Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50093.t1 | XP_003604114.1 | 98.6 | 642 | 9 | 0 | 1 | 642 | 1 | 642 | 0.00E+00 | 1261.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50093.t1 | Q9LJE5 | 40.4 | 554 | 262 | 13 | 59 | 561 | 72 | 608 | 1.7e-93 | 345.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50093.t1 | G7JUF0 | 98.6 | 642 | 9 | 0 | 1 | 642 | 1 | 642 | 0.0e+00 | 1261.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050330 | MS.gene50093 | 0.830245 | 3.27E-55 | -1.69E-46 |
MS.gene050558 | MS.gene50093 | -0.807437 | 5.06E-50 | -1.69E-46 |
MS.gene05119 | MS.gene50093 | 0.803047 | 4.20E-49 | -1.69E-46 |
MS.gene052207 | MS.gene50093 | -0.8137 | 2.24E-51 | -1.69E-46 |
MS.gene052358 | MS.gene50093 | 0.806778 | 6.97E-50 | -1.69E-46 |
MS.gene052361 | MS.gene50093 | 0.817171 | 3.79E-52 | -1.69E-46 |
MS.gene053836 | MS.gene50093 | -0.810121 | 1.35E-50 | -1.69E-46 |
MS.gene056069 | MS.gene50093 | 0.855577 | 5.75E-62 | -1.69E-46 |
MS.gene057121 | MS.gene50093 | -0.802594 | 5.21E-49 | -1.69E-46 |
MS.gene057439 | MS.gene50093 | -0.817646 | 2.96E-52 | -1.69E-46 |
MS.gene059033 | MS.gene50093 | 0.814746 | 1.32E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50093.t1 | MTR_4g005110 | 98.598 | 642 | 9 | 0 | 1 | 642 | 1 | 642 | 0.0 | 1299 |
MS.gene50093.t1 | MTR_8g088390 | 42.940 | 517 | 242 | 17 | 82 | 563 | 26 | 524 | 4.38e-117 | 362 |
MS.gene50093.t1 | MTR_8g088390 | 42.940 | 517 | 242 | 17 | 82 | 563 | 91 | 589 | 1.36e-116 | 363 |
MS.gene50093.t1 | MTR_4g123630 | 41.132 | 530 | 252 | 15 | 54 | 561 | 11 | 502 | 6.60e-100 | 319 |
MS.gene50093.t1 | MTR_2g063460 | 65.487 | 226 | 72 | 2 | 341 | 562 | 322 | 545 | 9.28e-96 | 306 |
MS.gene50093.t1 | MTR_2g063460 | 65.487 | 226 | 72 | 2 | 341 | 562 | 320 | 543 | 1.09e-95 | 306 |
MS.gene50093.t1 | MTR_2g032660 | 40.307 | 521 | 268 | 17 | 54 | 561 | 46 | 536 | 1.72e-95 | 308 |
MS.gene50093.t1 | MTR_7g085500 | 39.299 | 542 | 244 | 17 | 83 | 563 | 79 | 596 | 7.66e-94 | 303 |
MS.gene50093.t1 | MTR_6g032970 | 46.847 | 333 | 144 | 6 | 252 | 565 | 254 | 572 | 8.65e-86 | 281 |
MS.gene50093.t1 | MTR_2g005840 | 48.837 | 258 | 109 | 5 | 309 | 562 | 184 | 422 | 2.99e-71 | 238 |
MS.gene50093.t1 | MTR_2g005840 | 48.837 | 258 | 109 | 5 | 309 | 562 | 215 | 453 | 1.33e-70 | 238 |
MS.gene50093.t1 | MTR_2g029540 | 26.316 | 152 | 101 | 3 | 395 | 542 | 259 | 403 | 3.95e-12 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50093.t1 | AT3G13060 | 56.780 | 590 | 222 | 16 | 36 | 611 | 46 | 616 | 0.0 | 627 |
MS.gene50093.t1 | AT3G13060 | 56.780 | 590 | 222 | 16 | 36 | 611 | 24 | 594 | 0.0 | 627 |
MS.gene50093.t1 | AT3G13060 | 56.780 | 590 | 222 | 16 | 36 | 611 | 36 | 606 | 0.0 | 627 |
MS.gene50093.t1 | AT3G13060 | 56.780 | 590 | 222 | 16 | 36 | 611 | 24 | 594 | 0.0 | 627 |
