Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49820.t1 | XP_013451542.1 | 96.6 | 882 | 28 | 1 | 1 | 880 | 1 | 882 | 0.00E+00 | 1672.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49820.t1 | A9LLI7 | 53.5 | 914 | 341 | 16 | 2 | 880 | 5 | 869 | 1.4e-247 | 857.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49820.t1 | A0A072UIC2 | 96.6 | 882 | 28 | 1 | 1 | 880 | 1 | 882 | 0.0e+00 | 1672.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene050621 | MS.gene49820 | PPI |
MS.gene025936 | MS.gene49820 | PPI |
MS.gene22822 | MS.gene49820 | PPI |
MS.gene024471 | MS.gene49820 | PPI |
MS.gene058069 | MS.gene49820 | PPI |
MS.gene21793 | MS.gene49820 | PPI |
MS.gene024821 | MS.gene49820 | PPI |
MS.gene40494 | MS.gene49820 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49820.t1 | MTR_6g027760 | 96.599 | 882 | 28 | 1 | 1 | 880 | 1 | 882 | 0.0 | 1774 |
MS.gene49820.t1 | MTR_6g027760 | 97.179 | 638 | 16 | 1 | 1 | 636 | 1 | 638 | 0.0 | 1298 |
MS.gene49820.t1 | MTR_7g086370 | 52.804 | 731 | 282 | 12 | 30 | 743 | 8 | 692 | 0.0 | 707 |
MS.gene49820.t1 | MTR_7g086370 | 58.172 | 569 | 194 | 8 | 30 | 588 | 8 | 542 | 0.0 | 667 |
MS.gene49820.t1 | MTR_7g086370 | 58.672 | 467 | 151 | 7 | 26 | 484 | 4 | 436 | 0.0 | 553 |
MS.gene49820.t1 | MTR_4g048230 | 36.207 | 348 | 202 | 8 | 194 | 524 | 49 | 393 | 3.16e-56 | 209 |
MS.gene49820.t1 | MTR_4g048230 | 36.207 | 348 | 202 | 8 | 194 | 524 | 49 | 393 | 3.63e-56 | 209 |
MS.gene49820.t1 | MTR_7g087760 | 61.165 | 103 | 37 | 2 | 182 | 281 | 32 | 134 | 5.32e-32 | 126 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49820.t1 | AT5G35910 | 53.821 | 916 | 335 | 17 | 2 | 880 | 5 | 869 | 0.0 | 897 |
MS.gene49820.t1 | AT1G54440 | 58.812 | 522 | 165 | 7 | 159 | 679 | 18 | 490 | 0.0 | 615 |
MS.gene49820.t1 | AT1G54440 | 57.786 | 533 | 206 | 6 | 159 | 679 | 18 | 543 | 0.0 | 613 |
MS.gene49820.t1 | AT1G54440 | 68.116 | 414 | 129 | 2 | 159 | 571 | 18 | 429 | 0.0 | 612 |
MS.gene49820.t1 | AT1G54440 | 68.116 | 414 | 129 | 2 | 159 | 571 | 18 | 429 | 0.0 | 610 |
MS.gene49820.t1 | AT1G54440 | 68.116 | 414 | 129 | 2 | 159 | 571 | 18 | 429 | 0.0 | 608 |
MS.gene49820.t1 | AT2G32415 | 44.558 | 294 | 136 | 8 | 251 | 524 | 112 | 398 | 9.52e-60 | 220 |
MS.gene49820.t1 | AT2G32415 | 44.330 | 291 | 140 | 7 | 251 | 524 | 112 | 397 | 2.25e-59 | 218 |
MS.gene49820.t1 | AT2G32415 | 44.330 | 291 | 140 | 7 | 251 | 524 | 112 | 397 | 3.25e-59 | 218 |
Find 221 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCATATTGGGCCCCATTTA+AGG | 0.102573 | 6.3:-19584629 | MS.gene49820:CDS |
GATGGATTTGAGATGGTTTA+TGG | 0.145469 | 6.3:-19587003 | MS.gene49820:CDS |
CCTTGAAGACTTCCCTTAAA+TGG | 0.178270 | 6.3:+19584616 | None:intergenic |
AACTCATACCTTCATATATA+TGG | 0.183702 | 6.3:-19581728 | MS.gene49820:CDS |
