Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50130.t1 | XP_003616475.1 | 100 | 361 | 0 | 0 | 1 | 361 | 1 | 361 | 3.20E-194 | 687.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50130.t1 | O22287 | 91.1 | 361 | 32 | 0 | 1 | 361 | 1 | 361 | 1.4e-179 | 630.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50130.t1 | G7KGV6 | 100.0 | 361 | 0 | 0 | 1 | 361 | 1 | 361 | 2.3e-194 | 687.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50130 | MS.gene022258 | PPI |
| MS.gene50130 | MS.gene074391 | PPI |
| MS.gene20783 | MS.gene50130 | PPI |
| MS.gene50130 | MS.gene25915 | PPI |
| MS.gene50130 | MS.gene07262 | PPI |
| MS.gene50130 | MS.gene20834 | PPI |
| MS.gene70588 | MS.gene50130 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50130.t1 | MTR_5g080770 | 100.000 | 361 | 0 | 0 | 1 | 361 | 1 | 361 | 0.0 | 734 |
| MS.gene50130.t1 | MTR_3g069070 | 93.075 | 361 | 25 | 0 | 1 | 361 | 1 | 361 | 0.0 | 684 |
| MS.gene50130.t1 | MTR_3g069070 | 92.384 | 302 | 23 | 0 | 60 | 361 | 1 | 302 | 0.0 | 572 |
| MS.gene50130.t1 | MTR_4g133690 | 77.562 | 361 | 24 | 3 | 1 | 361 | 1 | 304 | 0.0 | 537 |
| MS.gene50130.t1 | MTR_3g078570 | 32.000 | 400 | 224 | 7 | 3 | 354 | 10 | 409 | 6.02e-63 | 206 |
| MS.gene50130.t1 | MTR_6g008840 | 32.432 | 407 | 226 | 8 | 3 | 361 | 9 | 414 | 4.62e-61 | 202 |
| MS.gene50130.t1 | MTR_3g078570 | 31.755 | 359 | 206 | 6 | 3 | 322 | 10 | 368 | 8.87e-57 | 189 |
| MS.gene50130.t1 | MTR_4g071670 | 31.034 | 232 | 108 | 6 | 168 | 361 | 3 | 220 | 6.65e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50130.t1 | AT2G39770 | 91.690 | 361 | 30 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene50130.t1 | AT2G39770 | 91.690 | 361 | 30 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene50130.t1 | AT2G39770 | 91.690 | 361 | 30 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene50130.t1 | AT3G55590 | 85.165 | 364 | 51 | 1 | 1 | 361 | 1 | 364 | 0.0 | 636 |
| MS.gene50130.t1 | AT4G30570 | 76.292 | 329 | 77 | 1 | 21 | 348 | 1 | 329 | 0.0 | 515 |
| MS.gene50130.t1 | AT1G74910 | 30.788 | 406 | 233 | 8 | 3 | 361 | 11 | 415 | 2.10e-62 | 205 |
| MS.gene50130.t1 | AT1G74910 | 30.788 | 406 | 233 | 8 | 3 | 361 | 11 | 415 | 2.10e-62 | 205 |
| MS.gene50130.t1 | AT2G04650 | 31.552 | 393 | 228 | 7 | 3 | 354 | 8 | 400 | 1.78e-61 | 202 |
| MS.gene50130.t1 | AT2G04650 | 31.169 | 385 | 226 | 6 | 9 | 354 | 4 | 388 | 4.88e-61 | 201 |
| MS.gene50130.t1 | AT1G74910 | 30.685 | 365 | 215 | 6 | 3 | 329 | 11 | 375 | 6.87e-57 | 190 |
Find 111 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGGTCCTTCCTGGTTTC+TGG | 0.049637 | 5.4:+63278443 | MS.gene50130:CDS |
| GAGACATCCCTCGCCAATTT+TGG | 0.195747 | 5.4:-63278596 | None:intergenic |
| CCTATTGAATCCCTCTGTTT+TGG | 0.205302 | 5.4:+63278345 | MS.gene50130:CDS |
| TACCTCTGGTTGGTAATTAA+TGG | 0.211786 | 5.4:-63277753 | None:intergenic |
| CACAATGAAGGCATTGATTC+TGG | 0.231325 | 5.4:+63277319 | None:intergenic |
| GCTTACCTTTGTTACCATTA+TGG | 0.253775 | 5.4:-63278116 | None:intergenic |
| TGCATTTCCAGTAGTATTAT+TGG | 0.270402 | 5.4:+63278721 | MS.gene50130:CDS |
| GTTGATGAGCCATCAAAATA+TGG | 0.294988 | 5.4:+63278229 | MS.gene50130:CDS |
| GCATTTCCAGTAGTATTATT+GGG | 0.340951 | 5.4:+63278722 | MS.gene50130:CDS |
