AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49070.t1 MTR_1g100727 95.946 222 7 1 1 222 1 220 7.08e-156 431
MS.gene49070.t1 MTR_6g054890 67.660 235 59 4 3 222 2 234 7.37e-106 305
MS.gene49070.t1 MTR_6g027160 49.068 161 70 3 19 171 17 173 1.52e-46 152
MS.gene49070.t1 MTR_3g105860 54.639 97 44 0 75 171 2 98 4.66e-33 115
MS.gene49070.t1 MTR_3g081290 38.542 96 59 0 76 171 35 130 6.48e-17 77.0
MS.gene49070.t1 MTR_6g027060 53.333 60 28 0 110 169 27 86 1.36e-16 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49070.t1 AT3G48890 66.667 210 62 4 5 213 4 206 3.28e-91 268
MS.gene49070.t1 AT5G52240 61.161 224 77 4 3 222 2 219 6.14e-88 259
MS.gene49070.t1 AT5G52240 72.093 172 44 2 3 172 2 171 3.86e-86 253
MS.gene49070.t1 AT2G24940 50.515 97 48 0 75 171 2 98 1.61e-29 106
MS.gene49070.t1 AT4G14965 30.921 152 82 2 20 171 9 137 6.96e-17 77.0
MS.gene49070.t1 AT4G14965 39.759 83 50 0 76 158 42 124 1.36e-15 72.8

Find 75 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGTTTACTACGTCCTTTC+TGG 0.101868 1.3:+69626078 MS.gene49070:CDS
ACCCTTGCTTATGGCTATTA+AGG 0.124798 1.3:+69626251 MS.gene49070:CDS
CTCTTGGAAGTTGCGGGATT+GGG 0.149394 1.3:-69626133 None:intergenic
GATTTGACCGGTGATATTTC+TGG 0.252823 1.3:+69627834 MS.gene49070:CDS
AGGCGATGATGGACTCCTTT+AGG 0.261253 1.3:-69626005 None:intergenic
ACCGGTGATATTTCTGGTCT+TGG 0.268409 1.3:+69627840 MS.gene49070:CDS
GGCGATGATGGACTCCTTTA+GGG 0.276975 1.3:-69626004 None:intergenic
TACGTCCTTTCTGGTCTCTT+TGG 0.279840 1.3:+69626087 MS.gene49070:CDS
ATTTGAGCTTGACGCGTTAC+AGG 0.301755 1.3:+69627866 MS.gene49070:CDS
CCTCTTGGAAGTTGCGGGAT+TGG 0.303689 1.3:-69626134 None:intergenic
GGACTGGGAATACAAGTTTA+TGG 0.304869 1.3:+69627887 MS.gene49070:CDS
CTCCTCCTCTTGGAAGTTGC+GGG 0.307440 1.3:-69626139 None:intergenic
GTGGATTCAGCTTCAGTAAC+TGG 0.323655 1.3:-69627942 None:intergenic
CCCTTGCTTATGGCTATTAA+GGG 0.325886 1.3:+69626252 MS.gene49070:CDS
GGACCGTATGCTTTATTTGC+TGG 0.331470 1.3:+69627765 MS.gene49070:CDS
TCATGATAAACCCTTGCTTA+TGG 0.362127 1.3:+69626242 MS.gene49070:CDS
TTATCTGCCTCAACATTTGA+AGG 0.394915 1.3:-69628062 None:intergenic
AGCTTGACGCGTTACAGGAC+TGG 0.403993 1.3:+69627871 MS.gene49070:CDS
GTGATTTCACCTAGCTGAAC+AGG 0.406413 1.3:-69626186 None:intergenic
GACCACTTTCTTCACCATCT+TGG 0.410349 1.3:+69626044 MS.gene49070:CDS
TCTTGGAAGTTGCGGGATTG+GGG 0.417269 1.3:-69626132 None:intergenic
TGTAACGCGTCAAGCTCAAA+TGG 0.428078 1.3:-69627864 None:intergenic
CGATGGCCGGCGTTCAGCTG+TGG 0.449798 1.3:+69625977 None:intergenic
