AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057048


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057048.t1 MTR_5g088730 99.684 316 1 0 1 316 176 491 0.0 625
MS.gene057048.t1 MTR_6g032995 28.870 239 155 6 1 227 166 401 1.19e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057048.t1 AT5G19500 73.602 322 77 3 1 315 180 500 4.11e-156 446

Find 73 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCACTTATACTCTCTTTAT+TGG 0.117288 5.4:+69835013 MS.gene057048:CDS
ATCTTACATTGGATTTGTTT+TGG 0.161342 5.4:+69834328 MS.gene057048:CDS
CTTCCTCCTGGAACTATTTC+AGG 0.169530 5.4:-69835430 None:intergenic
CACTTATTCTGTTCCTAGTT+TGG 0.216924 5.4:+69834079 MS.gene057048:CDS
CATTGGAGCTGCTTGGAAAT+TGG 0.242103 5.4:-69833741 None:intergenic
CTAATGGTTCTTGGTTGTTC+AGG 0.261901 5.4:+69835463 MS.gene057048:CDS
TACTGTCCCTAAAGTTCTTC+TGG 0.295009 5.4:-69832228 None:intergenic
CGCTTTATTGGTGCAATTAA+CGG 0.312108 5.4:+69832974 MS.gene057048:CDS
GCTTTATTGGTGCAATTAAC+GGG 0.319160 5.4:+69832975 MS.gene057048:CDS
TCAATGGCCAGAAGAACTTT+AGG 0.325642 5.4:+69832221 None:intergenic
TTTAAAGCCTTGGACTTTGC+TGG 0.326378 5.4:+69835050 MS.gene057048:CDS
TTGGACTTTGCTGGAACATA+TGG 0.347713 5.4:+69835059 MS.gene057048:CDS
ATAACCCTACTAATGGTTCT+TGG 0.355239 5.4:+69835454 MS.gene057048:CDS
CGCACTCTCATTTGTTTACC+AGG 0.361529 5.4:+69833778 MS.gene057048:CDS
ACAAATGAGAGTGCGATAAT+TGG 0.362712 5.4:-69833770 None:intergenic
AGATCTTCAAATGGAACAAT+TGG 0.371731 5.4:+69834165 MS.gene057048:CDS
TGTATGGAAGTGGCCTGTTT+TGG 0.374979 5.4:-69834974 None:intergenic
AAACTACCTGAAATAGTTCC+AGG 0.375276 5.4:+69835424 MS.gene057048:CDS
CAGTAGGAGTTCAAATTTCA+TGG 0.400109 5.4:+69832246 MS.gene057048:CDS
ATATGTAGCCAGCGCTTTAT+TGG 0.403549 5.4:+69832962 MS.gene057048:intron
GAAGATCTCAACTGTTGTAA+TGG 0.406888 5.4:-69834150 None:intergenic
AAGGAGACTTGTTAAAAGTA+AGG 0.407800 5.4:+69833907 MS.gene057048:CDS
GTTCTTTGTACAAATCTTGA+AGG 0.411816 5.4:+69833888 MS.gene057048:CDS
ATTAACGGGGTTCTAGTAGT+TGG 0.418435 5.4:+69832989 MS.gene057048:CDS
ATCTGAAGAACGAGCTATAT+AGG 0.422804 5.4:-69832552 None:intergenic
TCAAGATTTGTACAAAGAAC+AGG 0.422918 5.4:-69833885 None:intergenic
GGAACTAAAGTCAGTATGTA+TGG 0.423140 5.4:-69834990 None:intergenic
TGCAAGTGGAAACCTGCATT+TGG 0.434164 5.4:+69833703 MS.gene057048:CDS
AGTGAGAATATCTCAACTAT+AGG 0.436796 5.4:-69834290 None:intergenic
GCGATAATTGGTATACTCAT+TGG 0.437500 5.4:-69833758 None:intergenic
ATCTCCCAACAGGCCAAAAC+AGG 0.442842 5.4:+69834961 MS.gene057048:CDS
CAATGGCCAGAAGAACTTTA+GGG 0.450193 5.4:+69832222 None:intergenic
GATTGTCACCAACAGTTCCT+AGG 0.453386 5.4:-69834113 None:intergenic
CTGCAATGTCTTGGTCAGAT+AGG 0.453502 5.4:+69835377 MS.gene057048:CDS
TTTGGAGGCATATGCTACTT+TGG 0.460980 5.4:+69832719 MS.gene057048:CDS
GTTTGGAATGGTGTTATCCT+AGG 0.466536 5.4:+69834096 MS.gene057048:CDS
AACAACCAAGAACCATTAGT+AGG 0.469226 5.4:-69835459 None:intergenic
AGTAGGGTTATCCTTCCTCC+TGG 0.469240 5.4:-69835442 None:intergenic
GGATAACACCATTCCAAACT+AGG 0.477436 5.4:-69834092 None:intergenic
TCAGTGCTGAATCTCCCAAC+AGG 0.479405 5.4:+69834951 MS.gene057048:intron
GAGGCATATGCTACTTTGGA+AGG 0.486837 5.4:+69832723 MS.gene057048:CDS
