Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055591.t1 | RHN61069.1 | 98.4 | 187 | 3 | 0 | 1 | 187 | 1 | 187 | 2.20E-90 | 341.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055591.t1 | A2YEZ6 | 62.0 | 187 | 55 | 4 | 1 | 187 | 1 | 171 | 5.0e-59 | 228.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055591.t1 | A0A396I620 | 98.4 | 187 | 3 | 0 | 1 | 187 | 1 | 187 | 1.6e-90 | 341.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050320 | MS.gene055591 | -0.801643 | 8.17E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene055591 | -0.815451 | 9.18E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene055591 | -0.807825 | 4.18E-50 | -1.69E-46 |
| MS.gene051748 | MS.gene055591 | -0.801199 | 1.01E-48 | -1.69E-46 |
| MS.gene051903 | MS.gene055591 | -0.827268 | 1.72E-54 | -1.69E-46 |
| MS.gene052048 | MS.gene055591 | 0.82087 | 5.46E-53 | -1.69E-46 |
| MS.gene052302 | MS.gene055591 | -0.824097 | 9.71E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene055591 | -0.806423 | 8.29E-50 | -1.69E-46 |
| MS.gene053109 | MS.gene055591 | -0.807927 | 3.98E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene055591 | -0.802962 | 4.37E-49 | -1.69E-46 |
| MS.gene055591 | MS.gene056069 | 0.818487 | 1.91E-52 | -1.69E-46 |
| MS.gene055591 | MS.gene057094 | -0.813939 | 1.99E-51 | -1.69E-46 |
| MS.gene055591 | MS.gene058182 | -0.800173 | 1.63E-48 | -1.69E-46 |
| MS.gene055591 | MS.gene058906 | -0.833251 | 5.94E-56 | -1.69E-46 |
| MS.gene055591 | MS.gene059171 | -0.802539 | 5.35E-49 | -1.69E-46 |
| MS.gene055591 | MS.gene06001 | -0.839611 | 1.43E-57 | -1.69E-46 |
| MS.gene055591 | MS.gene062352 | -0.814878 | 1.23E-51 | -1.69E-46 |
| MS.gene055591 | MS.gene066035 | -0.800484 | 1.41E-48 | -1.69E-46 |
| MS.gene055591 | MS.gene06989 | -0.822065 | 2.89E-53 | -1.69E-46 |
| MS.gene055591 | MS.gene070222 | -0.810222 | 1.28E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene07089 | -0.800289 | 1.55E-48 | -1.69E-46 |
| MS.gene055591 | MS.gene07217 | -0.814852 | 1.25E-51 | -1.69E-46 |
| MS.gene055591 | MS.gene07222 | -0.832706 | 8.11E-56 | -1.69E-46 |
| MS.gene055591 | MS.gene073827 | -0.81305 | 3.11E-51 | -1.69E-46 |
| MS.gene055591 | MS.gene074465 | -0.811493 | 6.81E-51 | -1.69E-46 |
| MS.gene055591 | MS.gene074584 | -0.816266 | 6.04E-52 | -1.69E-46 |
| MS.gene055591 | MS.gene07552 | -0.812292 | 4.56E-51 | -1.69E-46 |
| MS.gene055591 | MS.gene09032 | -0.810095 | 1.37E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene20740 | -0.829966 | 3.83E-55 | -1.69E-46 |