| GTGGACGAAACAGCCAAAAT+TGG | 0.347283 | 5.4:+63278583 | MS.gene50130:CDS |
| GCATTGTTGAGTCTGGTGTT+AGG | 0.363709 | 5.4:+63278650 | MS.gene50130:CDS |
| CACTGGCTTGAGGCTTTACC+TGG | 0.369547 | 5.4:+63278495 | MS.gene50130:CDS |
| AAAATATGGGGTGGTTGTTA+TGG | 0.370396 | 5.4:+63278243 | MS.gene50130:CDS |
| GCAAAATCAACAAGAGGCTT+AGG | 0.374674 | 5.4:-63277386 | None:intergenic |
| CTATATGCAATGGTCCTTCC+TGG | 0.379450 | 5.4:+63278436 | MS.gene50130:CDS |
| GGCATTCCACTGTCGGGCAA+TGG | 0.380847 | 5.4:+63278746 | MS.gene50130:CDS |
| CTTCCCCTCCATGGGATTTG+TGG | 0.384607 | 5.4:-63278090 | None:intergenic |
| TGCAAGCATGTTTCTTGATC+CGG | 0.388859 | 5.4:-63278702 | None:intergenic |
| TGAAGGCATTGATTCTGGTT+GGG | 0.402317 | 5.4:+63277324 | MS.gene50130:CDS |
| AATTCAATCATTTCTTTAAG+TGG | 0.409592 | 5.4:-63278067 | None:intergenic |
| ATTTCAGATAGAGGCTCTTA+AGG | 0.411528 | 5.4:+63277703 | MS.gene50130:intron |
| GCATTCCACTGTCGGGCAAT+GGG | 0.416812 | 5.4:+63278747 | MS.gene50130:CDS |
| ATTTGTCTTAATCTCCTTGT+GGG | 0.419610 | 5.4:-63278851 | None:intergenic |
| TCGCAAGAAACTGAACCATT+AGG | 0.421123 | 5.4:+63277950 | MS.gene50130:CDS |
| GCCGGTGGCTCTAACATTGT+GGG | 0.431030 | 5.4:+63278550 | MS.gene50130:CDS |
| CCTGATGTCGCTATCGGTCC+TGG | 0.434526 | 5.4:+63278625 | MS.gene50130:CDS |
| CCTGGCTGCATTGTTGAGTC+TGG | 0.437150 | 5.4:+63278643 | MS.gene50130:CDS |
| CTTTACCTGATGCAGAATCA+TGG | 0.441184 | 5.4:-63277417 | None:intergenic |
| CAAACCCATGATTCTGCATC+AGG | 0.445402 | 5.4:+63277412 | MS.gene50130:CDS |
| ATGCCACCCAATAATACTAC+TGG | 0.456491 | 5.4:-63278728 | None:intergenic |
| GAAGGCATTGATTCTGGTTG+GGG | 0.475018 | 5.4:+63277325 | MS.gene50130:CDS |
| ATTGGCGAGGGATGTCTCAT+TGG | 0.477910 | 5.4:+63278601 | MS.gene50130:CDS |
| GTTGTTATGGAGGAGACAAC+AGG | 0.478358 | 5.4:+63278256 | MS.gene50130:CDS |
| GTTGGTAACAAAATCAATGC+TGG | 0.478891 | 5.4:+63278316 | MS.gene50130:CDS |
| CCAAAACAGAGGGATTCAAT+AGG | 0.480924 | 5.4:-63278345 | None:intergenic |
| GAAGAAGTCTTCTTCGAAGT+TGG | 0.483283 | 5.4:+63278528 | MS.gene50130:CDS |
| GGTTATGTTGAATTTCTTGA+AGG | 0.483467 | 5.4:+63277892 | MS.gene50130:intron |
| ATATGGGGTGGTTGTTATGG+AGG | 0.483471 | 5.4:+63278246 | MS.gene50130:CDS |
| GCACAGTAATGCGAGGAGTC+CGG | 0.487294 | 5.4:+63278683 | MS.gene50130:CDS |
| TTGATGAGCCATCAAAATAT+GGG | 0.488066 | 5.4:+63278230 | MS.gene50130:CDS |
| TTGTTACCAACAAACAACTT+TGG | 0.493157 | 5.4:-63278304 | None:intergenic |
| ATTGGGTGGCATTCCACTGT+CGG | 0.494027 | 5.4:+63278739 | MS.gene50130:CDS |
| ATGAAGGCATTGATTCTGGT+TGG | 0.494195 | 5.4:+63277323 | MS.gene50130:CDS |
| TTATGGAAGCTTCCCCTCCA+TGG | 0.496188 | 5.4:-63278099 | None:intergenic |
| TGGAGGGGAAGCTTCCATAA+TGG | 0.497290 | 5.4:+63278102 | MS.gene50130:CDS |
| TTGGGTGGCATTCCACTGTC+GGG | 0.498250 | 5.4:+63278740 | MS.gene50130:CDS |
| GTGGAGAATATGACTATCCT+TGG | 0.500881 | 5.4:+63278775 | MS.gene50130:CDS |
| TGGAGTCACTGAAGTGGTAC+TGG | 0.502053 | 5.4:+63277730 | MS.gene50130:CDS |
| GGTCCTTCCTGGTTTCTGGA+TGG | 0.503601 | 5.4:+63278447 | MS.gene50130:CDS |
| TTAGGGACACTGAGTGTCAA+TGG | 0.504104 | 5.4:-63277368 | None:intergenic |
| AGACCTCACATGACAATCTC+TGG | 0.504323 | 5.4:-63278883 | None:intergenic |