CGGCACGACCATCGCAATTC+TGG | 0.198837 | 6.3:+19579151 | None:intergenic |
AACCTTTGGGTTCTGCGTTT+GGG | 0.220277 | 6.3:+19580224 | None:intergenic |
CAACCTTTGGGTTCTGCGTT+TGG | 0.231182 | 6.3:+19580223 | None:intergenic |
GGCTTCAAAGGTGTTAAAAT+TGG | 0.240848 | 6.3:-19584145 | MS.gene49820:CDS |
TGGCGCACTCTCTACATTAA+AGG | 0.249593 | 6.3:-19579992 | MS.gene49820:intron |
CCAGGAAAAGCTATCTGTTT+TGG | 0.250155 | 6.3:-19585564 | MS.gene49820:intron |
TTGAAATATATAGGTTGATT+TGG | 0.252839 | 6.3:-19584748 | MS.gene49820:intron |
TTGAAACTCCGCATTCATAT+TGG | 0.281478 | 6.3:-19584642 | MS.gene49820:CDS |
AGCTCAGATGTGACATTATT+GGG | 0.284320 | 6.3:+19580063 | None:intergenic |
GAGCTCAGATGTGACATTAT+TGG | 0.284368 | 6.3:+19580062 | None:intergenic |
CGAGCAGCATTTCCTGCTTC+CGG | 0.288502 | 6.3:-19579036 | MS.gene49820:CDS |
GAAGCTTGCCCTTGATAAAA+AGG | 0.300623 | 6.3:-19579801 | MS.gene49820:intron |
CTACCTTGTTGAAATTGTTT+AGG | 0.309737 | 6.3:+19579063 | None:intergenic |
AGGGAAGGTGGTAGGGGTGG+AGG | 0.310885 | 6.3:-19586959 | MS.gene49820:CDS |
GCCACCTGCGTCCTCTTTCT+CGG | 0.337720 | 6.3:+19579131 | None:intergenic |
TGAAACTCCGCATTCATATT+GGG | 0.339548 | 6.3:-19584641 | MS.gene49820:CDS |
GGTGGTAGGGGTGGAGGATT+CGG | 0.341403 | 6.3:-19586953 | MS.gene49820:CDS |
AGAAGAAGTCAAAGATTTGA+AGG | 0.347233 | 6.3:-19585465 | MS.gene49820:CDS |
AAGAAGAAGAAAGGTGGGAG+AGG | 0.349770 | 6.3:-19586979 | MS.gene49820:CDS |
GAGCAGCATTTCCTGCTTCC+GGG | 0.356072 | 6.3:-19579035 | MS.gene49820:CDS |
GGGTTCTGCGTTTGGGGTGC+AGG | 0.357268 | 6.3:+19580231 | None:intergenic |
GCAATGAACCATGTGAAGTT+TGG | 0.359777 | 6.3:-19579198 | MS.gene49820:CDS |
AACAATTTCAACAAGGTAGA+AGG | 0.361242 | 6.3:-19579059 | MS.gene49820:CDS |
GCTTCGAATTCGCCATTTCC+TGG | 0.363155 | 6.3:-19587189 | MS.gene49820:CDS |
TGGGAGAGGGAAGGTGGTAG+GGG | 0.365289 | 6.3:-19586965 | MS.gene49820:CDS |
ATGGATTTGAGATGGTTTAT+GGG | 0.370997 | 6.3:-19587002 | MS.gene49820:CDS |
GAATGTGAATGATGACGTTT+TGG | 0.378867 | 6.3:-19587136 | MS.gene49820:CDS |
CTTGAAGACTTCCCTTAAAT+GGG | 0.379705 | 6.3:+19584617 | None:intergenic |
AACGGGAATGGGAGAGTGAA+TGG | 0.380317 | 6.3:-19587048 | MS.gene49820:CDS |
GAGAGGGAAGGTGGTAGGGG+TGG | 0.380394 | 6.3:-19586962 | MS.gene49820:CDS |
TTGTGCAGGTTGCAAGGGGC+TGG | 0.383702 | 6.3:-19581519 | MS.gene49820:intron |
GTGGGAGAGGGAAGGTGGTA+GGG | 0.386181 | 6.3:-19586966 | MS.gene49820:CDS |
GTAACCTCCAATCAGCATTC+TGG | 0.388706 | 6.3:+19583959 | None:intergenic |
TCCAGATTGTGTTCAAGATA+TGG | 0.396042 | 6.3:+19581100 | None:intergenic |
CAAGCTTCCTCTTTGAAGCT+GGG | 0.398298 | 6.3:+19579816 | None:intergenic |
GAATGTTGCACTGCGATTCC+CGG | 0.399481 | 6.3:+19579017 | None:intergenic |
TCAACAGCTTGCCATTGTTT+CGG | 0.400022 | 6.3:-19581487 | MS.gene49820:intron |