| MS.gene055591 | MS.gene21089 | -0.808725 | 2.69E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene22314 | -0.807878 | 4.08E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene22968 | -0.819536 | 1.10E-52 | -1.69E-46 |
| MS.gene055591 | MS.gene23059 | -0.827784 | 1.29E-54 | -1.69E-46 |
| MS.gene055591 | MS.gene24483 | -0.807026 | 6.18E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene25077 | -0.832611 | 8.57E-56 | -1.69E-46 |
| MS.gene055591 | MS.gene27991 | -0.834884 | 2.32E-56 | -1.69E-46 |
| MS.gene055591 | MS.gene28159 | -0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene055591 | MS.gene29053 | 0.831355 | 1.75E-55 | -1.69E-46 |
| MS.gene055591 | MS.gene30158 | 0.806051 | 9.92E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene33907 | -0.836104 | 1.14E-56 | -1.69E-46 |
| MS.gene055591 | MS.gene35147 | -0.836453 | 9.28E-57 | -1.69E-46 |
| MS.gene055591 | MS.gene35214 | -0.812626 | 3.86E-51 | -1.69E-46 |
| MS.gene055591 | MS.gene36392 | -0.820354 | 7.17E-53 | -1.69E-46 |
| MS.gene055591 | MS.gene36483 | 0.822617 | 2.15E-53 | -1.69E-46 |
| MS.gene055591 | MS.gene44135 | 0.834303 | 3.24E-56 | -1.69E-46 |
| MS.gene055591 | MS.gene45578 | -0.814019 | 1.91E-51 | -1.69E-46 |
| MS.gene055591 | MS.gene47955 | -0.817187 | 3.76E-52 | -1.69E-46 |
| MS.gene055591 | MS.gene48990 | 0.801342 | 9.42E-49 | -1.69E-46 |
| MS.gene055591 | MS.gene51658 | -0.818644 | 1.76E-52 | -1.69E-46 |
| MS.gene055591 | MS.gene54547 | -0.801858 | 7.38E-49 | -1.69E-46 |
| MS.gene055591 | MS.gene55732 | -0.82892 | 6.87E-55 | -1.69E-46 |
| MS.gene055591 | MS.gene63902 | -0.802819 | 4.68E-49 | -1.69E-46 |
| MS.gene055591 | MS.gene64920 | -0.808419 | 3.13E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene66089 | -0.810165 | 1.32E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene66468 | -0.809288 | 2.04E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene67884 | -0.801711 | 7.91E-49 | -1.69E-46 |
| MS.gene055591 | MS.gene68810 | -0.802207 | 6.26E-49 | -1.69E-46 |
| MS.gene055591 | MS.gene69262 | -0.808983 | 2.37E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene70989 | 0.837305 | 5.62E-57 | -1.69E-46 |
| MS.gene055591 | MS.gene74854 | -0.816298 | 5.94E-52 | -1.69E-46 |
| MS.gene055591 | MS.gene75477 | -0.802828 | 4.66E-49 | -1.69E-46 |
| MS.gene055591 | MS.gene83217 | -0.80588 | 1.08E-49 | -1.69E-46 |
| MS.gene055591 | MS.gene88087 | -0.827561 | 1.46E-54 | -1.69E-46 |
| MS.gene055591 | MS.gene88371 | -0.80915 | 2.18E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene88427 | -0.809691 | 1.67E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene88645 | -0.811401 | 7.13E-51 | -1.69E-46 |
| MS.gene055591 | MS.gene89721 | -0.820768 | 5.76E-53 | -1.69E-46 |