| TTTACCTGATGCAGAATCAT+GGG | 0.506591 | 5.4:-63277416 | None:intergenic |
| GGCCGGTGGCTCTAACATTG+TGG | 0.507298 | 5.4:+63278549 | MS.gene50130:CDS |
| TATGGAAGCTTCCCCTCCAT+GGG | 0.509917 | 5.4:-63278098 | None:intergenic |
| CAAAATCAACAAGAGGCTTA+GGG | 0.510775 | 5.4:-63277385 | None:intergenic |
| CCAGGACCGATAGCGACATC+AGG | 0.513487 | 5.4:-63278625 | None:intergenic |
| ATAGAGGCTCTTAAGGCGAC+TGG | 0.515685 | 5.4:+63277710 | MS.gene50130:CDS |
| TGTCGGGCAATGGGCTCGAG+TGG | 0.517470 | 5.4:+63278756 | MS.gene50130:CDS |
| CCCCACAATGTTAGAGCCAC+CGG | 0.519548 | 5.4:-63278551 | None:intergenic |
| ATTCAATCATTTCTTTAAGT+GGG | 0.523853 | 5.4:-63278066 | None:intergenic |
| ATTGGACCTGATGTCGCTAT+CGG | 0.527457 | 5.4:+63278619 | MS.gene50130:CDS |
| CAACCGAGGGACTATATCAC+TGG | 0.534394 | 5.4:+63278478 | MS.gene50130:CDS |
| TATTTGTCTTAATCTCCTTG+TGG | 0.538459 | 5.4:-63278852 | None:intergenic |
| AAGTCTTCTTCGAAGTTGGC+CGG | 0.541250 | 5.4:+63278532 | MS.gene50130:CDS |
| TGATCCTCCTTACCTCTGGT+TGG | 0.553108 | 5.4:-63277763 | None:intergenic |
| CCTGGTTTCTGGATGGACAT+CGG | 0.557795 | 5.4:+63278454 | MS.gene50130:CDS |
| ACTGAACCATTAGGAACTGC+AGG | 0.559054 | 5.4:+63277959 | MS.gene50130:CDS |
| TCGAGCCCATTGCCCGACAG+TGG | 0.567442 | 5.4:-63278752 | None:intergenic |
| ACTTCTTCCTCAGTGAGTCC+AGG | 0.572292 | 5.4:-63278513 | None:intergenic |
| GACAAGCTGATAGATGACTC+TGG | 0.573827 | 5.4:+63278001 | MS.gene50130:CDS |
| TTCAATTCGATCCAAAACAG+AGG | 0.573855 | 5.4:-63278356 | None:intergenic |
| CCGATGTCCATCCAGAAACC+AGG | 0.575033 | 5.4:-63278454 | None:intergenic |
| AGGCATTGATTCTGGTTGGG+GGG | 0.577286 | 5.4:+63277327 | MS.gene50130:CDS |
| TCAATTCGATCCAAAACAGA+GGG | 0.579956 | 5.4:-63278355 | None:intergenic |
| CATTGTGGGGAATGTTATTG+TGG | 0.580703 | 5.4:+63278564 | MS.gene50130:CDS |
| ATTGAATTCCACAAATCCCA+TGG | 0.584474 | 5.4:+63278082 | MS.gene50130:CDS |
| AATTCCACAAATCCCATGGA+GGG | 0.587789 | 5.4:+63278086 | MS.gene50130:CDS |
| TATGGAGGAGACAACAGGGC+AGG | 0.589773 | 5.4:+63278261 | MS.gene50130:CDS |
| GCTTGTCCCTAGCAAGAGCA+AGG | 0.593241 | 5.4:-63277985 | None:intergenic |
| AGCTTCCATAATGGTAACAA+AGG | 0.594491 | 5.4:+63278111 | MS.gene50130:CDS |
| TTGTCCCTAGCAAGAGCAAG+GGG | 0.600214 | 5.4:-63277983 | None:intergenic |
| AAGGCATTGATTCTGGTTGG+GGG | 0.602293 | 5.4:+63277326 | MS.gene50130:CDS |
| TTGTTAGCAAAATCAACAAG+AGG | 0.603818 | 5.4:-63277392 | None:intergenic |
| CGAAACAGCCAAAATTGGCG+AGG | 0.610805 | 5.4:+63278588 | MS.gene50130:CDS |
| CCAGACTCAACAATGCAGCC+AGG | 0.618646 | 5.4:-63278643 | None:intergenic |
| TTTGTCTTAATCTCCTTGTG+GGG | 0.619933 | 5.4:-63278850 | None:intergenic |
| CTTGTCCCTAGCAAGAGCAA+GGG | 0.621120 | 5.4:-63277984 | None:intergenic |
| TGTGATGAGATTTACAGCAA+TGG | 0.623004 | 5.4:+63278814 | MS.gene50130:CDS |
| TTTCCAGTAGTATTATTGGG+TGG | 0.628400 | 5.4:+63278725 | MS.gene50130:CDS |
| AAACATGAACATCTTCTCCA+AGG | 0.629278 | 5.4:-63278792 | None:intergenic |
| CCGGTGGCTCTAACATTGTG+GGG | 0.634245 | 5.4:+63278551 | MS.gene50130:CDS |
| TCTTCTTCGAAGTTGGCCGG+TGG | 0.634593 | 5.4:+63278535 | MS.gene50130:CDS |
| AAGCCAGTGATATAGTCCCT+CGG | 0.642817 | 5.4:-63278481 | None:intergenic |
