Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48990.t1 | XP_013447253.1 | 79.4 | 572 | 16 | 1 | 1 | 572 | 1 | 470 | 2.60E-254 | 887.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48990.t1 | Q9C723 | 64.7 | 572 | 100 | 1 | 1 | 572 | 1 | 470 | 5.9e-215 | 748.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48990.t1 | A0A072U616 | 79.4 | 572 | 16 | 1 | 1 | 572 | 1 | 470 | 1.9e-254 | 887.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050320 | MS.gene48990 | -0.81202 | 5.23E-51 | -1.69E-46 |
MS.gene051033 | MS.gene48990 | 0.836991 | 6.76E-57 | -1.69E-46 |
MS.gene051903 | MS.gene48990 | -0.839076 | 1.97E-57 | -1.69E-46 |
MS.gene052309 | MS.gene48990 | 0.830351 | 3.08E-55 | -1.69E-46 |
MS.gene052358 | MS.gene48990 | 0.828379 | 9.29E-55 | -1.69E-46 |
MS.gene052818 | MS.gene48990 | 0.831321 | 1.78E-55 | -1.69E-46 |
MS.gene055591 | MS.gene48990 | 0.801342 | 9.42E-49 | -1.69E-46 |
MS.gene056830 | MS.gene48990 | 0.807076 | 6.03E-50 | -1.69E-46 |
MS.gene059872 | MS.gene48990 | 0.818511 | 1.89E-52 | -1.69E-46 |
MS.gene059898 | MS.gene48990 | -0.80508 | 1.59E-49 | -1.69E-46 |
MS.gene06118 | MS.gene48990 | -0.83021 | 3.34E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48990.t1 | MTR_8g099885 | 95.813 | 406 | 17 | 0 | 167 | 572 | 65 | 470 | 0.0 | 809 |
MS.gene48990.t1 | MTR_8g099885 | 96.407 | 167 | 6 | 0 | 1 | 167 | 1 | 167 | 2.20e-108 | 342 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48990.t1 | AT1G55090 | 78.818 | 406 | 86 | 0 | 167 | 572 | 65 | 470 | 0.0 | 693 |
MS.gene48990.t1 | AT1G55090 | 76.647 | 167 | 39 | 0 | 1 | 167 | 1 | 167 | 1.71e-89 | 291 |
Find 141 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACATCATTTAAAGAAAAT+TGG | 0.105248 | 4.3:-74294585 | None:intergenic |
CATGCTGAGCTTGCATTAAA+TGG | 0.156645 | 4.3:+74294155 | MS.gene48990:CDS |
TTGGACCTGGTTGCTGGTTA+TGG | 0.265089 | 4.3:+74295289 | MS.gene48990:CDS |
TGGACCTGGTTGCTGGTTAT+GGG | 0.275685 | 4.3:+74295290 | MS.gene48990:CDS |
GATGACGGCGCCGGCTTGTT+TGG | 0.281693 | 4.3:-74281170 | None:intergenic |
TCCTCTGTTGCTGCGATTGT+TGG | 0.297915 | 4.3:+74295375 | MS.gene48990:CDS |
CACCTTGATGTTAGCATTGA+TGG | 0.301302 | 4.3:+74296502 | MS.gene48990:CDS |
ACGCCTTTCTGTTCCTCTTA+AGG | 0.304612 | 4.3:+74294850 | MS.gene48990:CDS |
GTCGCTTTCCCGTAAGTGTT+TGG | 0.309910 | 4.3:-74296552 | None:intergenic |
