| !! | ATCATTCTTAAATCCTTAAA+AGG | - | chr5.3:72515361-72515380 | None:intergenic | 20.0% |
| !! | CAACTTAATTATGTACTTAT+AGG | + | chr5.3:72515802-72515821 | MS.gene47704:intron | 20.0% |
| !! | CATAAAGAAATTAAACTTGA+GGG | + | chr5.3:72516404-72516423 | MS.gene47704:CDS | 20.0% |
| !! | CATATCTATATTCAATATCA+AGG | - | chr5.3:72515238-72515257 | None:intergenic | 20.0% |
| !! | TCATAAAGAAATTAAACTTG+AGG | + | chr5.3:72516403-72516422 | MS.gene47704:CDS | 20.0% |
| !!! | AAATGCATTTTTTTATATGC+TGG | + | chr5.3:72516694-72516713 | MS.gene47704:intron | 20.0% |
| !!! | AATCTATTGTTCTTTTGAAA+GGG | + | chr5.3:72515734-72515753 | MS.gene47704:intron | 20.0% |
| !!! | TTAGTTCTTAAAATAAGACA+TGG | - | chr5.3:72516465-72516484 | None:intergenic | 20.0% |
| ! | AAATCAGAAACAATTTGACA+TGG | - | chr5.3:72517044-72517063 | None:intergenic | 25.0% |
| ! | ACAAAAATGTTTGAAAGAGA+AGG | - | chr5.3:72515157-72515176 | None:intergenic | 25.0% |
| ! | AGTGTATTTAAGGATGATTT+AGG | - | chr5.3:72516223-72516242 | None:intergenic | 25.0% |
| ! | ATCTAGAGAAAAATATTGAC+TGG | + | chr5.3:72516128-72516147 | MS.gene47704:CDS | 25.0% |
| ! | CTTTCAAAAGAACAATAGAT+TGG | - | chr5.3:72515735-72515754 | None:intergenic | 25.0% |
| ! | GAATTATGTGTTATATTTGC+AGG | + | chr5.3:72517115-72517134 | MS.gene47704:intron | 25.0% |
| ! | GATTTAGAGATTATTGAGTT+GGG | + | chr5.3:72515378-72515397 | MS.gene47704:intron | 25.0% |
| ! | TATCTATAATAATCCCAATC+AGG | - | chr5.3:72517406-72517425 | None:intergenic | 25.0% |
| ! | TCATAACCAATAGTACTATT+GGG | + | chr5.3:72515493-72515512 | MS.gene47704:intron | 25.0% |
| ! | TGATATATGATACCACATTA+TGG | + | chr5.3:72515409-72515428 | MS.gene47704:intron | 25.0% |
| ! | TGATTTAGAGATTATTGAGT+TGG | + | chr5.3:72515377-72515396 | MS.gene47704:intron | 25.0% |
| ! | TGTTTATATGGCAATGTTAT+TGG | + | chr5.3:72515628-72515647 | MS.gene47704:intron | 25.0% |
| ! | TTGCATGAGAAAAGAAAAAA+AGG | - | chr5.3:72517430-72517449 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr5.3:72515791-72515810 | None:intergenic | 25.0% |
| !! | ATTGATTTAATTGAGAGCTA+CGG | + | chr5.3:72516633-72516652 | MS.gene47704:CDS | 25.0% |
| !! | CAATCTATTGTTCTTTTGAA+AGG | + | chr5.3:72515733-72515752 | MS.gene47704:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | - | chr5.3:72515790-72515809 | None:intergenic | 25.0% |
| !! | TTTTACAACCTTAGATATTC+AGG | + | chr5.3:72517188-72517207 | MS.gene47704:CDS | 25.0% |
| !! | TTTTGACAAGACATTTATGT+GGG | - | chr5.3:72516613-72516632 | None:intergenic | 25.0% |