MS.gene50093.t1 | AT3G13060 | 55.686 | 510 | 195 | 14 | 36 | 533 | 46 | 536 | 0.0 | 524 |
MS.gene50093.t1 | AT3G13060 | 50.939 | 426 | 178 | 14 | 36 | 449 | 46 | 452 | 6.12e-124 | 375 |
MS.gene50093.t1 | AT3G13460 | 40.429 | 559 | 259 | 15 | 58 | 562 | 68 | 606 | 7.74e-117 | 363 |
MS.gene50093.t1 | AT3G13460 | 40.429 | 559 | 259 | 15 | 58 | 562 | 71 | 609 | 9.85e-117 | 363 |
MS.gene50093.t1 | AT3G13460 | 40.429 | 559 | 259 | 15 | 58 | 562 | 70 | 608 | 1.11e-116 | 363 |
MS.gene50093.t1 | AT1G55500 | 41.633 | 502 | 251 | 15 | 85 | 557 | 45 | 533 | 8.81e-105 | 329 |
MS.gene50093.t1 | AT1G55500 | 41.633 | 502 | 251 | 15 | 85 | 557 | 88 | 576 | 1.47e-104 | 329 |
MS.gene50093.t1 | AT1G55500 | 41.633 | 502 | 251 | 15 | 85 | 557 | 88 | 576 | 1.57e-104 | 330 |
MS.gene50093.t1 | AT1G55500 | 41.633 | 502 | 251 | 15 | 85 | 557 | 88 | 576 | 2.33e-104 | 329 |
MS.gene50093.t1 | AT1G55500 | 41.529 | 484 | 242 | 14 | 103 | 557 | 49 | 520 | 6.86e-100 | 316 |
MS.gene50093.t1 | AT1G55500 | 41.529 | 484 | 242 | 14 | 103 | 557 | 92 | 563 | 1.76e-99 | 316 |
MS.gene50093.t1 | AT1G27960 | 57.249 | 269 | 100 | 3 | 333 | 601 | 207 | 460 | 2.68e-99 | 311 |
MS.gene50093.t1 | AT1G27960 | 57.621 | 269 | 99 | 3 | 333 | 601 | 281 | 534 | 3.12e-98 | 311 |
MS.gene50093.t1 | AT3G17330 | 39.752 | 483 | 225 | 13 | 86 | 561 | 17 | 440 | 1.85e-96 | 308 |
MS.gene50093.t1 | AT3G17330 | 39.752 | 483 | 225 | 13 | 86 | 561 | 17 | 440 | 1.85e-96 | 308 |
MS.gene50093.t1 | AT5G58190 | 39.250 | 507 | 212 | 14 | 75 | 565 | 79 | 505 | 1.49e-92 | 296 |
MS.gene50093.t1 | AT5G58190 | 39.250 | 507 | 212 | 14 | 75 | 565 | 80 | 506 | 1.63e-92 | 296 |
MS.gene50093.t1 | AT5G61020 | 58.159 | 239 | 76 | 3 | 340 | 562 | 196 | 426 | 1.34e-90 | 290 |
MS.gene50093.t1 | AT5G61020 | 58.159 | 239 | 76 | 3 | 340 | 562 | 198 | 428 | 1.64e-90 | 290 |
MS.gene50093.t1 | AT3G17330 | 59.641 | 223 | 85 | 2 | 344 | 561 | 116 | 338 | 1.58e-89 | 287 |
MS.gene50093.t1 | AT1G79270 | 60.648 | 216 | 75 | 3 | 356 | 561 | 261 | 476 | 7.00e-86 | 278 |
MS.gene50093.t1 | AT1G79270 | 60.648 | 216 | 75 | 3 | 356 | 561 | 261 | 476 | 7.00e-86 | 278 |
MS.gene50093.t1 | AT1G79270 | 60.648 | 216 | 75 | 3 | 356 | 561 | 261 | 476 | 7.00e-86 | 278 |
MS.gene50093.t1 | AT1G79270 | 60.648 | 216 | 75 | 3 | 356 | 561 | 276 | 491 | 1.37e-85 | 278 |
MS.gene50093.t1 | AT3G03950 | 54.098 | 244 | 106 | 2 | 328 | 567 | 176 | 417 | 1.52e-85 | 275 |
MS.gene50093.t1 | AT3G03950 | 54.098 | 244 | 106 | 2 | 328 | 567 | 173 | 414 | 1.76e-85 | 274 |
MS.gene50093.t1 | AT3G03950 | 54.098 | 244 | 106 | 2 | 328 | 567 | 172 | 413 | 1.78e-85 | 274 |
MS.gene50093.t1 | AT1G48110 | 58.850 | 226 | 88 | 2 | 341 | 561 | 266 | 491 | 1.43e-84 | 278 |
MS.gene50093.t1 | AT1G48110 | 58.850 | 226 | 88 | 2 | 341 | 561 | 266 | 491 | 1.43e-84 | 278 |