GCTACAAGGTGACTGAATTA+TGG | 0.309991 | 4.3:+74296578 | MS.gene48990:CDS |
CACAGTATAAAATATTCTTT+TGG | 0.311819 | 4.3:-74296043 | None:intergenic |
TGTTCCAGTGTTGTGGTTAA+TGG | 0.316625 | 4.3:+74294541 | MS.gene48990:CDS |
GTCTTTGATTTGTAGAAGAT+TGG | 0.320727 | 4.3:-74281134 | None:intergenic |
GGAATGTTTGAAAGATATAT+TGG | 0.334800 | 4.3:+74281357 | MS.gene48990:CDS |
GGAATGTTTGAAAGATATAT+TGG | 0.334800 | 4.3:+74282743 | MS.gene48990:CDS |
TGGTAGGTTGCAAGCCTTAG+AGG | 0.338452 | 4.3:+74294731 | MS.gene48990:intron |
CATCAAGCTTTCTAAGTTGA+TGG | 0.339716 | 4.3:-74294211 | None:intergenic |
TTATTATTACGAATGGTTAA+TGG | 0.342917 | 4.3:-74281257 | None:intergenic |
GGCGCCGGCTTGTTTGGATT+TGG | 0.343154 | 4.3:-74281164 | None:intergenic |
TAACATTTGGACCTGGTTGC+TGG | 0.353484 | 4.3:+74295283 | MS.gene48990:CDS |
TCCTAATGTTTCCGAGGCAT+TGG | 0.369944 | 4.3:+74281588 | MS.gene48990:CDS |
GACAATAAACTAACCTTAAG+AGG | 0.371470 | 4.3:-74294863 | None:intergenic |
ATGCTGAGCTTGCATTAAAT+GGG | 0.371833 | 4.3:+74294156 | MS.gene48990:CDS |
GTCTTTGTTCCAAACACTTA+CGG | 0.376178 | 4.3:+74296543 | MS.gene48990:CDS |
ATCATTTGCAAGCCACATCT+TGG | 0.378781 | 4.3:-74282880 | None:intergenic |
TCTTTGTTCCAAACACTTAC+GGG | 0.380642 | 4.3:+74296544 | MS.gene48990:CDS |
CTCTCAGAACCTTTGATAAT+AGG | 0.381396 | 4.3:-74281421 | None:intergenic |
CTCTCAGAACCTTTGATAAT+AGG | 0.381396 | 4.3:-74282807 | None:intergenic |
GTGGTCTTCACAGCCATAAC+CGG | 0.383872 | 4.3:-74281218 | None:intergenic |
AACATCATTTAAAGAAAATT+GGG | 0.390775 | 4.3:-74294584 | None:intergenic |
TTACGAAGAAGTGGAGCATC+TGG | 0.398300 | 4.3:+74295318 | MS.gene48990:CDS |
TTTCCTTCAGAAATTGCAAA+TGG | 0.399802 | 4.3:+74295940 | MS.gene48990:intron |
ATAACCGGGGATTTCGAGTT+CGG | 0.402614 | 4.3:-74281203 | None:intergenic |
AAAGGAAGACAAAGACTATA+TGG | 0.406257 | 4.3:-74294815 | None:intergenic |
TGTTTATGAGATTTGAAAAC+AGG | 0.407921 | 4.3:+74296064 | MS.gene48990:CDS |
AAGATATATTGGTTGGTGAT+TGG | 0.409668 | 4.3:+74281368 | MS.gene48990:CDS |
AAGATATATTGGTTGGTGAT+TGG | 0.409668 | 4.3:+74282754 | MS.gene48990:CDS |
CTTTACAACTTGCTTGCTCT+TGG | 0.410098 | 4.3:-74294769 | None:intergenic |
AGCTACTTAAAGATCCTCTA+AGG | 0.411025 | 4.3:-74294745 | None:intergenic |
AACTTCGATGGTTTACTGCT+TGG | 0.416004 | 4.3:+74281530 | MS.gene48990:CDS |
AACTTCGATGGTTTACTGCT+TGG | 0.416004 | 4.3:+74282916 | MS.gene48990:CDS |