| !! | TTTTTGACAAGACATTTATG+TGG | - | chr5.3:72516614-72516633 | None:intergenic | 25.0% |
| !!! | AAAAAATGCATTTTAACCCT+TGG | - | chr5.3:72516687-72516706 | None:intergenic | 25.0% |
| !!! | GTTCTTTTTTTCTCCTTTTA+AGG | + | chr5.3:72515345-72515364 | MS.gene47704:intron | 25.0% |
| !!! | TAATAAAAGGTATTGAGGTA+GGG | - | chr5.3:72515764-72515783 | None:intergenic | 25.0% |
| !!! | TCCATTTTTTTTAGCTTATC+TGG | - | chr5.3:72516012-72516031 | None:intergenic | 25.0% |
| !!! | TTAATAAAAGGTATTGAGGT+AGG | - | chr5.3:72515765-72515784 | None:intergenic | 25.0% |
| !!! | TTCTGTTGAAGTTTTAAAGT+TGG | + | chr5.3:72517254-72517273 | MS.gene47704:intron | 25.0% |
| AAATTGAAACCTCTTCTGAA+AGG | + | chr5.3:72516160-72516179 | MS.gene47704:CDS | 30.0% | |
| AACTATTACACTCAGAAGAA+TGG | - | chr5.3:72516896-72516915 | None:intergenic | 30.0% | |
| ATAAGTACTAGTGAGATTGT+TGG | - | chr5.3:72515988-72516007 | None:intergenic | 30.0% | |
| ATGAAAAACCTAAGCATATC+TGG | - | chr5.3:72517218-72517237 | None:intergenic | 30.0% | |
| ATTTCCTCAATCTTATTGGA+AGG | + | chr5.3:72515079-72515098 | MS.gene47704:CDS | 30.0% | |
| CAATTTGACATGGTATGAAA+TGG | - | chr5.3:72517034-72517053 | None:intergenic | 30.0% | |
| GAAGAAAAAATAGTTCCACT+TGG | - | chr5.3:72516353-72516372 | None:intergenic | 30.0% | |
| GCCAGATAAGCTAAAAAAAA+TGG | + | chr5.3:72516008-72516027 | MS.gene47704:intron | 30.0% | |
| GGAAAAACTACTTACTGTAA+TGG | + | chr5.3:72515048-72515067 | MS.gene47704:CDS | 30.0% | |
| GTCATAACCAATAGTACTAT+TGG | + | chr5.3:72515492-72515511 | MS.gene47704:intron | 30.0% | |
| TCTCATTTCCTCAATCTTAT+TGG | + | chr5.3:72515075-72515094 | MS.gene47704:CDS | 30.0% | |
| TGTTTGTGTTAGTGTTTCAT+AGG | + | chr5.3:72515660-72515679 | MS.gene47704:intron | 30.0% | |
| TTGAAAGAGAAGGATACATA+CGG | - | chr5.3:72515147-72515166 | None:intergenic | 30.0% | |
| TTTGACAAGACATTTATGTG+GGG | - | chr5.3:72516612-72516631 | None:intergenic | 30.0% | |
| ! | AAGTTGGATTTTCCTTTTAC+AGG | + | chr5.3:72517270-72517289 | MS.gene47704:intron | 30.0% |
| ! | AGAGAAAAATATTGACTGGT+TGG | + | chr5.3:72516132-72516151 | MS.gene47704:CDS | 30.0% |
| ! | ATAGTTTTTCTGAGTGTGAT+AGG | + | chr5.3:72516910-72516929 | MS.gene47704:intron | 30.0% |
| ! | GTAGTTTGTGAGTGTATTTA+AGG | - | chr5.3:72516233-72516252 | None:intergenic | 30.0% |
| ! | TATTTACTCTTCGATTTTCC+TGG | + | chr5.3:72516327-72516346 | MS.gene47704:CDS | 30.0% |
| ! | TGTTTCTGATTTCATCCTTT+GGG | + | chr5.3:72517052-72517071 | MS.gene47704:intron | 30.0% |
