Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50018.t1 | XP_013458275.1 | 96.9 | 160 | 5 | 0 | 6 | 165 | 251 | 410 | 6.90E-46 | 194.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50018.t1 | A0A072USJ1 | 96.9 | 160 | 5 | 0 | 6 | 165 | 251 | 410 | 5.0e-46 | 194.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene50018 | 0.800693 | 1.28E-48 | -1.69E-46 |
| MS.gene049404 | MS.gene50018 | 0.814181 | 1.76E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene50018 | 0.826242 | 3.02E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene50018 | 0.801904 | 7.23E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene50018 | 0.803727 | 3.04E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene50018 | 0.809324 | 2.00E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene50018 | 0.827071 | 1.92E-54 | -1.69E-46 |
| MS.gene054775 | MS.gene50018 | 0.801787 | 7.63E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene50018 | 0.81332 | 2.72E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene50018 | 0.808818 | 2.57E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene50018 | 0.814898 | 1.22E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene50018 | 0.804886 | 1.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50018.t1 | MTR_4g120360 | 96.875 | 160 | 5 | 0 | 6 | 165 | 251 | 410 | 1.49e-107 | 317 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50018.t1 | AT3G16760 | 52.976 | 168 | 59 | 6 | 1 | 165 | 268 | 418 | 1.09e-39 | 142 |
| MS.gene50018.t1 | AT3G16760 | 44.643 | 168 | 54 | 7 | 1 | 165 | 268 | 399 | 1.58e-22 | 95.1 |
Find 72 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCTCCTGCTGGGATATC+AGG | 0.240809 | 6.2:-77164205 | MS.gene50018:CDS |
| CCAACACCAGCTCAAGCTTC+TGG | 0.243260 | 6.2:-77164391 | MS.gene50018:CDS |
| AATTTGCTGATGCTATTAAA+TGG | 0.246283 | 6.2:-77164138 | MS.gene50018:CDS |
| GGGCTTCCACCTCCTCCTGC+TGG | 0.273283 | 6.2:-77164214 | MS.gene50018:CDS |
| ATCTTCTGAAATTGATGATT+GGG | 0.316941 | 6.2:-77164293 | MS.gene50018:CDS |
| ATGCTATTAAATGGCTTTCA+TGG | 0.318577 | 6.2:-77164129 | MS.gene50018:CDS |
| AGTGGAAGTTTGGATTCTTA+TGG | 0.336424 | 6.2:-77162317 | MS.gene50018:CDS |
| GATGATTGGGGTACTGAGTT+TGG | 0.345895 | 6.2:-77164280 | MS.gene50018:CDS |
| TCATCTGGAGGTGGTGGTGG+TGG | 0.381873 | 6.2:-77164328 | MS.gene50018:CDS |
| CTACCACCACTTGATGGAAA+TGG | 0.389548 | 6.2:+77164460 | None:intergenic |
| TCTGGAGGTGGTGGTGGTGG+AGG | 0.391020 | 6.2:-77164325 | MS.gene50018:CDS |
| CATCTTCTGAAATTGATGAT+TGG | 0.401858 | 6.2:-77164294 | MS.gene50018:CDS |
| TATAATACCAAGCAAAGGTT+CGG | 0.403906 | 6.2:-77162184 | MS.gene50018:CDS |
| CAACACCAGCTCAAGCTTCT+GGG | 0.410616 | 6.2:-77164390 | MS.gene50018:CDS |
| CCAACACTACCACCACTTGA+TGG | 0.411604 | 6.2:+77164454 | None:intergenic |
| AGGGATGGATAATTACAAAC+AGG | 0.417808 | 6.2:-77164164 | MS.gene50018:CDS |
| GGCTTCCACCTCCTCCTGCT+GGG | 0.431491 | 6.2:-77164213 | MS.gene50018:CDS |
| GCTTCTTGTTATAAAGAAGT+TGG | 0.432373 | 6.2:-77164043 | MS.gene50018:CDS |