GTATACTCATTGGAGCTGCT+TGG 0.490266 5.4:-69833748 None:intergenic
TCCAATAAAGAGAGTATAAG+TGG 0.490812 5.4:-69835014 None:intergenic
AGGAAGGATAACCCTACTAA+TGG 0.492382 5.4:+69835447 MS.gene057048:CDS
TTAAAAGAGCATCCAAATGC+AGG 0.494323 5.4:-69833715 None:intergenic
ATTCTGTTCCTAGTTTGGAA+TGG 0.494543 5.4:+69834084 MS.gene057048:CDS
TTATTCCAGCTGCAATGTCT+TGG 0.502595 5.4:+69835368 MS.gene057048:CDS
TGTAATGGATCTAATCCCAT+TGG 0.516758 5.4:-69834135 None:intergenic
CAACAGTTGAGATCTTCAAA+TGG 0.523385 5.4:+69834156 MS.gene057048:CDS
CAAACTAGGAACAGAATAAG+TGG 0.525691 5.4:-69834078 None:intergenic
CTGAAATAGTTCCAGGAGGA+AGG 0.527976 5.4:+69835431 MS.gene057048:CDS
AGGCAATCAGAAGGGCGTAA+TGG 0.529231 5.4:-69832532 None:intergenic
GCAATTGCTACATCTTACAT+TGG 0.529299 5.4:+69834317 MS.gene057048:CDS
AAAGTCAGTATGTATGGAAG+TGG 0.537228 5.4:-69834984 None:intergenic
GTTCTAGTAGTTGGAATCAT+CGG 0.544435 5.4:+69832998 MS.gene057048:CDS
TCTGACCAAGACATTGCAGC+TGG 0.549499 5.4:-69835373 None:intergenic
AGAAGAACTTTAGGGACAGT+AGG 0.553655 5.4:+69832230 MS.gene057048:CDS
ACTGTTGGTGACAATCCAAT+GGG 0.561349 5.4:+69834120 MS.gene057048:CDS
AACTGTTGGTGACAATCCAA+TGG 0.566366 5.4:+69834119 MS.gene057048:CDS
GACTTTGCTGGAACATATGG+AGG 0.569015 5.4:+69835062 MS.gene057048:CDS
TGCAGGAGTGCAATAATACT+AGG 0.575731 5.4:+69834045 MS.gene057048:intron
TATAATACATACAGTCTGCA+AGG 0.577013 5.4:-69834364 None:intergenic
GGTGTTATCCTAGGAACTGT+TGG 0.594469 5.4:+69834105 MS.gene057048:CDS
GAGCTATATAGGCAATCAGA+AGG 0.598567 5.4:-69832541 None:intergenic
CTATATTAGACAGTTGCAAG+TGG 0.602825 5.4:+69833689 MS.gene057048:intron
AGTGCAATAATACTAGGCAC+TGG 0.606834 5.4:+69834051 MS.gene057048:CDS
ACAACCAAGAACCATTAGTA+GGG 0.608420 5.4:-69835458 None:intergenic
TAATTGCACCAATAAAGCGC+TGG 0.615874 5.4:-69832970 None:intergenic
CTTTATTGGTGCAATTAACG+GGG 0.618716 5.4:+69832976 MS.gene057048:CDS
ATATGTTCCAGCAAAGTCCA+AGG 0.621878 5.4:-69835057 None:intergenic
AATAAAGAGAGTATAAGTGG+TGG 0.637112 5.4:-69835011 None:intergenic
AGCTATATAGGCAATCAGAA+GGG 0.643728 5.4:-69832540 None:intergenic
CTACCTGAAATAGTTCCAGG+AGG 0.717690 5.4:+69835427 MS.gene057048:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATTTTCAAATTTTAAAAT+AGG + chr5.4:69833098-69833117 MS.gene057048:intron 10.0%
!! GAAAATTAAGACATAATTTA+AGG - chr5.4:69832626-69832645 None:intergenic 15.0%
!! TTTGTAAAAAAAACATATTG+CGG + chr5.4:69834620-69834639 MS.gene057048:intron 15.0%
!! AAACAAAAATTAGACGTATT+CGG + chr5.4:69833225-69833244 MS.gene057048:intron 20.0%
!! AACTAAAATTAACATGGAAA+TGG - chr5.4:69835112-69835131 None:intergenic 20.0%
!! AATTGCAACTAAAATTAACA+TGG - chr5.4:69835118-69835137 None:intergenic 20.0%
!! TAAATAGTCATGAAACTTTA+AGG - chr5.4:69834233-69834252 None:intergenic 20.0%
!! TAATCTAAATCAATCTGATT+TGG - chr5.4:69833464-69833483 None:intergenic 20.0%
!! TACGATAATGAAATATTACA+TGG + chr5.4:69833599-69833618 MS.gene057048:intron 20.0%
!! TCAAAAGATAAGAAAGAAAT+TGG - chr5.4:69834394-69834413 None:intergenic 20.0%
!! TCTATGAGATAAATAAACTT+AGG + chr5.4:69835195-69835214 MS.gene057048:intron 20.0%
!! TTAGATTAGACGTTTAATAT+TGG + chr5.4:69833476-69833495 MS.gene057048:intron 20.0%
!! TTTCAATTATGCAATAGTTA+GGG + chr5.4:69832402-69832421 MS.gene057048:intron 20.0%
