Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50053.t1 | XP_013456379.1 | 96.1 | 257 | 5 | 1 | 1 | 257 | 1 | 252 | 1.10E-132 | 482.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50053.t1 | O23207 | 64.0 | 272 | 81 | 2 | 1 | 255 | 1 | 272 | 3.4e-90 | 332.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50053.t1 | A0A072UX31 | 96.1 | 257 | 5 | 1 | 1 | 257 | 1 | 252 | 8.0e-133 | 482.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049227 | MS.gene50053 | 0.803078 | 4.14E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene50053 | 0.829675 | 4.51E-55 | -1.69E-46 |
| MS.gene050359 | MS.gene50053 | 0.800354 | 1.50E-48 | -1.69E-46 |
| MS.gene051852 | MS.gene50053 | 0.81909 | 1.39E-52 | -1.69E-46 |
| MS.gene052307 | MS.gene50053 | 0.838973 | 2.09E-57 | -1.69E-46 |
| MS.gene053143 | MS.gene50053 | 0.809559 | 1.78E-50 | -1.69E-46 |
| MS.gene056677 | MS.gene50053 | 0.896922 | 2.32E-76 | -1.69E-46 |
| MS.gene05952 | MS.gene50053 | 0.806639 | 7.46E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene50053 | 0.800817 | 1.21E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene50053 | 0.819341 | 1.22E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50053.t1 | MTR_4g069250 | 96.109 | 257 | 5 | 1 | 1 | 257 | 1 | 252 | 0.0 | 501 |
| MS.gene50053.t1 | MTR_5g019620 | 66.148 | 257 | 79 | 2 | 1 | 255 | 1 | 251 | 3.70e-121 | 345 |
| MS.gene50053.t1 | MTR_2g081810 | 68.182 | 198 | 62 | 1 | 56 | 253 | 3 | 199 | 6.62e-94 | 275 |
| MS.gene50053.t1 | MTR_8g466030 | 67.677 | 198 | 63 | 1 | 56 | 253 | 3 | 199 | 2.66e-93 | 273 |
| MS.gene50053.t1 | MTR_5g070030 | 64.467 | 197 | 70 | 0 | 57 | 253 | 5 | 201 | 3.43e-92 | 270 |
| MS.gene50053.t1 | MTR_4g091900 | 66.497 | 197 | 65 | 1 | 57 | 253 | 5 | 200 | 1.01e-90 | 267 |
| MS.gene50053.t1 | MTR_4g091900 | 65.608 | 189 | 64 | 1 | 65 | 253 | 1 | 188 | 6.33e-85 | 251 |
| MS.gene50053.t1 | MTR_2g011080 | 60.406 | 197 | 77 | 1 | 57 | 253 | 4 | 199 | 5.45e-81 | 242 |
| MS.gene50053.t1 | MTR_2g011080 | 59.375 | 192 | 77 | 1 | 62 | 253 | 4 | 194 | 4.24e-77 | 232 |
| MS.gene50053.t1 | MTR_2g011080 | 61.745 | 149 | 56 | 1 | 105 | 253 | 1 | 148 | 1.06e-61 | 191 |
| MS.gene50053.t1 | MTR_8g466080 | 68.696 | 115 | 36 | 0 | 139 | 253 | 1 | 115 | 2.32e-51 | 164 |
| MS.gene50053.t1 | MTR_4g091890 | 65.217 | 115 | 36 | 1 | 139 | 253 | 2 | 112 | 4.94e-49 | 157 |
| MS.gene50053.t1 | MTR_8g466110 | 46.825 | 126 | 38 | 5 | 105 | 229 | 1 | 98 | 2.30e-24 | 94.0 |
| MS.gene50053.t1 | MTR_8g466150 | 46.825 | 126 | 38 | 5 | 105 | 229 | 1 | 98 | 2.30e-24 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50053.t1 | AT4G36750 | 65.074 | 272 | 78 | 1 | 1 | 255 | 1 | 272 | 3.37e-122 | 349 |