MS.gene50093.t1 | AT1G09810 | 54.701 | 234 | 99 | 4 | 337 | 566 | 134 | 364 | 4.11e-81 | 263 |
MS.gene50093.t1 | AT1G09810 | 54.701 | 234 | 99 | 4 | 337 | 566 | 176 | 406 | 6.68e-81 | 264 |
MS.gene50093.t1 | AT1G09810 | 54.701 | 234 | 99 | 4 | 337 | 566 | 157 | 387 | 7.53e-81 | 263 |
MS.gene50093.t1 | AT3G13460 | 33.857 | 446 | 221 | 15 | 58 | 449 | 71 | 496 | 1.57e-51 | 186 |
MS.gene50093.t1 | AT1G27960 | 54.237 | 118 | 41 | 2 | 333 | 450 | 281 | 385 | 8.11e-29 | 120 |
MS.gene50093.t1 | AT4G11970 | 31.169 | 154 | 94 | 3 | 395 | 543 | 72 | 218 | 3.74e-16 | 81.3 |
MS.gene50093.t1 | AT4G11970 | 31.169 | 154 | 94 | 3 | 395 | 543 | 72 | 218 | 5.92e-16 | 80.5 |
MS.gene50093.t1 | AT4G11970 | 31.169 | 154 | 94 | 3 | 395 | 543 | 72 | 218 | 7.48e-16 | 80.5 |
MS.gene50093.t1 | AT4G11970 | 31.169 | 154 | 94 | 3 | 395 | 543 | 72 | 218 | 4.55e-15 | 78.6 |
MS.gene50093.t1 | AT4G11970 | 31.169 | 154 | 94 | 3 | 395 | 543 | 72 | 218 | 4.55e-15 | 78.6 |
Find 192 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGGAGGCTCGGCCATTTC+TGG | 0.126584 | 4.3:-89796652 | MS.gene50093:CDS |
ATTGGCTCTGTCAGGTCATT+TGG | 0.209578 | 4.3:-89797447 | MS.gene50093:CDS |
ATCTGATCCTTCATGTTATC+TGG | 0.270592 | 4.3:+89803056 | None:intergenic |
ACCGGGTTTAAATACATTAC+TGG | 0.284768 | 4.3:+89793802 | None:intergenic |
TATCCTTCATATGTCAATAA+TGG | 0.290554 | 4.3:-89798052 | MS.gene50093:CDS |
ACAAGTCAGTCAGGATCTTT+TGG | 0.312127 | 4.3:-89799887 | MS.gene50093:CDS |
CAGCGATCTTTGTATGGGTT+TGG | 0.314350 | 4.3:-89796727 | MS.gene50093:CDS |
TTGACAAGAGCGTGGACTTC+TGG | 0.317782 | 4.3:-89795477 | MS.gene50093:CDS |
GAATTAAGATATGGTAAGTT+TGG | 0.318055 | 4.3:+89797741 | None:intergenic |
TTGGCTCTGTCAGGTCATTT+GGG | 0.318903 | 4.3:-89797446 | MS.gene50093:CDS |
CATCAACAGCGATCTTTGTA+TGG | 0.319503 | 4.3:-89796733 | MS.gene50093:CDS |
GTAAGCTCTGGCTGAGAAAC+TGG | 0.323636 | 4.3:+89797711 | None:intergenic |
CCTCTGCCTTTCTGAAGGTT+TGG | 0.326875 | 4.3:+89797509 | None:intergenic |
ATCCTTCATATGTCAATAAT+GGG | 0.329319 | 4.3:-89798051 | MS.gene50093:CDS |
GCCTGGGGTGCATACACATT+GGG | 0.346366 | 4.3:+89799836 | None:intergenic |
TCTAACCCCGGTTCTAGCTT+TGG | 0.348886 | 4.3:-89796670 | MS.gene50093:CDS |
CATCTTGTTTCTCCTTTGCT+TGG | 0.349280 | 4.3:+89796260 | None:intergenic |
CAGGCCCAGGCTTTCTACTA+TGG | 0.352152 | 4.3:-89799818 | MS.gene50093:CDS |
TCAACAGTCTTGCCACTAAC+TGG | 0.357017 | 4.3:+89793745 | None:intergenic |
GAAGGCAAAGGCGAGGTAAC+CGG | 0.360735 | 4.3:+89797843 | None:intergenic |
AGAGCATTAAATATGGTGTC+TGG | 0.382981 | 4.3:-89796327 | MS.gene50093:CDS |
TTGAAATCAGTGGCAAAATC+TGG | 0.385317 | 4.3:+89796400 | None:intergenic |
GGCGAGGTAACCGGGGAATA+TGG | 0.385914 | 4.3:+89797852 | None:intergenic |
GAATCTCAACAAGGATTTGA+TGG | 0.390754 | 4.3:-89797564 | MS.gene50093:CDS |
TTGTAATAAGGTGGGGTGTA+TGG | 0.390994 | 4.3:+89797780 | None:intergenic |