| MS.gene055591 | MS.gene92572 | -0.815609 | 8.47E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055591 | MS.gene24724 | PPI |
| MS.gene050335 | MS.gene055591 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055591.t1 | MTR_2g098160 | 74.332 | 187 | 33 | 2 | 1 | 187 | 1 | 172 | 3.43e-97 | 279 |
| MS.gene055591.t1 | MTR_4g065570 | 85.350 | 157 | 3 | 1 | 31 | 187 | 1 | 137 | 2.01e-92 | 266 |
| MS.gene055591.t1 | MTR_7g092400 | 57.297 | 185 | 63 | 3 | 3 | 187 | 92 | 260 | 2.34e-70 | 214 |
| MS.gene055591.t1 | MTR_0249s0070 | 55.676 | 185 | 63 | 3 | 3 | 187 | 4 | 169 | 2.61e-68 | 206 |
| MS.gene055591.t1 | MTR_0249s0070 | 55.676 | 185 | 63 | 3 | 3 | 187 | 12 | 177 | 3.10e-68 | 206 |
| MS.gene055591.t1 | MTR_7g104320 | 40.217 | 184 | 92 | 5 | 4 | 187 | 3 | 168 | 9.61e-40 | 133 |
| MS.gene055591.t1 | MTR_4g053440 | 39.674 | 184 | 95 | 4 | 4 | 187 | 3 | 170 | 1.71e-39 | 132 |
| MS.gene055591.t1 | MTR_2g086190 | 39.884 | 173 | 72 | 4 | 15 | 187 | 10 | 150 | 5.84e-38 | 128 |
| MS.gene055591.t1 | MTR_1g060380 | 42.703 | 185 | 74 | 6 | 4 | 187 | 3 | 156 | 8.66e-35 | 120 |
| MS.gene055591.t1 | MTR_8g036980 | 65.574 | 61 | 21 | 0 | 127 | 187 | 91 | 151 | 1.64e-26 | 99.0 |
| MS.gene055591.t1 | MTR_3g028010 | 59.016 | 61 | 25 | 0 | 127 | 187 | 103 | 163 | 1.66e-23 | 91.7 |
| MS.gene055591.t1 | MTR_1g100773 | 30.814 | 172 | 82 | 5 | 15 | 185 | 3 | 138 | 1.09e-22 | 89.0 |
| MS.gene055591.t1 | MTR_7g114920 | 30.000 | 170 | 77 | 4 | 15 | 184 | 3 | 130 | 3.90e-22 | 87.4 |
| MS.gene055591.t1 | MTR_3g025570 | 72.727 | 44 | 12 | 0 | 122 | 165 | 4 | 47 | 2.80e-19 | 79.3 |
| MS.gene055591.t1 | MTR_2g054650 | 30.409 | 171 | 70 | 4 | 15 | 185 | 4 | 125 | 1.85e-17 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055591.t1 | AT1G51200 | 59.358 | 187 | 62 | 4 | 1 | 187 | 1 | 173 | 5.40e-64 | 195 |
| MS.gene055591.t1 | AT1G51200 | 59.358 | 187 | 62 | 4 | 1 | 187 | 1 | 173 | 5.40e-64 | 195 |
| MS.gene055591.t1 | AT1G51200 | 59.358 | 187 | 62 | 4 | 1 | 187 | 1 | 173 | 5.40e-64 | 195 |
| MS.gene055591.t1 | AT1G51200 | 59.358 | 187 | 62 | 4 | 1 | 187 | 1 | 173 | 5.40e-64 | 195 |
| MS.gene055591.t1 | AT2G36320 | 41.573 | 178 | 76 | 3 | 12 | 187 | 10 | 161 | 1.65e-42 | 140 |
| MS.gene055591.t1 | AT2G27580 | 39.306 | 173 | 86 | 3 | 15 | 187 | 10 | 163 | 3.20e-39 | 132 |
| MS.gene055591.t1 | AT2G27580 | 39.306 | 173 | 86 | 3 | 15 | 187 | 10 | 163 | 3.20e-39 | 132 |
| MS.gene055591.t1 | AT4G12040 | 36.872 | 179 | 96 | 3 | 11 | 187 | 12 | 175 | 4.48e-39 | 132 |
| MS.gene055591.t1 | AT4G12040 | 36.872 | 179 | 96 | 3 | 11 | 187 | 12 | 175 | 4.48e-39 | 132 |