| CCATCATCTGGAGGTGGTGG+TGG | 0.433402 | 6.2:-77164331 | MS.gene50018:CDS |
| GGGACAACCACTGAGCTTGA+TGG | 0.450240 | 6.2:-77164235 | MS.gene50018:CDS |
| CTTATTCTTCTAGAGAAAGC+TGG | 0.452802 | 6.2:-77164103 | MS.gene50018:CDS |
| ACATCTACCACTCCATCATC+TGG | 0.458456 | 6.2:-77164343 | MS.gene50018:CDS |
| GGACAACCACTGAGCTTGAT+GGG | 0.464015 | 6.2:-77164234 | MS.gene50018:CDS |
| ATAATACCAAGCAAAGGTTC+GGG | 0.468232 | 6.2:-77162183 | MS.gene50018:CDS |
| AAAGTATACCTTGGTACAAT+CGG | 0.485485 | 6.2:+77164000 | None:intergenic |
| TTATTCTTCTAGAGAAAGCT+GGG | 0.492606 | 6.2:-77164102 | MS.gene50018:CDS |
| AGCTGGGGATGGTGCTGGTA+CGG | 0.495673 | 6.2:-77164086 | MS.gene50018:CDS |
| CCACCACCACCTCCAGATGA+TGG | 0.495707 | 6.2:+77164331 | None:intergenic |
| GATATCCCAGCAGGAGGAGG+TGG | 0.497382 | 6.2:+77164208 | None:intergenic |
| CCAGAAGCTTGAGCTGGTGT+TGG | 0.499184 | 6.2:+77164391 | None:intergenic |
| CCATCAAGTGGTGGTAGTGT+TGG | 0.502799 | 6.2:-77164454 | MS.gene50018:CDS |
| GAGAAAGCTGGGGATGGTGC+TGG | 0.511690 | 6.2:-77164091 | MS.gene50018:CDS |
| TGCTATTAAATGGCTTTCAT+GGG | 0.517180 | 6.2:-77164128 | MS.gene50018:CDS |
| TGGGGTACTGAGTTTGGAGG+AGG | 0.520172 | 6.2:-77164274 | MS.gene50018:CDS |
| TGGGGATGGTGCTGGTACGG+TGG | 0.527253 | 6.2:-77164083 | MS.gene50018:CDS |
| TGGATACCCGAACCTTTGCT+TGG | 0.528140 | 6.2:+77162177 | None:intergenic |
| TGGTTGTCCCACCAACATCA+TGG | 0.529915 | 6.2:+77164248 | None:intergenic |
| ACTCCATCATCTGGAGGTGG+TGG | 0.531742 | 6.2:-77164334 | MS.gene50018:CDS |
| GATTGGGGTACTGAGTTTGG+AGG | 0.532492 | 6.2:-77164277 | MS.gene50018:CDS |
| GGATGGTGCTGGTACGGTGG+AGG | 0.534756 | 6.2:-77164080 | MS.gene50018:CDS |
| ATATCAGGTTCTTCTGCTAA+AGG | 0.534928 | 6.2:-77164190 | MS.gene50018:CDS |
| GGTTCTTCTGCTAAAGGCAA+AGG | 0.540494 | 6.2:-77164184 | MS.gene50018:CDS |
| AACACCAGCTCAAGCTTCTG+GGG | 0.545621 | 6.2:-77164389 | MS.gene50018:CDS |
| CGTGATGGAGGTAAAGAAGA+AGG | 0.546986 | 6.2:-77162282 | MS.gene50018:CDS |
| AGGTGGTGGTGGTGGAGGTG+CGG | 0.549844 | 6.2:-77164320 | MS.gene50018:CDS |
| TCCCATCCATTTCCATCAAG+TGG | 0.550610 | 6.2:-77164466 | MS.gene50018:CDS |
| GTTCTTCTGCTAAAGGCAAA+GGG | 0.550732 | 6.2:-77164183 | MS.gene50018:CDS |
| CCTGATATCCCAGCAGGAGG+AGG | 0.553353 | 6.2:+77164205 | None:intergenic |
| CACCACTTGATGGAAATGGA+TGG | 0.559417 | 6.2:+77164464 | None:intergenic |
| ACCACTCCATCATCTGGAGG+TGG | 0.567943 | 6.2:-77164337 | MS.gene50018:CDS |
| ATTTGATGATCTTCATCATG+TGG | 0.570148 | 6.2:+77162157 | None:intergenic |
| CTTCTAGAGAAAGCTGGGGA+TGG | 0.579736 | 6.2:-77164097 | MS.gene50018:CDS |
| GAAGAACCTGATATCCCAGC+AGG | 0.585834 | 6.2:+77164199 | None:intergenic |
| TTCTGCTAAAGGCAAAGGGA+TGG | 0.585920 | 6.2:-77164179 | MS.gene50018:CDS |
| ACCACTTGATGGAAATGGAT+GGG | 0.594133 | 6.2:+77164465 | None:intergenic |
| GAGTGAACACGGTTGATGCT+TGG | 0.608303 | 6.2:+77162114 | None:intergenic |
| GGAGGAAACCATGATGTTGG+TGG | 0.608973 | 6.2:-77164256 | MS.gene50018:CDS |
| TACAATATAATACCAAGCAA+AGG | 0.612865 | 6.2:-77162189 | MS.gene50018:CDS |