TAGACCGGTGTAGGCGATGA+TGG 0.470054 1.3:-69626016 None:intergenic
ATAAGCCTTGAGCTCTTCTT+CGG 0.471949 1.3:-69626208 None:intergenic
GTTTATGGAGAAGTATGTTA+AGG 0.473963 1.3:+69627902 MS.gene49070:CDS
GAATCCACGGGTGAACCATC+AGG 0.480454 1.3:+69627957 MS.gene49070:CDS
ACCAGAAAGGACGTAGTAAA+CGG 0.488478 1.3:-69626079 None:intergenic
CCTCCTCCTCTTGGAAGTTG+CGG 0.490295 1.3:-69626140 None:intergenic
GTATGCTTTATTTGCTGGCA+AGG 0.504997 1.3:+69627770 MS.gene49070:CDS
TATCTGCCTCAACATTTGAA+GGG 0.520292 1.3:-69628061 None:intergenic
GGCAAATAGAAGAGCCAAGA+TGG 0.520312 1.3:-69626058 None:intergenic
GCTTGACGCGTTACAGGACT+GGG 0.526300 1.3:+69627872 MS.gene49070:CDS
GAAAGTGGTCGGAGATAGAC+CGG 0.532113 1.3:-69626031 None:intergenic
TCTATGATGTCTCTCAGAGC+AGG 0.537470 1.3:+69626280 MS.gene49070:CDS
TTTGATCCGCCATCTTCAGT+TGG 0.541409 1.3:-69628011 None:intergenic
ACACAACAACGAGCGATGGC+CGG 0.545483 1.3:+69625964 None:intergenic
GATGGCCGGCGTTCAGCTGT+GGG 0.545916 1.3:+69625978 None:intergenic
GAAGAGCTCAAGGCTTATGA+TGG 0.549967 1.3:+69626213 MS.gene49070:CDS
TTTGATGAGAAAGATTTGAC+CGG 0.550185 1.3:+69627822 MS.gene49070:CDS
CAACTTCCAAGAGGAGGAGG+AGG 0.556609 1.3:+69626143 MS.gene49070:CDS
ATCTGCCTCAACATTTGAAG+GGG 0.560772 1.3:-69628060 None:intergenic
GCTGTTAATCCAACTGAAGA+TGG 0.564157 1.3:+69628002 MS.gene49070:CDS
TCAGCTGTGGGAAACCCTAA+AGG 0.566475 1.3:+69625990 MS.gene49070:CDS
GTAACGCGTCAAGCTCAAAT+GGG 0.568003 1.3:-69627863 None:intergenic
AGTAGCCAAAGAGACCAGAA+AGG 0.568870 1.3:-69626092 None:intergenic
CCGCAACTTCCAAGAGGAGG+AGG 0.571017 1.3:+69626140 MS.gene49070:CDS
CTTGGAAGTTGCGGGATTGG+GGG 0.575348 1.3:-69626131 None:intergenic
TTGCCAGCAAATAAAGCATA+CGG 0.582093 1.3:-69627768 None:intergenic
ATGGAGAAGTATGTTAAGGT+CGG 0.585025 1.3:+69627906 MS.gene49070:CDS
GGTCGGAGATAGACCGGTGT+AGG 0.586223 1.3:-69626025 None:intergenic
ACCCTTAATAGCCATAAGCA+AGG 0.587630 1.3:-69626253 None:intergenic
AATAAAGCATACGGTCCACC+CGG 0.588408 1.3:-69627759 None:intergenic
GTTACTGAAGCTGAATCCAC+GGG 0.589713 1.3:+69627945 MS.gene49070:CDS
CCCTTAATAGCCATAAGCAA+GGG 0.597837 1.3:-69626252 None:intergenic
GGTTTCCCACAGCTGAACGC+CGG 0.599948 1.3:-69625983 None:intergenic
AGTTACTGAAGCTGAATCCA+CGG 0.600398 1.3:+69627944 MS.gene49070:CDS
GAGTCCATCATCGCCTACAC+CGG 0.603823 1.3:+69626012 MS.gene49070:CDS
TGAACAGGTGGTCGGAGAGG+TGG 0.609555 1.3:-69626171 None:intergenic
CACCTAGCTGAACAGGTGGT+CGG 0.610497 1.3:-69626179 None:intergenic
CTCCGACCACCTGTTCAGCT+AGG 0.610888 1.3:+69626177 MS.gene49070:CDS
AGCTGAACAGGTGGTCGGAG+AGG 0.612379 1.3:-69626174 None:intergenic