CATAGTAGAAAGCCTGGGCC+TGG | 0.397210 | 4.3:+89799819 | None:intergenic |
GGAACCAGATGGTTGTAATA+AGG | 0.400527 | 4.3:+89797768 | None:intergenic |
GTTCATAAGAGCATTAAATA+TGG | 0.400693 | 4.3:-89796334 | MS.gene50093:CDS |
TCTAACTTCCTGTTTCCATT+TGG | 0.400771 | 4.3:+89796295 | None:intergenic |
TCTGAAAATAACGCTATTGA+TGG | 0.400801 | 4.3:-89796475 | MS.gene50093:CDS |
CTGCCTTTCTGAAGGTTTGG+AGG | 0.400845 | 4.3:+89797512 | None:intergenic |
CGAGCCTCCAAAGCTAGAAC+CGG | 0.407892 | 4.3:+89796663 | None:intergenic |
GGATCCGGTTCAAACCCTTA+TGG | 0.407920 | 4.3:-89796706 | MS.gene50093:CDS |
CCTTGCCTTTCGTTCTTGCA+TGG | 0.410423 | 4.3:+89794006 | None:intergenic |
TCTGTTCCTCAACAGCCAAT+TGG | 0.412741 | 4.3:-89797465 | MS.gene50093:CDS |
CTGGCCTTAGTGCTAATGAT+AGG | 0.414141 | 4.3:-89796633 | MS.gene50093:CDS |
AGGAGGCTGTGATGGTGGTT+GGG | 0.419576 | 4.3:+89803371 | None:intergenic |
CTGAAGGAACCAGGGGCTAC+AGG | 0.423084 | 4.3:+89797594 | None:intergenic |
GAGGAGGCTGTGATGGTGGT+TGG | 0.428984 | 4.3:+89803370 | None:intergenic |
TAATGCCTACTGGATTAGTT+GGG | 0.430213 | 4.3:-89793970 | MS.gene50093:CDS |
TCTTTGTATGGGTTTGGATC+CGG | 0.431719 | 4.3:-89796721 | MS.gene50093:CDS |
ATAATGCCTACTGGATTAGT+TGG | 0.431965 | 4.3:-89793971 | MS.gene50093:CDS |
TATGGTCCATATGGCATTTG+TGG | 0.432804 | 4.3:+89797870 | None:intergenic |
AACAGCCAATTGGCTCTGTC+AGG | 0.440837 | 4.3:-89797455 | MS.gene50093:CDS |
CCTCGCCTTTGCCTTCTGTA+GGG | 0.441420 | 4.3:-89797836 | MS.gene50093:CDS |
CGGTTCTAGCTTTGGAGGCT+CGG | 0.441575 | 4.3:-89796662 | MS.gene50093:CDS |
ATAGTAGAAAGCCTGGGCCT+GGG | 0.443380 | 4.3:+89799820 | None:intergenic |
AAAATAGCAGACGGCACGGC+AGG | 0.444683 | 4.3:-89796594 | MS.gene50093:CDS |
CTTCAACGCAAACCAGTTAG+TGG | 0.448154 | 4.3:-89793757 | None:intergenic |
AAGGCAAAGGCGAGGTAACC+GGG | 0.449724 | 4.3:+89797844 | None:intergenic |
GCCGGTTGAGTGATTCATCT+TGG | 0.454411 | 4.3:+89796422 | None:intergenic |
AGGTCATTTGGGCTGAGTGC+TGG | 0.455482 | 4.3:-89797435 | MS.gene50093:CDS |
CGGGATATCACAAGTCAGTC+AGG | 0.458558 | 4.3:-89799896 | MS.gene50093:CDS |
GAGAGATAGCCTCTACCATA+AGG | 0.461221 | 4.3:+89796691 | None:intergenic |
CTAGTACACCAAATGGAAAC+AGG | 0.461821 | 4.3:-89796303 | MS.gene50093:CDS |
ATTAGCACTAAGGCCAGAAA+TGG | 0.464972 | 4.3:+89796639 | None:intergenic |
GGCCTGGGGTGCATACACAT+TGG | 0.466957 | 4.3:+89799835 | None:intergenic |
TGTGTATGCACCCCAGGCCC+AGG | 0.472090 | 4.3:-89799831 | MS.gene50093:CDS |
GTATCTCGACTGTTGGTAAC+GGG | 0.473588 | 4.3:+89795349 | None:intergenic |
CTTGCTGGTCAATGCCTAGC+AGG | 0.474459 | 4.3:+89797685 | None:intergenic |
ACCGGGGAATATGGTCCATA+TGG | 0.476074 | 4.3:+89797861 | None:intergenic |
GCTTTGAAGCCCTTGGTCCT+CGG | 0.478289 | 4.3:+89796515 | None:intergenic |
CCCACCTTATTACAACCATC+TGG | 0.479406 | 4.3:-89797772 | MS.gene50093:CDS |