| GGAGGAGGAAACCATGATGT+TGG | 0.614688 | 6.2:-77164259 | MS.gene50018:CDS |
| TGTATAACAGTTCGTGATGG+AGG | 0.619504 | 6.2:-77162294 | MS.gene50018:CDS |
| GAGGAAACCATGATGTTGGT+GGG | 0.620042 | 6.2:-77164255 | MS.gene50018:CDS |
| TCTTCTGAAATTGATGATTG+GGG | 0.623414 | 6.2:-77164292 | MS.gene50018:CDS |
| TGGTGTATAACAGTTCGTGA+TGG | 0.624840 | 6.2:-77162297 | MS.gene50018:CDS |
| CATCCATTTCCATCAAGTGG+TGG | 0.662013 | 6.2:-77164463 | MS.gene50018:CDS |
| ACCACCTCCAGATGATGGAG+TGG | 0.663977 | 6.2:+77164336 | None:intergenic |
| GAACCTGATATCCCAGCAGG+AGG | 0.665419 | 6.2:+77164202 | None:intergenic |
| GGGATGGATAATTACAAACA+GGG | 0.676491 | 6.2:-77164163 | MS.gene50018:CDS |
| AGCGGTGGCCGATTGTACCA+AGG | 0.676723 | 6.2:-77164008 | MS.gene50018:intron |
| TCTACCACTCCATCATCTGG+AGG | 0.681710 | 6.2:-77164340 | MS.gene50018:CDS |
| TATTCTTCTAGAGAAAGCTG+GGG | 0.681721 | 6.2:-77164101 | MS.gene50018:CDS |
| TGGAAGCCCATCAAGCTCAG+TGG | 0.695115 | 6.2:+77164228 | None:intergenic |
| ACACCAGCTCAAGCTTCTGG+GGG | 0.706242 | 6.2:-77164388 | MS.gene50018:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTATAGAATTTCTAA+TGG | - | chr6.2:77162784-77162803 | MS.gene50018:intron | 10.0% |
| !! | AGAAAAAAAAACTAATCAAA+AGG | - | chr6.2:77163001-77163020 | MS.gene50018:intron | 15.0% |
| !! | ATACTTTAGTATCTTATTAA+TGG | - | chr6.2:77162605-77162624 | MS.gene50018:intron | 15.0% |
| !! | TTATAGTATACAATATATCT+AGG | - | chr6.2:77163666-77163685 | MS.gene50018:intron | 15.0% |
| !!! | ATTTGTTTTAGTTCTATAAA+TGG | - | chr6.2:77164019-77164038 | MS.gene50018:CDS | 15.0% |
| !!! | GAGTTTATTTAAAACTTATT+TGG | + | chr6.2:77163271-77163290 | None:intergenic | 15.0% |
| !! | TCATCTTTAGTTATAAAGAT+AGG | + | chr6.2:77163091-77163110 | None:intergenic | 20.0% |
| !! | TTATAACTAAAGATGAAATG+TGG | - | chr6.2:77163095-77163114 | MS.gene50018:intron | 20.0% |
| !!! | AAGTTTTAAGTTGTTTTGAT+AGG | - | chr6.2:77163134-77163153 | MS.gene50018:intron | 20.0% |
| ! | AATTGAAGCTTGAAAGATTA+AGG | - | chr6.2:77163830-77163849 | MS.gene50018:intron | 25.0% |
| ! | AGCAGAAATATATTATGCAA+AGG | - | chr6.2:77162936-77162955 | MS.gene50018:intron | 25.0% |
| ! | ATCAAGATAAATGTAAGACA+AGG | + | chr6.2:77163767-77163786 | None:intergenic | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | + | chr6.2:77163375-77163394 | None:intergenic | 25.0% |
| ! | TAACTACAATCTCATACAAA+GGG | + | chr6.2:77164132-77164151 | None:intergenic | 25.0% |
| ! | TAAGATACTAAAGTATACCT+TGG | + | chr6.2:77162601-77162620 | None:intergenic | 25.0% |
| ! | TACAATATAATACCAAGCAA+AGG | - | chr6.2:77164400-77164419 | MS.gene50018:CDS | 25.0% |
| ! | TATGTACATAGCAACAAATA+TGG | + | chr6.2:77163962-77163981 | None:intergenic | 25.0% |
| ! | TCAAATCCATAGACATAAAA+AGG | + | chr6.2:77164162-77164181 | None:intergenic | 25.0% |
| ! | TGTTATTAAGGTTGAATTGT+TGG | - | chr6.2:77162859-77162878 | MS.gene50018:intron | 25.0% |
| ! | TTGCTATGTACATAACTAAA+TGG | - | chr6.2:77163968-77163987 | MS.gene50018:intron | 25.0% |