!!! AAGGCTTTAAAAAATATTTC+AGG - chr5.4:69835041-69835060 None:intergenic 20.0%
!!! AATACGTCTAATTTTTGTTT+AGG - chr5.4:69833225-69833244 None:intergenic 20.0%
!!! ACTTTGTTTTCATTGATTTT+TGG + chr5.4:69832701-69832720 MS.gene057048:CDS 20.0%
!!! AGGCTTTAAAAAATATTTCA+GGG - chr5.4:69835040-69835059 None:intergenic 20.0%
!!! ATATTTGTTTCTTGAAAACT+TGG + chr5.4:69835294-69835313 MS.gene057048:intron 20.0%
!!! CTATTTTCCTAAATTATTAC+CGG - chr5.4:69832830-69832849 None:intergenic 20.0%
!!! TAATTTTCATATACTTTGTC+AGG + chr5.4:69832638-69832657 MS.gene057048:intron 20.0%
!!! TGAAATATTTTTTAAAGCCT+TGG + chr5.4:69835040-69835059 MS.gene057048:CDS 20.0%
!!! TTTTCAATTATGCAATAGTT+AGG + chr5.4:69832401-69832420 MS.gene057048:intron 20.0%
! ACCTAAACTTTAGTTAAGAA+TGG - chr5.4:69835269-69835288 None:intergenic 25.0%
! AGTAAACTTCATATGATCTT+TGG + chr5.4:69833146-69833165 MS.gene057048:intron 25.0%
! AGTCGATAAAATTGAAATGA+TGG - chr5.4:69833983-69834002 None:intergenic 25.0%
! ATATATGCTTATTCAGAATG+TGG + chr5.4:69833860-69833879 MS.gene057048:intron 25.0%
! ATTTAATGCAAGCAAACTAT+TGG + chr5.4:69832293-69832312 MS.gene057048:intron 25.0%
! ATTTCAAACAAGTTATCCAT+TGG - chr5.4:69833538-69833557 None:intergenic 25.0%
! GCAAAATCACAAATAACAAA+TGG + chr5.4:69833341-69833360 MS.gene057048:intron 25.0%
! GGATAACATGTTCTTATAAA+TGG + chr5.4:69833246-69833265 MS.gene057048:intron 25.0%
! TCCATTCTTAACTAAAGTTT+AGG + chr5.4:69835265-69835284 MS.gene057048:intron 25.0%
!!! AATGTTTTTTGTTTTGTTGC+AGG + chr5.4:69834028-69834047 MS.gene057048:intron 25.0%
!!! ATCTTACATTGGATTTGTTT+TGG + chr5.4:69834328-69834347 MS.gene057048:CDS 25.0%
!!! TCTTACATTGGATTTGTTTT+GGG + chr5.4:69834329-69834348 MS.gene057048:CDS 25.0%
!!! TCTTTTGATTAAAGCTAATG+CGG + chr5.4:69834406-69834425 MS.gene057048:intron 25.0%
!!! TTGTTTTCATTGATTTTTGG+AGG + chr5.4:69832704-69832723 MS.gene057048:CDS 25.0%
AACATGTTCTTATAAATGGC+AGG + chr5.4:69833250-69833269 MS.gene057048:intron 30.0%
AATCTCCAATCTTTGAACAA+CGG + chr5.4:69833811-69833830 MS.gene057048:intron 30.0%
ACCACTTATACTCTCTTTAT+TGG + chr5.4:69835013-69835032 MS.gene057048:CDS 30.0%
AGATAACATGCTCCAAATAA+AGG + chr5.4:69833286-69833305 MS.gene057048:intron 30.0%
AGATCTTCAAATGGAACAAT+TGG + chr5.4:69834165-69834184 MS.gene057048:CDS 30.0%
AGTGAGAATATCTCAACTAT+AGG - chr5.4:69834293-69834312 None:intergenic 30.0%
ATGAACAATGCTTCATTTGT+TGG + chr5.4:69834864-69834883 MS.gene057048:intron 30.0%
CAGTAGTAGCTAAAAGAAAA+AGG - chr5.4:69834210-69834229 None:intergenic 30.0%
GTTCTTTGTACAAATCTTGA+AGG + chr5.4:69833888-69833907 MS.gene057048:CDS 30.0%
TACACACAATAAACAATCTC+AGG + chr5.4:69833399-69833418 MS.gene057048:intron 30.0%
TAGTTAAGAATGGATCGTTT+AGG - chr5.4:69835259-69835278 None:intergenic 30.0%
TATAATACATACAGTCTGCA+AGG - chr5.4:69834367-69834386 None:intergenic 30.0%
TCAAGATTTGTACAAAGAAC+AGG - chr5.4:69833888-69833907 None:intergenic 30.0%
TCACAGATATATAGCCATAT+AGG + chr5.4:69833196-69833215 MS.gene057048:intron 30.0%
TGTTCAAAGATTGGAGATTA+AGG - chr5.4:69833810-69833829 None:intergenic 30.0%
TTAGTTATTAAGCATGCTAG+AGG - chr5.4:69834754-69834773 None:intergenic 30.0%