ACCTGCAGCTGTTAAAAGTG+AGG 0.614328 1.3:+69628034 MS.gene49070:CDS
ATCCCGCAACTTCCAAGAGG+AGG 0.616485 1.3:+69626137 MS.gene49070:CDS
AGCCAAGATGGTGAAGAAAG+TGG 0.619359 1.3:-69626046 None:intergenic
GGAAACCCCTTCAAATGTTG+AGG 0.619610 1.3:+69628055 MS.gene49070:CDS
AATCACCGAAGAAGAGCTCA+AGG 0.634309 1.3:+69626203 MS.gene49070:CDS
AGATCCTGATGGTTCACCCG+TGG 0.644194 1.3:-69627961 None:intergenic
AAGATGGTGAAGAAAGTGGT+CGG 0.644524 1.3:-69626042 None:intergenic
GCCAAGACCAGAAATATCAC+CGG 0.647612 1.3:-69627841 None:intergenic
TCACGAGGAGTAGATCCTGA+TGG 0.661127 1.3:-69627972 None:intergenic
GTTAATCCAACTGAAGATGG+CGG 0.680061 1.3:+69628005 MS.gene49070:CDS
ATTTCACCTAGCTGAACAGG+TGG 0.686884 1.3:-69626183 None:intergenic
CCAATCCCGCAACTTCCAAG+AGG 0.696455 1.3:+69626134 MS.gene49070:CDS
TTAACAGCATCAACATCACG+AGG 0.728477 1.3:-69627987 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATACACATAATAGTTAA+TGG - chr1.3:69626907-69626926 None:intergenic 15.0%
!! TATTACTTTATTCTGATATA+AGG + chr1.3:69626857-69626876 MS.gene49070:intron 15.0%
!!! ACATTTTCTCAAATTATTAT+TGG + chr1.3:69626688-69626707 MS.gene49070:intron 15.0%
!! AAAGTAAAGTGATTTATGTT+TGG + chr1.3:69626450-69626469 MS.gene49070:intron 20.0%
!! TACACTAAGTTTATGATATA+AGG + chr1.3:69626824-69626843 MS.gene49070:intron 20.0%
!! TCTAACTTGAAGTTAAAATT+TGG + chr1.3:69627424-69627443 MS.gene49070:intron 20.0%
!!! TATATTCTTGTCTAAAGTTT+GGG + chr1.3:69626381-69626400 MS.gene49070:intron 20.0%
!!! TTATATTCTTGTCTAAAGTT+TGG + chr1.3:69626380-69626399 MS.gene49070:intron 20.0%
! AAAAACAAATGAAACACCAA+AGG - chr1.3:69627259-69627278 None:intergenic 25.0%
! AAAACAAATGAAACACCAAA+GGG - chr1.3:69627258-69627277 None:intergenic 25.0%
! AAAACAGAAGCTAAGAAAAA+AGG - chr1.3:69626317-69626336 None:intergenic 25.0%
! AAACAGAAGCTAAGAAAAAA+GGG - chr1.3:69626316-69626335 None:intergenic 25.0%
! AATAATCTGTTTATCCAAAC+AGG + chr1.3:69627173-69627192 MS.gene49070:intron 25.0%
! AGATCATAATAAATAGAGAG+AGG - chr1.3:69627708-69627727 None:intergenic 25.0%
! ATAAGACTTTGTATCTACTT+AGG - chr1.3:69627200-69627219 None:intergenic 25.0%
! CAAAATTAATTATGCTCGAA+AGG + chr1.3:69626562-69626581 MS.gene49070:intron 25.0%
! CTAGTCAAAATAGATTATTG+AGG + chr1.3:69627345-69627364 MS.gene49070:intron 25.0%
! GAATACTTTCATACAAAAGT+GGG - chr1.3:69627498-69627517 None:intergenic 25.0%
! GATCATAATAAATAGAGAGA+GGG - chr1.3:69627707-69627726 None:intergenic 25.0%
! TAAGACTTTGTATCTACTTA+GGG - chr1.3:69627199-69627218 None:intergenic 25.0%
! TAATTATGACTTCTGCAAAA+GGG - chr1.3:69626356-69626375 None:intergenic 25.0%