| GGCGACTGGAGTCACTGAAG+TGG | 0.645491 | 5.4:+63277724 | MS.gene50130:CDS |
| GATGGACATCGGACAACCGA+GGG | 0.646783 | 5.4:+63278465 | MS.gene50130:CDS |
| GGGACTATATCACTGGCTTG+AGG | 0.648940 | 5.4:+63278485 | MS.gene50130:CDS |
| ATTCCACAAATCCCATGGAG+GGG | 0.651317 | 5.4:+63278087 | MS.gene50130:CDS |
| TCGCGCTGCACAGTAATGCG+AGG | 0.663076 | 5.4:+63278676 | MS.gene50130:CDS |
| GATTTACAGCAATGGTGGTG+TGG | 0.663263 | 5.4:+63278822 | MS.gene50130:CDS |
| TGATGAGCCATCAAAATATG+GGG | 0.663348 | 5.4:+63278231 | MS.gene50130:CDS |
| GGCCATTAATTACCAACCAG+AGG | 0.667310 | 5.4:+63277751 | MS.gene50130:CDS |
| GGATGGACATCGGACAACCG+AGG | 0.667624 | 5.4:+63278464 | MS.gene50130:CDS |
| TTGTTATGGAGGAGACAACA+GGG | 0.671972 | 5.4:+63278257 | MS.gene50130:CDS |
| GAAACAGCCAAAATTGGCGA+GGG | 0.673370 | 5.4:+63278589 | MS.gene50130:CDS |
| AAGCCAGAGATTGTCATGTG+AGG | 0.678411 | 5.4:+63278880 | MS.gene50130:CDS |
| GGCTTTACCTGGACTCACTG+AGG | 0.679034 | 5.4:+63278506 | MS.gene50130:CDS |
| GAATTCCACAAATCCCATGG+AGG | 0.679237 | 5.4:+63278085 | MS.gene50130:CDS |
| GATGAGATTTACAGCAATGG+TGG | 0.690673 | 5.4:+63278817 | MS.gene50130:CDS |
| TGTCCATCCAGAAACCAGGA+AGG | 0.712182 | 5.4:-63278450 | None:intergenic |
| TGTCCCTAGCAAGAGCAAGG+GGG | 0.727307 | 5.4:-63277982 | None:intergenic |
| TGAGCCATCAAAATATGGGG+TGG | 0.761819 | 5.4:+63278234 | MS.gene50130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACAGATATAAAACTTAT+AGG | - | chr5.4:63277461-63277480 | None:intergenic | 15.0% |
| !! | TAACAGATATAAAACTTATA+GGG | - | chr5.4:63277460-63277479 | None:intergenic | 15.0% |
| !!! | AAATTTCTTTATTTTGACTT+TGG | + | chr5.4:63277852-63277871 | MS.gene50130:intron | 15.0% |
| !!! | ATTTAATTTTGCCATATTAA+GGG | - | chr5.4:63277682-63277701 | None:intergenic | 15.0% |
| !!! | GAAGTCATTTAATTTTAAAA+AGG | - | chr5.4:63277585-63277604 | None:intergenic | 15.0% |
| !!! | TGTTTGCATTATTATTTTAT+TGG | - | chr5.4:63278141-63278160 | None:intergenic | 15.0% |
| !! | AATTAAATGATTTCAGATAG+AGG | + | chr5.4:63277694-63277713 | MS.gene50130:intron | 20.0% |
| !! | AATTCAATCATTTCTTTAAG+TGG | - | chr5.4:63278070-63278089 | None:intergenic | 20.0% |
| !! | ATTCAATCATTTCTTTAAGT+GGG | - | chr5.4:63278069-63278088 | None:intergenic | 20.0% |
| !!! | CATTTAATTTTGCCATATTA+AGG | - | chr5.4:63277683-63277702 | None:intergenic | 20.0% |
| !!! | TATTTCTATTTCCCTTAATA+TGG | + | chr5.4:63277668-63277687 | MS.gene50130:intron | 20.0% |
| !!! | TTATGTTCTAGAATATGTTT+GGG | + | chr5.4:63277477-63277496 | MS.gene50130:intron | 20.0% |
| ! | ATCCTTCAAAAACAAAATTG+TGG | + | chr5.4:63277826-63277845 | MS.gene50130:intron | 25.0% |
| ! | GTTCTACACAAATAAAAAAG+TGG | - | chr5.4:63277623-63277642 | None:intergenic | 25.0% |
| ! | TCACTGTTAAGAACAAAAAA+TGG | - | chr5.4:63278031-63278050 | None:intergenic | 25.0% |
| !!! | AATTTCTTTTTCGATAGAAG+TGG | - | chr5.4:63278389-63278408 | None:intergenic | 25.0% |
| !!! | ATTTCTTTTTCGATAGAAGT+GGG | - | chr5.4:63278388-63278407 | None:intergenic | 25.0% |
| !!! | GTTATGTTCTAGAATATGTT+TGG | + | chr5.4:63277476-63277495 | MS.gene50130:intron | 25.0% |
| !!! | TAAAACAGTGTTTTAAGAAG+AGG | - | chr5.4:63277802-63277821 | None:intergenic | 25.0% |
| AATCGAAAATCTGTGTTATG+TGG | - | chr5.4:63277561-63277580 | None:intergenic | 30.0% | |