TTTATCTCATAGACAAACTC+CGG - chr5.4:69835188-69835207 None:intergenic 30.0%
! AATAAAGAGAGTATAAGTGG+TGG - chr5.4:69835014-69835033 None:intergenic 30.0%
! ATAATTTAAGGCCTAGTTAG+TGG - chr5.4:69832614-69832633 None:intergenic 30.0%
! CACTTTGATTTAAGAGAAAC+GGG - chr5.4:69832370-69832389 None:intergenic 30.0%
! CCACTTTGATTTAAGAGAAA+CGG - chr5.4:69832371-69832390 None:intergenic 30.0%
! GATATCTTGACGAATTTTCT+TGG + chr5.4:69832572-69832591 MS.gene057048:CDS 30.0%
! TCCAATAAAGAGAGTATAAG+TGG - chr5.4:69835017-69835036 None:intergenic 30.0%
! TTTTCATATACTTTGTCAGG+AGG + chr5.4:69832641-69832660 MS.gene057048:intron 30.0%
!! AAGGAGACTTGTTAAAAGTA+AGG + chr5.4:69833907-69833926 MS.gene057048:CDS 30.0%
!! GAATCCTATTAGCCTTTATT+TGG - chr5.4:69833301-69833320 None:intergenic 30.0%
!! TGTTGCACATTTTAAAGACT+AGG + chr5.4:69834777-69834796 MS.gene057048:intron 30.0%
AAAAACATATTGCGGAACGA+TGG + chr5.4:69834628-69834647 MS.gene057048:intron 35.0%
AAACTACCTGAAATAGTTCC+AGG + chr5.4:69835424-69835443 MS.gene057048:CDS 35.0%
AAAGTCAGTATGTATGGAAG+TGG - chr5.4:69834987-69835006 None:intergenic 35.0%
AACAACCAAGAACCATTAGT+AGG - chr5.4:69835462-69835481 None:intergenic 35.0%
ACAACCAAGAACCATTAGTA+GGG - chr5.4:69835461-69835480 None:intergenic 35.0%
AGCCTAATGTTGTCAAATAG+CGG - chr5.4:69834713-69834732 None:intergenic 35.0%
AGCTATATAGGCAATCAGAA+GGG - chr5.4:69832543-69832562 None:intergenic 35.0%
AGGCTGCAGAATCAAATTAA+GGG - chr5.4:69834273-69834292 None:intergenic 35.0%
ATAACCCTACTAATGGTTCT+TGG + chr5.4:69835454-69835473 MS.gene057048:CDS 35.0%
ATCTGAAGAACGAGCTATAT+AGG - chr5.4:69832555-69832574 None:intergenic 35.0%
ATTCTGTTCCTAGTTTGGAA+TGG + chr5.4:69834084-69834103 MS.gene057048:CDS 35.0%
CAAACTAGGAACAGAATAAG+TGG - chr5.4:69834081-69834100 None:intergenic 35.0%
CAACAGTTGAGATCTTCAAA+TGG + chr5.4:69834156-69834175 MS.gene057048:CDS 35.0%
CACTTATTCTGTTCCTAGTT+TGG + chr5.4:69834079-69834098 MS.gene057048:CDS 35.0%
CAGTAGGAGTTCAAATTTCA+TGG + chr5.4:69832246-69832265 MS.gene057048:CDS 35.0%
CCGTTTCTCTTAAATCAAAG+TGG + chr5.4:69832368-69832387 MS.gene057048:intron 35.0%
CTATATTAGACAGTTGCAAG+TGG + chr5.4:69833689-69833708 MS.gene057048:intron 35.0%
CTTTATTGGTGCAATTAACG+GGG + chr5.4:69832976-69832995 MS.gene057048:CDS 35.0%
GAAGACACCGGTAATAATTT+AGG + chr5.4:69832820-69832839 MS.gene057048:intron 35.0%
GAAGATCTCAACTGTTGTAA+TGG - chr5.4:69834153-69834172 None:intergenic 35.0%
GCAATTGCTACATCTTACAT+TGG + chr5.4:69834317-69834336 MS.gene057048:CDS 35.0%
GCGATAATTGGTATACTCAT+TGG - chr5.4:69833761-69833780 None:intergenic 35.0%
GGAACTAAAGTCAGTATGTA+TGG - chr5.4:69834993-69835012 None:intergenic 35.0%
GTTCTAGTAGTTGGAATCAT+CGG + chr5.4:69832998-69833017 MS.gene057048:CDS 35.0%
TAAGATGATAAGACACATGC+TGG - chr5.4:69834520-69834539 None:intergenic 35.0%
TAGGCTGCAGAATCAAATTA+AGG - chr5.4:69834274-69834293 None:intergenic 35.0%
TCAACATGCGTAACATAACA+CGG + chr5.4:69832319-69832338 MS.gene057048:intron 35.0%
TGCTCCAAATAAAGGCTAAT+AGG + chr5.4:69833294-69833313 MS.gene057048:intron 35.0%
TTATGCAGTGTTGTCAAATG+CGG + chr5.4:69834537-69834556 MS.gene057048:intron 35.0%
TTTGTCCGTTGTTCAAAGAT+TGG - chr5.4:69833819-69833838 None:intergenic 35.0%