! TATGTGTATATTTGCATGTT+TGG + chr1.3:69626915-69626934 MS.gene49070:intron 25.0%
! TCATAAACTTAGTGTATGTT+TGG - chr1.3:69626820-69626839 None:intergenic 25.0%
! TCATAATTCAGTGTAATCAT+AGG - chr1.3:69626669-69626688 None:intergenic 25.0%
! TCTCAAATTATTATTGGTGT+CGG + chr1.3:69626694-69626713 MS.gene49070:intron 25.0%
! TGAATACTTTCATACAAAAG+TGG - chr1.3:69627499-69627518 None:intergenic 25.0%
! TTAATTATGACTTCTGCAAA+AGG - chr1.3:69626357-69626376 None:intergenic 25.0%
!! AGAATTGATTCTAACATGTT+TGG + chr1.3:69627371-69627390 MS.gene49070:intron 25.0%
!!! AAGTTAAAATTTGGAGCTTT+TGG + chr1.3:69627433-69627452 MS.gene49070:intron 25.0%
!!! TTGATTTGTAAGATTGATTC+TGG - chr1.3:69627540-69627559 None:intergenic 25.0%
!!! TTTTGATAATTATGTGTCCA+TGG + chr1.3:69626881-69626900 MS.gene49070:intron 25.0%
CTACTAACATAAATTGAGAC+TGG + chr1.3:69626958-69626977 MS.gene49070:intron 30.0%
TTTGATGAGAAAGATTTGAC+CGG + chr1.3:69627822-69627841 MS.gene49070:CDS 30.0%
! AGAATTGATTCTGACATGTT+TGG - chr1.3:69626759-69626778 None:intergenic 30.0%
! CTTCACCTTCAAATCAATTT+TGG + chr1.3:69626777-69626796 MS.gene49070:intron 30.0%
! GTTTATGGAGAAGTATGTTA+AGG + chr1.3:69627902-69627921 MS.gene49070:CDS 30.0%
!! AATTGATTCTACCTAGCTTT+TGG - chr1.3:69626535-69626554 None:intergenic 30.0%
AAAGATGCGCTTATGCTTAA+TGG - chr1.3:69627232-69627251 None:intergenic 35.0%
AAGATGCGCTTATGCTTAAT+GGG - chr1.3:69627231-69627250 None:intergenic 35.0%
ATAGTCTAGCTGATCTAAAG+TGG - chr1.3:69627313-69627332 None:intergenic 35.0%
ATGAAACACGAACACATACA+CGG - chr1.3:69626723-69626742 None:intergenic 35.0%
CAATTTCCAAGAAACTGAAG+TGG + chr1.3:69627646-69627665 MS.gene49070:intron 35.0%
CACATAATAGTTAATGGCCA+TGG - chr1.3:69626901-69626920 None:intergenic 35.0%
CACTTCAGTTTCTTGGAAAT+TGG - chr1.3:69627648-69627667 None:intergenic 35.0%
CTAGGTAGAATCAATTCTTG+AGG + chr1.3:69626539-69626558 MS.gene49070:intron 35.0%
CTTATTATGAGAAGAGCTTG+TGG + chr1.3:69627139-69627158 MS.gene49070:intron 35.0%
TATCTGCCTCAACATTTGAA+GGG - chr1.3:69628064-69628083 None:intergenic 35.0%
TCATGATAAACCCTTGCTTA+TGG + chr1.3:69626242-69626261 MS.gene49070:CDS 35.0%
TTATCTGCCTCAACATTTGA+AGG - chr1.3:69628065-69628084 None:intergenic 35.0%
TTGCCAGCAAATAAAGCATA+CGG - chr1.3:69627771-69627790 None:intergenic 35.0%
TTGTTGTAATGTTGTCTGCT+TGG + chr1.3:69627277-69627296 MS.gene49070:intron 35.0%
! ATGGAGAAGTATGTTAAGGT+CGG + chr1.3:69627906-69627925 MS.gene49070:CDS 35.0%
! TGGGTTGAACAACAAATTCA+AGG - chr1.3:69627479-69627498 None:intergenic 35.0%