| !! | CTTTAGCATAATTGTTTTCA+AGG | + | chr6.2:77163994-77164013 | None:intergenic | 25.0% |
| !! | TATAGAATTTCTAATGGACA+TGG | - | chr6.2:77162790-77162809 | MS.gene50018:intron | 25.0% |
| !! | TGAATTGTTGGCTAAATTAA+AGG | - | chr6.2:77162871-77162890 | MS.gene50018:intron | 25.0% |
| !! | TGTAAACCTTTTTATGTCTA+TGG | - | chr6.2:77164153-77164172 | MS.gene50018:CDS | 25.0% |
| !! | TTCATGTTTCTTCAATTTTG+TGG | - | chr6.2:77164051-77164070 | MS.gene50018:CDS | 25.0% |
| !!! | AATTTGCTGATGCTATTAAA+TGG | - | chr6.2:77162451-77162470 | MS.gene50018:intron | 25.0% |
| !!! | ATCTTCTGAAATTGATGATT+GGG | - | chr6.2:77162296-77162315 | MS.gene50018:CDS | 25.0% |
| !!! | CAGTTCATGATTTTTTATAG+TGG | - | chr6.2:77164254-77164273 | MS.gene50018:CDS | 25.0% |
| !!! | GATTTTTTATAGTGGAAGTT+TGG | - | chr6.2:77164262-77164281 | MS.gene50018:CDS | 25.0% |
| AAAGTATACCTTGGTACAAT+CGG | + | chr6.2:77162592-77162611 | None:intergenic | 30.0% | |
| AACAGACTATCAGATACATA+TGG | - | chr6.2:77163610-77163629 | MS.gene50018:intron | 30.0% | |
| ACTAATCAAAAGGCTATCAT+AGG | - | chr6.2:77163011-77163030 | MS.gene50018:intron | 30.0% | |
| ACTTATTTGGACTTAGCTTA+TGG | + | chr6.2:77163258-77163277 | None:intergenic | 30.0% | |
| AGCACTACACTAATTAGAAA+CGG | + | chr6.2:77163325-77163344 | None:intergenic | 30.0% | |
| ATCAGTAATTCACCATGTAA+TGG | - | chr6.2:77163922-77163941 | MS.gene50018:intron | 30.0% | |
| ATGCTATTAAATGGCTTTCA+TGG | - | chr6.2:77162460-77162479 | MS.gene50018:intron | 30.0% | |
| ATTTATCTTGATTGACACCT+TGG | - | chr6.2:77163775-77163794 | MS.gene50018:intron | 30.0% | |
| CATGTATCAGTAAATGTTGT+TGG | - | chr6.2:77163715-77163734 | MS.gene50018:intron | 30.0% | |
| CTAACTACAATCTCATACAA+AGG | + | chr6.2:77164133-77164152 | None:intergenic | 30.0% | |
| GATACATATGGTATCCAATT+TGG | - | chr6.2:77163622-77163641 | MS.gene50018:intron | 30.0% | |
| GATGTGAAAAACATATCCAT+TGG | + | chr6.2:77162231-77162250 | None:intergenic | 30.0% | |
| GATTACACATGTTATACTCA+GGG | + | chr6.2:77163802-77163821 | None:intergenic | 30.0% | |
| TATAATACCAAGCAAAGGTT+CGG | - | chr6.2:77164405-77164424 | MS.gene50018:CDS | 30.0% | |
| TGATTACACATGTTATACTC+AGG | + | chr6.2:77163803-77163822 | None:intergenic | 30.0% | |
| TGCTATTAAATGGCTTTCAT+GGG | - | chr6.2:77162461-77162480 | MS.gene50018:intron | 30.0% | |
| TTACACATACTATAGCTGTT+TGG | + | chr6.2:77163592-77163611 | None:intergenic | 30.0% | |
| TTCAAATTGCTATCTTCACA+TGG | + | chr6.2:77164108-77164127 | None:intergenic | 30.0% | |
| TTGAATGTAATCACATGTGT+CGG | + | chr6.2:77162686-77162705 | None:intergenic | 30.0% | |
| TTTATCTTGATTGACACCTT+GGG | - | chr6.2:77163776-77163795 | MS.gene50018:intron | 30.0% | |
| ! | AGTTGGAGAGTATAAAAAAG+CGG | - | chr6.2:77162563-77162582 | MS.gene50018:intron | 30.0% |
| ! | ATTTGATGATCTTCATCATG+TGG | + | chr6.2:77164435-77164454 | None:intergenic | 30.0% |
| ! | GCTTCTTGTTATAAAGAAGT+TGG | - | chr6.2:77162546-77162565 | MS.gene50018:intron | 30.0% |
