Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50057.t1 | XP_013456385.1 | 98 | 352 | 7 | 0 | 1 | 352 | 80 | 431 | 9.60E-196 | 692.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50057.t1 | Q9LN62 | 70.4 | 358 | 97 | 3 | 1 | 350 | 71 | 427 | 9.3e-139 | 494.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50057.t1 | A0A072UM19 | 98.0 | 352 | 7 | 0 | 1 | 352 | 80 | 431 | 6.9e-196 | 692.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051996 | MS.gene50057 | 0.814985 | 1.17E-51 | -1.69E-46 |
| MS.gene052223 | MS.gene50057 | 0.814497 | 1.49E-51 | -1.69E-46 |
| MS.gene054742 | MS.gene50057 | 0.813601 | 2.36E-51 | -1.69E-46 |
| MS.gene056330 | MS.gene50057 | 0.803231 | 3.85E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene50057 | 0.842719 | 2.18E-58 | -1.69E-46 |
| MS.gene056682 | MS.gene50057 | 0.851835 | 6.85E-61 | -1.69E-46 |
| MS.gene059891 | MS.gene50057 | 0.810288 | 1.24E-50 | -1.69E-46 |
| MS.gene059892 | MS.gene50057 | 0.821953 | 3.07E-53 | -1.69E-46 |
| MS.gene060087 | MS.gene50057 | 0.812338 | 4.46E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50057.t1 | MTR_4g069350 | 98.011 | 352 | 7 | 0 | 1 | 352 | 80 | 431 | 0.0 | 714 |
| MS.gene50057.t1 | MTR_4g069420 | 87.709 | 358 | 37 | 1 | 2 | 352 | 72 | 429 | 0.0 | 644 |
| MS.gene50057.t1 | MTR_4g069390 | 87.288 | 354 | 43 | 1 | 1 | 352 | 1 | 354 | 0.0 | 630 |
| MS.gene50057.t1 | MTR_4g069300 | 85.994 | 357 | 43 | 1 | 1 | 350 | 80 | 436 | 0.0 | 625 |
| MS.gene50057.t1 | MTR_4g069260 | 82.073 | 357 | 56 | 2 | 1 | 350 | 80 | 435 | 0.0 | 603 |
| MS.gene50057.t1 | MTR_4g069430 | 86.136 | 339 | 45 | 1 | 15 | 351 | 83 | 421 | 0.0 | 581 |
| MS.gene50057.t1 | MTR_1g022025 | 72.254 | 346 | 89 | 1 | 12 | 350 | 82 | 427 | 0.0 | 522 |
| MS.gene50057.t1 | MTR_8g069400 | 28.571 | 203 | 121 | 8 | 69 | 265 | 1378 | 1562 | 9.67e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50057.t1 | AT1G19360 | 70.391 | 358 | 97 | 3 | 1 | 350 | 71 | 427 | 0.0 | 514 |
| MS.gene50057.t1 | AT1G19360 | 70.391 | 358 | 97 | 3 | 1 | 350 | 71 | 427 | 0.0 | 514 |
| MS.gene50057.t1 | AT1G75110 | 68.627 | 357 | 104 | 2 | 1 | 350 | 72 | 427 | 1.74e-180 | 507 |
| MS.gene50057.t1 | AT1G75120 | 68.000 | 350 | 106 | 2 | 1 | 350 | 59 | 402 | 2.76e-172 | 485 |
| MS.gene50057.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 230 | 418 | 1.11e-16 | 81.6 |
| MS.gene50057.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 261 | 449 | 1.47e-16 | 81.3 |