| !! | GGCTTTAATAAAAGGTATTG+AGG | - | chr5.3:72515769-72515788 | None:intergenic | 30.0% |
| !! | TTGTTTCTGATTTCATCCTT+TGG | + | chr5.3:72517051-72517070 | MS.gene47704:intron | 30.0% |
| AACATTCTCTTGGTCCTAAT+GGG | + | chr5.3:72515309-72515328 | MS.gene47704:CDS | 35.0% | |
| AAGCTGATAGACAAAACCAA+TGG | + | chr5.3:72517319-72517338 | MS.gene47704:CDS | 35.0% | |
| AGCTGATAGACAAAACCAAT+GGG | + | chr5.3:72517320-72517339 | MS.gene47704:CDS | 35.0% | |
| ATGTAATGACCTTTCAGAAG+AGG | - | chr5.3:72516172-72516191 | None:intergenic | 35.0% | |
| CATATGTAGCATTGTGGATA+AGG | - | chr5.3:72516583-72516602 | None:intergenic | 35.0% | |
| CTAGAGTAGTTTAGCCAAAT+AGG | - | chr5.3:72516263-72516282 | None:intergenic | 35.0% | |
| CTTATCCACAATGCTACATA+TGG | + | chr5.3:72516581-72516600 | MS.gene47704:CDS | 35.0% | |
| GAGATTGTTGGATGAACTTA+TGG | - | chr5.3:72515976-72515995 | None:intergenic | 35.0% | |
| GAGTTTAGCAAGATTGCAAT+GGG | + | chr5.3:72517376-72517395 | MS.gene47704:CDS | 35.0% | |
| GCACGTCTGTATAAAAATCA+AGG | - | chr5.3:72516779-72516798 | None:intergenic | 35.0% | |
| GTCATGATACAACATTCTCT+TGG | + | chr5.3:72515299-72515318 | MS.gene47704:CDS | 35.0% | |
| TAACCAATAGTACTATTGGG+TGG | + | chr5.3:72515496-72515515 | MS.gene47704:intron | 35.0% | |
| TACGGTAATGAATCATTAGC+TGG | - | chr5.3:72515129-72515148 | None:intergenic | 35.0% | |
| TGAGTTTAGCAAGATTGCAA+TGG | + | chr5.3:72517375-72517394 | MS.gene47704:CDS | 35.0% | |
| TGTAATTACTTGAGTGCCAA+GGG | + | chr5.3:72516668-72516687 | MS.gene47704:intron | 35.0% | |
| TGTTAGTGTTTCATAGGTGA+TGG | + | chr5.3:72515666-72515685 | MS.gene47704:intron | 35.0% | |
| TGTTCATTCTATGCAGTTAG+CGG | + | chr5.3:72516491-72516510 | MS.gene47704:intron | 35.0% | |
| TTGACAAGACATTTATGTGG+GGG | - | chr5.3:72516611-72516630 | None:intergenic | 35.0% | |
| TTTACTTGTGTTGTACAAGC+AGG | + | chr5.3:72516085-72516104 | MS.gene47704:intron | 35.0% | |
| ! | CCAAACAGGGCTTTAATAAA+AGG | - | chr5.3:72515777-72515796 | None:intergenic | 35.0% |
| ! | CCTTTTATTAAAGCCCTGTT+TGG | + | chr5.3:72515774-72515793 | MS.gene47704:intron | 35.0% |
| ! | GAAGGTTGCTGTTATCAATT+TGG | + | chr5.3:72515101-72515120 | MS.gene47704:CDS | 35.0% |
| ! | TAAGTAGTTTTTCCAGAACC+AGG | - | chr5.3:72515042-72515061 | None:intergenic | 35.0% |
| !! | AGAGATTATTGAGTTGGGTA+GGG | + | chr5.3:72515383-72515402 | MS.gene47704:intron | 35.0% |
| !! | TAGAGATTATTGAGTTGGGT+AGG | + | chr5.3:72515382-72515401 | MS.gene47704:intron | 35.0% |