AATAAAACTGTTCTTGAAAT+CGG | 0.401112 | 6.3:-19581279 | MS.gene49820:intron |
AAGTGCGGCGGTTGCGGTGG+TGG | 0.403423 | 6.3:+19587383 | None:intergenic |
GGTTTGAAGTGCGGCGGTTG+CGG | 0.404759 | 6.3:+19587377 | None:intergenic |
GCAAGCTTCCTCTTTGAAGC+TGG | 0.404786 | 6.3:+19579815 | None:intergenic |
TCCATATCTTGAACACAATC+TGG | 0.411490 | 6.3:-19581101 | MS.gene49820:CDS |
ATTGCTGCTTCATAATCATA+TGG | 0.412607 | 6.3:+19579216 | None:intergenic |
CACGCGAGATTTCATCGATT+GGG | 0.412659 | 6.3:+19587244 | None:intergenic |
GGTTGCAGGGGCTGTGTGAA+TGG | 0.419015 | 6.3:-19581353 | MS.gene49820:intron |
GCAGGATCTTCAGTCGTAAC+AGG | 0.420549 | 6.3:+19580249 | None:intergenic |
GGTGGAGGATTCGGAGATTA+CGG | 0.426913 | 6.3:-19586944 | MS.gene49820:CDS |
GGTGGGAGAGGGAAGGTGGT+AGG | 0.428402 | 6.3:-19586967 | MS.gene49820:CDS |
CCATTTAAGGGAAGTCTTCA+AGG | 0.428556 | 6.3:-19584616 | MS.gene49820:CDS |
TGCAACCAAACATGCTCAAA+AGG | 0.433863 | 6.3:+19586790 | None:intergenic |
ATCTTGATGATGGTTATGAT+TGG | 0.435150 | 6.3:-19587164 | MS.gene49820:CDS |
TCATATTGGGCCCCATTTAA+GGG | 0.437250 | 6.3:-19584628 | MS.gene49820:CDS |
CTTAACATCTCATCAGGAAT+CGG | 0.441444 | 6.3:+19583934 | None:intergenic |
GAAAGGTGGGAGAGGGAAGG+TGG | 0.442833 | 6.3:-19586971 | MS.gene49820:CDS |
AGAAGAAGAAAGGTGGGAGA+GGG | 0.448193 | 6.3:-19586978 | MS.gene49820:CDS |
GCGTTCTGTTAATGAATTTG+CGG | 0.451542 | 6.3:-19585426 | MS.gene49820:intron |
CTTCTTCTACAAGCTTGAAA+GGG | 0.452246 | 6.3:+19585480 | None:intergenic |
GTGGAAGCTGGACCAGAAAC+AGG | 0.453822 | 6.3:+19579495 | None:intergenic |
CGTAGCTTGTTTGTAGTGAC+AGG | 0.454362 | 6.3:+19581145 | None:intergenic |
GGCACGACCATCGCAATTCT+GGG | 0.454889 | 6.3:+19579152 | None:intergenic |
TTGTACCTTAACATCTCATC+AGG | 0.456048 | 6.3:+19583928 | None:intergenic |
CAGATAGTGTGTATCTTCTC+TGG | 0.459641 | 6.3:+19582233 | None:intergenic |
CGATTCCTGATGAGATGTTA+AGG | 0.462250 | 6.3:-19583933 | MS.gene49820:intron |
TCTAGAGCGGATGTGGAAGC+TGG | 0.464126 | 6.3:+19579483 | None:intergenic |
ACTCATACCTTCATATATAT+GGG | 0.465497 | 6.3:-19581727 | MS.gene49820:intron |
GAAAGGGGTGCTTTCTAATG+AGG | 0.466368 | 6.3:+19585496 | None:intergenic |
TTGATCGTGATCGACGTTCA+TGG | 0.467370 | 6.3:+19587416 | None:intergenic |
ATTTGGAGCATAATCAATAT+CGG | 0.467524 | 6.3:-19584731 | MS.gene49820:CDS |
AGGAGGCAAAGAACGGGAAT+GGG | 0.469042 | 6.3:-19587059 | MS.gene49820:CDS |
TTGCTTTGTTTAGGCTTCAA+AGG | 0.471995 | 6.3:-19584157 | MS.gene49820:intron |
ATGAATTTCGCGAGTATCGA+AGG | 0.477753 | 6.3:-19587092 | MS.gene49820:CDS |
ATCCCTAGTCTGCTCTGAAA+TGG | 0.478916 | 6.3:+19580023 | None:intergenic |
GAGGAGGCAAAGAACGGGAA+TGG | 0.481926 | 6.3:-19587060 | MS.gene49820:CDS |
ACATTAGGAGTTTCTACTAC+AGG | 0.482202 | 6.3:+19579534 | None:intergenic |