| MS.gene50053.t1 | AT4G27270 | 67.513 | 197 | 63 | 1 | 57 | 253 | 4 | 199 | 1.21e-94 | 277 |
| MS.gene50053.t1 | AT5G54500 | 67.513 | 197 | 63 | 1 | 57 | 253 | 4 | 199 | 5.86e-93 | 272 |
| MS.gene50053.t1 | AT4G27270 | 66.667 | 189 | 62 | 1 | 65 | 253 | 1 | 188 | 6.28e-89 | 262 |
| MS.gene50053.t1 | AT4G27270 | 66.667 | 189 | 62 | 1 | 65 | 253 | 1 | 188 | 6.28e-89 | 262 |
| MS.gene50053.t1 | AT5G58800 | 57.214 | 201 | 86 | 0 | 57 | 257 | 5 | 205 | 7.50e-84 | 249 |
| MS.gene50053.t1 | AT5G58800 | 57.214 | 201 | 86 | 0 | 57 | 257 | 5 | 205 | 7.50e-84 | 249 |
| MS.gene50053.t1 | AT5G54500 | 66.667 | 159 | 52 | 1 | 57 | 215 | 4 | 161 | 1.74e-71 | 219 |
| MS.gene50053.t1 | AT4G27270 | 69.128 | 149 | 45 | 1 | 105 | 253 | 1 | 148 | 1.91e-71 | 216 |
Find 58 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCTGATGGGTTGTTGTT+TGG | 0.212633 | 4.2:+37396558 | MS.gene50053:CDS |
| TTTGATATCTGCTGAGAATT+TGG | 0.216664 | 4.2:+37396533 | MS.gene50053:CDS |
| GTTCCTATTGGATATACTTT+TGG | 0.228007 | 4.2:+37398057 | MS.gene50053:CDS |
| CCTCTTACGCTGTAGTTTCT+TGG | 0.238361 | 4.2:-37396716 | None:intergenic |
| AGGCTGATGGGTTGTTGTTT+GGG | 0.238388 | 4.2:+37396559 | MS.gene50053:CDS |
| TCCGACGAGGTTTGGTAGTA+TGG | 0.239808 | 4.2:+37396584 | MS.gene50053:CDS |
| AAGCTTGCTGGTGTTCCTGC+TGG | 0.298841 | 4.2:+37396660 | MS.gene50053:CDS |
| AAAGGGGTTGATTCTGTTGA+TGG | 0.375228 | 4.2:+37396420 | MS.gene50053:CDS |
| TTTGAAATGGACTCAATTAG+AGG | 0.383271 | 4.2:+37398090 | MS.gene50053:CDS |
| GGAATGCTCTATGTTCCTAT+TGG | 0.388744 | 4.2:+37398045 | MS.gene50053:CDS |
| AGCTTGCTGGTGTTCCTGCT+GGG | 0.399729 | 4.2:+37396661 | MS.gene50053:CDS |
| GGTTCATTCTCTTCTGTAGT+TGG | 0.415195 | 4.2:-37396231 | None:intergenic |
| ATTAGTTCCAACACTTCCTT+TGG | 0.423053 | 4.2:-37396480 | None:intergenic |
| TTTGGGTTTCCGACGAGGTT+TGG | 0.429899 | 4.2:+37396576 | MS.gene50053:CDS |
| TGGTGCTGGAATGTTTGAAA+TGG | 0.434829 | 4.2:+37398077 | MS.gene50053:CDS |
| GCTAATATAGTCAAGAAGTT+AGG | 0.438947 | 4.2:+37398210 | MS.gene50053:CDS |
| GCACCAAAAGTATATCCAAT+AGG | 0.439235 | 4.2:-37398060 | None:intergenic |
| GAGAATTTGGTGGAGGCTGA+TGG | 0.442575 | 4.2:+37396546 | MS.gene50053:CDS |
| TGGAAGGAACAGAAGCTTGC+TGG | 0.451653 | 4.2:+37396648 | MS.gene50053:CDS |
| GATTCTGTTGATGGAGTTGA+AGG | 0.452417 | 4.2:+37396429 | MS.gene50053:CDS |
| TAGTATGGCGGCACAGATGA+AGG | 0.480751 | 4.2:+37396599 | MS.gene50053:CDS |
| GATATCTGCTGAGAATTTGG+TGG | 0.481344 | 4.2:+37396536 | MS.gene50053:CDS |
| GGAACCTCATCATCTTTCTC+AGG | 0.484933 | 4.2:-37396510 | None:intergenic |
| TTTGTTAGTACTGGTACTCA+AGG | 0.489722 | 4.2:+37396687 | MS.gene50053:CDS |
| ATTTCAATGGGGAAAGGAAG+AGG | 0.491973 | 4.2:+37396183 | None:intergenic |
| TCGATTCCACGGGGCAGTTG+TGG | 0.493726 | 4.2:+37396628 | MS.gene50053:CDS |