| ! | GTGGATAACAACACATATTT+TGG | - | chr6.2:77164070-77164089 | MS.gene50018:CDS | 30.0% |
| ! | TAATGGACATGGAACTTATA+TGG | - | chr6.2:77162801-77162820 | MS.gene50018:intron | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr6.2:77163379-77163398 | MS.gene50018:intron | 30.0% |
| ! | TTATTCTTCTAGAGAAAGCT+GGG | - | chr6.2:77162487-77162506 | MS.gene50018:intron | 30.0% |
| ! | TTGTTGGCTAAATTAAAGGA+TGG | - | chr6.2:77162875-77162894 | MS.gene50018:intron | 30.0% |
| !! | AACAACACATATTTTGGACT+GGG | - | chr6.2:77164076-77164095 | MS.gene50018:CDS | 30.0% |
| !! | CATCTTCTGAAATTGATGAT+TGG | - | chr6.2:77162295-77162314 | MS.gene50018:CDS | 30.0% |
| !! | TAACAACACATATTTTGGAC+TGG | - | chr6.2:77164075-77164094 | MS.gene50018:CDS | 30.0% |
| !! | TCTTCTGAAATTGATGATTG+GGG | - | chr6.2:77162297-77162316 | MS.gene50018:CDS | 30.0% |
| !!! | GGAATTGATGTTGATTTTAC+TGG | - | chr6.2:77162156-77162175 | MS.gene50018:CDS | 30.0% |
| !!! | GGATGGTTTTGCATTTTTTT+TGG | - | chr6.2:77162892-77162911 | MS.gene50018:intron | 30.0% |
| !!! | TGGTTTTGCATTTTTTTTGG+AGG | - | chr6.2:77162895-77162914 | MS.gene50018:intron | 30.0% |
| !!! | TGTTGATTTTACTGGATCTT+CGG | - | chr6.2:77162164-77162183 | MS.gene50018:CDS | 30.0% |
| !!! | TTTGCATTTTTTTTGGAGGT+GGG | - | chr6.2:77162899-77162918 | MS.gene50018:intron | 30.0% |
| !!! | TTTTGCATTTTTTTTGGAGG+TGG | - | chr6.2:77162898-77162917 | MS.gene50018:intron | 30.0% |
| AACTGGTGCGTTTCAATTTA+TGG | - | chr6.2:77163480-77163499 | MS.gene50018:intron | 35.0% | |
| AAGCCTAAATATGGAACTCA+TGG | + | chr6.2:77163868-77163887 | None:intergenic | 35.0% | |
| AGCAACAAATATGGAACTCA+TGG | + | chr6.2:77163953-77163972 | None:intergenic | 35.0% | |
| AGGGATGGATAATTACAAAC+AGG | - | chr6.2:77162425-77162444 | MS.gene50018:intron | 35.0% | |
| AGTCCATGAGTTCCATATTT+AGG | - | chr6.2:77163862-77163881 | MS.gene50018:intron | 35.0% | |
| AGTGGAAGTTTGGATTCTTA+TGG | - | chr6.2:77164272-77164291 | MS.gene50018:CDS | 35.0% | |
| ATAATACCAAGCAAAGGTTC+GGG | - | chr6.2:77164406-77164425 | MS.gene50018:CDS | 35.0% | |
| ATATCAGGTTCTTCTGCTAA+AGG | - | chr6.2:77162399-77162418 | MS.gene50018:intron | 35.0% | |
| ATATCTACGAATCACAGACA+CGG | + | chr6.2:77162766-77162785 | None:intergenic | 35.0% | |
| CTACAATATTGTCGTAGCTT+GGG | - | chr6.2:77164372-77164391 | MS.gene50018:CDS | 35.0% | |
| GCTTGAAAGATTAAGGTGAA+TGG | - | chr6.2:77163837-77163856 | MS.gene50018:intron | 35.0% | |
| GGGATGGATAATTACAAACA+GGG | - | chr6.2:77162426-77162445 | MS.gene50018:intron | 35.0% | |
| GTAGATCTTCATCAGAGAAT+AGG | + | chr6.2:77164356-77164375 | None:intergenic | 35.0% | |
| TACTGATCAAGAAATCAGTG+TGG | + | chr6.2:77163909-77163928 | None:intergenic | 35.0% | |
| TCTACAATATTGTCGTAGCT+TGG | - | chr6.2:77164371-77164390 | MS.gene50018:CDS | 35.0% | |
| TGAGAAAGGAAGCCTAAATA+TGG | + | chr6.2:77163877-77163896 | None:intergenic | 35.0% | |
| TTCAACCTTAATAACACAGC+TGG | + | chr6.2:77162855-77162874 | None:intergenic | 35.0% | |