| MS.gene50057.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 261 | 449 | 1.47e-16 | 81.3 |
| MS.gene50057.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 446 | 634 | 2.10e-16 | 80.9 |
| MS.gene50057.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 398 | 586 | 2.14e-16 | 80.9 |
| MS.gene50057.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 477 | 665 | 2.67e-16 | 80.5 |
| MS.gene50057.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 467 | 655 | 2.81e-16 | 80.5 |
Find 76 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGGTCTCTTTGGTAAAA+TGG | 0.121490 | 4.2:-37317119 | None:intergenic |
| CATTCCTTCAATTGAGCTTT+TGG | 0.209327 | 4.2:+37317454 | MS.gene50057:CDS |
| CATAATAACATGACAGCTTA+TGG | 0.285401 | 4.2:+37317329 | MS.gene50057:CDS |
| GTTGTTGAATATTATGTTAA+TGG | 0.296088 | 4.2:+37317725 | MS.gene50057:CDS |
| TATCATTATCCGGGTCTCTT+TGG | 0.318671 | 4.2:-37317127 | None:intergenic |
| AAGGCAACAACTAGGTAATT+AGG | 0.336091 | 4.2:-37317056 | None:intergenic |
| TCATGCTGCTAAAAGAACTA+TGG | 0.353213 | 4.2:+37317574 | MS.gene50057:CDS |
| TCTAATAAATTTGCCAATCT+CGG | 0.356388 | 4.2:-37316933 | None:intergenic |
| TTGTTGAATATTATGTTAAT+GGG | 0.359540 | 4.2:+37317726 | MS.gene50057:CDS |
| CATGTTAAAATCAGAATTAG+TGG | 0.362941 | 4.2:+37316734 | None:intergenic |
| TATACCAACTCTCTTGATAT+TGG | 0.365508 | 4.2:-37317033 | None:intergenic |
| GTTGCTTGCATTAAGTAAAC+AGG | 0.375504 | 4.2:+37316836 | MS.gene50057:CDS |
| AATTCATCAGGAGCAACAAT+AGG | 0.376468 | 4.2:-37316903 | None:intergenic |
| CCGGAGACAGCCGCCCCGTT+TGG | 0.377429 | 4.2:-37317170 | None:intergenic |
| TAATTCACGTGAATAATTAC+CGG | 0.389710 | 4.2:-37317671 | None:intergenic |
| CGAGGTGTGCCATCGGGAAA+TGG | 0.401340 | 4.2:-37317767 | None:intergenic |
| CCGGGTCTCTTTGGTAAAAT+GGG | 0.403345 | 4.2:-37317118 | None:intergenic |
| ACAGTATCAATATCATTATC+CGG | 0.404384 | 4.2:-37317137 | None:intergenic |
| AGAATTAGTGGCACTCTTAT+CGG | 0.411192 | 4.2:+37316746 | MS.gene50057:CDS |
| CTAATAAATTTGCCAATCTC+GGG | 0.411225 | 4.2:-37316932 | None:intergenic |
| CCAAACGGGGCGGCTGTCTC+CGG | 0.412973 | 4.2:+37317170 | MS.gene50057:CDS |
| TGAATTCTTGAACCCGAGAT+TGG | 0.422149 | 4.2:+37316920 | MS.gene50057:CDS |
| TGATCATCTATACCGTGATT+CGG | 0.426234 | 4.2:+37317283 | MS.gene50057:CDS |
| CTCGGGTTCAAGAATTCATC+AGG | 0.455431 | 4.2:-37316915 | None:intergenic |
| AGCTCAATTGAAGGAATGGT+TGG | 0.470800 | 4.2:-37317449 | None:intergenic |
| AAAGAGTTCCTCGTTGAAAA+CGG | 0.480750 | 4.2:-37317522 | None:intergenic |
| TCAACAACTGCTTTCATTCG+CGG | 0.485251 | 4.2:-37317710 | None:intergenic |