ATGTGACGAAACTGACTGTT+CGG | 0.481473 | 4.3:+89795397 | None:intergenic |
CAAAGTAGCATAATGCCTAC+TGG | 0.481769 | 4.3:-89793980 | MS.gene50093:CDS |
ATTTGGGCTGAGTGCTGGAA+TGG | 0.481872 | 4.3:-89797430 | MS.gene50093:intron |
TCCAAGATGAATCACTCAAC+CGG | 0.484917 | 4.3:-89796423 | MS.gene50093:CDS |
AACCCCGGTTCTAGCTTTGG+AGG | 0.486883 | 4.3:-89796667 | MS.gene50093:CDS |
TTTATTATGTGCCACTTCAC+AGG | 0.487446 | 4.3:+89795427 | None:intergenic |
GGATTTGATGGATCAAGATC+TGG | 0.492200 | 4.3:-89797552 | MS.gene50093:CDS |
GTCTGGGCTAGTACACCAAA+TGG | 0.493633 | 4.3:-89796310 | MS.gene50093:CDS |
ACCTCGCCTTTGCCTTCTGT+AGG | 0.494810 | 4.3:-89797837 | MS.gene50093:CDS |
TTGACAATGGCAATGGCGAA+TGG | 0.496628 | 4.3:-89798081 | MS.gene50093:CDS |
TCATGAAAGCTGAAGGAACC+AGG | 0.496773 | 4.3:+89797585 | None:intergenic |
GTTCTGCGGAGTAGCTGAAA+TGG | 0.500293 | 4.3:-89795515 | MS.gene50093:CDS |
AACCTCCATAGTAGAAAGCC+TGG | 0.500391 | 4.3:+89799813 | None:intergenic |
AGTATCTCGACTGTTGGTAA+CGG | 0.502066 | 4.3:+89795348 | None:intergenic |
AGAGATAGCCTCTACCATAA+GGG | 0.503704 | 4.3:+89796692 | None:intergenic |
TGAAACTGATACGTCTATCC+TGG | 0.503740 | 4.3:-89794062 | MS.gene50093:CDS |
GAGTGATTCATCTTGGAACT+TGG | 0.506959 | 4.3:+89796429 | None:intergenic |
GGAAGCTTTCCTGTAGCCCC+TGG | 0.507011 | 4.3:-89797603 | MS.gene50093:CDS |
GGAGTCGGTGAATTAAGATA+TGG | 0.508399 | 4.3:+89797732 | None:intergenic |
TCCCAATGTGTATGCACCCC+AGG | 0.510018 | 4.3:-89799837 | MS.gene50093:CDS |
CCTAGCAGGTTAGTAAGCTC+TGG | 0.512997 | 4.3:+89797699 | None:intergenic |
CGATCAAGAGGAGGCTGTGA+TGG | 0.513546 | 4.3:+89803363 | None:intergenic |
CTCGCCTTTGCCTTCTGTAG+GGG | 0.514641 | 4.3:-89797835 | MS.gene50093:CDS |
TTAAGATATGGTAAGTTTGG+AGG | 0.518703 | 4.3:+89797744 | None:intergenic |
CATATCCAGAATGGAAAACA+AGG | 0.521585 | 4.3:+89797901 | None:intergenic |
ATCAACAGCGATCTTTGTAT+GGG | 0.525990 | 4.3:-89796732 | MS.gene50093:CDS |
TGAGGAACAGAAGGAGATAG+AGG | 0.527342 | 4.3:+89797477 | None:intergenic |
ACGGAAGGATAACTTGCTCT+TGG | 0.528712 | 4.3:+89797642 | None:intergenic |
ATGGTCCATATGGCATTTGT+GGG | 0.529252 | 4.3:+89797871 | None:intergenic |
AGAGCAAGTTATCCTTCCGT+TGG | 0.529664 | 4.3:-89797639 | MS.gene50093:CDS |
TTCAACCCACAAATGCCATA+TGG | 0.532099 | 4.3:-89797876 | MS.gene50093:CDS |
AGCTCCTATCATTAGCACTA+AGG | 0.532391 | 4.3:+89796629 | None:intergenic |
GATCAAGATCTGGTGGACTC+TGG | 0.533103 | 4.3:-89797542 | MS.gene50093:CDS |
AGAGGGTAACTTATCTCTGT+TGG | 0.537486 | 4.3:+89793835 | None:intergenic |
AGTCACTAAAATGCCTTCAC+CGG | 0.539918 | 4.3:+89793784 | None:intergenic |
CAACAACTATAGGTCATTCA+CGG | 0.541211 | 4.3:-89799916 | MS.gene50093:CDS |
AGATATGGTAAGTTTGGAGG+AGG | 0.541244 | 4.3:+89797747 | None:intergenic |
AATGACCTGACAGAGCCAAT+TGG | 0.541718 | 4.3:+89797450 | None:intergenic |
TCCCAGGGTACAACAACTAT+AGG | 0.542511 | 4.3:-89799926 | MS.gene50093:intron |