!! CAATTCTAGAACCAAAAGCT+AGG + chr1.3:69626521-69626540 MS.gene49070:intron 35.0%
AAGATGGTGAAGAAAGTGGT+CGG - chr1.3:69626045-69626064 None:intergenic 40.0%
ACCAGAAAGGACGTAGTAAA+CGG - chr1.3:69626082-69626101 None:intergenic 40.0%
ACCCTTAATAGCCATAAGCA+AGG - chr1.3:69626256-69626275 None:intergenic 40.0%
ACCCTTGCTTATGGCTATTA+AGG + chr1.3:69626251-69626270 MS.gene49070:CDS 40.0%
AGATGCGCTTATGCTTAATG+GGG - chr1.3:69627230-69627249 None:intergenic 40.0%
AGTTACTGAAGCTGAATCCA+CGG + chr1.3:69627944-69627963 MS.gene49070:CDS 40.0%
ATAAGCCTTGAGCTCTTCTT+CGG - chr1.3:69626211-69626230 None:intergenic 40.0%
ATCTGCCTCAACATTTGAAG+GGG - chr1.3:69628063-69628082 None:intergenic 40.0%
CCCTTAATAGCCATAAGCAA+GGG - chr1.3:69626255-69626274 None:intergenic 40.0%
CCCTTGCTTATGGCTATTAA+GGG + chr1.3:69626252-69626271 MS.gene49070:CDS 40.0%
GATGTACCACTTCAGTTTCT+TGG - chr1.3:69627655-69627674 None:intergenic 40.0%
GATTTGACCGGTGATATTTC+TGG + chr1.3:69627834-69627853 MS.gene49070:CDS 40.0%
GCTGTTAATCCAACTGAAGA+TGG + chr1.3:69628002-69628021 MS.gene49070:CDS 40.0%
GGACTGGGAATACAAGTTTA+TGG + chr1.3:69627887-69627906 MS.gene49070:CDS 40.0%
GTTAATCCAACTGAAGATGG+CGG + chr1.3:69628005-69628024 MS.gene49070:CDS 40.0%
TTAACAGCATCAACATCACG+AGG - chr1.3:69627990-69628009 None:intergenic 40.0%
! ATCTGTAATTGTGTCGTTCC+AGG + chr1.3:69627724-69627743 MS.gene49070:intron 40.0%
! TGTATGTTTGGTTCCACTTC+TGG - chr1.3:69626808-69626827 None:intergenic 40.0%
! TGTCGTTCCAGGATGTTTTA+TGG + chr1.3:69627735-69627754 MS.gene49070:intron 40.0%
! TTCCAGGATGTTTTATGGAC+CGG + chr1.3:69627740-69627759 MS.gene49070:intron 40.0%
!! AGGGGCCAAAATTGATTTGA+AGG - chr1.3:69626785-69626804 None:intergenic 40.0%
!! GTATGCTTTATTTGCTGGCA+AGG + chr1.3:69627770-69627789 MS.gene49070:CDS 40.0%
AATAAAGCATACGGTCCACC+CGG - chr1.3:69627762-69627781 None:intergenic 45.0%
AATCACCGAAGAAGAGCTCA+AGG + chr1.3:69626203-69626222 MS.gene49070:CDS 45.0%
ACCTGCAGCTGTTAAAAGTG+AGG + chr1.3:69628034-69628053 MS.gene49070:CDS 45.0%
AGCCAAGATGGTGAAGAAAG+TGG - chr1.3:69626049-69626068 None:intergenic 45.0%
AGTAGCCAAAGAGACCAGAA+AGG - chr1.3:69626095-69626114 None:intergenic 45.0%
ATTTCACCTAGCTGAACAGG+TGG - chr1.3:69626186-69626205 None:intergenic 45.0%
ATTTGAGCTTGACGCGTTAC+AGG + chr1.3:69627866-69627885 MS.gene49070:CDS 45.0%
GAAGAGCTCAAGGCTTATGA+TGG + chr1.3:69626213-69626232 MS.gene49070:CDS 45.0%
GACCACTTTCTTCACCATCT+TGG + chr1.3:69626044-69626063 MS.gene49070:CDS 45.0%
GATGCGCTTATGCTTAATGG+GGG - chr1.3:69627229-69627248 None:intergenic 45.0%