TGTATCACTAACCTTCCTCT+TGG | 0.483024 | 6.3:+19584587 | None:intergenic |
TCATCAAGATCACCAGGAAA+TGG | 0.483073 | 6.3:+19587177 | None:intergenic |
CACTGATACAGGTGCGGACG+AGG | 0.483682 | 6.3:-19579442 | MS.gene49820:CDS |
TACAGGTGCGGACGAGGATG+TGG | 0.483734 | 6.3:-19579436 | MS.gene49820:CDS |
AAAGATAAGAGGGCGGTTGG+AGG | 0.486512 | 6.3:-19586895 | MS.gene49820:CDS |
TTGAAGTGCGGCGGTTGCGG+TGG | 0.486632 | 6.3:+19587380 | None:intergenic |
ATGGGAAGAAGAAGAAAGGT+GGG | 0.487754 | 6.3:-19586984 | MS.gene49820:CDS |
TACGGTGGCCGAGGGTGTAA+AGG | 0.488798 | 6.3:-19586926 | MS.gene49820:CDS |
TTCGGAGATTACGGTGGCCG+AGG | 0.489048 | 6.3:-19586935 | MS.gene49820:CDS |
CATCGCCACCTTTACACCCT+CGG | 0.489656 | 6.3:+19586918 | None:intergenic |
AATCTCATCTAGAGCGGATG+TGG | 0.492564 | 6.3:+19579476 | None:intergenic |
TTTCCTGGTGATCTTGATGA+TGG | 0.493798 | 6.3:-19587174 | MS.gene49820:CDS |
ACCTTTGGGTTCTGCGTTTG+GGG | 0.494577 | 6.3:+19580225 | None:intergenic |
CAATCCATGCTTGAAGCAAT+CGG | 0.495693 | 6.3:-19587216 | MS.gene49820:CDS |
ACTTCTTCTACAAGCTTGAA+AGG | 0.498506 | 6.3:+19585479 | None:intergenic |
GAGAAGAGGAGGCAAAGAAC+GGG | 0.498619 | 6.3:-19587065 | MS.gene49820:CDS |
GAAGAAAGGTGGGAGAGGGA+AGG | 0.499296 | 6.3:-19586974 | MS.gene49820:CDS |
AAAGCCAAAGAAAACTGAAC+AGG | 0.499893 | 6.3:-19579262 | MS.gene49820:CDS |
GCAGAAGTTTGTTCATCCAT+TGG | 0.502726 | 6.3:-19586752 | MS.gene49820:intron |
AGAGGAGTATCAGAACTTTC+AGG | 0.505570 | 6.3:+19582159 | None:intergenic |
GAGGCAATGATGGTGGATGA+TGG | 0.505739 | 6.3:-19587021 | MS.gene49820:CDS |
CCAGATACCAGAATGCTGAT+TGG | 0.506325 | 6.3:-19583966 | MS.gene49820:intron |
AAATGGTGAGACTTTCCCTT+GGG | 0.506396 | 6.3:+19580040 | None:intergenic |
GTGTGGCTTCAACGAGACTT+TGG | 0.507802 | 6.3:-19584462 | MS.gene49820:CDS |
TACAAACAAGCTACGGCGAT+TGG | 0.509048 | 6.3:-19581137 | MS.gene49820:CDS |
TCAGAACTTTCAGGTGCCAT+TGG | 0.509715 | 6.3:+19582168 | None:intergenic |
ATAATGCTAGACACTGATAC+AGG | 0.509889 | 6.3:-19579453 | MS.gene49820:CDS |
TAAGAGGGCGGTTGGAGGGA+AGG | 0.511174 | 6.3:-19586890 | MS.gene49820:CDS |
CGTGCAGAGGATGAGAGTAC+TGG | 0.511264 | 6.3:-19581315 | MS.gene49820:CDS |
TTGAGCATGTTTGGTTGCAG+AGG | 0.511268 | 6.3:-19586786 | MS.gene49820:CDS |
AGAAAACCCCACCGAGGAGA+TGG | 0.512515 | 6.3:-19579397 | MS.gene49820:CDS |
AAGATAAGAGGGCGGTTGGA+GGG | 0.513138 | 6.3:-19586894 | MS.gene49820:CDS |
CAGACTAGGGATGCAAATGT+TGG | 0.517351 | 6.3:-19580012 | MS.gene49820:CDS |
TGAAAGTTCTGATACTCCTC+TGG | 0.517597 | 6.3:-19582157 | MS.gene49820:CDS |
ACGGGAATGGGAGAGTGAAT+GGG | 0.517843 | 6.3:-19587047 | MS.gene49820:CDS |
TCACGCGAGATTTCATCGAT+TGG | 0.517911 | 6.3:+19587243 | None:intergenic |
TCACCATTTCAGAGCAGACT+AGG | 0.519614 | 6.3:-19580026 | MS.gene49820:CDS |