AAGGTCGCGGGCCAAGGTAC+TGG | 0.418044 | 4.3:+74296459 | MS.gene48990:CDS |
CACGAGGAGAAAATAACATT+TGG | 0.420046 | 4.3:+74295270 | MS.gene48990:CDS |
TTTAAATGATGTTGAGGTTG+TGG | 0.424124 | 4.3:+74294594 | MS.gene48990:CDS |
GTCGTATCATAATAATCTTT+CGG | 0.425212 | 4.3:-74281471 | None:intergenic |
GTCGTATCATAATAATCTTT+CGG | 0.425212 | 4.3:-74282857 | None:intergenic |
AAGGTACTGGCAGAGGAAAT+TGG | 0.426238 | 4.3:+74296472 | MS.gene48990:CDS |
TCCTAATGTTTCCGAGGCAT+TGG | 0.428289 | 4.3:+74282974 | MS.gene48990:CDS |
ATCATTTGCAAGGCACGTCT+TGG | 0.435018 | 4.3:-74281494 | None:intergenic |
GAACTCGAAATCCCCGGTTA+TGG | 0.442277 | 4.3:+74281205 | MS.gene48990:CDS |
GATGGTGGTCGCCTTTACTA+TGG | 0.445130 | 4.3:+74294308 | MS.gene48990:CDS |
CCCAATGCCTCGGAAACATT+AGG | 0.451735 | 4.3:-74281589 | None:intergenic |
CCTAATGTTTCCGAGGCATT+GGG | 0.451754 | 4.3:+74281589 | MS.gene48990:CDS |
TTCCTTCAGAAATTGCAAAT+GGG | 0.460972 | 4.3:+74295941 | MS.gene48990:intron |
TAACCGGGGATTTCGAGTTC+GGG | 0.461618 | 4.3:-74281202 | None:intergenic |
CAATCTTAACCAATGGGCTA+TGG | 0.462534 | 4.3:+74281102 | MS.gene48990:CDS |
GATAACATAGTGTGCAGTAT+TGG | 0.463634 | 4.3:+74281394 | MS.gene48990:CDS |
GATAACATAGTGTGCAGTAT+TGG | 0.463634 | 4.3:+74282780 | MS.gene48990:CDS |
TTCTGAGAGATACAATTGTC+AGG | 0.465019 | 4.3:+74281435 | MS.gene48990:CDS |
TTCTGAGAGATACAATTGTC+AGG | 0.465019 | 4.3:+74282821 | MS.gene48990:CDS |
TCATTTGCAAGCCACATCTT+GGG | 0.476765 | 4.3:-74282879 | None:intergenic |
GCCAATGCCTCGGAAACATT+AGG | 0.480001 | 4.3:-74282975 | None:intergenic |
TCATTTGCAAGGCACGTCTT+GGG | 0.484119 | 4.3:-74281493 | None:intergenic |
GGCTTGTTTGGATTTGGAGA+TGG | 0.485111 | 4.3:-74281158 | None:intergenic |
AATGGTGATGTTGTTGCTCA+AGG | 0.499320 | 4.3:+74294559 | MS.gene48990:CDS |
TGGCAGAGGAAATTGGTTCA+TGG | 0.503133 | 4.3:+74296479 | MS.gene48990:CDS |
TATAATTATCATCATTTGCA+AGG | 0.504657 | 4.3:-74281504 | None:intergenic |
TACTTGCAATCTTAACCAAT+GGG | 0.505809 | 4.3:+74281096 | MS.gene48990:CDS |
TTTCTGCTCCCTCTTTCTGG+TGG | 0.506355 | 4.3:+74295342 | MS.gene48990:CDS |
GCCGGCGCCGTCATCCGTCT+TGG | 0.507687 | 4.3:+74281178 | MS.gene48990:CDS |
AATCACGATGAGGCTCTTGA+AGG | 0.512546 | 4.3:+74281069 | None:intergenic |
CGGATCGGAAACTATAAAGA+TGG | 0.517059 | 4.3:+74295991 | MS.gene48990:CDS |
ACTAACCTTTCACAACCATC+TGG | 0.517089 | 4.3:-74295407 | None:intergenic |