| ATTCATCAGGAGCAACAATA+GGG | 0.490622 | 4.2:-37316902 | None:intergenic |
| CCTTCACATTTGAGTTTGCA+AGG | 0.492258 | 4.2:-37316989 | None:intergenic |
| TCACGGTATAGATGATCAAA+AGG | 0.505121 | 4.2:-37317278 | None:intergenic |
| GACTTTCGAAGGGGAATGCA+TGG | 0.506305 | 4.2:+37317492 | MS.gene50057:CDS |
| CAAAAGCTCAATTGAAGGAA+TGG | 0.508580 | 4.2:-37317453 | None:intergenic |
| GGTTATCGAGGTGTGCCATC+GGG | 0.509771 | 4.2:-37317773 | None:intergenic |
| TAGAATACGAAATTTAAGTC+CGG | 0.511442 | 4.2:-37317189 | None:intergenic |
| GTTATTATGACCATCGCTCA+TGG | 0.514082 | 4.2:-37317315 | None:intergenic |
| TAACCTCAGTAAATTGAAAC+CGG | 0.514324 | 4.2:+37317652 | MS.gene50057:CDS |
| CCATCACATCCTGGTTATGA+CGG | 0.520532 | 4.2:+37317548 | MS.gene50057:CDS |
| CGGTCCAAAAGCTCAATTGA+AGG | 0.530180 | 4.2:-37317458 | None:intergenic |
| GATAATGATATTGATACTGT+TGG | 0.535960 | 4.2:+37317140 | MS.gene50057:CDS |
| ATCAGGAGCAACAATAGGGT+TGG | 0.536486 | 4.2:-37316898 | None:intergenic |
| AAAACAGGTGAGGGAGTTGA+CGG | 0.545877 | 4.2:+37316788 | MS.gene50057:CDS |
| GCATGAAGCCCGTCATAACC+AGG | 0.559070 | 4.2:-37317557 | None:intergenic |
| TGAAGGAAATGCTCGAGGTA+TGG | 0.559342 | 4.2:+37317006 | MS.gene50057:CDS |
| CATCACATCCTGGTTATGAC+GGG | 0.559997 | 4.2:+37317549 | MS.gene50057:CDS |
| CAGTATCAATATCATTATCC+GGG | 0.561690 | 4.2:-37317136 | None:intergenic |
| TCAAAGACCATGGGATGGGT+TGG | 0.564496 | 4.2:+37317366 | MS.gene50057:CDS |
| TGTGGCAGCACGACTTTCGA+AGG | 0.565368 | 4.2:+37317481 | MS.gene50057:CDS |
| AGGTTATCGAGGTGTGCCAT+CGG | 0.565382 | 4.2:-37317774 | None:intergenic |
| GAAATGGTTTGAGAGCATCT+TGG | 0.566472 | 4.2:-37317751 | None:intergenic |
| GTCTTCAAAGACCATGGGAT+GGG | 0.567731 | 4.2:+37317362 | MS.gene50057:CDS |
| CTTCACATTTGAGTTTGCAA+GGG | 0.571821 | 4.2:-37316988 | None:intergenic |
| TCGAAAGTCGTGCTGCCACA+CGG | 0.575082 | 4.2:-37317478 | None:intergenic |
| GTTCCTCGTTGAAAACGGCT+TGG | 0.577634 | 4.2:-37317517 | None:intergenic |
| CATCGTCTAAGGCAACAACT+AGG | 0.582454 | 4.2:-37317064 | None:intergenic |
| AACGATGTCTTCAAAGACCA+TGG | 0.583875 | 4.2:+37317356 | MS.gene50057:CDS |
| CCTTGCAAACTCAAATGTGA+AGG | 0.591600 | 4.2:+37316989 | MS.gene50057:CDS |
| GTGGCAGCACGACTTTCGAA+GGG | 0.594024 | 4.2:+37317482 | MS.gene50057:CDS |
| TTCACCAATATCAAGAGAGT+TGG | 0.596908 | 4.2:+37317029 | MS.gene50057:CDS |
| AATGCCTTGACAGTACCAAA+AGG | 0.604979 | 4.2:-37316870 | None:intergenic |
| CCGTCATAACCAGGATGTGA+TGG | 0.606127 | 4.2:-37317548 | None:intergenic |