| AATTCAACATAACCTGAAGT+AGG | - | chr5.4:63277886-63277905 | None:intergenic | 30.0% | |
| AGAGAAAAAGCTATATGCAA+TGG | + | chr5.4:63278426-63278445 | MS.gene50130:CDS | 30.0% | |
| ATTTGTCTTAATCTCCTTGT+GGG | - | chr5.4:63278854-63278873 | None:intergenic | 30.0% | |
| GAAAAACCAAAGTTGTTTGT+TGG | + | chr5.4:63278298-63278317 | MS.gene50130:CDS | 30.0% | |
| GCATTTCCAGTAGTATTATT+GGG | + | chr5.4:63278722-63278741 | MS.gene50130:CDS | 30.0% | |
| GGTTATGTTGAATTTCTTGA+AGG | + | chr5.4:63277892-63277911 | MS.gene50130:intron | 30.0% | |
| TATGCACATAAATACATGAC+AGG | - | chr5.4:63277645-63277664 | None:intergenic | 30.0% | |
| TATTTGTCTTAATCTCCTTG+TGG | - | chr5.4:63278855-63278874 | None:intergenic | 30.0% | |
| TGCATTTCCAGTAGTATTAT+TGG | + | chr5.4:63278721-63278740 | MS.gene50130:CDS | 30.0% | |
| TTGATGAGCCATCAAAATAT+GGG | + | chr5.4:63278230-63278249 | MS.gene50130:CDS | 30.0% | |
| TTGTTACCAACAAACAACTT+TGG | - | chr5.4:63278307-63278326 | None:intergenic | 30.0% | |
| TTGTTAGCAAAATCAACAAG+AGG | - | chr5.4:63277395-63277414 | None:intergenic | 30.0% | |
| !!! | AGCCACAATTTTGTTTTTGA+AGG | - | chr5.4:63277831-63277850 | None:intergenic | 30.0% |
| !!! | ATTTTTTCGTCTACTTGTGT+AGG | + | chr5.4:63278207-63278226 | MS.gene50130:intron | 30.0% |
| AAAATATGGGGTGGTTGTTA+TGG | + | chr5.4:63278243-63278262 | MS.gene50130:CDS | 35.0% | |
| AAACATGAACATCTTCTCCA+AGG | - | chr5.4:63278795-63278814 | None:intergenic | 35.0% | |
| AGCTTCCATAATGGTAACAA+AGG | + | chr5.4:63278111-63278130 | MS.gene50130:CDS | 35.0% | |
| ATTGAATTCCACAAATCCCA+TGG | + | chr5.4:63278082-63278101 | MS.gene50130:CDS | 35.0% | |
| ATTTCAGATAGAGGCTCTTA+AGG | + | chr5.4:63277703-63277722 | MS.gene50130:intron | 35.0% | |
| CAAAATCAACAAGAGGCTTA+GGG | - | chr5.4:63277388-63277407 | None:intergenic | 35.0% | |
| GCTTACCTTTGTTACCATTA+TGG | - | chr5.4:63278119-63278138 | None:intergenic | 35.0% | |
| TCAATTCGATCCAAAACAGA+GGG | - | chr5.4:63278358-63278377 | None:intergenic | 35.0% | |
| TGATGAGCCATCAAAATATG+GGG | + | chr5.4:63278231-63278250 | MS.gene50130:CDS | 35.0% | |
| TGTGATGAGATTTACAGCAA+TGG | + | chr5.4:63278814-63278833 | MS.gene50130:CDS | 35.0% | |
| TGTTGAATGCTTTCTAAACC+CGG | + | chr5.4:63277511-63277530 | MS.gene50130:intron | 35.0% | |
| TTAATTACCAACCAGAGGTA+AGG | + | chr5.4:63277756-63277775 | MS.gene50130:intron | 35.0% | |
| TTCAATTCGATCCAAAACAG+AGG | - | chr5.4:63278359-63278378 | None:intergenic | 35.0% | |
| TTTACCTGATGCAGAATCAT+GGG | - | chr5.4:63277419-63277438 | None:intergenic | 35.0% | |
| TTTCCAGTAGTATTATTGGG+TGG | + | chr5.4:63278725-63278744 | MS.gene50130:CDS | 35.0% | |
| TTTGTCTTAATCTCCTTGTG+GGG | - | chr5.4:63278853-63278872 | None:intergenic | 35.0% | |
| ! | GTTGATGAGCCATCAAAATA+TGG | + | chr5.4:63278229-63278248 | MS.gene50130:CDS | 35.0% |
| ! | TTTTGGATCGAATTGAACTG+AGG | + | chr5.4:63278362-63278381 | MS.gene50130:CDS | 35.0% |
| ! | TTTTTCTCTGCAGCAATCTT+TGG | - | chr5.4:63278415-63278434 | None:intergenic | 35.0% |
| !! | GTTGGTAACAAAATCAATGC+TGG | + | chr5.4:63278316-63278335 | MS.gene50130:CDS | 35.0% |
| !! | TACCTCTGGTTGGTAATTAA+TGG | - | chr5.4:63277756-63277775 | None:intergenic | 35.0% |