| AAAAATAGTTCCACTTGGCC+AGG | - | chr5.3:72516348-72516367 | None:intergenic | 40.0% | |
| ACATTCTCTTGGTCCTAATG+GGG | + | chr5.3:72515310-72515329 | MS.gene47704:CDS | 40.0% | |
| CAACATTCTCTTGGTCCTAA+TGG | + | chr5.3:72515308-72515327 | MS.gene47704:CDS | 40.0% | |
| CACTCTCTTTGTCCTGTAAA+AGG | - | chr5.3:72517285-72517304 | None:intergenic | 40.0% | |
| CCTCAATCTTATTGGAAGGA+AGG | + | chr5.3:72515083-72515102 | MS.gene47704:CDS | 40.0% | |
| CCTTCCTTCCAATAAGATTG+AGG | - | chr5.3:72515086-72515105 | None:intergenic | 40.0% | |
| CTAAGTTCAGGTGTGATTTG+TGG | + | chr5.3:72516847-72516866 | MS.gene47704:intron | 40.0% | |
| CTGTAATTACTTGAGTGCCA+AGG | + | chr5.3:72516667-72516686 | MS.gene47704:intron | 40.0% | |
| GAGTTCCATATGTAGCATTG+TGG | - | chr5.3:72516589-72516608 | None:intergenic | 40.0% | |
| GAGTTTCATGACGACATTCT+TGG | - | chr5.3:72516385-72516404 | None:intergenic | 40.0% | |
| GCTAGCAAATATGTACCCAT+TGG | - | chr5.3:72517338-72517357 | None:intergenic | 40.0% | |
| GTGTTTGGGCAAGTAGTAAT+TGG | + | chr5.3:72515012-72515031 | MS.gene47704:CDS | 40.0% | |
| TATTTGCAGGAAGCTCACAA+AGG | + | chr5.3:72517128-72517147 | MS.gene47704:intron | 40.0% | |
| TGATTGTGCTGTCAACATTG+AGG | + | chr5.3:72515256-72515275 | MS.gene47704:CDS | 40.0% | |
| TGGATAGCTAAACAGACACT+AGG | + | chr5.3:72516028-72516047 | MS.gene47704:intron | 40.0% | |
| TGTGAAGTCGTTGAACACTA+CGG | + | chr5.3:72517156-72517175 | MS.gene47704:CDS | 40.0% | |
| TGTGGAGATTCTTTACCTAC+TGG | + | chr5.3:72516870-72516889 | MS.gene47704:intron | 40.0% | |
| TTTACAGGACAAAGAGAGTG+TGG | + | chr5.3:72517285-72517304 | MS.gene47704:intron | 40.0% | |
| ! | AGCAGGTCTTGTATACTGTA+TGG | + | chr5.3:72516102-72516121 | MS.gene47704:intron | 40.0% |
| ! | CTGATTTCATCCTTTGGGTT+AGG | + | chr5.3:72517057-72517076 | MS.gene47704:intron | 40.0% |
| ! | CTTATCCCACTAAGTTGGAT+CGG | - | chr5.3:72515454-72515473 | None:intergenic | 40.0% |
| ! | TTACAGGACAAAGAGAGTGT+GGG | + | chr5.3:72517286-72517305 | MS.gene47704:intron | 40.0% |
| !! | GGTATATAGCATCGACACTT+CGG | + | chr5.3:72515523-72515542 | MS.gene47704:intron | 40.0% |
| AAACCGTGTACCTAACCCAA+AGG | - | chr5.3:72517070-72517089 | None:intergenic | 45.0% | |
| ATGTAGCCGATCCAACTTAG+TGG | + | chr5.3:72515445-72515464 | MS.gene47704:intron | 45.0% | |
| ATTGAGAGCTACGGAAAGCT+AGG | + | chr5.3:72516642-72516661 | MS.gene47704:CDS | 45.0% | |
| CAACTTAGTGGGATAAGGTC+TGG | + | chr5.3:72515457-72515476 | MS.gene47704:intron | 45.0% | |
| CAAGTAGTAATTGGTCCTCC+TGG | + | chr5.3:72515021-72515040 | MS.gene47704:CDS | 45.0% | |