| TCATTCGCGGAAGCTTATCA+CGG | 0.615337 | 4.2:-37317697 | None:intergenic |
| TGGATTCAACATCCGAATCA+CGG | 0.620285 | 4.2:-37317295 | None:intergenic |
| TGTCTTCAAAGACCATGGGA+TGG | 0.621538 | 4.2:+37317361 | MS.gene50057:CDS |
| TAGTAGACCAACCCATCCCA+TGG | 0.627281 | 4.2:-37317373 | None:intergenic |
| GATGTTGAATCCATGAGCGA+TGG | 0.628620 | 4.2:+37317305 | MS.gene50057:CDS |
| ACGATGTCTTCAAAGACCAT+GGG | 0.646143 | 4.2:+37317357 | MS.gene50057:CDS |
| ACATAGAAACAAGGTTATCG+AGG | 0.646977 | 4.2:-37317785 | None:intergenic |
| CAGGTGAGGGAGTTGACGGA+AGG | 0.652925 | 4.2:+37316792 | MS.gene50057:CDS |
| ACTTTCGAAGGGGAATGCAT+GGG | 0.655092 | 4.2:+37317493 | MS.gene50057:CDS |
| CTACTAACGTTTATACGACG+AGG | 0.660402 | 4.2:+37317390 | MS.gene50057:CDS |
| AAATGTGAAGGAAATGCTCG+AGG | 0.663837 | 4.2:+37317001 | MS.gene50057:CDS |
| TTACCGGTTTCAATTTACTG+AGG | 0.667376 | 4.2:-37317655 | None:intergenic |
| GTTGACGGAAGGAAAAGACC+AGG | 0.673638 | 4.2:+37316803 | MS.gene50057:CDS |
| GCTCTCAAACCATTTCCCGA+TGG | 0.676608 | 4.2:+37317758 | MS.gene50057:CDS |
| TGGCAGCACGACTTTCGAAG+GGG | 0.696691 | 4.2:+37317483 | MS.gene50057:CDS |
| TTCGCGGAAGCTTATCACGG+TGG | 0.727930 | 4.2:-37317694 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTGAATATTATGTTAAT+GGG | + | chr4.2:37317726-37317745 | MS.gene50057:CDS | 15.0% |
| !! | GTTGTTGAATATTATGTTAA+TGG | + | chr4.2:37317725-37317744 | MS.gene50057:CDS | 20.0% |
| ! | ACAGTATCAATATCATTATC+CGG | - | chr4.2:37317140-37317159 | None:intergenic | 25.0% |
| ! | GATAATGATATTGATACTGT+TGG | + | chr4.2:37317140-37317159 | MS.gene50057:CDS | 25.0% |
| ! | TAATTCACGTGAATAATTAC+CGG | - | chr4.2:37317674-37317693 | None:intergenic | 25.0% |
| ! | TAGAATACGAAATTTAAGTC+CGG | - | chr4.2:37317192-37317211 | None:intergenic | 25.0% |
| ! | TCTAATAAATTTGCCAATCT+CGG | - | chr4.2:37316936-37316955 | None:intergenic | 25.0% |
| !!! | AGGATATTTGTTTTCAATTC+TGG | + | chr4.2:37317410-37317429 | MS.gene50057:CDS | 25.0% |
| ACTGTTGGAAAAATTCCAAA+CGG | + | chr4.2:37317155-37317174 | MS.gene50057:CDS | 30.0% | |
| CAGTATCAATATCATTATCC+GGG | - | chr4.2:37317139-37317158 | None:intergenic | 30.0% | |
| CATAATAACATGACAGCTTA+TGG | + | chr4.2:37317329-37317348 | MS.gene50057:CDS | 30.0% | |
| CTAATAAATTTGCCAATCTC+GGG | - | chr4.2:37316935-37316954 | None:intergenic | 30.0% | |
| TAACCTCAGTAAATTGAAAC+CGG | + | chr4.2:37317652-37317671 | MS.gene50057:CDS | 30.0% | |
| TATACCAACTCTCTTGATAT+TGG | - | chr4.2:37317036-37317055 | None:intergenic | 30.0% | |