| GGTGGAACTCCGTATGGTGC+TGG | 0.495286 | 4.2:+37398111 | MS.gene50053:CDS |
| TTCAAAATTTCAATGGGGAA+AGG | 0.501971 | 4.2:+37396177 | None:intergenic |
| TATGGTGCTGGAACCTATGC+AGG | 0.505168 | 4.2:+37398123 | MS.gene50053:CDS |
| TCTTGAACCATCTCCTGCAT+AGG | 0.505315 | 4.2:-37398136 | None:intergenic |
| GTATGGTCATGTGGAATCAT+TGG | 0.514794 | 4.2:+37396383 | MS.gene50053:CDS |
| AGAATTTGGTGGAGGCTGAT+GGG | 0.527716 | 4.2:+37396547 | MS.gene50053:CDS |
| ACAAGCAACTGAAGCTGAGT+TGG | 0.528852 | 4.2:+37398158 | MS.gene50053:CDS |
| GACGCTGCCAAAGGAAGTGT+TGG | 0.543102 | 4.2:+37396473 | MS.gene50053:CDS |
| TTGGCACTTGCTGAATATCA+AGG | 0.565677 | 4.2:+37398177 | MS.gene50053:CDS |
| ATCTGCTGAGAATTTGGTGG+AGG | 0.570664 | 4.2:+37396539 | MS.gene50053:CDS |
| TTACTCAATGTATGGTCATG+TGG | 0.572787 | 4.2:+37396374 | MS.gene50053:CDS |
| ATTAGAGGTGGAACTCCGTA+TGG | 0.576666 | 4.2:+37398105 | MS.gene50053:CDS |
| GTTAGTACTGGTACTCAAGG+TGG | 0.582457 | 4.2:+37396690 | MS.gene50053:CDS |
| ATTCTGTTGATGGAGTTGAA+GGG | 0.590324 | 4.2:+37396430 | MS.gene50053:CDS |
| TTCCACGGGGCAGTTGTGGA+AGG | 0.595264 | 4.2:+37396632 | MS.gene50053:CDS |
| GCATAGGTTCCAGCACCATA+CGG | 0.598095 | 4.2:-37398120 | None:intergenic |
| TGTTGTTTGGGTTTCCGACG+AGG | 0.600440 | 4.2:+37396571 | MS.gene50053:CDS |
| GAAATGGACTCAATTAGAGG+TGG | 0.604389 | 4.2:+37398093 | MS.gene50053:CDS |
| AGTACTGGTACTCAAGGTGG+TGG | 0.615053 | 4.2:+37396693 | MS.gene50053:CDS |
| AGTATGGCGGCACAGATGAA+GGG | 0.615125 | 4.2:+37396600 | MS.gene50053:CDS |
| TGTCGTAGAGACGCTGCCAA+AGG | 0.620906 | 4.2:+37396464 | MS.gene50053:CDS |
| TTCCTTCCACAACTGCCCCG+TGG | 0.623823 | 4.2:-37396634 | None:intergenic |
| AGCACCTGAGAAAGATGATG+AGG | 0.634435 | 4.2:+37396506 | MS.gene50053:CDS |
| GCTGGAACCTATGCAGGAGA+TGG | 0.635685 | 4.2:+37398129 | MS.gene50053:CDS |
| TGAATATCAAGGTAGATACA+TGG | 0.639975 | 4.2:+37398188 | MS.gene50053:CDS |
| AAATTCTCAGCAGATATCAA+AGG | 0.642913 | 4.2:-37396531 | None:intergenic |
| TAGGAACATAGAGCATTCCA+TGG | 0.644524 | 4.2:-37398041 | None:intergenic |
| GCCATACTACCAAACCTCGT+CGG | 0.662442 | 4.2:-37396585 | None:intergenic |
| GACGAGGTTTGGTAGTATGG+CGG | 0.666692 | 4.2:+37396587 | MS.gene50053:CDS |
| ATAACACAATTAGTCCACCA+TGG | 0.694726 | 4.2:+37398024 | MS.gene50053:CDS |
| GAACATAGAGCATTCCATGG+TGG | 0.721594 | 4.2:-37398038 | None:intergenic |
| TTGGCAGCGTCTCTACGACA+CGG | 0.741183 | 4.2:-37396461 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAATTATAAAAACTCT+AGG | - | chr4.2:37396763-37396782 | None:intergenic | 15.0% |
| !! | AGGAAAACAAAAAAAATTAA+AGG | - | chr4.2:37396743-37396762 | None:intergenic | 15.0% |
| !! | CTCATACTAAAAAAATAGAA+CGG | - | chr4.2:37397277-37397296 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTTACTCAATGTA+TGG | + | chr4.2:37396366-37396385 | MS.gene50053:CDS | 20.0% |