! ACAAATGAGAGTGCGATAAT+TGG - chr5.4:69833773-69833792 None:intergenic 35.0%
! ATTAAGCATGCTAGAGGTAT+AGG - chr5.4:69834748-69834767 None:intergenic 35.0%
! CAATGTGATTTTGTTGCAGT+TGG + chr5.4:69832495-69832514 MS.gene057048:intron 35.0%
! CGCTTTATTGGTGCAATTAA+CGG + chr5.4:69832974-69832993 MS.gene057048:CDS 35.0%
! GAAAATTCGAGTTCGAATTC+AGG - chr5.4:69835237-69835256 None:intergenic 35.0%
! GCTTTATTGGTGCAATTAAC+GGG + chr5.4:69832975-69832994 MS.gene057048:CDS 35.0%
!! AAAGTATTGTCAGTTAGAGC+TGG - chr5.4:69832936-69832955 None:intergenic 35.0%
!! TGTAATGGATCTAATCCCAT+TGG - chr5.4:69834138-69834157 None:intergenic 35.0%
!! TTAAAAGAGCATCCAAATGC+AGG - chr5.4:69833718-69833737 None:intergenic 35.0%
!! TTTTGTTTAGGCGTCCTATA+TGG - chr5.4:69833213-69833232 None:intergenic 35.0%
AATCTGCTCAAATACCACTG+TGG + chr5.4:69834652-69834671 MS.gene057048:intron 40.0%
AGCCGCTATTTGACAACATT+AGG + chr5.4:69834708-69834727 MS.gene057048:intron 40.0%
AGGAAGGATAACCCTACTAA+TGG + chr5.4:69835447-69835466 MS.gene057048:CDS 40.0%
AGTGCAATAATACTAGGCAC+TGG + chr5.4:69834051-69834070 MS.gene057048:CDS 40.0%
ATATGTAGCCAGCGCTTTAT+TGG + chr5.4:69832962-69832981 MS.gene057048:intron 40.0%
ATATGTTCCAGCAAAGTCCA+AGG - chr5.4:69835060-69835079 None:intergenic 40.0%
CGTTTCTCTTTCATGCTACA+CGG + chr5.4:69833563-69833582 MS.gene057048:intron 40.0%
CTAATGGTTCTTGGTTGTTC+AGG + chr5.4:69835463-69835482 MS.gene057048:CDS 40.0%
CTCTAGTCTCTCACACATAA+TGG - chr5.4:69832889-69832908 None:intergenic 40.0%
GAGCTATATAGGCAATCAGA+AGG - chr5.4:69832544-69832563 None:intergenic 40.0%
GCAATAGTTAGGGTTACAGA+GGG + chr5.4:69832412-69832431 MS.gene057048:intron 40.0%
GGATAACACCATTCCAAACT+AGG - chr5.4:69834095-69834114 None:intergenic 40.0%
TAATTGCACCAATAAAGCGC+TGG - chr5.4:69832973-69832992 None:intergenic 40.0%
TACTGTCCCTAAAGTTCTTC+TGG - chr5.4:69832231-69832250 None:intergenic 40.0%
TCAAATACCACTGTGGTCTA+CGG + chr5.4:69834659-69834678 MS.gene057048:intron 40.0%
TGCAATAGTTAGGGTTACAG+AGG + chr5.4:69832411-69832430 MS.gene057048:intron 40.0%
TGCATGGAATCTGTTTCCAA+TGG + chr5.4:69833519-69833538 MS.gene057048:intron 40.0%
TGGAGATTAAGGAAGTTACC+TGG - chr5.4:69833799-69833818 None:intergenic 40.0%
TTAAGAGAAACGGGAACAAC+TGG - chr5.4:69832361-69832380 None:intergenic 40.0%
TTATTCCAGCTGCAATGTCT+TGG + chr5.4:69835368-69835387 MS.gene057048:CDS 40.0%
TTGAATGTAAGCACGTGCTT+CGG + chr5.4:69832856-69832875 MS.gene057048:intron 40.0%
TTGGACTTTGCTGGAACATA+TGG + chr5.4:69835059-69835078 MS.gene057048:CDS 40.0%
! AGAAGAACTTTAGGGACAGT+AGG + chr5.4:69832230-69832249 MS.gene057048:CDS 40.0%
! ATTAACGGGGTTCTAGTAGT+TGG + chr5.4:69832989-69833008 MS.gene057048:CDS 40.0%
! CTAGTTAGTGGCTTGTACAT+GGG - chr5.4:69832602-69832621 None:intergenic 40.0%
! TGCAGGAGTGCAATAATACT+AGG + chr5.4:69834045-69834064 MS.gene057048:intron 40.0%
! TTTAAAGCCTTGGACTTTGC+TGG + chr5.4:69835050-69835069 MS.gene057048:CDS 40.0%
! TTTGGAGGCATATGCTACTT+TGG + chr5.4:69832719-69832738 MS.gene057048:CDS 40.0%
!! AACTGTTGGTGACAATCCAA+TGG + chr5.4:69834119-69834138 MS.gene057048:CDS 40.0%
!! ACTGTTGGTGACAATCCAAT+GGG + chr5.4:69834120-69834139 MS.gene057048:CDS 40.0%
!! GTTTGGAATGGTGTTATCCT+AGG + chr5.4:69834096-69834115 MS.gene057048:CDS 40.0%