GCCAAGACCAGAAATATCAC+CGG - chr1.3:69627844-69627863 None:intergenic 45.0%
GGAAACCCCTTCAAATGTTG+AGG + chr1.3:69628055-69628074 MS.gene49070:CDS 45.0%
GGCAAATAGAAGAGCCAAGA+TGG - chr1.3:69626061-69626080 None:intergenic 45.0%
GTAACGCGTCAAGCTCAAAT+GGG - chr1.3:69627866-69627885 None:intergenic 45.0%
GTATCTACTTAGGGCCTGTT+TGG - chr1.3:69627190-69627209 None:intergenic 45.0%
GTGATTTCACCTAGCTGAAC+AGG - chr1.3:69626189-69626208 None:intergenic 45.0%
GTGGATTCAGCTTCAGTAAC+TGG - chr1.3:69627945-69627964 None:intergenic 45.0%
GTTACTGAAGCTGAATCCAC+GGG + chr1.3:69627945-69627964 MS.gene49070:CDS 45.0%
TCTATGATGTCTCTCAGAGC+AGG + chr1.3:69626280-69626299 MS.gene49070:CDS 45.0%
TGTAACGCGTCAAGCTCAAA+TGG - chr1.3:69627867-69627886 None:intergenic 45.0%
TGTGTGTGTGTGTGTGTGTT+TGG - chr1.3:69627580-69627599 None:intergenic 45.0%
TTTGATCCGCCATCTTCAGT+TGG - chr1.3:69628014-69628033 None:intergenic 45.0%
! AAGCGCATCTTTTGTCCCTT+TGG + chr1.3:69627240-69627259 MS.gene49070:intron 45.0%
! ACGAAAGCATAGACACTCCT+CGG + chr1.3:69626586-69626605 MS.gene49070:intron 45.0%
! ATGTTTGGTTCCACTTCTGG+AGG - chr1.3:69626805-69626824 None:intergenic 45.0%
! TACGTCCTTTCTGGTCTCTT+TGG + chr1.3:69626087-69626106 MS.gene49070:CDS 45.0%
! TCCAGGATGTTTTATGGACC+GGG + chr1.3:69627741-69627760 MS.gene49070:intron 45.0%
! TGTTTGGTTCCACTTCTGGA+GGG - chr1.3:69626804-69626823 None:intergenic 45.0%
!! ACCGGTGATATTTCTGGTCT+TGG + chr1.3:69627840-69627859 MS.gene49070:CDS 45.0%
!! GGACCGTATGCTTTATTTGC+TGG + chr1.3:69627765-69627784 MS.gene49070:CDS 45.0%
!! TCCTCACTTTTAACAGCTGC+AGG - chr1.3:69628038-69628057 None:intergenic 45.0%
!! TGTGTGTGTGTTTGGTTCTG+TGG - chr1.3:69627572-69627591 None:intergenic 45.0%
ACACCAGGACACATAATCCG+AGG - chr1.3:69626606-69626625 None:intergenic 50.0%
ACCCGGTCCATAAAACATCC+TGG - chr1.3:69627745-69627764 None:intergenic 50.0%
ACTCCTCGGATTATGTGTCC+TGG + chr1.3:69626600-69626619 MS.gene49070:intron 50.0%
CGGATTATGTGTCCTGGTGT+TGG + chr1.3:69626606-69626625 MS.gene49070:intron 50.0%
CTCTTGGAAGTTGCGGGATT+GGG - chr1.3:69626136-69626155 None:intergenic 50.0%
GAAAGTGGTCGGAGATAGAC+CGG - chr1.3:69626034-69626053 None:intergenic 50.0%
GCCGTTTACTACGTCCTTTC+TGG + chr1.3:69626078-69626097 MS.gene49070:CDS 50.0%
TCACGAGGAGTAGATCCTGA+TGG - chr1.3:69627975-69627994 None:intergenic 50.0%
TCAGCTGTGGGAAACCCTAA+AGG + chr1.3:69625990-69626009 MS.gene49070:CDS 50.0%
TCTTGGAAGTTGCGGGATTG+GGG - chr1.3:69626135-69626154 None:intergenic 50.0%
! AGGATGTTTTATGGACCGGG+TGG + chr1.3:69627744-69627763 MS.gene49070:intron 50.0%