CTAACTGGTTTGCGTTGAAG+AGG | 0.542548 | 4.3:+89793760 | None:intergenic |
GTCACTAAAATGCCTTCACC+GGG | 0.543120 | 4.3:+89793785 | None:intergenic |
CATAGAAATCAAAATCATCC+AGG | 0.544656 | 4.3:+89794044 | None:intergenic |
TGACAATGGCAATGGCGAAT+GGG | 0.545833 | 4.3:-89798080 | MS.gene50093:CDS |
GAGCATTAAATATGGTGTCT+GGG | 0.546855 | 4.3:-89796326 | MS.gene50093:CDS |
AAAGACCTCTGCCTTTCTGA+AGG | 0.547378 | 4.3:+89797504 | None:intergenic |
TTGAGATTCATGAAAGCTGA+AGG | 0.548335 | 4.3:+89797578 | None:intergenic |
AGGAGTTCTTCTGACAGTAC+TGG | 0.550086 | 4.3:-89793935 | MS.gene50093:CDS |
ACGCTCTTGTCAAAATTGAC+AGG | 0.553986 | 4.3:+89795487 | None:intergenic |
TAGTAGAAAGCCTGGGCCTG+GGG | 0.555205 | 4.3:+89799821 | None:intergenic |
ACCAGATGGTTGTAATAAGG+TGG | 0.555442 | 4.3:+89797771 | None:intergenic |
GGTTCAAACCCTTATGGTAG+AGG | 0.558356 | 4.3:-89796700 | MS.gene50093:CDS |
GAGCCTCCAAAGCTAGAACC+GGG | 0.562520 | 4.3:+89796664 | None:intergenic |
TCGCCTTTGCCTTCTGTAGG+GGG | 0.562582 | 4.3:-89797834 | MS.gene50093:CDS |
CCAGATGGTTGTAATAAGGT+GGG | 0.563318 | 4.3:+89797772 | None:intergenic |
GAAGGCCATGCAAGAACGAA+AGG | 0.564589 | 4.3:-89794011 | MS.gene50093:CDS |
TCTACCATAAGGGTTTGAAC+CGG | 0.565189 | 4.3:+89796702 | None:intergenic |
CCTCTTGATCGTCCCACCAC+AGG | 0.566829 | 4.3:-89803351 | MS.gene50093:intron |
TTCAGGTGAAATTGCAACAA+GGG | 0.568232 | 4.3:-89794114 | MS.gene50093:intron |
TACCAACAGTCGAGATACTC+AGG | 0.568743 | 4.3:-89795344 | MS.gene50093:CDS |
GGTTTAAATACATTACTGGT+GGG | 0.569305 | 4.3:+89793806 | None:intergenic |
TCCTCTAGCAAAAGATCCAA+CGG | 0.572325 | 4.3:+89797623 | None:intergenic |
AACAACTATAGGTCATTCAC+GGG | 0.573388 | 4.3:-89799915 | MS.gene50093:CDS |
GGGTTTAAATACATTACTGG+TGG | 0.576335 | 4.3:+89793805 | None:intergenic |
GGTTGAAGCCATATCCAGAA+TGG | 0.576400 | 4.3:+89797892 | None:intergenic |
CCAAACCTTCAGAAAGGCAG+AGG | 0.578069 | 4.3:-89797509 | MS.gene50093:CDS |
GGCAGCAAGATAAGTGGAGT+GGG | 0.578602 | 4.3:-89795456 | MS.gene50093:CDS |
GTTGAATTACGTACCTGTGG+TGG | 0.578980 | 4.3:+89803338 | None:intergenic |
AATGTATTTAAACCCGGTGA+AGG | 0.581610 | 4.3:-89793797 | MS.gene50093:CDS |
ACTTCTGGCAGCAAGATAAG+TGG | 0.581969 | 4.3:-89795462 | MS.gene50093:CDS |
CGTTATTGTTGTCGTCCAAG+CGG | 0.588897 | 4.3:+89793870 | None:intergenic |
GGGTGTATGGAAATTGCTGA+GGG | 0.592173 | 4.3:+89797793 | None:intergenic |
ACAGAGCCAATTGGCTGTTG+AGG | 0.593080 | 4.3:+89797459 | None:intergenic |
ATTGGCTGTTGAGGAACAGA+AGG | 0.595584 | 4.3:+89797468 | None:intergenic |
CTCCTGAGTATCTCGACTGT+TGG | 0.599567 | 4.3:+89795342 | None:intergenic |
AAGATCTGGTGGACTCTGGT+CGG | 0.599715 | 4.3:-89797538 | MS.gene50093:CDS |
GCCATATGGACCATATTCCC+CGG | 0.599829 | 4.3:-89797862 | MS.gene50093:CDS |
TGCTGCATATTGCCAAGCAA+AGG | 0.601148 | 4.3:-89796272 | MS.gene50093:CDS |