AGACAAACTCCGGATTCTCA+GGG - chr5.4:69835178-69835197 None:intergenic 45.0%
CATTGGAGCTGCTTGGAAAT+TGG - chr5.4:69833744-69833763 None:intergenic 45.0%
CCATGTACAAGCCACTAACT+AGG + chr5.4:69832600-69832619 MS.gene057048:intron 45.0%
CCCATCTGTAACCAAAATGC+CGG - chr5.4:69832673-69832692 None:intergenic 45.0%
CCTTAACCCTCCAGTTTCTT+GGG + chr5.4:69835144-69835163 MS.gene057048:intron 45.0%
CGCACTCTCATTTGTTTACC+AGG + chr5.4:69833778-69833797 MS.gene057048:CDS 45.0%
CTACCTGAAATAGTTCCAGG+AGG + chr5.4:69835427-69835446 MS.gene057048:CDS 45.0%
CTGAAATAGTTCCAGGAGGA+AGG + chr5.4:69835431-69835450 MS.gene057048:CDS 45.0%
CTGCAATGTCTTGGTCAGAT+AGG + chr5.4:69835377-69835396 MS.gene057048:CDS 45.0%
CTTAACCCTCCAGTTTCTTG+GGG + chr5.4:69835145-69835164 MS.gene057048:intron 45.0%
CTTCCTCCTGGAACTATTTC+AGG - chr5.4:69835433-69835452 None:intergenic 45.0%
CTTTGTCAGGAGGCTAATAC+CGG + chr5.4:69832651-69832670 MS.gene057048:intron 45.0%
GACTTTGCTGGAACATATGG+AGG + chr5.4:69835062-69835081 MS.gene057048:CDS 45.0%
GATTGTCACCAACAGTTCCT+AGG - chr5.4:69834116-69834135 None:intergenic 45.0%
GTATACTCATTGGAGCTGCT+TGG - chr5.4:69833751-69833770 None:intergenic 45.0%
GTGTTGTCAAATGCGGATAG+CGG + chr5.4:69834544-69834563 MS.gene057048:intron 45.0%
TAGACAAACTCCGGATTCTC+AGG - chr5.4:69835179-69835198 None:intergenic 45.0%
TCCTTAACCCTCCAGTTTCT+TGG + chr5.4:69835143-69835162 MS.gene057048:intron 45.0%
TGCAAGTGGAAACCTGCATT+TGG + chr5.4:69833703-69833722 MS.gene057048:CDS 45.0%
! CCTAGTTAGTGGCTTGTACA+TGG - chr5.4:69832603-69832622 None:intergenic 45.0%
! GGTGTTATCCTAGGAACTGT+TGG + chr5.4:69834105-69834124 MS.gene057048:CDS 45.0%
! TGTATGGAAGTGGCCTGTTT+TGG - chr5.4:69834977-69834996 None:intergenic 45.0%
!! ATGCGGATAGCGGAAAATAG+CGG + chr5.4:69834554-69834573 MS.gene057048:intron 45.0%
!! GAGGCATATGCTACTTTGGA+AGG + chr5.4:69832723-69832742 MS.gene057048:CDS 45.0%
!!! ACCGGCATTTTGGTTACAGA+TGG + chr5.4:69832669-69832688 MS.gene057048:intron 45.0%
!!! CCGGCATTTTGGTTACAGAT+GGG + chr5.4:69832670-69832689 MS.gene057048:intron 45.0%
!!! CTGATAGTGCTGCTGCTTTT+CGG + chr5.4:69835343-69835362 MS.gene057048:intron 45.0%
AACACGGCTTCATCAGAGCT+CGG + chr5.4:69832335-69832354 MS.gene057048:intron 50.0%
AGTAGGGTTATCCTTCCTCC+TGG - chr5.4:69835445-69835464 None:intergenic 50.0%
ATACCACTGTGGTCTACGGA+CGG + chr5.4:69834663-69834682 MS.gene057048:intron 50.0%
ATCTCCCAACAGGCCAAAAC+AGG + chr5.4:69834961-69834980 MS.gene057048:CDS 50.0%
CCCAAGAAACTGGAGGGTTA+AGG - chr5.4:69835147-69835166 None:intergenic 50.0%
TCCTTCCCCAAGAAACTGGA+GGG - chr5.4:69835153-69835172 None:intergenic 50.0%
TCTGACCAAGACATTGCAGC+TGG - chr5.4:69835376-69835395 None:intergenic 50.0%
TGACACTGACACGAAGACAC+CGG + chr5.4:69832808-69832827 MS.gene057048:intron 50.0%
TGCGCGATGAAGTTACTGCA+TGG + chr5.4:69833503-69833522 MS.gene057048:intron 50.0%
! AGGCAATCAGAAGGGCGTAA+TGG - chr5.4:69832535-69832554 None:intergenic 50.0%
! GGAGGCTAATACCGGCATTT+TGG + chr5.4:69832659-69832678 MS.gene057048:intron 50.0%
! TCAGTGCTGAATCTCCCAAC+AGG + chr5.4:69834951-69834970 MS.gene057048:intron 50.0%
!!! CGGCTTTTTTGCAGCTCTTG+TGG + chr5.4:69833018-69833037 MS.gene057048:CDS 50.0%