TAACTTATGTTCCTTGCCAA+TGG | 0.520702 | 6.3:-19582184 | MS.gene49820:CDS |
TAATATGTTTGACACTGGCC+AGG | 0.521267 | 6.3:-19584427 | MS.gene49820:intron |
GCACTGCGATTCCCGGAAGC+AGG | 0.521367 | 6.3:+19579024 | None:intergenic |
GCACTTCAAACCCTTGCCTC+CGG | 0.522978 | 6.3:-19587366 | MS.gene49820:CDS |
TCACTAACCTTCCTCTTGGA+AGG | 0.523807 | 6.3:+19584591 | None:intergenic |
TTAACATCTCATCAGGAATC+GGG | 0.524383 | 6.3:+19583935 | None:intergenic |
CGAGAGTGGACCGGAGGCAA+GGG | 0.524413 | 6.3:+19587356 | None:intergenic |
TGGGAGAGTGAATGGGAATG+AGG | 0.525813 | 6.3:-19587040 | MS.gene49820:CDS |
GTTTGAATTCGTTGAAATTG+CGG | 0.525907 | 6.3:+19587268 | None:intergenic |
AAGAAGAAATCTCTCTCCGA+TGG | 0.527652 | 6.3:+19587294 | None:intergenic |
TAAATTAAACAGGTTATGCA+TGG | 0.528172 | 6.3:-19584501 | MS.gene49820:intron |
TTCTGATACTCCTCTGGTAG+AGG | 0.529021 | 6.3:-19582151 | MS.gene49820:intron |
ATGAAAGATAAGAGGGCGGT+TGG | 0.529366 | 6.3:-19586898 | MS.gene49820:CDS |
CGATGGTCGTGCCGAGAAAG+AGG | 0.529789 | 6.3:-19579142 | MS.gene49820:CDS |
TGGTTGCAGAGGAGTGATGA+TGG | 0.533011 | 6.3:-19586775 | MS.gene49820:CDS |
AATCAATATCGGTCTTTCCA+AGG | 0.533016 | 6.3:-19584720 | MS.gene49820:CDS |
AGGTGGCGATGAAAGATAAG+AGG | 0.533401 | 6.3:-19586906 | MS.gene49820:CDS |
GAATGGGAATGAGGCAATGA+TGG | 0.536658 | 6.3:-19587031 | MS.gene49820:CDS |
CCATCGCAATTCTGGGAGGA+TGG | 0.537077 | 6.3:+19579159 | None:intergenic |
GGTGGATGATGGATTTGAGA+TGG | 0.538645 | 6.3:-19587010 | MS.gene49820:CDS |
GAGTGCCTCAACTTCGGATG+AGG | 0.538923 | 6.3:-19579364 | MS.gene49820:CDS |
AGTCAAAGATTTGAAGGAGA+TGG | 0.540945 | 6.3:-19585459 | MS.gene49820:CDS |
AATTGTTTAGGCAAATCACT+TGG | 0.544341 | 6.3:+19579075 | None:intergenic |
AAGAAGAAGCGTTCAACGAT+AGG | 0.546184 | 6.3:-19579108 | MS.gene49820:CDS |
GCATCAAGCAAGTCAAACCT+TGG | 0.548236 | 6.3:+19584703 | None:intergenic |
ACGAGAGTGGACCGGAGGCA+AGG | 0.549644 | 6.3:+19587355 | None:intergenic |
ACCGACTATTCGAAGGCCGC+AGG | 0.554849 | 6.3:-19586848 | MS.gene49820:CDS |
CGAATAGTCGGTATATGAAA+CGG | 0.556737 | 6.3:+19586859 | None:intergenic |
GGCGGTTGGAGGGAAGGCGA+AGG | 0.557044 | 6.3:-19586884 | MS.gene49820:CDS |
TACTGATGACGAGAGTGGAC+CGG | 0.562103 | 6.3:+19587347 | None:intergenic |
CGAGAAGAGGAGGCAAAGAA+CGG | 0.563042 | 6.3:-19587066 | MS.gene49820:CDS |
GAAATGGTGAGACTTTCCCT+TGG | 0.563297 | 6.3:+19580039 | None:intergenic |
GTATCGAAGGATTCGAGAAG+AGG | 0.564200 | 6.3:-19587079 | MS.gene49820:CDS |
GTTGCGGTGGTGGTGTGCGG+TGG | 0.565208 | 6.3:+19587393 | None:intergenic |
GCGGTTGCGGTGGTGGTGTG+CGG | 0.565723 | 6.3:+19587390 | None:intergenic |
TCCTGCGGCCTTCGAATAGT+CGG | 0.565845 | 6.3:+19586847 | None:intergenic |
GCTGCTCAACAGTTGAAAGA+AGG | 0.567354 | 6.3:-19581022 | MS.gene49820:CDS |