| TTAAGTAAACAGGAAAAAGC+TGG | + | chr4.2:37316846-37316865 | MS.gene50057:CDS | 30.0% | |
| ! | CTAAGAGAATTTTTGCAGTT+GGG | + | chr4.2:37317209-37317228 | MS.gene50057:CDS | 30.0% |
| ! | TCTAAGAGAATTTTTGCAGT+TGG | + | chr4.2:37317208-37317227 | MS.gene50057:CDS | 30.0% |
| AAAGAGTTCCTCGTTGAAAA+CGG | - | chr4.2:37317525-37317544 | None:intergenic | 35.0% | |
| AAATGCAGAGCTGAAAAAAC+AGG | + | chr4.2:37316773-37316792 | MS.gene50057:CDS | 35.0% | |
| AAGGCAACAACTAGGTAATT+AGG | - | chr4.2:37317059-37317078 | None:intergenic | 35.0% | |
| AATTCATCAGGAGCAACAAT+AGG | - | chr4.2:37316906-37316925 | None:intergenic | 35.0% | |
| AGAATTAGTGGCACTCTTAT+CGG | + | chr4.2:37316746-37316765 | MS.gene50057:CDS | 35.0% | |
| ATTCATCAGGAGCAACAATA+GGG | - | chr4.2:37316905-37316924 | None:intergenic | 35.0% | |
| CAAAAGCTCAATTGAAGGAA+TGG | - | chr4.2:37317456-37317475 | None:intergenic | 35.0% | |
| CTGTTGGAAAAATTCCAAAC+GGG | + | chr4.2:37317156-37317175 | MS.gene50057:CDS | 35.0% | |
| GTTGCTTGCATTAAGTAAAC+AGG | + | chr4.2:37316836-37316855 | MS.gene50057:CDS | 35.0% | |
| TCACGGTATAGATGATCAAA+AGG | - | chr4.2:37317281-37317300 | None:intergenic | 35.0% | |
| TCATGCTGCTAAAAGAACTA+TGG | + | chr4.2:37317574-37317593 | MS.gene50057:CDS | 35.0% | |
| TGATCATCTATACCGTGATT+CGG | + | chr4.2:37317283-37317302 | MS.gene50057:CDS | 35.0% | |
| TGTTGGAAAAATTCCAAACG+GGG | + | chr4.2:37317157-37317176 | MS.gene50057:CDS | 35.0% | |
| TTCACCAATATCAAGAGAGT+TGG | + | chr4.2:37317029-37317048 | MS.gene50057:CDS | 35.0% | |
| ! | CATTCCTTCAATTGAGCTTT+TGG | + | chr4.2:37317454-37317473 | MS.gene50057:CDS | 35.0% |
| ! | CTTCACATTTGAGTTTGCAA+GGG | - | chr4.2:37316991-37317010 | None:intergenic | 35.0% |
| ! | TTTTGCAATCTCATCGTCTA+AGG | - | chr4.2:37317078-37317097 | None:intergenic | 35.0% |
| !! | TTACCGGTTTCAATTTACTG+AGG | - | chr4.2:37317658-37317677 | None:intergenic | 35.0% |
| AAATGTGAAGGAAATGCTCG+AGG | + | chr4.2:37317001-37317020 | MS.gene50057:CDS | 40.0% | |
| AACGATGTCTTCAAAGACCA+TGG | + | chr4.2:37317356-37317375 | MS.gene50057:CDS | 40.0% | |
| AATGCCTTGACAGTACCAAA+AGG | - | chr4.2:37316873-37316892 | None:intergenic | 40.0% | |
| ACGATGTCTTCAAAGACCAT+GGG | + | chr4.2:37317357-37317376 | MS.gene50057:CDS | 40.0% | |
| AGAGCTGAAAAAACAGGTGA+GGG | + | chr4.2:37316779-37316798 | MS.gene50057:CDS | 40.0% | |
| AGCTCAATTGAAGGAATGGT+TGG | - | chr4.2:37317452-37317471 | None:intergenic | 40.0% | |
| CCTTGCAAACTCAAATGTGA+AGG | + | chr4.2:37316989-37317008 | MS.gene50057:CDS | 40.0% | |