ACCCTCCAGTTTCTTGGGGA+AGG + chr5.4:69835149-69835168 MS.gene057048:intron 55.0%
ATACCGTCCGTAGACCACAG+TGG - chr5.4:69834669-69834688 None:intergenic 55.0%
CTCCAGTTTCTTGGGGAAGG+AGG + chr5.4:69835152-69835171 MS.gene057048:intron 55.0%
CTCCTTCCCCAAGAAACTGG+AGG - chr5.4:69835154-69835173 None:intergenic 55.0%
!!! AGTGGCCTGTTTTGGCCTGT+TGG - chr5.4:69834969-69834988 None:intergenic 55.0%
!!! GTGGCCTGTTTTGGCCTGTT+GGG - chr5.4:69834968-69834987 None:intergenic 55.0%
GGAAGGAGGCCCTGAGAATC+CGG + chr5.4:69835166-69835185 MS.gene057048:intron 60.0%
GGCCTCCTTCCCCAAGAAAC+TGG - chr5.4:69835157-69835176 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 69832224 69835531 69832224 ID=MS.gene057048
chr5.4 mRNA 69832224 69835531 69832224 ID=MS.gene057048.t1;Parent=MS.gene057048
chr5.4 exon 69832224 69832267 69832224 ID=MS.gene057048.t1.exon1;Parent=MS.gene057048.t1
chr5.4 CDS 69832224 69832267 69832224 ID=cds.MS.gene057048.t1;Parent=MS.gene057048.t1
chr5.4 exon 69832514 69832603 69832514 ID=MS.gene057048.t1.exon2;Parent=MS.gene057048.t1
chr5.4 CDS 69832514 69832603 69832514 ID=cds.MS.gene057048.t1;Parent=MS.gene057048.t1
chr5.4 exon 69832688 69832744 69832688 ID=MS.gene057048.t1.exon3;Parent=MS.gene057048.t1
chr5.4 CDS 69832688 69832744 69832688 ID=cds.MS.gene057048.t1;Parent=MS.gene057048.t1
chr5.4 exon 69832970 69833039 69832970 ID=MS.gene057048.t1.exon4;Parent=MS.gene057048.t1
chr5.4 CDS 69832970 69833039 69832970 ID=cds.MS.gene057048.t1;Parent=MS.gene057048.t1
chr5.4 exon 69833698 69833799 69833698 ID=MS.gene057048.t1.exon5;Parent=MS.gene057048.t1
chr5.4 CDS 69833698 69833799 69833698 ID=cds.MS.gene057048.t1;Parent=MS.gene057048.t1
chr5.4 exon 69833876 69833928 69833876 ID=MS.gene057048.t1.exon6;Parent=MS.gene057048.t1
chr5.4 CDS 69833876 69833928 69833876 ID=cds.MS.gene057048.t1;Parent=MS.gene057048.t1
chr5.4 exon 69834050 69834188 69834050 ID=MS.gene057048.t1.exon7;Parent=MS.gene057048.t1
chr5.4 CDS 69834050 69834188 69834050 ID=cds.MS.gene057048.t1;Parent=MS.gene057048.t1
chr5.4 exon 69834290 69834374 69834290 ID=MS.gene057048.t1.exon8;Parent=MS.gene057048.t1
chr5.4 CDS 69834290 69834374 69834290 ID=cds.MS.gene057048.t1;Parent=MS.gene057048.t1
chr5.4 exon 69834955 69835083 69834955 ID=MS.gene057048.t1.exon9;Parent=MS.gene057048.t1
chr5.4 CDS 69834955 69835083 69834955 ID=cds.MS.gene057048.t1;Parent=MS.gene057048.t1
chr5.4 exon 69835350 69835531 69835350 ID=MS.gene057048.t1.exon10;Parent=MS.gene057048.t1
chr5.4 CDS 69835350 69835531 69835350 ID=cds.MS.gene057048.t1;Parent=MS.gene057048.t1
Gene Sequence

>MS.gene057048

ATGGCCAGAAGAACTTTAGGGACAGTAGGAGTTCAAATTTCATGGTAAGTTCATTAATCATCTATGAAAATTTAATGCAAGCAAACTATTGGAAATCAACATGCGTAACATAACACGGCTTCATCAGAGCTCGGCCAGTTGTTCCCGTTTCTCTTAAATCAAAGTGGTTGATGTAGATTTTCAATTATGCAATAGTTAGGGTTACAGAGGGCTGCTGTACTTATCAGTGAATATGAGTCGTACGCAATTTTATTTTCTAAAACATATTTAACAATGTGATTTTGTTGCAGTTGGTCATACATCTTCATCCATTACGCCCTTCTGATTGCCTATATAGCTCGTTCTTCAGATATCTTGACGAATTTTCTTGGCATTCCCATGTACAAGCCACTAACTAGGCCTTAAATTATGTCTTAATTTTCATATACTTTGTCAGGAGGCTAATACCGGCATTTTGGTTACAGATGGGAAAGTGCAACTTTGTTTTCATTGATTTTTGGAGGCATATGCTACTTTGGAAGGTTTGTTTGTCTTTCTTCTTGCTTTCATGATCTAAATTTATCTTTTGTACATATCTGACACAGTGACACTGACACGAAGACACCGGTAATAATTTAGGAAAATAGAAGTGATTGAATGTAAGCACGTGCTTCGGTGTCATACCATTATGTGTGAGAGACTAGAGTTTGAGTGAAATTCATAATTACTTCCAGCTCTAACTGACAATACTTTATTGTGATATGTAGCCAGCGCTTTATTGGTGCAATTAACGGGGTTCTAGTAGTTGGAATCATCGGCTTTTTTGCAGCTCTTGTGGTAAGTTTTTCATGTCAAAATTATCAAATTTTCTGAAATGATTTTACTTTTATTTGAGCTATTTTCAAATTTTAAAATAGGTAATATTTGATTAATCATTTTGATTAGTAAACTTCATATGATCTTTGGTGTTCAAATTAATATGTTAGTCTGAAATCACAGATATATAGCCATATAGGACGCCTAAACAAAAATTAGACGTATTCGGATAACATGTTCTTATAAATGGCAGGATTAATAATGTTTAGATAACATGCTCCAAATAAAGGCTAATAGGATTCATAAACTAAATTTAGAACATGCAAAATCACAAATAACAAATGGATAACAGATTCATTATTGTAACATAAGCACAGACTTACACACAATAAACAATCTCAGGATATTATTTTGCAGTTTAACAGCTCATATTACACATTCACCAAATCAGATTGATTTAGATTAGACGTTTAATATTGGTCACTGCGCGATGAAGTTACTGCATGGAATCTGTTTCCAATGGATAACTTGTTTGAAATAAAATCGTTTCTCTTTCATGCTACACGGTTATTTTATTTTATACGATAATGAAATATTACATGGTTTATACGACTCAAAACAGTTATTTCTAAAGCATATTTTGTTCATGTTGAAACTAAGAATAATTTTTCTATATTAGACAGTTGCAAGTGGAAACCTGCATTTGGATGCTCTTTTAAAAGCCAATTTCCAAGCAGCTCCAATGAGTATACCAATTATCGCACTCTCATTTGTTTACCAGGTAACTTCCTTAATCTCCAATCTTTGAACAACGGACAAAATTTTATCTCTGATTATATTTATATATGCTTATTCAGAATGTGGTACCTGTTCTTTGTACAAATCTTGAAGGAGACTTGTTAAAAGTAAGGTGACAAATCTCATCTTTGTTCTTTGTTTGAATAATTGTTTTTGTTTTCTTCCATCATTTCAATTTTATCGACTATACACAAACAGTAAAATTAACACAAATGTTTTTTGTTTTGTTGCAGGAGTGCAATAATACTAGGCACTGGTATACCACTTATTCTGTTCCTAGTTTGGAATGGTGTTATCCTAGGAACTGTTGGTGACAATCCAATGGGATTAGATCCATTACAACAGTTGAGATCTTCAAATGGAACAATTGGAGTAAGTTTATGATAGCATCCTTTTTCTTTTAGCTACTACTGCCTTAAAGTTTCATGACTATTTATTAAATTTATTTTGTTGCCCTTAATTTGATTCTGCAGCCTATAGTTGAGATATTCTCACTGCTCGCAATTGCTACATCTTACATTGGATTTGTTTTGGGTTTGACAGACTTCCTTGCAGACTGTATGTATTATATTTTCCAATTTCTTTCTTATCTTTTGATTAAAGCTAATGCGGAAATCTGATCGAGTTATTTGATAAAGTACTAGAAACACACTATCTGTCTAACACACTATTATTGAACGAAATTCATGTGAGACGTAGTCCAGCATGTGTCTTATCATCTTATGCAGTGTTGTCAAATGCGGATAGCGGAAAATAGCGGTTTGTTCAAATTTTACTATGCTATAGCTTCTATTTGACAACAATTTGTAAAAAAAACATATTGCGGAACGATGGCAATCTGCTCAAATACCACTGTGGTCTACGGACGGTATAAGACTATCGTGTTGCTATAGCCGCTATTTGACAACATTAGGCTAATGTACTATCACCTATACCTCTAGCATGCTTAATAACTAAGTATGTTGCACATTTTAAAGACTAGGATAAACTGACATGAATCTACTGTAATTGCTACATTTGTTAAATTATTTTCTGAGTATATTTCACATGAACAATGCTTCATTTGTTGGTGTGAAACTTTTCATATATAAGAAGTATCTAAATGATACTATTATTGCTTCATTGTGTTTTTTTTCAGTGCTGAATCTCCCAACAGGCCAAAACAGGCCACTTCCATACATACTGACTTTAGTTCCACCACTTATACTCTCTTTATTGGACCCTGAAATATTTTTTAAAGCCTTGGACTTTGCTGGAACATATGGAGGTATATGTTAATGCTAATTTTTATTCCATTTCCATGTTAATTTTAGTTGCAATTTTTTTTCCTTAACCCTCCAGTTTCTTGGGGAAGGAGGCCCTGAGAATCCGGAGTTTGTCTATGAGATAAATAAACTTAGGCTAATGATTGTTTCAGCCTGAATTCGAACTCGAATTTTCCTAAACGATCCATTCTTAACTAAAGTTTAGGTACAATATATTTGTTTCTTGAAAACTTGGCAAGTTTTTCTCATATTTTCTTGTCACTGATAGTGCTGCTGCTTTTCGGAGTTATTCCAGCTGCAATGTCTTGGTCAGATAGGAACTCAAATTCAACTTCATCTGTGAAACTACCTGAAATAGTTCCAGGAGGAAGGATAACCCTACTAATGGTTCTTGGTTGTTCAGGATATGTTATTCTTTCTGAATTATTTGAGAACTTGCAGCACCTTTGA

Protein sequence

>MS.gene057048.t1

MARRTLGTVGVQISCWSYIFIHYALLIAYIARSSDILTNFLGIPIWESATLFSLIFGGICYFGSQRFIGAINGVLVVGIIGFFAALVTVASGNLHLDALLKANFQAAPMSIPIIALSFVYQNVVPVLCTNLEGDLLKVRSAIILGTGIPLILFLVWNGVILGTVGDNPMGLDPLQQLRSSNGTIGPIVEIFSLLAIATSYIGFVLGLTDFLADLLNLPTGQNRPLPYILTLVPPLILSLLDPEIFFKALDFAGTYGVLLLFGVIPAAMSWSDRNSNSTSSVKLPEIVPGGRITLLMVLGCSGYVILSELFENLQHL