! CGTGTCGATGTCAGACACTA+AGG - chr1.3:69626637-69626656 None:intergenic 50.0%
! GTTTGGTTCCACTTCTGGAG+GGG - chr1.3:69626803-69626822 None:intergenic 50.0%
!! AATTTTGGCCCCTCCAGAAG+TGG + chr1.3:69626792-69626811 MS.gene49070:intron 50.0%
!! AGGCGATGATGGACTCCTTT+AGG - chr1.3:69626008-69626027 None:intergenic 50.0%
!! GGCGATGATGGACTCCTTTA+GGG - chr1.3:69626007-69626026 None:intergenic 50.0%
ACTAAGGCGTGTCCAACACC+AGG - chr1.3:69626621-69626640 None:intergenic 55.0%
AGATCCTGATGGTTCACCCG+TGG - chr1.3:69627964-69627983 None:intergenic 55.0%
AGCTTGACGCGTTACAGGAC+TGG + chr1.3:69627871-69627890 MS.gene49070:CDS 55.0%
ATCCCGCAACTTCCAAGAGG+AGG + chr1.3:69626137-69626156 MS.gene49070:CDS 55.0%
CAACTTCCAAGAGGAGGAGG+AGG + chr1.3:69626143-69626162 MS.gene49070:CDS 55.0%
CACCTAGCTGAACAGGTGGT+CGG - chr1.3:69626182-69626201 None:intergenic 55.0%
CCAATCCCGCAACTTCCAAG+AGG + chr1.3:69626134-69626153 MS.gene49070:CDS 55.0%
CCTCCTCCTCTTGGAAGTTG+CGG - chr1.3:69626143-69626162 None:intergenic 55.0%
CCTCTTGGAAGTTGCGGGAT+TGG - chr1.3:69626137-69626156 None:intergenic 55.0%
CTCCTCCTCTTGGAAGTTGC+GGG - chr1.3:69626142-69626161 None:intergenic 55.0%
CTTGGAAGTTGCGGGATTGG+GGG - chr1.3:69626134-69626153 None:intergenic 55.0%
GAATCCACGGGTGAACCATC+AGG + chr1.3:69627957-69627976 MS.gene49070:CDS 55.0%
GAGTCCATCATCGCCTACAC+CGG + chr1.3:69626012-69626031 MS.gene49070:CDS 55.0%
GCTTGACGCGTTACAGGACT+GGG + chr1.3:69627872-69627891 MS.gene49070:CDS 55.0%
TAGACCGGTGTAGGCGATGA+TGG - chr1.3:69626019-69626038 None:intergenic 55.0%
AGCTGAACAGGTGGTCGGAG+AGG - chr1.3:69626177-69626196 None:intergenic 60.0%
AGTTGCGGGATTGGGGGTGA+AGG - chr1.3:69626128-69626147 None:intergenic 60.0%
CCGCAACTTCCAAGAGGAGG+AGG + chr1.3:69626140-69626159 MS.gene49070:CDS 60.0%
CTCCGACCACCTGTTCAGCT+AGG + chr1.3:69626177-69626196 MS.gene49070:CDS 60.0%
GAAGCTCCTCCTCCTCCTCT+TGG - chr1.3:69626152-69626171 None:intergenic 60.0%
GGTCGGAGATAGACCGGTGT+AGG - chr1.3:69626028-69626047 None:intergenic 60.0%
GGTTTCCCACAGCTGAACGC+CGG - chr1.3:69625986-69626005 None:intergenic 60.0%
TGAACAGGTGGTCGGAGAGG+TGG - chr1.3:69626174-69626193 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 69625979 69628091 69625979 ID=MS.gene49070
chr1.3 mRNA 69625979 69628091 69625979 ID=MS.gene49070.t1;Parent=MS.gene49070
chr1.3 exon 69625979 69626301 69625979 ID=MS.gene49070.t1.exon1;Parent=MS.gene49070.t1
chr1.3 CDS 69625979 69626301 69625979 ID=cds.MS.gene49070.t1;Parent=MS.gene49070.t1
chr1.3 exon 69627746 69628091 69627746 ID=MS.gene49070.t1.exon2;Parent=MS.gene49070.t1