AGACGAACCCATATATATGA+AGG | 0.567693 | 6.3:+19581720 | None:intergenic |
GGGAAATGGAGCTACTGTCC+AGG | 0.568280 | 6.3:-19579882 | MS.gene49820:CDS |
CAAGGACCCTTCCAAGAGGA+AGG | 0.568861 | 6.3:-19584598 | MS.gene49820:intron |
TGGGAATGAGGCAATGATGG+TGG | 0.570048 | 6.3:-19587028 | MS.gene49820:CDS |
CCACCCGTAAATGAATGAAA+AGG | 0.573299 | 6.3:+19579573 | None:intergenic |
GGCAAGGGTTTGAAGTGCGG+CGG | 0.576256 | 6.3:+19587371 | None:intergenic |
ACTTTCAGGTGCCATTGGCA+AGG | 0.576608 | 6.3:+19582173 | None:intergenic |
TATGGGAAGAAGAAGAAAGG+TGG | 0.578035 | 6.3:-19586985 | MS.gene49820:CDS |
CTCATCCTCATCCGAAGTTG+AGG | 0.581884 | 6.3:+19579359 | None:intergenic |
AAAGGGGTGCTTTCTAATGA+GGG | 0.581990 | 6.3:+19585497 | None:intergenic |
GTTTATGGGAAGAAGAAGAA+AGG | 0.582971 | 6.3:-19586988 | MS.gene49820:CDS |
GGATGAGCCTAAGTCTCTCT+CGG | 0.587200 | 6.3:-19579343 | MS.gene49820:CDS |
GATACCAGAATGCTGATTGG+AGG | 0.587454 | 6.3:-19583963 | MS.gene49820:CDS |
CTGTCACTACAAACAAGCTA+CGG | 0.589432 | 6.3:-19581144 | MS.gene49820:CDS |
CACTAACCTTCCTCTTGGAA+GGG | 0.590411 | 6.3:+19584592 | None:intergenic |
TCATCCGAAGTTGAGGCACT+CGG | 0.591255 | 6.3:+19579366 | None:intergenic |
TTCATATACCGACTATTCGA+AGG | 0.592246 | 6.3:-19586855 | MS.gene49820:CDS |
ATGTCACATCTGAGCTCCCA+AGG | 0.593539 | 6.3:-19580056 | MS.gene49820:CDS |
GTTTGTAATATGTTTGACAC+TGG | 0.593699 | 6.3:-19584432 | MS.gene49820:CDS |
CACCATTTCAGAGCAGACTA+GGG | 0.595124 | 6.3:-19580025 | MS.gene49820:CDS |
TAACCATCATCAAGATCACC+AGG | 0.595832 | 6.3:+19587171 | None:intergenic |
TCGAAGGATTCGAGAAGAGG+AGG | 0.596007 | 6.3:-19587076 | MS.gene49820:CDS |
ACAGAAACTCACCGAAACAA+TGG | 0.600974 | 6.3:+19581476 | None:intergenic |
TTCTTCTACAAGCTTGAAAG+GGG | 0.601284 | 6.3:+19585481 | None:intergenic |
GGTTGCAGAGGAGTGATGAT+GGG | 0.602552 | 6.3:-19586774 | MS.gene49820:CDS |
AAATCCGAGTGCCTCAACTT+CGG | 0.604029 | 6.3:-19579370 | MS.gene49820:CDS |
TACACCGATTGCTTCAAGCA+TGG | 0.604772 | 6.3:+19587212 | None:intergenic |
AGTGCCCCAAAAGCACCACC+AGG | 0.606319 | 6.3:+19579848 | None:intergenic |
TCGGAGATTACGGTGGCCGA+GGG | 0.608587 | 6.3:-19586934 | MS.gene49820:CDS |
GGAGGCAAGGGTTTGAAGTG+CGG | 0.610464 | 6.3:+19587368 | None:intergenic |
TTCTTCACGCTGTATCCCAT+CGG | 0.612000 | 6.3:-19587310 | MS.gene49820:CDS |
TGGGATACAGCGTGAAGAAG+CGG | 0.613295 | 6.3:+19587314 | None:intergenic |
CCATCCTCCCAGAATTGCGA+TGG | 0.614689 | 6.3:-19579159 | MS.gene49820:CDS |
AGAAGAAATCTCTCTCCGAT+GGG | 0.614993 | 6.3:+19587295 | None:intergenic |
AAGAAAACTGAACAGGCTAG+TGG | 0.615396 | 6.3:-19579255 | MS.gene49820:CDS |
AGGGGTGCTTTCTAATGAGG+GGG | 0.618101 | 6.3:+19585499 | None:intergenic |
GACAGTTCCGAGAGAGACTT+AGG | 0.625849 | 6.3:+19579336 | None:intergenic |
AAGCGTTCAACGATAGGAGA+GGG | 0.625904 | 6.3:-19579102 | MS.gene49820:CDS |