| ! | ACATACCAGCTGTGTTATTA+AGG | - | chr6.2:77162847-77162866 | MS.gene50018:intron | 35.0% |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr6.2:77163359-77163378 | MS.gene50018:intron | 35.0% |
| ! | CTTATTCTTCTAGAGAAAGC+TGG | - | chr6.2:77162486-77162505 | MS.gene50018:intron | 35.0% |
| ! | GAATAGTTGTTTCGCCAAAT+TGG | + | chr6.2:77163639-77163658 | None:intergenic | 35.0% |
| ! | TATTCTTCTAGAGAAAGCTG+GGG | - | chr6.2:77162488-77162507 | MS.gene50018:intron | 35.0% |
| ! | TGTTGTTGTTGCATGTTTCT+AGG | - | chr6.2:77163457-77163476 | MS.gene50018:intron | 35.0% |
| !!! | TTGCATTTTTTTTGGAGGTG+GGG | - | chr6.2:77162900-77162919 | MS.gene50018:intron | 35.0% |
| ACCACTTGATGGAAATGGAT+GGG | + | chr6.2:77162127-77162146 | None:intergenic | 40.0% | |
| GTTCTTCTGCTAAAGGCAAA+GGG | - | chr6.2:77162406-77162425 | MS.gene50018:intron | 40.0% | |
| TGGTGTATAACAGTTCGTGA+TGG | - | chr6.2:77164292-77164311 | MS.gene50018:CDS | 40.0% | |
| TGTATAACAGTTCGTGATGG+AGG | - | chr6.2:77164295-77164314 | MS.gene50018:CDS | 40.0% | |
| ! | GTTTCTAGAGGTCAATGAGT+TGG | - | chr6.2:77163347-77163366 | MS.gene50018:intron | 40.0% |
| ! | TGGAGAGTATAAAAAAGCGG+TGG | - | chr6.2:77162566-77162585 | MS.gene50018:intron | 40.0% |
| !! | GTGTAGTGCTATGTTTCTAG+AGG | - | chr6.2:77163335-77163354 | MS.gene50018:intron | 40.0% |
| !! | TGTTGCATGTTTCTAGGAAC+TGG | - | chr6.2:77163463-77163482 | MS.gene50018:intron | 40.0% |
| !!! | TGCATTTTTTTTGGAGGTGG+GGG | - | chr6.2:77162901-77162920 | MS.gene50018:intron | 40.0% |
| ACATCTACCACTCCATCATC+TGG | - | chr6.2:77162246-77162265 | MS.gene50018:intron | 45.0% | |
| ACGGCTTCCTTAAGCCATTA+TGG | + | chr6.2:77163306-77163325 | None:intergenic | 45.0% | |
| CACCACTTGATGGAAATGGA+TGG | + | chr6.2:77162128-77162147 | None:intergenic | 45.0% | |
| CATCCATTTCCATCAAGTGG+TGG | - | chr6.2:77162126-77162145 | MS.gene50018:CDS | 45.0% | |
| CGGCTTCCTTAAGCCATTAT+GGG | + | chr6.2:77163305-77163324 | None:intergenic | 45.0% | |
| CTACCACCACTTGATGGAAA+TGG | + | chr6.2:77162132-77162151 | None:intergenic | 45.0% | |
| GAGGAAACCATGATGTTGGT+GGG | - | chr6.2:77162334-77162353 | MS.gene50018:intron | 45.0% | |
| GCTTCCTTAAGCCATTATGG+GGG | + | chr6.2:77163303-77163322 | None:intergenic | 45.0% | |
| GGCTTCCTTAAGCCATTATG+GGG | + | chr6.2:77163304-77163323 | None:intergenic | 45.0% | |
| GGTTCTTCTGCTAAAGGCAA+AGG | - | chr6.2:77162405-77162424 | MS.gene50018:intron | 45.0% | |
| TCCCATCCATTTCCATCAAG+TGG | - | chr6.2:77162123-77162142 | MS.gene50018:CDS | 45.0% | |
| TTCTGCTAAAGGCAAAGGGA+TGG | - | chr6.2:77162410-77162429 | MS.gene50018:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr6.2:77163428-77163447 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr6.2:77163429-77163448 | None:intergenic | 45.0% |
| ! | CGTGATGGAGGTAAAGAAGA+AGG | - | chr6.2:77164307-77164326 | MS.gene50018:CDS | 45.0% |
| !! | CTCATGGACTAGCCATTACA+TGG | + | chr6.2:77163937-77163956 | None:intergenic | 45.0% |
| !! | GATGATTGGGGTACTGAGTT+TGG | - | chr6.2:77162309-77162328 | MS.gene50018:CDS | 45.0% |