| MS.gene055591.t1 | AT1G12440 | 38.636 | 176 | 88 | 1 | 12 | 187 | 13 | 168 | 3.28e-38 | 129 |
| MS.gene055591.t1 | AT1G12440 | 38.636 | 176 | 88 | 1 | 12 | 187 | 13 | 168 | 3.28e-38 | 129 |
| MS.gene055591.t1 | AT1G12440 | 38.636 | 176 | 88 | 1 | 12 | 187 | 13 | 168 | 3.28e-38 | 129 |
| MS.gene055591.t1 | AT4G22820 | 36.994 | 173 | 94 | 2 | 15 | 187 | 19 | 176 | 4.98e-37 | 126 |
| MS.gene055591.t1 | AT4G22820 | 36.994 | 173 | 94 | 2 | 15 | 187 | 19 | 176 | 4.98e-37 | 126 |
| MS.gene055591.t1 | AT3G52800 | 41.489 | 188 | 86 | 5 | 4 | 187 | 3 | 170 | 9.72e-36 | 123 |
| MS.gene055591.t1 | AT3G52800 | 41.489 | 188 | 86 | 5 | 4 | 187 | 3 | 170 | 9.72e-36 | 123 |
| MS.gene055591.t1 | AT3G12630 | 37.349 | 166 | 67 | 5 | 23 | 187 | 31 | 160 | 4.38e-28 | 103 |
| MS.gene055591.t1 | AT4G14225 | 32.948 | 173 | 64 | 2 | 15 | 187 | 5 | 125 | 8.66e-26 | 96.3 |
| MS.gene055591.t1 | AT4G25380 | 28.409 | 176 | 65 | 4 | 18 | 187 | 10 | 130 | 3.56e-22 | 87.4 |
Find 50 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGCTTAGAGATAGTTTC+AGG | 0.302295 | 4.3:+38653299 | None:intergenic |
| AGCTTCTCAGCCTTGACAAC+CGG | 0.320370 | 4.3:+38653068 | None:intergenic |
| TTCGGACCATCCTTCGGCTT+TGG | 0.323240 | 4.3:+38653242 | None:intergenic |
| ATGCACAATATAGGACCTTC+AGG | 0.357857 | 4.3:+38653563 | None:intergenic |
| GTTTCAGCATCATGTCTTTG+TGG | 0.367335 | 4.3:+38653486 | None:intergenic |
| CTTGACAACCGGGTTTGCTT+TGG | 0.380130 | 4.3:+38653079 | None:intergenic |
| TTGCAGTTGCTGCAACGTTT+CGG | 0.398329 | 4.3:+38653224 | None:intergenic |
| TCCCTTGGAAATATTATGAA+TGG | 0.415286 | 4.3:-38653437 | MS.gene055591:CDS |
| AGTTTCAGGTTCCACAGAAA+TGG | 0.422622 | 4.3:+38653313 | None:intergenic |
| CAAAGACATGATGCTGAAAC+AGG | 0.424095 | 4.3:-38653483 | MS.gene055591:CDS |
| AATAAGCGAGTTGGTTTGAC+AGG | 0.426782 | 4.3:-38653203 | MS.gene055591:CDS |
| CAACGTTTCGGACCATCCTT+CGG | 0.445047 | 4.3:+38653236 | None:intergenic |
| AACCGGGTTTGCTTTGGCTA+TGG | 0.447808 | 4.3:+38653085 | None:intergenic |
| CAGTTGTTGATGCACAATAT+AGG | 0.453708 | 4.3:+38653554 | None:intergenic |
| TTAGGTTCCACGGAAATGGC+TGG | 0.467021 | 4.3:+38653359 | None:intergenic |
| TCAGGTTCCACAGAAATGGC+TGG | 0.480113 | 4.3:+38653317 | None:intergenic |
| GCACTTAGAGCACATGTTCA+TGG | 0.487125 | 4.3:+38653508 | None:intergenic |
| CCCTTGGAAATATTATGAAT+GGG | 0.495769 | 4.3:-38653436 | MS.gene055591:CDS |
| CAGAAGTGCGGTAATCGAAC+GGG | 0.502252 | 4.3:+38653117 | None:intergenic |
| GCTTCTCAGCCTTGACAACC+GGG | 0.508433 | 4.3:+38653069 | None:intergenic |
| AAGGGATGATGCTGCAAGAT+GGG | 0.510002 | 4.3:+38653454 | None:intergenic |