AATGACAAGGTCGCGGGCCA+AGG | 0.519995 | 4.3:+74296453 | MS.gene48990:CDS |
GAAGTTGAAAATCATAAAGT+TGG | 0.522375 | 4.3:-74281564 | None:intergenic |
GCGGGCCAAGGTACTGGCAG+AGG | 0.522383 | 4.3:+74296465 | MS.gene48990:CDS |
GGCGACCACCATCACAGCCT+TGG | 0.524751 | 4.3:-74294298 | None:intergenic |
GTTTACTGCTTGGAAACAAA+GGG | 0.526848 | 4.3:+74281540 | MS.gene48990:CDS |
GTTTACTGCTTGGAAACAAA+GGG | 0.526848 | 4.3:+74282926 | MS.gene48990:CDS |
TCCTTCAGAAATTGCAAATG+GGG | 0.529905 | 4.3:+74295942 | MS.gene48990:intron |
ACCAAGACGGATGACGGCGC+CGG | 0.530775 | 4.3:-74281179 | None:intergenic |
CTGTCTGCTCCACCAGAAAG+AGG | 0.531787 | 4.3:-74295351 | None:intergenic |
TTCGGAAATGACAAGGTCGC+GGG | 0.534794 | 4.3:+74296447 | MS.gene48990:CDS |
TGGTCTTCACAGCCATAACC+GGG | 0.535392 | 4.3:-74281217 | None:intergenic |
TTAACAAAACCATAACCAAA+AGG | 0.535794 | 4.3:-74281625 | None:intergenic |
TTAACAAAACCATAACCAAA+AGG | 0.535794 | 4.3:-74283011 | None:intergenic |
CTACTTGCAATCTTAACCAA+TGG | 0.542643 | 4.3:+74281095 | MS.gene48990:CDS |
AATTTCCTCTGCCAGTACCT+TGG | 0.542921 | 4.3:-74296470 | None:intergenic |
ATTGGAATGCCTATTATCAA+AGG | 0.545628 | 4.3:+74281412 | MS.gene48990:CDS |
ATTGGAATGCCTATTATCAA+AGG | 0.545628 | 4.3:+74282798 | MS.gene48990:CDS |
AATCGAATTCCATAGCCCAT+TGG | 0.548373 | 4.3:-74281111 | None:intergenic |
GGTTTACTGCTTGGAAACAA+AGG | 0.548451 | 4.3:+74281539 | MS.gene48990:CDS |
GGTTTACTGCTTGGAAACAA+AGG | 0.548451 | 4.3:+74282925 | MS.gene48990:CDS |
CTCCATCAATGCTAACATCA+AGG | 0.548950 | 4.3:-74296504 | None:intergenic |
AAGTTAAAGCTGATGCAATA+CGG | 0.551421 | 4.3:+74295971 | MS.gene48990:CDS |
TGGGACTATTTACGAAGAAG+TGG | 0.556255 | 4.3:+74295309 | MS.gene48990:CDS |
GGGAAAGCGACCACGCTACA+AGG | 0.558835 | 4.3:+74296564 | MS.gene48990:CDS |
GAAGTTGAAAATCATCAAGT+TGG | 0.562415 | 4.3:-74282950 | None:intergenic |
AGTAATCACCAAGGCTGTGA+TGG | 0.563160 | 4.3:+74294290 | MS.gene48990:CDS |
ATCTCCAAATCCAAACAAGC+CGG | 0.565116 | 4.3:+74281160 | MS.gene48990:CDS |
ATAATTATAGAGAACTTCGA+TGG | 0.573265 | 4.3:+74281518 | MS.gene48990:CDS |
GTAATTATAGAGAACTTCGA+TGG | 0.573265 | 4.3:+74282904 | MS.gene48990:CDS |
TTCGGGACCAAGACGGATGA+CGG | 0.577192 | 4.3:-74281185 | None:intergenic |
GTTCGGAAATGACAAGGTCG+CGG | 0.579749 | 4.3:+74296446 | MS.gene48990:intron |
ATCACCATTAACCACAACAC+TGG | 0.583409 | 4.3:-74294545 | None:intergenic |