GTGAGCAAAACCGAGGACCA+AGG | 0.601850 | 4.3:-89796525 | MS.gene50093:CDS |
TGCGGAGTAGCTGAAATGGT+TGG | 0.602747 | 4.3:-89795511 | MS.gene50093:CDS |
GCCCAGGCTTTCTACTATGG+AGG | 0.604151 | 4.3:-89799815 | MS.gene50093:intron |
TTTCTATGAAGATCGGCAGA+AGG | 0.604380 | 4.3:-89794029 | MS.gene50093:CDS |
GTGGGCAGTTTCCTGTGAAG+TGG | 0.604937 | 4.3:-89795438 | MS.gene50093:CDS |
CCAGAGCTTACTAACCTGCT+AGG | 0.605573 | 4.3:-89797699 | MS.gene50093:CDS |
AATGCCTACTGGATTAGTTG+GGG | 0.605874 | 4.3:-89793969 | MS.gene50093:CDS |
CCATGCAAGAACGAAAGGCA+AGG | 0.609460 | 4.3:-89794006 | MS.gene50093:CDS |
TGAGCAAAACCGAGGACCAA+GGG | 0.610520 | 4.3:-89796524 | MS.gene50093:CDS |
AATGCTAGTGCTCAGTTCTG+CGG | 0.610616 | 4.3:-89795529 | MS.gene50093:CDS |
TTGAATTACGTACCTGTGGT+GGG | 0.611243 | 4.3:+89803339 | None:intergenic |
ATTCCTCCAAACCTTCAGAA+AGG | 0.611580 | 4.3:-89797515 | MS.gene50093:CDS |
ACCTCCATAGTAGAAAGCCT+GGG | 0.612346 | 4.3:+89799814 | None:intergenic |
TGCCTACTGGATTAGTTGGG+GGG | 0.613757 | 4.3:-89793967 | MS.gene50093:CDS |
AGAGGCTATCTCTCTAACCC+CGG | 0.614586 | 4.3:-89796682 | MS.gene50093:CDS |
CTTGGCATCCTTGAAATCAG+TGG | 0.615695 | 4.3:+89796390 | None:intergenic |
GGGGTGTATGGAAATTGCTG+AGG | 0.615889 | 4.3:+89797792 | None:intergenic |
TTTCTCTTGAAAATAGCAGA+CGG | 0.616582 | 4.3:-89796603 | MS.gene50093:CDS |
TTACTGGTGGGAACATCAGA+GGG | 0.616730 | 4.3:+89793818 | None:intergenic |
CCTGTGGTGGGACGATCAAG+AGG | 0.618602 | 4.3:+89803351 | None:intergenic |
AAATAGCAGACGGCACGGCA+GGG | 0.619949 | 4.3:-89796593 | MS.gene50093:CDS |
ATTACTGGTGGGAACATCAG+AGG | 0.620253 | 4.3:+89793817 | None:intergenic |
AGCTTTCATGAATCTCAACA+AGG | 0.620909 | 4.3:-89797573 | MS.gene50093:CDS |
TGGGGTGCATACACATTGGG+AGG | 0.622796 | 4.3:+89799839 | None:intergenic |
AATCAGTGGCAAAATCTGGC+CGG | 0.622969 | 4.3:+89796404 | None:intergenic |
TAACATGAAGGATCAGATTG+TGG | 0.625767 | 4.3:-89803051 | MS.gene50093:intron |
CTAGCAAAAGATCCAACGGA+AGG | 0.626823 | 4.3:+89797627 | None:intergenic |
ACCAGTAATGTATTTAAACC+CGG | 0.627473 | 4.3:-89793803 | MS.gene50093:CDS |
AACTCAACCAGATAACATGA+AGG | 0.628484 | 4.3:-89803063 | MS.gene50093:CDS |
TCTGGCTGAGAAACTGGAGT+CGG | 0.633808 | 4.3:+89797717 | None:intergenic |
TGGCAGCAAGATAAGTGGAG+TGG | 0.635971 | 4.3:-89795457 | MS.gene50093:CDS |
TCCTTCATATGTCAATAATG+GGG | 0.636508 | 4.3:-89798050 | MS.gene50093:CDS |
TTTGATGGATCAAGATCTGG+TGG | 0.636647 | 4.3:-89797549 | MS.gene50093:CDS |
CCTTCATATGTCAATAATGG+GGG | 0.641399 | 4.3:-89798049 | MS.gene50093:CDS |
CTTGAAAATAGCAGACGGCA+CGG | 0.643405 | 4.3:-89796598 | MS.gene50093:CDS |
CATGAAAGCTGAAGGAACCA+GGG | 0.645158 | 4.3:+89797586 | None:intergenic |
TACACATTGGGAGGGTACAG+AGG | 0.648042 | 4.3:+89799848 | None:intergenic |
TTTCAGGTGAAATTGCAACA+AGG | 0.653357 | 4.3:-89794115 | MS.gene50093:intron |