| !!! | CTATTTTTTTAGTATGAGTA+CGG | + | chr4.2:37397279-37397298 | MS.gene50053:intron | 20.0% |
| !!! | TATTTTTTTAGTATGAGTAC+GGG | + | chr4.2:37397280-37397299 | MS.gene50053:intron | 20.0% |
| !!! | TTAGAGAATATTTTGACTAA+CGG | + | chr4.2:37397475-37397494 | MS.gene50053:intron | 20.0% |
| !!! | TTGTTATTAGTTAAATGTTG+TGG | + | chr4.2:37397049-37397068 | MS.gene50053:intron | 20.0% |
| ! | AACTCAAATAGTCAAATTTG+AGG | + | chr4.2:37397590-37397609 | MS.gene50053:intron | 25.0% |
| ! | AATTTCTATTGTTATGTAGC+TGG | + | chr4.2:37397995-37398014 | MS.gene50053:intron | 25.0% |
| ! | ATATAGAAGTTGGAGTAATA+AGG | + | chr4.2:37396987-37397006 | MS.gene50053:intron | 25.0% |
| ! | CACTGTTATTAAGAGTTATA+AGG | + | chr4.2:37396940-37396959 | MS.gene50053:intron | 25.0% |
| ! | TTAAGAGTTATAAGGTGATT+TGG | + | chr4.2:37396948-37396967 | MS.gene50053:intron | 25.0% |
| !!! | AAAGTGTTTTTAGACTACTT+TGG | + | chr4.2:37397670-37397689 | MS.gene50053:intron | 25.0% |
| !!! | ATATTTTTGCTGTTAGTTGA+AGG | - | chr4.2:37397030-37397049 | None:intergenic | 25.0% |
| AAATTCTCAGCAGATATCAA+AGG | - | chr4.2:37396534-37396553 | None:intergenic | 30.0% | |
| ATCTAGACATTTGATACATG+TGG | - | chr4.2:37397556-37397575 | None:intergenic | 30.0% | |
| ATCTATTCAAAGGTTATGTG+TGG | + | chr4.2:37397233-37397252 | MS.gene50053:intron | 30.0% | |
| GACTAATAAAGTGCAAAAAC+AGG | - | chr4.2:37397383-37397402 | None:intergenic | 30.0% | |
| GCTAATATAGTCAAGAAGTT+AGG | + | chr4.2:37398210-37398229 | MS.gene50053:CDS | 30.0% | |
| TCTAGACATTTGATACATGT+GGG | - | chr4.2:37397555-37397574 | None:intergenic | 30.0% | |
| TGAATATCAAGGTAGATACA+TGG | + | chr4.2:37398188-37398207 | MS.gene50053:CDS | 30.0% | |
| TGGCAAGATCATTGAAAAAA+GGG | + | chr4.2:37396403-37396422 | MS.gene50053:CDS | 30.0% | |
| TTGGCAAGATCATTGAAAAA+AGG | + | chr4.2:37396402-37396421 | MS.gene50053:CDS | 30.0% | |
| TTTGATATCTGCTGAGAATT+TGG | + | chr4.2:37396533-37396552 | MS.gene50053:CDS | 30.0% | |
| ! | AGTACGGGTAATAGTTATTT+TGG | + | chr4.2:37397295-37397314 | MS.gene50053:intron | 30.0% |
| ! | CTGTTTCATTTTGTGGAATT+TGG | - | chr4.2:37396272-37396291 | None:intergenic | 30.0% |
| ! | GTTCCTATTGGATATACTTT+TGG | + | chr4.2:37398057-37398076 | MS.gene50053:CDS | 30.0% |
| ! | TTTGAAATGGACTCAATTAG+AGG | + | chr4.2:37398090-37398109 | MS.gene50053:CDS | 30.0% |
| !! | CTTCTACTCTAAAATTACCT+AGG | - | chr4.2:37397620-37397639 | None:intergenic | 30.0% |
| !!! | ATTTGGTTTTCAACACTAAG+AGG | - | chr4.2:37396255-37396274 | None:intergenic | 30.0% |
| !!! | GTATGATTGAAGGACTTTTT+TGG | + | chr4.2:37397832-37397851 | MS.gene50053:intron | 30.0% |
| AACTAATTAGTTGGGGGTAA+GGG | + | chr4.2:37397798-37397817 | MS.gene50053:intron | 35.0% | |