| !!! | AAGGATTTTGAAGCAAAGCT+TGG | + | chr5.4:63277911-63277930 | MS.gene50130:CDS | 35.0% |
| AATTCCACAAATCCCATGGA+GGG | + | chr5.4:63278086-63278105 | MS.gene50130:CDS | 40.0% | |
| ATGCCACCCAATAATACTAC+TGG | - | chr5.4:63278731-63278750 | None:intergenic | 40.0% | |
| CATTGTGGGGAATGTTATTG+TGG | + | chr5.4:63278564-63278583 | MS.gene50130:CDS | 40.0% | |
| CCAAAACAGAGGGATTCAAT+AGG | - | chr5.4:63278348-63278367 | None:intergenic | 40.0% | |
| CTTTACCTGATGCAGAATCA+TGG | - | chr5.4:63277420-63277439 | None:intergenic | 40.0% | |
| GAAGAAGTCTTCTTCGAAGT+TGG | + | chr5.4:63278528-63278547 | MS.gene50130:CDS | 40.0% | |
| GATGAGATTTACAGCAATGG+TGG | + | chr5.4:63278817-63278836 | MS.gene50130:CDS | 40.0% | |
| GCAAAATCAACAAGAGGCTT+AGG | - | chr5.4:63277389-63277408 | None:intergenic | 40.0% | |
| GTGGAGAATATGACTATCCT+TGG | + | chr5.4:63278775-63278794 | MS.gene50130:CDS | 40.0% | |
| TCGCAAGAAACTGAACCATT+AGG | + | chr5.4:63277950-63277969 | MS.gene50130:CDS | 40.0% | |
| TGCAAGCATGTTTCTTGATC+CGG | - | chr5.4:63278705-63278724 | None:intergenic | 40.0% | |
| TTGGCAATACTTCCTACTTC+AGG | + | chr5.4:63277871-63277890 | MS.gene50130:intron | 40.0% | |
| TTGTTATGGAGGAGACAACA+GGG | + | chr5.4:63278257-63278276 | MS.gene50130:CDS | 40.0% | |
| ! | AAAGCATCAGAATCAGATGC+CGG | - | chr5.4:63277533-63277552 | None:intergenic | 40.0% |
| ! | CCTATTGAATCCCTCTGTTT+TGG | + | chr5.4:63278345-63278364 | MS.gene50130:CDS | 40.0% |
| !! | ACAACCACCCCATATTTTGA+TGG | - | chr5.4:63278241-63278260 | None:intergenic | 40.0% |
| !! | ATGAAGGCATTGATTCTGGT+TGG | + | chr5.4:63277323-63277342 | MS.gene50130:CDS | 40.0% |
| !! | TGAAGGCATTGATTCTGGTT+GGG | + | chr5.4:63277324-63277343 | MS.gene50130:CDS | 40.0% |
| AAGCATCAGAATCAGATGCC+GGG | - | chr5.4:63277532-63277551 | None:intergenic | 45.0% | |
| AAGCCAGTGATATAGTCCCT+CGG | - | chr5.4:63278484-63278503 | None:intergenic | 45.0% | |
| AAGTCTTCTTCGAAGTTGGC+CGG | + | chr5.4:63278532-63278551 | MS.gene50130:CDS | 45.0% | |
| ACTGAACCATTAGGAACTGC+AGG | + | chr5.4:63277959-63277978 | MS.gene50130:CDS | 45.0% | |
| ATATGGGGTGGTTGTTATGG+AGG | + | chr5.4:63278246-63278265 | MS.gene50130:CDS | 45.0% | |
| ATTACCAACCAGAGGTAAGG+AGG | + | chr5.4:63277759-63277778 | MS.gene50130:intron | 45.0% | |
| ATTCCACAAATCCCATGGAG+GGG | + | chr5.4:63278087-63278106 | MS.gene50130:CDS | 45.0% | |
| ATTGGACCTGATGTCGCTAT+CGG | + | chr5.4:63278619-63278638 | MS.gene50130:CDS | 45.0% | |
| CAAACCCATGATTCTGCATC+AGG | + | chr5.4:63277412-63277431 | MS.gene50130:CDS | 45.0% | |
| CTATATGCAATGGTCCTTCC+TGG | + | chr5.4:63278436-63278455 | MS.gene50130:CDS | 45.0% | |
| GAAACAGCCAAAATTGGCGA+GGG | + | chr5.4:63278589-63278608 | MS.gene50130:CDS | 45.0% | |
| GAATTCCACAAATCCCATGG+AGG | + | chr5.4:63278085-63278104 | MS.gene50130:CDS | 45.0% | |
| GACAAGCTGATAGATGACTC+TGG | + | chr5.4:63278001-63278020 | MS.gene50130:CDS | 45.0% | |
| GCATTGTTGAGTCTGGTGTT+AGG | + | chr5.4:63278650-63278669 | MS.gene50130:CDS | 45.0% | |
| GGCCATTAATTACCAACCAG+AGG | + | chr5.4:63277751-63277770 | MS.gene50130:CDS | 45.0% | |
| GTGGACGAAACAGCCAAAAT+TGG | + | chr5.4:63278583-63278602 | MS.gene50130:CDS | 45.0% | |