| CTACTAACGTTTATACGACG+AGG | + | chr4.2:37317390-37317409 | MS.gene50057:CDS | 40.0% | |
| GTTATTATGACCATCGCTCA+TGG | - | chr4.2:37317318-37317337 | None:intergenic | 40.0% | |
| TATCATTATCCGGGTCTCTT+TGG | - | chr4.2:37317130-37317149 | None:intergenic | 40.0% | |
| TCAACAACTGCTTTCATTCG+CGG | - | chr4.2:37317713-37317732 | None:intergenic | 40.0% | |
| TGAATTCTTGAACCCGAGAT+TGG | + | chr4.2:37316920-37316939 | MS.gene50057:CDS | 40.0% | |
| TGGATTCAACATCCGAATCA+CGG | - | chr4.2:37317298-37317317 | None:intergenic | 40.0% | |
| ! | CCTTCACATTTGAGTTTGCA+AGG | - | chr4.2:37316992-37317011 | None:intergenic | 40.0% |
| ! | CTCTTTTATCCATCACATCC+TGG | + | chr4.2:37317539-37317558 | MS.gene50057:CDS | 40.0% |
| ! | TGAACAGCAGAGTTCTTTTC+AGG | + | chr4.2:37317612-37317631 | MS.gene50057:CDS | 40.0% |
| !! | GAAATGGTTTGAGAGCATCT+TGG | - | chr4.2:37317754-37317773 | None:intergenic | 40.0% |
| !!! | CAAGCAACTTTTTTTCAGCC+TGG | - | chr4.2:37316824-37316843 | None:intergenic | 40.0% |
| AAAACAGGTGAGGGAGTTGA+CGG | + | chr4.2:37316788-37316807 | MS.gene50057:CDS | 45.0% | |
| ACTTTCGAAGGGGAATGCAT+GGG | + | chr4.2:37317493-37317512 | MS.gene50057:CDS | 45.0% | |
| ATCAGGAGCAACAATAGGGT+TGG | - | chr4.2:37316901-37316920 | None:intergenic | 45.0% | |
| CAGAGCTGAAAAAACAGGTG+AGG | + | chr4.2:37316778-37316797 | MS.gene50057:CDS | 45.0% | |
| CATCACATCCTGGTTATGAC+GGG | + | chr4.2:37317549-37317568 | MS.gene50057:CDS | 45.0% | |
| CCATCACATCCTGGTTATGA+CGG | + | chr4.2:37317548-37317567 | MS.gene50057:CDS | 45.0% | |
| CCGGGTCTCTTTGGTAAAAT+GGG | - | chr4.2:37317121-37317140 | None:intergenic | 45.0% | |
| CGGTCCAAAAGCTCAATTGA+AGG | - | chr4.2:37317461-37317480 | None:intergenic | 45.0% | |
| CTCGGGTTCAAGAATTCATC+AGG | - | chr4.2:37316918-37316937 | None:intergenic | 45.0% | |
| GATGTTGAATCCATGAGCGA+TGG | + | chr4.2:37317305-37317324 | MS.gene50057:CDS | 45.0% | |
| GTCTTCAAAGACCATGGGAT+GGG | + | chr4.2:37317362-37317381 | MS.gene50057:CDS | 45.0% | |
| TCATTCGCGGAAGCTTATCA+CGG | - | chr4.2:37317700-37317719 | None:intergenic | 45.0% | |
| TCCGGGTCTCTTTGGTAAAA+TGG | - | chr4.2:37317122-37317141 | None:intergenic | 45.0% | |
| TGAAGGAAATGCTCGAGGTA+TGG | + | chr4.2:37317006-37317025 | MS.gene50057:CDS | 45.0% | |
| TGGAAAAATTCCAAACGGGG+CGG | + | chr4.2:37317160-37317179 | MS.gene50057:CDS | 45.0% | |
| TGTCTTCAAAGACCATGGGA+TGG | + | chr4.2:37317361-37317380 | MS.gene50057:CDS | 45.0% | |
| ! | AATTGAGCTTTTGGACCGTG+TGG | + | chr4.2:37317463-37317482 | MS.gene50057:CDS | 45.0% |