| ACAAGCCAATGAATCAACAT+GGG | + | chr4.2:37397889-37397908 | MS.gene50053:intron | 35.0% | |
| ACTGGAGGAACTAATTAGTT+GGG | + | chr4.2:37397790-37397809 | MS.gene50053:intron | 35.0% | |
| ATAACACAATTAGTCCACCA+TGG | + | chr4.2:37398024-37398043 | MS.gene50053:CDS | 35.0% | |
| ATTAGTTCCAACACTTCCTT+TGG | - | chr4.2:37396483-37396502 | None:intergenic | 35.0% | |
| CTAGACATTTGATACATGTG+GGG | - | chr4.2:37397554-37397573 | None:intergenic | 35.0% | |
| GGCAAGATCATTGAAAAAAG+GGG | + | chr4.2:37396404-37396423 | MS.gene50053:CDS | 35.0% | |
| GTCAAATTTGAGGAATACCT+AGG | + | chr4.2:37397600-37397619 | MS.gene50053:intron | 35.0% | |
| TAACATCAATCCTAAAGTCG+AGG | - | chr4.2:37397179-37397198 | None:intergenic | 35.0% | |
| TCATGCCAACCAAATATTTG+TGG | + | chr4.2:37397766-37397785 | MS.gene50053:intron | 35.0% | |
| TGTGATTAAACCTCGACTTT+AGG | + | chr4.2:37397166-37397185 | MS.gene50053:intron | 35.0% | |
| TTACTCAATGTATGGTCATG+TGG | + | chr4.2:37396374-37396393 | MS.gene50053:CDS | 35.0% | |
| ! | ATTCTGTTGATGGAGTTGAA+GGG | + | chr4.2:37396430-37396449 | MS.gene50053:CDS | 35.0% |
| ! | GCACCAAAAGTATATCCAAT+AGG | - | chr4.2:37398063-37398082 | None:intergenic | 35.0% |
| !! | ATTGGATATACTTTTGGTGC+TGG | + | chr4.2:37398063-37398082 | MS.gene50053:CDS | 35.0% |
| !! | CGACTTTAGGATTGATGTTA+TGG | + | chr4.2:37397179-37397198 | MS.gene50053:intron | 35.0% |
| !! | TATAAGGTGATTTGGTGCTT+TGG | + | chr4.2:37396956-37396975 | MS.gene50053:intron | 35.0% |
| !! | TTTGTTAGTACTGGTACTCA+AGG | + | chr4.2:37396687-37396706 | MS.gene50053:CDS | 35.0% |
| !!! | AGGACTTTTTTGGACTATAG+AGG | + | chr4.2:37397842-37397861 | MS.gene50053:intron | 35.0% |
| !!! | CTACTTGCTGTTTCATTTTG+TGG | - | chr4.2:37396279-37396298 | None:intergenic | 35.0% |
| ATTGATGTTATGGCGAACCA+GGG | + | chr4.2:37397189-37397208 | MS.gene50053:intron | 40.0% | |
| CAACCAAATATTTGTGGCAC+TGG | + | chr4.2:37397772-37397791 | MS.gene50053:intron | 40.0% | |
| CAAGAAACTACAGCGTAAGA+GGG | + | chr4.2:37396717-37396736 | MS.gene50053:intron | 40.0% | |
| CAAGCCAATGAATCAACATG+GGG | + | chr4.2:37397890-37397909 | MS.gene50053:intron | 40.0% | |
| CACAAGCCAATGAATCAACA+TGG | + | chr4.2:37397888-37397907 | MS.gene50053:intron | 40.0% | |
| CACTGGAGGAACTAATTAGT+TGG | + | chr4.2:37397789-37397808 | MS.gene50053:intron | 40.0% | |
| CAGTGCCACAAATATTTGGT+TGG | - | chr4.2:37397774-37397793 | None:intergenic | 40.0% | |
| CCACAAAACAAACTCATGAG+AGG | + | chr4.2:37397125-37397144 | MS.gene50053:intron | 40.0% | |
| CTGGAGGAACTAATTAGTTG+GGG | + | chr4.2:37397791-37397810 | MS.gene50053:intron | 40.0% | |
| GAACTAATTAGTTGGGGGTA+AGG | + | chr4.2:37397797-37397816 | MS.gene50053:intron | 40.0% | |