| GTTGTTATGGAGGAGACAAC+AGG | + | chr5.4:63278256-63278275 | MS.gene50130:CDS | 45.0% | |
| TGAGCCATCAAAATATGGGG+TGG | + | chr5.4:63278234-63278253 | MS.gene50130:CDS | 45.0% | |
| TTAGGGACACTGAGTGTCAA+TGG | - | chr5.4:63277371-63277390 | None:intergenic | 45.0% | |
| ! | GATTTACAGCAATGGTGGTG+TGG | + | chr5.4:63278822-63278841 | MS.gene50130:CDS | 45.0% |
| !! | AAGGCATTGATTCTGGTTGG+GGG | + | chr5.4:63277326-63277345 | MS.gene50130:CDS | 45.0% |
| !! | GAAGGCATTGATTCTGGTTG+GGG | + | chr5.4:63277325-63277344 | MS.gene50130:CDS | 45.0% |
| ACTTCTTCCTCAGTGAGTCC+AGG | - | chr5.4:63278516-63278535 | None:intergenic | 50.0% | |
| AGTGTGATCCTCCTTACCTC+TGG | - | chr5.4:63277770-63277789 | None:intergenic | 50.0% | |
| ATAGAGGCTCTTAAGGCGAC+TGG | + | chr5.4:63277710-63277729 | MS.gene50130:CDS | 50.0% | |
| ATTGGCGAGGGATGTCTCAT+TGG | + | chr5.4:63278601-63278620 | MS.gene50130:CDS | 50.0% | |
| ATTGGGTGGCATTCCACTGT+CGG | + | chr5.4:63278739-63278758 | MS.gene50130:CDS | 50.0% | |
| CAACCGAGGGACTATATCAC+TGG | + | chr5.4:63278478-63278497 | MS.gene50130:CDS | 50.0% | |
| CAATGGTCCTTCCTGGTTTC+TGG | + | chr5.4:63278443-63278462 | MS.gene50130:CDS | 50.0% | |
| CGAAACAGCCAAAATTGGCG+AGG | + | chr5.4:63278588-63278607 | MS.gene50130:CDS | 50.0% | |
| CTTGTCCCTAGCAAGAGCAA+GGG | - | chr5.4:63277987-63278006 | None:intergenic | 50.0% | |
| TATGGAAGCTTCCCCTCCAT+GGG | - | chr5.4:63278101-63278120 | None:intergenic | 50.0% | |
| TGATCCTCCTTACCTCTGGT+TGG | - | chr5.4:63277766-63277785 | None:intergenic | 50.0% | |
| TGGAGGGGAAGCTTCCATAA+TGG | + | chr5.4:63278102-63278121 | MS.gene50130:CDS | 50.0% | |
| TGGAGTCACTGAAGTGGTAC+TGG | + | chr5.4:63277730-63277749 | MS.gene50130:CDS | 50.0% | |
| TGTCCATCCAGAAACCAGGA+AGG | - | chr5.4:63278453-63278472 | None:intergenic | 50.0% | |
| TTATGGAAGCTTCCCCTCCA+TGG | - | chr5.4:63278102-63278121 | None:intergenic | 50.0% | |
| TTGTCCCTAGCAAGAGCAAG+GGG | - | chr5.4:63277986-63278005 | None:intergenic | 50.0% | |
| ! | CCTGGTTTCTGGATGGACAT+CGG | + | chr5.4:63278454-63278473 | MS.gene50130:CDS | 50.0% |
| ! | GAGACATCCCTCGCCAATTT+TGG | - | chr5.4:63278599-63278618 | None:intergenic | 50.0% |
| ! | TTGATTCTGGTTGGGGGGTT+TGG | + | chr5.4:63277332-63277351 | MS.gene50130:CDS | 50.0% |
| !! | AGGCATTGATTCTGGTTGGG+GGG | + | chr5.4:63277327-63277346 | MS.gene50130:CDS | 50.0% |
| !! | GGGACTATATCACTGGCTTG+AGG | + | chr5.4:63278485-63278504 | MS.gene50130:CDS | 50.0% |
| CCAGACTCAACAATGCAGCC+AGG | - | chr5.4:63278646-63278665 | None:intergenic | 55.0% | |
| CCCCACAATGTTAGAGCCAC+CGG | - | chr5.4:63278554-63278573 | None:intergenic | 55.0% | |
| CCGATGTCCATCCAGAAACC+AGG | - | chr5.4:63278457-63278476 | None:intergenic | 55.0% | |
| CCTGGCTGCATTGTTGAGTC+TGG | + | chr5.4:63278643-63278662 | MS.gene50130:CDS | 55.0% | |
| CTTCCCCTCCATGGGATTTG+TGG | - | chr5.4:63278093-63278112 | None:intergenic | 55.0% | |
| GATGGACATCGGACAACCGA+GGG | + | chr5.4:63278465-63278484 | MS.gene50130:CDS | 55.0% | |
| GCACAGTAATGCGAGGAGTC+CGG | + | chr5.4:63278683-63278702 | MS.gene50130:CDS | 55.0% | |
| GCATTCCACTGTCGGGCAAT+GGG | + | chr5.4:63278747-63278766 | MS.gene50130:CDS | 55.0% | |
| GCTTGTCCCTAGCAAGAGCA+AGG | - | chr5.4:63277988-63278007 | None:intergenic | 55.0% | |