| ACGCTGGCAGCAGTAACAAC+AGG | 0.516439 | 4.3:+38653389 | None:intergenic |
| CCCATTCATAATATTTCCAA+GGG | 0.520390 | 4.3:+38653436 | None:intergenic |
| ACCCATTCATAATATTTCCA+AGG | 0.526039 | 4.3:+38653435 | None:intergenic |
| CAAGGGATGATGCTGCAAGA+TGG | 0.532070 | 4.3:+38653453 | None:intergenic |
| AGCAACTGCAATAAGCGAGT+TGG | 0.543723 | 4.3:-38653212 | MS.gene055591:CDS |
| AGCGATGTACAGCACAGAAA+AGG | 0.543830 | 4.3:+38653159 | None:intergenic |
| CAGGTTCCACAGAAATGGCT+GGG | 0.544362 | 4.3:+38653318 | None:intergenic |
| CATCTTGCAGCATCATCCCT+TGG | 0.544464 | 4.3:-38653452 | MS.gene055591:CDS |
| CAAAGCAAACCCGGTTGTCA+AGG | 0.546068 | 4.3:-38653078 | MS.gene055591:CDS |
| TGCCATAGCCAAAGCAAACC+CGG | 0.547092 | 4.3:-38653087 | MS.gene055591:CDS |
| TTTATTTGGCTCAGGTTCAG+AGG | 0.556901 | 4.3:-38653276 | MS.gene055591:CDS |
| GCAGAAGTGCGGTAATCGAA+CGG | 0.558885 | 4.3:+38653116 | None:intergenic |
| TAGGTTCCACGGAAATGGCT+GGG | 0.559679 | 4.3:+38653360 | None:intergenic |
| TGCACAATATAGGACCTTCA+GGG | 0.559940 | 4.3:+38653564 | None:intergenic |
| CATGATGCTGAAACAGGAGC+AGG | 0.593551 | 4.3:-38653477 | MS.gene055591:CDS |
| ACAGGGTTTAATTGTCGATG+TGG | 0.597602 | 4.3:-38653185 | MS.gene055591:CDS |
| GGTGATCCAAAGCCGAAGGA+TGG | 0.601061 | 4.3:-38653248 | MS.gene055591:CDS |
| CGATATCCCAGCCATTTCTG+TGG | 0.616564 | 4.3:-38653324 | MS.gene055591:CDS |
| AATGGCTGGGATATCGACAC+TGG | 0.621172 | 4.3:+38653331 | None:intergenic |
| TGGCATCTCGTGCAGAAGTG+CGG | 0.628982 | 4.3:+38653105 | None:intergenic |
| GAGTGGTGATCCAAAGCCGA+AGG | 0.630939 | 4.3:-38653252 | MS.gene055591:CDS |
| GGATATCCCAGCCATTTCCG+TGG | 0.638474 | 4.3:-38653366 | MS.gene055591:CDS |
| GCACAATATAGGACCTTCAG+GGG | 0.644318 | 4.3:+38653565 | None:intergenic |
| ATAAGCGAGTTGGTTTGACA+GGG | 0.651214 | 4.3:-38653202 | MS.gene055591:CDS |
| AATGGCTGGGATATCCACGC+TGG | 0.652769 | 4.3:+38653373 | None:intergenic |
| GGCTCAGGTTCAGAGGAGAG+TGG | 0.659270 | 4.3:-38653269 | MS.gene055591:CDS |
| TGTTGTTACTGCTGCCAGCG+TGG | 0.668169 | 4.3:-38653387 | MS.gene055591:CDS |
| ATATTGTGCATCAACAACTG+TGG | 0.675543 | 4.3:-38653551 | MS.gene055591:CDS |
| CACAATATAGGACCTTCAGG+GGG | 0.733275 | 4.3:+38653566 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTCTAAGCCTTTTTTATT+TGG | - | chr4.3:38653361-38653380 | MS.gene055591:CDS | 25.0% |
| ACCCATTCATAATATTTCCA+AGG | + | chr4.3:38653219-38653238 | None:intergenic | 30.0% | |
| CCCATTCATAATATTTCCAA+GGG | + | chr4.3:38653218-38653237 | None:intergenic | 30.0% | |
| CCCTTGGAAATATTATGAAT+GGG | - | chr4.3:38653215-38653234 | MS.gene055591:CDS | 30.0% | |
| TCCCTTGGAAATATTATGAA+TGG | - | chr4.3:38653214-38653233 | MS.gene055591:CDS | 30.0% | |