| GATATCTGCTGAGAATTTGG+TGG | + | chr4.2:37396536-37396555 | MS.gene50053:CDS | 40.0% | |
| GGAAGGAGGAATATAGAAGT+TGG | + | chr4.2:37396977-37396996 | MS.gene50053:intron | 40.0% | |
| GGAATGCTCTATGTTCCTAT+TGG | + | chr4.2:37398045-37398064 | MS.gene50053:CDS | 40.0% | |
| GGTTCATTCTCTTCTGTAGT+TGG | - | chr4.2:37396234-37396253 | None:intergenic | 40.0% | |
| GTACTAACAAAAAACCCAGC+AGG | - | chr4.2:37396678-37396697 | None:intergenic | 40.0% | |
| GTATGGTCATGTGGAATCAT+TGG | + | chr4.2:37396383-37396402 | MS.gene50053:CDS | 40.0% | |
| TGGAGGAACTAATTAGTTGG+GGG | + | chr4.2:37397792-37397811 | MS.gene50053:intron | 40.0% | |
| ! | AAAGGGGTTGATTCTGTTGA+TGG | + | chr4.2:37396420-37396439 | MS.gene50053:CDS | 40.0% |
| ! | GAAATGGACTCAATTAGAGG+TGG | + | chr4.2:37398093-37398112 | MS.gene50053:CDS | 40.0% |
| ! | GATTCTGTTGATGGAGTTGA+AGG | + | chr4.2:37396429-37396448 | MS.gene50053:CDS | 40.0% |
| ! | TAGGAACATAGAGCATTCCA+TGG | - | chr4.2:37398044-37398063 | None:intergenic | 40.0% |
| ! | TGGTGCTGGAATGTTTGAAA+TGG | + | chr4.2:37398077-37398096 | MS.gene50053:CDS | 40.0% |
| ! | TTGGCACTTGCTGAATATCA+AGG | + | chr4.2:37398177-37398196 | MS.gene50053:CDS | 40.0% |
| !! | CATGTTGATTCATTGGCTTG+TGG | - | chr4.2:37397890-37397909 | None:intergenic | 40.0% |
| !!! | CCTCTCATGAGTTTGTTTTG+TGG | - | chr4.2:37397128-37397147 | None:intergenic | 40.0% |
| !!! | GCTGGGTTTTTTGTTAGTAC+TGG | + | chr4.2:37396678-37396697 | MS.gene50053:CDS | 40.0% |
| !!! | GTTGGTGCTTTTTTCTTGCT+TGG | - | chr4.2:37396216-37396235 | None:intergenic | 40.0% |
| AATGTCTAGATCCGTCCATC+TGG | + | chr4.2:37397565-37397584 | MS.gene50053:intron | 45.0% | |
| ACAAGCAACTGAAGCTGAGT+TGG | + | chr4.2:37398158-37398177 | MS.gene50053:CDS | 45.0% | |
| AGCACCTGAGAAAGATGATG+AGG | + | chr4.2:37396506-37396525 | MS.gene50053:CDS | 45.0% | |
| ATTAGAGGTGGAACTCCGTA+TGG | + | chr4.2:37398105-37398124 | MS.gene50053:CDS | 45.0% | |
| CAAAGGGCGGATCTATTCAA+AGG | + | chr4.2:37397223-37397242 | MS.gene50053:intron | 45.0% | |
| CCAAGAAACTACAGCGTAAG+AGG | + | chr4.2:37396716-37396735 | MS.gene50053:intron | 45.0% | |
| CCAATGAATCAACATGGGGT+AGG | + | chr4.2:37397894-37397913 | MS.gene50053:intron | 45.0% | |
| CCTCCAGTGCCACAAATATT+TGG | - | chr4.2:37397778-37397797 | None:intergenic | 45.0% | |
| CCTCTTACGCTGTAGTTTCT+TGG | - | chr4.2:37396719-37396738 | None:intergenic | 45.0% | |
| GATTGATGTTATGGCGAACC+AGG | + | chr4.2:37397188-37397207 | MS.gene50053:intron | 45.0% | |
| GGAACCTCATCATCTTTCTC+AGG | - | chr4.2:37396513-37396532 | None:intergenic | 45.0% | |
| TCTTGAACCATCTCCTGCAT+AGG | - | chr4.2:37398139-37398158 | None:intergenic | 45.0% | |
| TGTGGCTCAATTGACAAGAC+AGG | + | chr4.2:37397067-37397086 | MS.gene50053:intron | 45.0% | |