TGTTTGAAAGATATATTGGT+TGG | 0.589747 | 4.3:+74281361 | MS.gene48990:CDS |
TGTTTGAAAGATATATTGGT+TGG | 0.589747 | 4.3:+74282747 | MS.gene48990:CDS |
AAGATGTGGCTTGCAAATGA+TGG | 0.599672 | 4.3:+74282882 | MS.gene48990:CDS |
TTTCGAGTTCGGGACCAAGA+CGG | 0.601203 | 4.3:-74281192 | None:intergenic |
CTATATGGTACATCTACTGA+AGG | 0.601918 | 4.3:-74294800 | None:intergenic |
TAATGCAAGCTCAGCATGAG+GGG | 0.602155 | 4.3:-74294150 | None:intergenic |
ACTTCCTCCTAATGTTTCCG+AGG | 0.602942 | 4.3:+74281582 | MS.gene48990:CDS |
ACTTCCTCCTAATGTTTCCG+AGG | 0.602942 | 4.3:+74282968 | MS.gene48990:CDS |
TGGTGTCGAGTTCTAAGAAG+TGG | 0.603974 | 4.3:-74281237 | None:intergenic |
AGATGGATGTTCCAGTGTTG+TGG | 0.609611 | 4.3:+74294534 | MS.gene48990:intron |
TGTCTGCTCCACCAGAAAGA+GGG | 0.609748 | 4.3:-74295350 | None:intergenic |
TTTAATGCAAGCTCAGCATG+AGG | 0.609788 | 4.3:-74294152 | None:intergenic |
TAGTCCCATAACCAGCAACC+AGG | 0.612522 | 4.3:-74295294 | None:intergenic |
AAAGCTGATGCAATACGGAT+CGG | 0.616299 | 4.3:+74295976 | MS.gene48990:CDS |
TGTTGGATGCATGTGCCAGA+TGG | 0.616886 | 4.3:+74295392 | MS.gene48990:CDS |
TTATGATACGACCCAAGATG+TGG | 0.618671 | 4.3:+74282868 | MS.gene48990:CDS |
TAACCTTAAGAGGAACAGAA+AGG | 0.625303 | 4.3:-74294853 | None:intergenic |
TTAATGCAAGCTCAGCATGA+GGG | 0.627773 | 4.3:-74294151 | None:intergenic |
AATCACCAAGGCTGTGATGG+TGG | 0.627776 | 4.3:+74294293 | MS.gene48990:CDS |
ATAGGTGCTACTCATACTCG+TGG | 0.632910 | 4.3:+74294251 | MS.gene48990:CDS |
CATTCTTAGAGCTATTGCAG+TGG | 0.633093 | 4.3:+74294097 | MS.gene48990:intron |
TGCTGAGCTTGCATTAAATG+GGG | 0.634241 | 4.3:+74294157 | MS.gene48990:CDS |
GGTCCCGAACTCGAAATCCC+CGG | 0.647848 | 4.3:+74281199 | MS.gene48990:CDS |
AATGCCTCGGAAACATTAGG+AGG | 0.652440 | 4.3:-74281586 | None:intergenic |
AATGCCTCGGAAACATTAGG+AGG | 0.652440 | 4.3:-74282972 | None:intergenic |
AATTCAGTCACCTTGTAGCG+TGG | 0.653429 | 4.3:-74296574 | None:intergenic |
GAGAAAATAACATTTGGACC+TGG | 0.658633 | 4.3:+74295276 | MS.gene48990:CDS |
AATGCAAGCTCAGCATGAGG+GGG | 0.672892 | 4.3:-74294149 | None:intergenic |
GTTGCAGTTCGGAAATGACA+AGG | 0.688965 | 4.3:+74296440 | MS.gene48990:intron |
ATGTGCCAGATGGTTGTGAA+AGG | 0.706919 | 4.3:+74295402 | MS.gene48990:CDS |
TCCAACAATCGCAGCAACAG+AGG | 0.708792 | 4.3:-74295376 | None:intergenic |