| !! | GCTCTCTAAAACACTCACAC+AGG | - | chr6.2:77163224-77163243 | MS.gene50018:intron | 45.0% |
| !!! | TTTTTTTGGAGGTGGGGGTT+GGG | - | chr6.2:77162906-77162925 | MS.gene50018:intron | 45.0% |
| !!! | TTTTTTTTGGAGGTGGGGGT+TGG | - | chr6.2:77162905-77162924 | MS.gene50018:intron | 45.0% |
| AACACCAGCTCAAGCTTCTG+GGG | - | chr6.2:77162200-77162219 | MS.gene50018:CDS | 50.0% | |
| AACGCCCCCATAATGGCTTA+AGG | - | chr6.2:77163296-77163315 | MS.gene50018:intron | 50.0% | |
| CAACACCAGCTCAAGCTTCT+GGG | - | chr6.2:77162199-77162218 | MS.gene50018:CDS | 50.0% | |
| CATGTTATACTCAGGGCCCA+AGG | + | chr6.2:77163795-77163814 | None:intergenic | 50.0% | |
| CCAACACTACCACCACTTGA+TGG | + | chr6.2:77162138-77162157 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr6.2:77163427-77163446 | MS.gene50018:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr6.2:77163424-77163443 | None:intergenic | 50.0% | |
| GAAGAACCTGATATCCCAGC+AGG | + | chr6.2:77162393-77162412 | None:intergenic | 50.0% | |
| GGACAACCACTGAGCTTGAT+GGG | - | chr6.2:77162355-77162374 | MS.gene50018:intron | 50.0% | |
| GGAGGAAACCATGATGTTGG+TGG | - | chr6.2:77162333-77162352 | MS.gene50018:intron | 50.0% | |
| GGAGGAGGAAACCATGATGT+TGG | - | chr6.2:77162330-77162349 | MS.gene50018:intron | 50.0% | |
| TCTACCACTCCATCATCTGG+AGG | - | chr6.2:77162249-77162268 | MS.gene50018:intron | 50.0% | |
| TCTTCCAAACGCCCCCATAA+TGG | - | chr6.2:77163289-77163308 | MS.gene50018:intron | 50.0% | |
| TGGATACCCGAACCTTTGCT+TGG | + | chr6.2:77164415-77164434 | None:intergenic | 50.0% | |
| TGGTTGTCCCACCAACATCA+TGG | + | chr6.2:77162344-77162363 | None:intergenic | 50.0% | |
| TGTGGTTGCGTTCGTGAGAA+AGG | + | chr6.2:77163891-77163910 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr6.2:77163430-77163449 | None:intergenic | 50.0% |
| ! | CCATCAAGTGGTGGTAGTGT+TGG | - | chr6.2:77162135-77162154 | MS.gene50018:CDS | 50.0% |
| ! | CTTCTAGAGAAAGCTGGGGA+TGG | - | chr6.2:77162492-77162511 | MS.gene50018:intron | 50.0% |
| ! | GAGTGAACACGGTTGATGCT+TGG | + | chr6.2:77164478-77164497 | None:intergenic | 50.0% |
| !! | GATTGGGGTACTGAGTTTGG+AGG | - | chr6.2:77162312-77162331 | MS.gene50018:CDS | 50.0% |
| !! | TAAGCCATTATGGGGGCGTT+TGG | + | chr6.2:77163296-77163315 | None:intergenic | 50.0% |
| !!! | TTTTTTGGAGGTGGGGGTTG+GGG | - | chr6.2:77162907-77162926 | MS.gene50018:intron | 50.0% |
| ACACCAGCTCAAGCTTCTGG+GGG | - | chr6.2:77162201-77162220 | MS.gene50018:CDS | 55.0% | |
| ACCACTCCATCATCTGGAGG+TGG | - | chr6.2:77162252-77162271 | MS.gene50018:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr6.2:77163416-77163435 | None:intergenic | 55.0% | |
| ACTCCATCATCTGGAGGTGG+TGG | - | chr6.2:77162255-77162274 | MS.gene50018:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr6.2:77163415-77163434 | MS.gene50018:intron | 55.0% | |
| CCAACACCAGCTCAAGCTTC+TGG | - | chr6.2:77162198-77162217 | MS.gene50018:CDS | 55.0% | |
| CCAGAAGCTTGAGCTGGTGT+TGG | + | chr6.2:77162201-77162220 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr6.2:77163422-77163441 | MS.gene50018:intron | 55.0% | |