| TTGATGTTATGGCGAACCAG+GGG | + | chr4.2:37397190-37397209 | MS.gene50053:intron | 45.0% | |
| ! | AAGGGACTTTTCGATTCCAC+GGG | + | chr4.2:37396618-37396637 | MS.gene50053:CDS | 45.0% |
| ! | ACAAGACAGGTTGAGCTTGT+GGG | + | chr4.2:37397080-37397099 | MS.gene50053:intron | 45.0% |
| ! | AGAATTTGGTGGAGGCTGAT+GGG | + | chr4.2:37396547-37396566 | MS.gene50053:CDS | 45.0% |
| ! | ATCTGCTGAGAATTTGGTGG+AGG | + | chr4.2:37396539-37396558 | MS.gene50053:CDS | 45.0% |
| ! | ATTTGAGTTCGCCAGATGGA+CGG | - | chr4.2:37397579-37397598 | None:intergenic | 45.0% |
| ! | CAATGGTGGGGTATGATTGA+AGG | + | chr4.2:37397822-37397841 | MS.gene50053:intron | 45.0% |
| ! | CCAAATATTTGTGGCACTGG+AGG | + | chr4.2:37397775-37397794 | MS.gene50053:intron | 45.0% |
| ! | GAACATAGAGCATTCCATGG+TGG | - | chr4.2:37398041-37398060 | None:intergenic | 45.0% |
| ! | GAAGGGACTTTTCGATTCCA+CGG | + | chr4.2:37396617-37396636 | MS.gene50053:CDS | 45.0% |
| ! | GACTATTTGAGTTCGCCAGA+TGG | - | chr4.2:37397583-37397602 | None:intergenic | 45.0% |
| !! | AGGCTGATGGGTTGTTGTTT+GGG | + | chr4.2:37396559-37396578 | MS.gene50053:CDS | 45.0% |
| !! | AGGTGATTTGGTGCTTTGGA+AGG | + | chr4.2:37396960-37396979 | MS.gene50053:intron | 45.0% |
| !! | CCTACCCCATGTTGATTCAT+TGG | - | chr4.2:37397897-37397916 | None:intergenic | 45.0% |
| !! | GTTAGTACTGGTACTCAAGG+TGG | + | chr4.2:37396690-37396709 | MS.gene50053:CDS | 45.0% |
| !! | TGATTTGGTGCTTTGGAAGG+AGG | + | chr4.2:37396963-37396982 | MS.gene50053:intron | 45.0% |
| ACACAAACCACAAGCACACG+TGG | - | chr4.2:37397747-37397766 | None:intergenic | 50.0% | |
| AGTATGGCGGCACAGATGAA+GGG | + | chr4.2:37396600-37396619 | MS.gene50053:CDS | 50.0% | |
| CAGGGGCGGATCTATTCAAA+GGG | + | chr4.2:37397207-37397226 | MS.gene50053:intron | 50.0% | |
| GCATAGGTTCCAGCACCATA+CGG | - | chr4.2:37398123-37398142 | None:intergenic | 50.0% | |
| GCCATACTACCAAACCTCGT+CGG | - | chr4.2:37396588-37396607 | None:intergenic | 50.0% | |
| TACGATACCACGTGTGCTTG+TGG | + | chr4.2:37397737-37397756 | MS.gene50053:intron | 50.0% | |
| TAGTATGGCGGCACAGATGA+AGG | + | chr4.2:37396599-37396618 | MS.gene50053:CDS | 50.0% | |
| TAGTTGGGGGTAAGGGTCAA+TGG | + | chr4.2:37397805-37397824 | MS.gene50053:intron | 50.0% | |
| TGGAAGGAACAGAAGCTTGC+TGG | + | chr4.2:37396648-37396667 | MS.gene50053:CDS | 50.0% | |
| ! | AGGGACTTTTCGATTCCACG+GGG | + | chr4.2:37396619-37396638 | MS.gene50053:CDS | 50.0% |
| ! | GACAAGACAGGTTGAGCTTG+TGG | + | chr4.2:37397079-37397098 | MS.gene50053:intron | 50.0% |
| ! | GACGAGGTTTGGTAGTATGG+CGG | + | chr4.2:37396587-37396606 | MS.gene50053:CDS | 50.0% |
| ! | GAGAATTTGGTGGAGGCTGA+TGG | + | chr4.2:37396546-37396565 | MS.gene50053:CDS | 50.0% |
| ! | TATGGTGCTGGAACCTATGC+AGG | + | chr4.2:37398123-37398142 | MS.gene50053:CDS | 50.0% |