| CAGACCTTATCCCACTAAGT+TGG | - | chr5.3:72515459-72515478 | None:intergenic | 45.0% | |
| CAGAGTTACTTACCCCCATT+AGG | - | chr5.3:72515326-72515345 | None:intergenic | 45.0% | |
| CATTCTCTTGGTCCTAATGG+GGG | + | chr5.3:72515311-72515330 | MS.gene47704:CDS | 45.0% | |
| CCAATAGTACTATTGGGTGG+TGG | + | chr5.3:72515499-72515518 | MS.gene47704:intron | 45.0% | |
| CCACCACCCAATAGTACTAT+TGG | - | chr5.3:72515502-72515521 | None:intergenic | 45.0% | |
| CGATCCAACTTAGTGGGATA+AGG | + | chr5.3:72515452-72515471 | MS.gene47704:intron | 45.0% | |
| CTCATCTTTGTAGTGACCCT+GGG | + | chr5.3:72516532-72516551 | MS.gene47704:CDS | 45.0% | |
| CTGGCGTACCTGAATATCTA+AGG | - | chr5.3:72517199-72517218 | None:intergenic | 45.0% | |
| GATCAAATGGCGCCATAATG+TGG | - | chr5.3:72515424-72515443 | None:intergenic | 45.0% | |
| GATCGGCTACATGGATCAAA+TGG | - | chr5.3:72515437-72515456 | None:intergenic | 45.0% | |
| TGTAGCCGATCCAACTTAGT+GGG | + | chr5.3:72515446-72515465 | MS.gene47704:intron | 45.0% | |
| ! | AATGCACTGATGTACTTCCC+AGG | - | chr5.3:72516552-72516571 | None:intergenic | 45.0% |
| ! | ACTAAGTTGGATCGGCTACA+TGG | - | chr5.3:72515446-72515465 | None:intergenic | 45.0% |
| ! | ACTTCGGATTGAAAGCGTGT+TGG | + | chr5.3:72515539-72515558 | MS.gene47704:intron | 45.0% |
| ! | ATAGTACTATTGGGTGGTGG+TGG | + | chr5.3:72515502-72515521 | MS.gene47704:intron | 45.0% |
| ! | ATGCACTGATGTACTTCCCA+GGG | - | chr5.3:72516551-72516570 | None:intergenic | 45.0% |
| ! | CAAAGAGAGTGTGGGGAATT+TGG | + | chr5.3:72517294-72517313 | MS.gene47704:CDS | 45.0% |
| ! | CATCCTTTGGGTTAGGTACA+CGG | + | chr5.3:72517064-72517083 | MS.gene47704:intron | 45.0% |
| ! | CTTCGGATTGAAAGCGTGTT+GGG | + | chr5.3:72515540-72515559 | MS.gene47704:intron | 45.0% |
| ! | GTAGTTTTTCCAGAACCAGG+AGG | - | chr5.3:72515039-72515058 | None:intergenic | 45.0% |
| ! | TACAGGACAAAGAGAGTGTG+GGG | + | chr5.3:72517287-72517306 | MS.gene47704:intron | 45.0% |
| ! | TTCAGGTGTGATTTGTGGTG+TGG | + | chr5.3:72516852-72516871 | MS.gene47704:intron | 45.0% |
| ATCCGCACTCTGCTAAGTTC+AGG | + | chr5.3:72516835-72516854 | MS.gene47704:CDS | 50.0% | |
| ATGTGTCAGACTGTCAGTGC+CGG | - | chr5.3:72515569-72515588 | None:intergenic | 50.0% | |
| CACCTGAACTTAGCAGAGTG+CGG | - | chr5.3:72516840-72516859 | None:intergenic | 50.0% | |
| CACTCAGAAGAATGGCCAGT+AGG | - | chr5.3:72516888-72516907 | None:intergenic | 50.0% | |
| CAGGTACGCCAGATATGCTT+AGG | + | chr5.3:72517207-72517226 | MS.gene47704:intron | 50.0% | |