| GAACCTGATATCCCAGCAGG+AGG | + | chr6.2:77162390-77162409 | None:intergenic | 55.0% | |
| GGGACAACCACTGAGCTTGA+TGG | - | chr6.2:77162354-77162373 | MS.gene50018:intron | 55.0% | |
| TGGAAGCCCATCAAGCTCAG+TGG | + | chr6.2:77162364-77162383 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr6.2:77163416-77163435 | MS.gene50018:intron | 55.0% | |
| ! | AGCTTCTGGGGGTGATCCAA+TGG | - | chr6.2:77162212-77162231 | MS.gene50018:intron | 55.0% |
| !! | ACCACCTCCAGATGATGGAG+TGG | + | chr6.2:77162256-77162275 | None:intergenic | 55.0% |
| !! | TGGGGTACTGAGTTTGGAGG+AGG | - | chr6.2:77162315-77162334 | MS.gene50018:CDS | 55.0% |
| AGCGGTGGCCGATTGTACCA+AGG | - | chr6.2:77162581-77162600 | MS.gene50018:intron | 60.0% | |
| CCACCACCACCTCCAGATGA+TGG | + | chr6.2:77162261-77162280 | None:intergenic | 60.0% | |
| CCTCCTCCTGCTGGGATATC+AGG | - | chr6.2:77162384-77162403 | MS.gene50018:intron | 60.0% | |
| CCTGATATCCCAGCAGGAGG+AGG | + | chr6.2:77162387-77162406 | None:intergenic | 60.0% | |
| GAGAAAGCTGGGGATGGTGC+TGG | - | chr6.2:77162498-77162517 | MS.gene50018:intron | 60.0% | |
| GATATCCCAGCAGGAGGAGG+TGG | + | chr6.2:77162384-77162403 | None:intergenic | 60.0% | |
| TCACCCCCAGAAGCTTGAGC+TGG | + | chr6.2:77162207-77162226 | None:intergenic | 60.0% | |
| ! | CCATCATCTGGAGGTGGTGG+TGG | - | chr6.2:77162258-77162277 | MS.gene50018:intron | 60.0% |
| !! | AGCTGGGGATGGTGCTGGTA+CGG | - | chr6.2:77162503-77162522 | MS.gene50018:intron | 60.0% |
| !! | TCATCTGGAGGTGGTGGTGG+TGG | - | chr6.2:77162261-77162280 | MS.gene50018:intron | 60.0% |
| GGCTTCCACCTCCTCCTGCT+GGG | - | chr6.2:77162376-77162395 | MS.gene50018:intron | 65.0% | |
| !! | AGGTGGTGGTGGTGGAGGTG+CGG | - | chr6.2:77162269-77162288 | MS.gene50018:intron | 65.0% |
| !! | GGATGGTGCTGGTACGGTGG+AGG | - | chr6.2:77162509-77162528 | MS.gene50018:intron | 65.0% |
| !! | TCTGGAGGTGGTGGTGGTGG+AGG | - | chr6.2:77162264-77162283 | MS.gene50018:intron | 65.0% |
| !! | TGGGGATGGTGCTGGTACGG+TGG | - | chr6.2:77162506-77162525 | MS.gene50018:intron | 65.0% |
| GGGCTTCCACCTCCTCCTGC+TGG | - | chr6.2:77162375-77162394 | MS.gene50018:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 77162108 | 77164503 | 77162108 | ID=MS.gene50018 |
| chr6.2 | mRNA | 77162108 | 77164503 | 77162108 | ID=MS.gene50018.t1;Parent=MS.gene50018 |
| chr6.2 | exon | 77164009 | 77164503 | 77164009 | ID=MS.gene50018.t1.exon1;Parent=MS.gene50018.t1 |
| chr6.2 | CDS | 77164009 | 77164503 | 77164009 | ID=cds.MS.gene50018.t1;Parent=MS.gene50018.t1 |
| chr6.2 | exon | 77162270 | 77162337 | 77162270 | ID=MS.gene50018.t1.exon2;Parent=MS.gene50018.t1 |
| chr6.2 | CDS | 77162270 | 77162337 | 77162270 | ID=cds.MS.gene50018.t1;Parent=MS.gene50018.t1 |
| chr6.2 | exon | 77162108 | 77162222 | 77162108 | ID=MS.gene50018.t1.exon3;Parent=MS.gene50018.t1 |
| chr6.2 | CDS | 77162108 | 77162222 | 77162108 | ID=cds.MS.gene50018.t1;Parent=MS.gene50018.t1 |
| Gene Sequence |
| Protein sequence |