| ! | TCCGACGAGGTTTGGTAGTA+TGG | + | chr4.2:37396584-37396603 | MS.gene50053:CDS | 50.0% |
| ! | TGTTGTTTGGGTTTCCGACG+AGG | + | chr4.2:37396571-37396590 | MS.gene50053:CDS | 50.0% |
| ! | TTTGGGTTTCCGACGAGGTT+TGG | + | chr4.2:37396576-37396595 | MS.gene50053:CDS | 50.0% |
| !! | AGTACTGGTACTCAAGGTGG+TGG | + | chr4.2:37396693-37396712 | MS.gene50053:CDS | 50.0% |
| !! | GAGGCTGATGGGTTGTTGTT+TGG | + | chr4.2:37396558-37396577 | MS.gene50053:CDS | 50.0% |
| AGGTTGAGCTTGTGGGTGAG+AGG | + | chr4.2:37397087-37397106 | MS.gene50053:intron | 55.0% | |
| ATGTTATGGCGAACCAGGGG+CGG | + | chr4.2:37397193-37397212 | MS.gene50053:intron | 55.0% | |
| CCAGGGGCGGATCTATTCAA+AGG | + | chr4.2:37397206-37397225 | MS.gene50053:intron | 55.0% | |
| CCTTTGAATAGATCCGCCCC+TGG | - | chr4.2:37397209-37397228 | None:intergenic | 55.0% | |
| GCTGGAACCTATGCAGGAGA+TGG | + | chr4.2:37398129-37398148 | MS.gene50053:CDS | 55.0% | |
| GGGCGGATCTATTCAAAGGG+CGG | + | chr4.2:37397210-37397229 | MS.gene50053:intron | 55.0% | |
| TGGGGGTAAGGGTCAATGGT+GGG | + | chr4.2:37397809-37397828 | MS.gene50053:intron | 55.0% | |
| TGTCGTAGAGACGCTGCCAA+AGG | + | chr4.2:37396464-37396483 | MS.gene50053:CDS | 55.0% | |
| TTGGCAGCGTCTCTACGACA+CGG | - | chr4.2:37396464-37396483 | None:intergenic | 55.0% | |
| TTGGGGGTAAGGGTCAATGG+TGG | + | chr4.2:37397808-37397827 | MS.gene50053:intron | 55.0% | |
| ! | GACGCTGCCAAAGGAAGTGT+TGG | + | chr4.2:37396473-37396492 | MS.gene50053:CDS | 55.0% |
| !! | AAGCTTGCTGGTGTTCCTGC+TGG | + | chr4.2:37396660-37396679 | MS.gene50053:CDS | 55.0% |
| !! | AGCTTGCTGGTGTTCCTGCT+GGG | + | chr4.2:37396661-37396680 | MS.gene50053:CDS | 55.0% |
| GGGGGTAAGGGTCAATGGTG+GGG | + | chr4.2:37397810-37397829 | MS.gene50053:intron | 60.0% | |
| GGTGGAACTCCGTATGGTGC+TGG | + | chr4.2:37398111-37398130 | MS.gene50053:CDS | 60.0% | |
| TCGATTCCACGGGGCAGTTG+TGG | + | chr4.2:37396628-37396647 | MS.gene50053:CDS | 60.0% | |
| TTCCACGGGGCAGTTGTGGA+AGG | + | chr4.2:37396632-37396651 | MS.gene50053:CDS | 60.0% | |
| TTCCTTCCACAACTGCCCCG+TGG | - | chr4.2:37396637-37396656 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 37396189 | 37398245 | 37396189 | ID=MS.gene50053 |
| chr4.2 | mRNA | 37396189 | 37398245 | 37396189 | ID=MS.gene50053.t1;Parent=MS.gene50053 |
| chr4.2 | exon | 37396189 | 37396730 | 37396189 | ID=MS.gene50053.t1.exon1;Parent=MS.gene50053.t1 |
| chr4.2 | CDS | 37396189 | 37396730 | 37396189 | ID=cds.MS.gene50053.t1;Parent=MS.gene50053.t1 |
| chr4.2 | exon | 37398014 | 37398245 | 37398014 | ID=MS.gene50053.t1.exon2;Parent=MS.gene50053.t1 |
| chr4.2 | CDS | 37398014 | 37398245 | 37398014 | ID=cds.MS.gene50053.t1;Parent=MS.gene50053.t1 |
| Gene Sequence |
| Protein sequence |