| ! | ATCAACAACTGTGGATTTTT+CGG | - | chr4.3:38653109-38653128 | MS.gene055591:CDS | 30.0% |
| AAAGGCTTAGAGATAGTTTC+AGG | + | chr4.3:38653355-38653374 | None:intergenic | 35.0% | |
| ATATTGTGCATCAACAACTG+TGG | - | chr4.3:38653100-38653119 | MS.gene055591:CDS | 35.0% | |
| CAGTTGTTGATGCACAATAT+AGG | + | chr4.3:38653100-38653119 | None:intergenic | 35.0% | |
| GAACCTGAGCCAAATAAAAA+AGG | + | chr4.3:38653373-38653392 | None:intergenic | 35.0% | |
| !!! | AAGCCTTTTTTATTTGGCTC+AGG | - | chr4.3:38653367-38653386 | MS.gene055591:CDS | 35.0% |
| ACAGGGTTTAATTGTCGATG+TGG | - | chr4.3:38653466-38653485 | MS.gene055591:CDS | 40.0% | |
| ATGCACAATATAGGACCTTC+AGG | + | chr4.3:38653091-38653110 | None:intergenic | 40.0% | |
| CAAAGACATGATGCTGAAAC+AGG | - | chr4.3:38653168-38653187 | MS.gene055591:CDS | 40.0% | |
| GTTTCAGCATCATGTCTTTG+TGG | + | chr4.3:38653168-38653187 | None:intergenic | 40.0% | |
| TGCACAATATAGGACCTTCA+GGG | + | chr4.3:38653090-38653109 | None:intergenic | 40.0% | |
| ! | ATATCGACACTGGCAGTTTT+AGG | + | chr4.3:38653313-38653332 | None:intergenic | 40.0% |
| ! | TTTATTTGGCTCAGGTTCAG+AGG | - | chr4.3:38653375-38653394 | MS.gene055591:CDS | 40.0% |
| !! | AATAAGCGAGTTGGTTTGAC+AGG | - | chr4.3:38653448-38653467 | MS.gene055591:CDS | 40.0% |
| !! | AGTTTCAGGTTCCACAGAAA+TGG | + | chr4.3:38653341-38653360 | None:intergenic | 40.0% |
| !! | ATAAGCGAGTTGGTTTGACA+GGG | - | chr4.3:38653449-38653468 | MS.gene055591:CDS | 40.0% |
| !!! | AGTTTTAGGTTCCACGGAAA+TGG | + | chr4.3:38653299-38653318 | None:intergenic | 40.0% |
| AAGGGATGATGCTGCAAGAT+GGG | + | chr4.3:38653200-38653219 | None:intergenic | 45.0% | |
| AGCAACTGCAATAAGCGAGT+TGG | - | chr4.3:38653439-38653458 | MS.gene055591:CDS | 45.0% | |
| AGCGATGTACAGCACAGAAA+AGG | + | chr4.3:38653495-38653514 | None:intergenic | 45.0% | |
| CACAATATAGGACCTTCAGG+GGG | + | chr4.3:38653088-38653107 | None:intergenic | 45.0% | |
| GCACAATATAGGACCTTCAG+GGG | + | chr4.3:38653089-38653108 | None:intergenic | 45.0% | |
| GCACTTAGAGCACATGTTCA+TGG | + | chr4.3:38653146-38653165 | None:intergenic | 45.0% | |
| TTGCAGTTGCTGCAACGTTT+CGG | + | chr4.3:38653430-38653449 | None:intergenic | 45.0% | |
| !!! | ACTGGCAGTTTTAGGTTCCA+CGG | + | chr4.3:38653305-38653324 | None:intergenic | 45.0% |
| AATGGCTGGGATATCGACAC+TGG | + | chr4.3:38653323-38653342 | None:intergenic | 50.0% | |
| AGCTTCTCAGCCTTGACAAC+CGG | + | chr4.3:38653586-38653605 | None:intergenic | 50.0% | |
| CAAAGCAAACCCGGTTGTCA+AGG | - | chr4.3:38653573-38653592 | MS.gene055591:CDS | 50.0% | |
| CAACGTTTCGGACCATCCTT+CGG | + | chr4.3:38653418-38653437 | None:intergenic | 50.0% | |