| GCAGTTAGCGGCAGTTCATT+TGG | + | chr5.3:72516503-72516522 | MS.gene47704:intron | 50.0% | |
| GCTCATCTTTGTAGTGACCC+TGG | + | chr5.3:72516531-72516550 | MS.gene47704:CDS | 50.0% | |
| GTAATTGGTCCTCCTGGTTC+TGG | + | chr5.3:72515027-72515046 | MS.gene47704:CDS | 50.0% | |
| TGCAATGGGAGCTCCTGATT+GGG | + | chr5.3:72517390-72517409 | MS.gene47704:CDS | 50.0% | |
| TTGCAATGGGAGCTCCTGAT+TGG | + | chr5.3:72517389-72517408 | MS.gene47704:CDS | 50.0% | |
| ! | CTTCGATTTTCCTGGCCAAG+TGG | + | chr5.3:72516335-72516354 | MS.gene47704:CDS | 50.0% |
| ! | TTGAAAGCGTGTTGGGCATC+CGG | + | chr5.3:72515547-72515566 | MS.gene47704:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 72515009 | 72517462 | 72515009 | ID=MS.gene47704 |
| chr5.3 | mRNA | 72515009 | 72517462 | 72515009 | ID=MS.gene47704.t1;Parent=MS.gene47704 |
| chr5.3 | exon | 72515009 | 72515145 | 72515009 | ID=MS.gene47704.t1.exon1;Parent=MS.gene47704.t1 |
| chr5.3 | CDS | 72515009 | 72515145 | 72515009 | ID=cds.MS.gene47704.t1;Parent=MS.gene47704.t1 |
| chr5.3 | exon | 72515253 | 72515332 | 72515253 | ID=MS.gene47704.t1.exon2;Parent=MS.gene47704.t1 |
| chr5.3 | CDS | 72515253 | 72515332 | 72515253 | ID=cds.MS.gene47704.t1;Parent=MS.gene47704.t1 |
| chr5.3 | exon | 72516107 | 72516181 | 72516107 | ID=MS.gene47704.t1.exon3;Parent=MS.gene47704.t1 |
| chr5.3 | CDS | 72516107 | 72516181 | 72516107 | ID=cds.MS.gene47704.t1;Parent=MS.gene47704.t1 |
| chr5.3 | exon | 72516322 | 72516425 | 72516322 | ID=MS.gene47704.t1.exon4;Parent=MS.gene47704.t1 |
| chr5.3 | CDS | 72516322 | 72516425 | 72516322 | ID=cds.MS.gene47704.t1;Parent=MS.gene47704.t1 |
| chr5.3 | exon | 72516507 | 72516663 | 72516507 | ID=MS.gene47704.t1.exon5;Parent=MS.gene47704.t1 |
| chr5.3 | CDS | 72516507 | 72516663 | 72516507 | ID=cds.MS.gene47704.t1;Parent=MS.gene47704.t1 |
| chr5.3 | exon | 72516769 | 72516856 | 72516769 | ID=MS.gene47704.t1.exon6;Parent=MS.gene47704.t1 |
| chr5.3 | CDS | 72516769 | 72516856 | 72516769 | ID=cds.MS.gene47704.t1;Parent=MS.gene47704.t1 |
| chr5.3 | exon | 72517137 | 72517209 | 72517137 | ID=MS.gene47704.t1.exon7;Parent=MS.gene47704.t1 |
| chr5.3 | CDS | 72517137 | 72517209 | 72517137 | ID=cds.MS.gene47704.t1;Parent=MS.gene47704.t1 |
| chr5.3 | exon | 72517292 | 72517462 | 72517292 | ID=MS.gene47704.t1.exon8;Parent=MS.gene47704.t1 |
| chr5.3 | CDS | 72517292 | 72517462 | 72517292 | ID=cds.MS.gene47704.t1;Parent=MS.gene47704.t1 |
| Gene Sequence |
| Protein sequence |