GAAGCTACTGATGACGAGAG+TGG | 0.626041 | 6.3:+19587342 | None:intergenic |
TTGAAGACTTCCCTTAAATG+GGG | 0.630407 | 6.3:+19584618 | None:intergenic |
GGTGGCCGAGGGTGTAAAGG+TGG | 0.633133 | 6.3:-19586923 | MS.gene49820:CDS |
GAAGCGTTCAACGATAGGAG+AGG | 0.642542 | 6.3:-19579103 | MS.gene49820:CDS |
TAAGTAGTTACCTCTACCAG+AGG | 0.644023 | 6.3:+19582141 | None:intergenic |
ACCCCAAACGCAGAACCCAA+AGG | 0.644205 | 6.3:-19580226 | MS.gene49820:intron |
GGTGGCGATGAAAGATAAGA+GGG | 0.645361 | 6.3:-19586905 | MS.gene49820:CDS |
TGTATATATATGATACAATG+AGG | 0.648459 | 6.3:-19582209 | MS.gene49820:CDS |
TAAACAGGTTATGCATGGTG+CGG | 0.651251 | 6.3:-19584496 | MS.gene49820:intron |
CATTATAATCTCATCTAGAG+CGG | 0.655764 | 6.3:+19579470 | None:intergenic |
AAGGGGTGCTTTCTAATGAG+GGG | 0.656030 | 6.3:+19585498 | None:intergenic |
GAAAATACTACTTACTGTGG+TGG | 0.658324 | 6.3:+19580994 | None:intergenic |
GCCGAGAAAGAGGACGCAGG+TGG | 0.660476 | 6.3:-19579132 | MS.gene49820:CDS |
TGACATTGTTGCTCGTGCAG+AGG | 0.662978 | 6.3:-19581328 | MS.gene49820:CDS |
TGGGGAACCCAGCTTCAAAG+AGG | 0.664226 | 6.3:-19579823 | MS.gene49820:CDS |
CTGAATTGAATGTCTGATGA+CGG | 0.666376 | 6.3:+19581066 | None:intergenic |
GCTTGATGCAAATATCAACA+AGG | 0.677925 | 6.3:-19584689 | MS.gene49820:CDS |
GGGGTGCTTTCTAATGAGGG+GGG | 0.685045 | 6.3:+19585500 | None:intergenic |
CGTGCCGAGAAAGAGGACGC+AGG | 0.685389 | 6.3:-19579135 | MS.gene49820:CDS |
TTGCCTAAACAATTTCAACA+AGG | 0.687999 | 6.3:-19579066 | MS.gene49820:CDS |
GGAGGATTCGGAGATTACGG+TGG | 0.691346 | 6.3:-19586941 | MS.gene49820:CDS |
TGTCACATCTGAGCTCCCAA+GGG | 0.692775 | 6.3:-19580055 | MS.gene49820:CDS |
TGATGACGAGAGTGGACCGG+AGG | 0.694065 | 6.3:+19587350 | None:intergenic |
AATGGGGCCCAATATGAATG+CGG | 0.696608 | 6.3:+19584634 | None:intergenic |
ATTATACTAAACTCATCCTG+CGG | 0.699046 | 6.3:+19586832 | None:intergenic |
TCTTCAAGGACCCTTCCAAG+AGG | 0.704988 | 6.3:-19584602 | MS.gene49820:CDS |
GCTAGACACTGATACAGGTG+CGG | 0.712316 | 6.3:-19579448 | MS.gene49820:CDS |
GGCGATGAAAGATAAGAGGG+CGG | 0.714073 | 6.3:-19586902 | MS.gene49820:CDS |
ACGACCATCGCAATTCTGGG+AGG | 0.726102 | 6.3:+19579155 | None:intergenic |
GTGCGGATAAAGATATTGTG+TGG | 0.752716 | 6.3:-19584479 | MS.gene49820:CDS |
TAACCTAGAAAACCCCACCG+AGG | 0.773655 | 6.3:-19579403 | MS.gene49820:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 19579011 | 19587436 | 19579011 | ID=MS.gene49820 |
chr6.3 | mRNA | 19579011 | 19587436 | 19579011 | ID=MS.gene49820.t1;Parent=MS.gene49820 |