| CAAGGGATGATGCTGCAAGA+TGG | + | chr4.3:38653201-38653220 | None:intergenic | 50.0% | |
| CAGGTTCCACAGAAATGGCT+GGG | + | chr4.3:38653336-38653355 | None:intergenic | 50.0% | |
| CATCTTGCAGCATCATCCCT+TGG | - | chr4.3:38653199-38653218 | MS.gene055591:CDS | 50.0% | |
| CATGATGCTGAAACAGGAGC+AGG | - | chr4.3:38653174-38653193 | MS.gene055591:CDS | 50.0% | |
| CGATATCCCAGCCATTTCTG+TGG | - | chr4.3:38653327-38653346 | MS.gene055591:CDS | 50.0% | |
| TAGGTTCCACGGAAATGGCT+GGG | + | chr4.3:38653294-38653313 | None:intergenic | 50.0% | |
| TCAGGTTCCACAGAAATGGC+TGG | + | chr4.3:38653337-38653356 | None:intergenic | 50.0% | |
| TGCCATAGCCAAAGCAAACC+CGG | - | chr4.3:38653564-38653583 | MS.gene055591:CDS | 50.0% | |
| TTAGGTTCCACGGAAATGGC+TGG | + | chr4.3:38653295-38653314 | None:intergenic | 50.0% | |
| ! | AACCGGGTTTGCTTTGGCTA+TGG | + | chr4.3:38653569-38653588 | None:intergenic | 50.0% |
| ! | CAGAAGTGCGGTAATCGAAC+GGG | + | chr4.3:38653537-38653556 | None:intergenic | 50.0% |
| ! | CTTGACAACCGGGTTTGCTT+TGG | + | chr4.3:38653575-38653594 | None:intergenic | 50.0% |
| ! | GCAGAAGTGCGGTAATCGAA+CGG | + | chr4.3:38653538-38653557 | None:intergenic | 50.0% |
| AATGGCTGGGATATCCACGC+TGG | + | chr4.3:38653281-38653300 | None:intergenic | 55.0% | |
| ACGCTGGCAGCAGTAACAAC+AGG | + | chr4.3:38653265-38653284 | None:intergenic | 55.0% | |
| GAATGTCAAGCTCCCCCTGA+AGG | - | chr4.3:38653073-38653092 | MS.gene055591:CDS | 55.0% | |
| GAGTGGTGATCCAAAGCCGA+AGG | - | chr4.3:38653399-38653418 | MS.gene055591:CDS | 55.0% | |
| GCTTCTCAGCCTTGACAACC+GGG | + | chr4.3:38653585-38653604 | None:intergenic | 55.0% | |
| GGATATCCCAGCCATTTCCG+TGG | - | chr4.3:38653285-38653304 | MS.gene055591:CDS | 55.0% | |
| GGTGATCCAAAGCCGAAGGA+TGG | - | chr4.3:38653403-38653422 | MS.gene055591:CDS | 55.0% | |
| TGGCATCTCGTGCAGAAGTG+CGG | + | chr4.3:38653549-38653568 | None:intergenic | 55.0% | |
| TGTTGTTACTGCTGCCAGCG+TGG | - | chr4.3:38653264-38653283 | MS.gene055591:CDS | 55.0% | |
| TTCGGACCATCCTTCGGCTT+TGG | + | chr4.3:38653412-38653431 | None:intergenic | 55.0% | |
| GGCTCAGGTTCAGAGGAGAG+TGG | - | chr4.3:38653382-38653401 | MS.gene055591:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 38653055 | 38653618 | 38653055 | ID=MS.gene055591 |
| chr4.3 | mRNA | 38653055 | 38653618 | 38653055 | ID=MS.gene055591.t1;Parent=MS.gene055591 |
| chr4.3 | exon | 38653055 | 38653618 | 38653055 | ID=MS.gene055591.t1.exon1;Parent=MS.gene055591.t1 |
| chr4.3 | CDS | 38653055 | 38653618 | 38653055 | ID=cds.MS.gene055591.t1;Parent=MS.gene055591.t1 |
| Gene Sequence |
| Protein sequence |