| GGCTTTACCTGGACTCACTG+AGG | + | chr5.4:63278506-63278525 | MS.gene50130:CDS | 55.0% | |
| TATGGAGGAGACAACAGGGC+AGG | + | chr5.4:63278261-63278280 | MS.gene50130:CDS | 55.0% | |
| TCTTCTTCGAAGTTGGCCGG+TGG | + | chr5.4:63278535-63278554 | MS.gene50130:CDS | 55.0% | |
| TGTCCCTAGCAAGAGCAAGG+GGG | - | chr5.4:63277985-63278004 | None:intergenic | 55.0% | |
| TTGGGTGGCATTCCACTGTC+GGG | + | chr5.4:63278740-63278759 | MS.gene50130:CDS | 55.0% | |
| ! | GGGGGTTTGGAACTAGGTTG+AGG | + | chr5.4:63277345-63277364 | MS.gene50130:CDS | 55.0% |
| ! | GGTCCTTCCTGGTTTCTGGA+TGG | + | chr5.4:63278447-63278466 | MS.gene50130:CDS | 55.0% |
| ! | TGGTTGGGGGGTTTGGAACT+AGG | + | chr5.4:63277339-63277358 | MS.gene50130:CDS | 55.0% |
| !! | CACTGGCTTGAGGCTTTACC+TGG | + | chr5.4:63278495-63278514 | MS.gene50130:CDS | 55.0% |
| !! | CCGGTGGCTCTAACATTGTG+GGG | + | chr5.4:63278551-63278570 | MS.gene50130:CDS | 55.0% |
| !! | GCCGGTGGCTCTAACATTGT+GGG | + | chr5.4:63278550-63278569 | MS.gene50130:CDS | 55.0% |
| !! | TGGTGTGGTTTTGCCCCACA+AGG | + | chr5.4:63278837-63278856 | MS.gene50130:CDS | 55.0% |
| AGGCCCCCTTGCTCTTGCTA+GGG | + | chr5.4:63277979-63277998 | MS.gene50130:CDS | 60.0% | |
| AGGGGGCCTGCAGTTCCTAA+TGG | - | chr5.4:63277968-63277987 | None:intergenic | 60.0% | |
| CCAGGACCGATAGCGACATC+AGG | - | chr5.4:63278628-63278647 | None:intergenic | 60.0% | |
| CCTGATGTCGCTATCGGTCC+TGG | + | chr5.4:63278625-63278644 | MS.gene50130:CDS | 60.0% | |
| GGATGGACATCGGACAACCG+AGG | + | chr5.4:63278464-63278483 | MS.gene50130:CDS | 60.0% | |
| GGCATTCCACTGTCGGGCAA+TGG | + | chr5.4:63278746-63278765 | MS.gene50130:CDS | 60.0% | |
| GGCGACTGGAGTCACTGAAG+TGG | + | chr5.4:63277724-63277743 | MS.gene50130:CDS | 60.0% | |
| TCGCGCTGCACAGTAATGCG+AGG | + | chr5.4:63278676-63278695 | MS.gene50130:CDS | 60.0% | |
| !! | GGCCGGTGGCTCTAACATTG+TGG | + | chr5.4:63278549-63278568 | MS.gene50130:CDS | 60.0% |
| CAGGCCCCCTTGCTCTTGCT+AGG | + | chr5.4:63277978-63277997 | MS.gene50130:CDS | 65.0% | |
| TCGAGCCCATTGCCCGACAG+TGG | - | chr5.4:63278755-63278774 | None:intergenic | 65.0% | |
| ! | TGTCGGGCAATGGGCTCGAG+TGG | + | chr5.4:63278756-63278775 | MS.gene50130:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 63277323 | 63278900 | 63277323 | ID=MS.gene50130 |
| chr5.4 | mRNA | 63277323 | 63278900 | 63277323 | ID=MS.gene50130.t1;Parent=MS.gene50130 |
| chr5.4 | exon | 63277323 | 63277433 | 63277323 | ID=MS.gene50130.t1.exon1;Parent=MS.gene50130.t1 |
| chr5.4 | CDS | 63277323 | 63277433 | 63277323 | ID=cds.MS.gene50130.t1;Parent=MS.gene50130.t1 |
| chr5.4 | exon | 63277710 | 63277772 | 63277710 | ID=MS.gene50130.t1.exon2;Parent=MS.gene50130.t1 |
| chr5.4 | CDS | 63277710 | 63277772 | 63277710 | ID=cds.MS.gene50130.t1;Parent=MS.gene50130.t1 |
| chr5.4 | exon | 63277893 | 63278132 | 63277893 | ID=MS.gene50130.t1.exon3;Parent=MS.gene50130.t1 |
| chr5.4 | CDS | 63277893 | 63278132 | 63277893 | ID=cds.MS.gene50130.t1;Parent=MS.gene50130.t1 |
| chr5.4 | exon | 63278229 | 63278900 | 63278229 | ID=MS.gene50130.t1.exon4;Parent=MS.gene50130.t1 |
| chr5.4 | CDS | 63278229 | 63278900 | 63278229 | ID=cds.MS.gene50130.t1;Parent=MS.gene50130.t1 |
| Gene Sequence |
| Protein sequence |