chr1.3 CDS 69627746 69628091 69627746 ID=cds.MS.gene49070.t1;Parent=MS.gene49070.t1
Gene Sequence

>MS.gene49070

ATGGCCGGCGTTCAGCTGTGGGAAACCCTAAAGGAGTCCATCATCGCCTACACCGGTCTATCTCCGACCACTTTCTTCACCATCTTGGCTCTTCTATTTGCCGTTTACTACGTCCTTTCTGGTCTCTTTGGCTACTCTTCTTCTGACCTTCACCCCCAATCCCGCAACTTCCAAGAGGAGGAGGAGGAGCTTCCACCTCTCCGACCACCTGTTCAGCTAGGTGAAATCACCGAAGAAGAGCTCAAGGCTTATGATGGCAACGATCATGATAAACCCTTGCTTATGGCTATTAAGGGTCAGATCTATGATGTCTCTCAGAGCAGGTTTAACATAACCCTTTTTTCTTAGCTTCTGTTTTATTCATTTTTATGATACCCTTTTGCAGAAGTCATAATTAATTTTTATATTCTTGTCTAAAGTTTGGGTTGAGTGAATTGATTCTGTAAAATTGAGTTTGACTAAAAGTGAGTTAAAGTAAAGTGATTTATGTTTGGATAAACTCATGTAAAAGTAAGCTGAATTGTAGATTTGTGTGTAAAAATCAATTCTAGAACCAAAAGCTAGGTAGAATCAATTCTTGAGGCAAAATTAATTATGCTCGAAAGGTACGAAAGCATAGACACTCCTCGGATTATGTGTCCTGGTGTTGGACACGCCTTAGTGTCTGACATCGACACGTAACTGATACCTATGATTACACTGAATTATGACATTTTCTCAAATTATTATTGGTGTCGGTGTCCGTGTATGTGTTCGTGTTTCATAGCTAGAAAGCAACCAAACATGTCAGAATCAATTCTTCACCTTCAAATCAATTTTGGCCCCTCCAGAAGTGGAACCAAACATACACTAAGTTTATGATATAAGGATTGAGTGTATATTACTTTATTCTGATATAAGGATTTTGATAATTATGTGTCCATGGCCATTAACTATTATGTGTATATTTGCATGTTTGGATAGACTTATTTGAACTTATCTACTAACATAAATTGAGACTGGTAAACTTTTGAAAACAGCTTATGAATATGACAATTTTCGAAAGCTTTTTTCAACTTATTTTCATCAGTTTTCTAATATAACTTATAAAAACAACTTATAGCATATACAAAAACAATTTAATGTTATTTATCTTTTGCTATAAAAATCGCTTAAGCAAGCTTATTATGAGAAGAGCTTGTGGTCTAAGCTGCAAATAATCTGTTTATCCAAACAGGCCCTAAGTAGATACAAAGTCTTATACTGTGCCCCCATTAAGCATAAGCGCATCTTTTGTCCCTTTGGTGTTTCATTTGTTTTTGTTGTAATGTTGTCTGCTTGGTCTGTTCTATCCACTTTAGATCAGCTAGACTATATGCTTTTGAGACTAGTCAAAATAGATTATTGAGGTGTAGAATTGATTCTAACATGTTTGGATGTTAATCTATTTTGTCTTGAGAATTGATTCTAACTTGAAGTTAAAATTTGGAGCTTTTGGTCTCTACAATTTAGTTTGAACCTTGAATTTGTTGTTCAACCCACTTTTGTATGAAAGTATTCAAACATCAGTCACTTTTCGCCAGAATCAATCTTACAAATCAACTATTATCGCCACAGAACCAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTTAATGCCAATTTCCAAGAAACTGAAGTGGTACATCACACATGATTTTGCTTGAGAACTCAATCACCCTCTCTCTATTTATTATGATCTGTAATTGTGTCGTTCCAGGATGTTTTATGGACCGGGTGGACCGTATGCTTTATTTGCTGGCAAGGATGCTAGTCGAGCATTAGCAAAGATGTCTTTTGATGAGAAAGATTTGACCGGTGATATTTCTGGTCTTGGCCCATTTGAGCTTGACGCGTTACAGGACTGGGAATACAAGTTTATGGAGAAGTATGTTAAGGTCGGAACTATTAAAAAGCCAGTTACTGAAGCTGAATCCACGGGTGAACCATCAGGATCTACTCCTCGTGATGTTGATGCTGTTAATCCAACTGAAGATGGCGGATCAAAACCTGCAGCTGTTAAAAGTGAGGAAACCCCTTCAAATGTTGAGGCAGATAAAGAGTAA
Protein sequence

>MS.gene49070.t1

MAGVQLWETLKESIIAYTGLSPTTFFTILALLFAVYYVLSGLFGYSSSDLHPQSRNFQEEEEELPPLRPPVQLGEITEEELKAYDGNDHDKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFDEKDLTGDISGLGPFELDALQDWEYKFMEKYVKVGTIKKPVTEAESTGEPSGSTPRDVDAVNPTEDGGSKPAAVKSEETPSNVEADKE