chr6.3 | exon | 19586753 | 19587436 | 19586753 | ID=MS.gene49820.t1.exon1;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19586753 | 19587436 | 19586753 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19585427 | 19585582 | 19585427 | ID=MS.gene49820.t1.exon2;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19585427 | 19585582 | 19585427 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19584599 | 19584757 | 19584599 | ID=MS.gene49820.t1.exon3;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19584599 | 19584757 | 19584599 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19584428 | 19584511 | 19584428 | ID=MS.gene49820.t1.exon4;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19584428 | 19584511 | 19584428 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19584087 | 19584166 | 19584087 | ID=MS.gene49820.t1.exon5;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19584087 | 19584166 | 19584087 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19583934 | 19583984 | 19583934 | ID=MS.gene49820.t1.exon6;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19583934 | 19583984 | 19583934 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19582152 | 19582260 | 19582152 | ID=MS.gene49820.t1.exon7;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19582152 | 19582260 | 19582152 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19581728 | 19581810 | 19581728 | ID=MS.gene49820.t1.exon8;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19581728 | 19581810 | 19581728 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19581488 | 19581533 | 19581488 | ID=MS.gene49820.t1.exon9;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19581488 | 19581533 | 19581488 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19581280 | 19581367 | 19581280 | ID=MS.gene49820.t1.exon10;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19581280 | 19581367 | 19581280 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19581009 | 19581178 | 19581009 | ID=MS.gene49820.t1.exon11;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19581009 | 19581178 | 19581009 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19580227 | 19580286 | 19580227 | ID=MS.gene49820.t1.exon12;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19580227 | 19580286 | 19580227 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19579993 | 19580130 | 19579993 | ID=MS.gene49820.t1.exon13;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19579993 | 19580130 | 19579993 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19579802 | 19579903 | 19579802 | ID=MS.gene49820.t1.exon14;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19579802 | 19579903 | 19579802 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
chr6.3 | exon | 19579011 | 19579643 | 19579011 | ID=MS.gene49820.t1.exon15;Parent=MS.gene49820.t1 |
chr6.3 | CDS | 19579011 | 19579643 | 19579011 | ID=cds.MS.gene49820.t1;Parent=MS.gene49820.t1 |
Gene Sequence |
Protein sequence |