CCCTACAGAAGGCAAAGGCG+AGG | 0.658818 | 4.3:+89797836 | None:intergenic |
ATGCCTACTGGATTAGTTGG+GGG | 0.665482 | 4.3:-89793968 | MS.gene50093:CDS |
AGCCTCCAAAGCTAGAACCG+GGG | 0.665960 | 4.3:+89796665 | None:intergenic |
TCAAGAGGAGGCTGTGATGG+TGG | 0.676241 | 4.3:+89803366 | None:intergenic |
CAGATGGTTGTAATAAGGTG+GGG | 0.681497 | 4.3:+89797773 | None:intergenic |
ATGAAAGCTGAAGGAACCAG+GGG | 0.687499 | 4.3:+89797587 | None:intergenic |
ATATCCAGAATGGAAAACAA+GGG | 0.689183 | 4.3:+89797902 | None:intergenic |
AGTTTGGAGGAGGAACCAGA+TGG | 0.690239 | 4.3:+89797757 | None:intergenic |
AGGCAAAGGCGAGGTAACCG+GGG | 0.693351 | 4.3:+89797845 | None:intergenic |
GTGGTGGGACGATCAAGAGG+AGG | 0.694057 | 4.3:+89803354 | None:intergenic |
GGGGTGCATACACATTGGGA+GGG | 0.699507 | 4.3:+89799840 | None:intergenic |
GGTGTATGGAAATTGCTGAG+GGG | 0.708381 | 4.3:+89797794 | None:intergenic |
ATCCTCAGTGAGCAAAACCG+AGG | 0.723529 | 4.3:-89796532 | MS.gene50093:CDS |
CAACAGTCGAGATACTCAGG+AGG | 0.750598 | 4.3:-89795341 | MS.gene50093:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 89793760 | 89803403 | 89793760 | ID=MS.gene50093 |
chr4.3 | mRNA | 89793760 | 89803403 | 89793760 | ID=MS.gene50093.t1;Parent=MS.gene50093 |
chr4.3 | exon | 89803352 | 89803403 | 89803352 | ID=MS.gene50093.t1.exon1;Parent=MS.gene50093.t1 |
chr4.3 | CDS | 89803352 | 89803403 | 89803352 | ID=cds.MS.gene50093.t1;Parent=MS.gene50093.t1 |
chr4.3 | exon | 89803052 | 89803095 | 89803052 | ID=MS.gene50093.t1.exon2;Parent=MS.gene50093.t1 |
chr4.3 | CDS | 89803052 | 89803095 | 89803052 | ID=cds.MS.gene50093.t1;Parent=MS.gene50093.t1 |
chr4.3 | exon | 89799816 | 89799942 | 89799816 | ID=MS.gene50093.t1.exon3;Parent=MS.gene50093.t1 |
chr4.3 | CDS | 89799816 | 89799942 | 89799816 | ID=cds.MS.gene50093.t1;Parent=MS.gene50093.t1 |
chr4.3 | exon | 89798030 | 89798106 | 89798030 | ID=MS.gene50093.t1.exon4;Parent=MS.gene50093.t1 |
chr4.3 | CDS | 89798030 | 89798106 | 89798030 | ID=cds.MS.gene50093.t1;Parent=MS.gene50093.t1 |
chr4.3 | exon | 89797431 | 89797946 | 89797431 | ID=MS.gene50093.t1.exon5;Parent=MS.gene50093.t1 |
chr4.3 | CDS | 89797431 | 89797946 | 89797431 | ID=cds.MS.gene50093.t1;Parent=MS.gene50093.t1 |
chr4.3 | exon | 89796234 | 89796761 | 89796234 | ID=MS.gene50093.t1.exon6;Parent=MS.gene50093.t1 |
chr4.3 | CDS | 89796234 | 89796761 | 89796234 | ID=cds.MS.gene50093.t1;Parent=MS.gene50093.t1 |
chr4.3 | exon | 89795342 | 89795554 | 89795342 | ID=MS.gene50093.t1.exon7;Parent=MS.gene50093.t1 |
chr4.3 | CDS | 89795342 | 89795554 | 89795342 | ID=cds.MS.gene50093.t1;Parent=MS.gene50093.t1 |
chr4.3 | exon | 89793760 | 89794131 | 89793760 | ID=MS.gene50093.t1.exon8;Parent=MS.gene50093.t1 |
chr4.3 | CDS | 89793760 | 89794131 | 89793760 | ID=cds.MS.gene50093.t1;Parent=MS.gene50093.t1 |
Gene Sequence |
Protein sequence |