| ! | CAGGAAAAAGCTGGACCTTT+TGG | + | chr4.2:37316855-37316874 | MS.gene50057:CDS | 45.0% |
| ! | CATCGTCTAAGGCAACAACT+AGG | - | chr4.2:37317067-37317086 | None:intergenic | 45.0% |
| ! | CCCATTTTACCAAAGAGACC+CGG | + | chr4.2:37317118-37317137 | MS.gene50057:CDS | 45.0% |
| ! | TGGACCTTTTGGTACTGTCA+AGG | + | chr4.2:37316866-37316885 | MS.gene50057:CDS | 45.0% |
| !! | GAGTTCTTTTCAGGACAGTG+AGG | + | chr4.2:37317621-37317640 | MS.gene50057:CDS | 45.0% |
| CCGTCATAACCAGGATGTGA+TGG | - | chr4.2:37317551-37317570 | None:intergenic | 50.0% | |
| GACTTTCGAAGGGGAATGCA+TGG | + | chr4.2:37317492-37317511 | MS.gene50057:CDS | 50.0% | |
| GCTCTCAAACCATTTCCCGA+TGG | + | chr4.2:37317758-37317777 | MS.gene50057:CDS | 50.0% | |
| GTTCCTCGTTGAAAACGGCT+TGG | - | chr4.2:37317520-37317539 | None:intergenic | 50.0% | |
| GTTGACGGAAGGAAAAGACC+AGG | + | chr4.2:37316803-37316822 | MS.gene50057:CDS | 50.0% | |
| TAGTAGACCAACCCATCCCA+TGG | - | chr4.2:37317376-37317395 | None:intergenic | 50.0% | |
| TCAAAGACCATGGGATGGGT+TGG | + | chr4.2:37317366-37317385 | MS.gene50057:CDS | 50.0% | |
| GCATGAAGCCCGTCATAACC+AGG | - | chr4.2:37317560-37317579 | None:intergenic | 55.0% | |
| GTGGCAGCACGACTTTCGAA+GGG | + | chr4.2:37317482-37317501 | MS.gene50057:CDS | 55.0% | |
| TCGAAAGTCGTGCTGCCACA+CGG | - | chr4.2:37317481-37317500 | None:intergenic | 55.0% | |
| TGGCAGCACGACTTTCGAAG+GGG | + | chr4.2:37317483-37317502 | MS.gene50057:CDS | 55.0% | |
| TGTGGCAGCACGACTTTCGA+AGG | + | chr4.2:37317481-37317500 | MS.gene50057:CDS | 55.0% | |
| TTCGCGGAAGCTTATCACGG+TGG | - | chr4.2:37317697-37317716 | None:intergenic | 55.0% | |
| !! | GGACCAAGCCGTTTTCAACG+AGG | + | chr4.2:37317514-37317533 | MS.gene50057:CDS | 55.0% |
| CAGGTGAGGGAGTTGACGGA+AGG | + | chr4.2:37316792-37316811 | MS.gene50057:CDS | 60.0% | |
| CGAGGTGTGCCATCGGGAAA+TGG | - | chr4.2:37317770-37317789 | None:intergenic | 60.0% | |
| CCAAACGGGGCGGCTGTCTC+CGG | + | chr4.2:37317170-37317189 | MS.gene50057:CDS | 70.0% | |
| CCGGAGACAGCCGCCCCGTT+TGG | - | chr4.2:37317173-37317192 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 37316735 | 37317793 | 37316735 | ID=MS.gene50057 |
| chr4.2 | mRNA | 37316735 | 37317793 | 37316735 | ID=MS.gene50057.t1;Parent=MS.gene50057 |
| chr4.2 | exon | 37316735 | 37317793 | 37316735 | ID=MS.gene50057.t1.exon1;Parent=MS.gene50057.t1 |
| chr4.2 | CDS | 37316735 | 37317793 | 37316735 | ID=cds.MS.gene50057.t1;Parent=MS.gene50057.t1 |
| Gene Sequence |
| Protein sequence |