GGTGCTACTCATACTCGTGG+AGG | 0.717392 | 4.3:+74294254 | MS.gene48990:CDS |
TGCTCAGATAGATCTTGACG+TGG | 0.724663 | 4.3:+74294618 | MS.gene48990:CDS |
TATATGTACAGTAATCACCA+AGG | 0.733738 | 4.3:+74294281 | MS.gene48990:CDS |
GGTCTTCACAGCCATAACCG+GGG | 0.753301 | 4.3:-74281216 | None:intergenic |
GATAAAATATCACTCTCACG+AGG | 0.767157 | 4.3:+74295254 | MS.gene48990:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 74281076 | 74296624 | 74281076 | ID=MS.gene48990 |
chr4.3 | mRNA | 74281076 | 74296624 | 74281076 | ID=MS.gene48990.t1;Parent=MS.gene48990 |
chr4.3 | exon | 74281076 | 74281269 | 74281076 | ID=MS.gene48990.t1.exon1;Parent=MS.gene48990.t1 |
chr4.3 | CDS | 74281076 | 74281269 | 74281076 | ID=cds.MS.gene48990.t1;Parent=MS.gene48990.t1 |
chr4.3 | exon | 74281354 | 74281659 | 74281354 | ID=MS.gene48990.t1.exon2;Parent=MS.gene48990.t1 |
chr4.3 | CDS | 74281354 | 74281659 | 74281354 | ID=cds.MS.gene48990.t1;Parent=MS.gene48990.t1 |
chr4.3 | exon | 74282740 | 74283045 | 74282740 | ID=MS.gene48990.t1.exon3;Parent=MS.gene48990.t1 |
chr4.3 | CDS | 74282740 | 74283045 | 74282740 | ID=cds.MS.gene48990.t1;Parent=MS.gene48990.t1 |
chr4.3 | exon | 74294106 | 74294329 | 74294106 | ID=MS.gene48990.t1.exon4;Parent=MS.gene48990.t1 |
chr4.3 | CDS | 74294106 | 74294329 | 74294106 | ID=cds.MS.gene48990.t1;Parent=MS.gene48990.t1 |
chr4.3 | exon | 74294536 | 74294639 | 74294536 | ID=MS.gene48990.t1.exon5;Parent=MS.gene48990.t1 |
chr4.3 | CDS | 74294536 | 74294639 | 74294536 | ID=cds.MS.gene48990.t1;Parent=MS.gene48990.t1 |
chr4.3 | exon | 74294737 | 74294871 | 74294737 | ID=MS.gene48990.t1.exon6;Parent=MS.gene48990.t1 |
chr4.3 | CDS | 74294737 | 74294871 | 74294737 | ID=cds.MS.gene48990.t1;Parent=MS.gene48990.t1 |
chr4.3 | exon | 74295255 | 74295423 | 74295255 | ID=MS.gene48990.t1.exon7;Parent=MS.gene48990.t1 |
chr4.3 | CDS | 74295255 | 74295423 | 74295255 | ID=cds.MS.gene48990.t1;Parent=MS.gene48990.t1 |
chr4.3 | exon | 74295950 | 74296085 | 74295950 | ID=MS.gene48990.t1.exon8;Parent=MS.gene48990.t1 |
chr4.3 | CDS | 74295950 | 74296085 | 74295950 | ID=cds.MS.gene48990.t1;Parent=MS.gene48990.t1 |
chr4.3 | exon | 74296447 | 74296624 | 74296447 | ID=MS.gene48990.t1.exon9;Parent=MS.gene48990.t1 |
chr4.3 | CDS | 74296447 | 74296624 | 74296447 | ID=cds.MS.gene48990.t1;Parent=MS.gene48990.t1 |
Gene Sequence |
Protein sequence |