Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51309.t1 | RYQ79443.1 | 60 | 135 | 37 | 1 | 1 | 118 | 328 | 462 | 4.60E-33 | 150.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51309.t1 | Q9SLX0 | 84.3 | 51 | 8 | 0 | 5 | 55 | 301 | 351 | 1.0e-17 | 90.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51309.t1 | A0A444WPU7 | 60.0 | 135 | 37 | 1 | 1 | 118 | 328 | 462 | 3.3e-33 | 150.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene51309 | 0.816745 | 4.72E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene51309 | 0.803173 | 3.96E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene51309 | 0.830072 | 3.61E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene51309 | 0.80325 | 3.81E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene51309 | 0.80524 | 1.47E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene51309 | 0.809528 | 1.81E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene51309 | 0.811484 | 6.84E-51 | -1.69E-46 |
| MS.gene056162 | MS.gene51309 | 0.802516 | 5.41E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene51309 | 0.805307 | 1.42E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene51309 | 0.801975 | 6.99E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene51309 | 0.80783 | 4.17E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51309.t1 | MTR_2g034900 | 95.614 | 114 | 5 | 0 | 5 | 118 | 296 | 409 | 8.74e-73 | 225 |
| MS.gene51309.t1 | MTR_4g131510 | 85.088 | 114 | 17 | 0 | 5 | 118 | 219 | 332 | 1.23e-65 | 204 |
| MS.gene51309.t1 | MTR_8g027585 | 81.579 | 114 | 21 | 0 | 5 | 118 | 212 | 325 | 1.52e-62 | 197 |
| MS.gene51309.t1 | MTR_1g083810 | 82.456 | 114 | 20 | 0 | 5 | 118 | 297 | 410 | 1.68e-62 | 199 |
| MS.gene51309.t1 | MTR_7g112350 | 79.825 | 114 | 23 | 0 | 5 | 118 | 297 | 410 | 9.21e-59 | 189 |
| MS.gene51309.t1 | MTR_4g133040 | 79.130 | 115 | 24 | 0 | 4 | 118 | 229 | 343 | 9.72e-59 | 188 |
| MS.gene51309.t1 | MTR_4g132980 | 76.522 | 115 | 27 | 0 | 5 | 119 | 62 | 176 | 5.65e-56 | 177 |
| MS.gene51309.t1 | MTR_4g121435 | 76.724 | 116 | 26 | 1 | 4 | 118 | 298 | 413 | 6.15e-56 | 181 |
| MS.gene51309.t1 | MTR_4g132980 | 76.522 | 115 | 27 | 0 | 5 | 119 | 190 | 304 | 9.25e-55 | 177 |
| MS.gene51309.t1 | MTR_4g127570 | 78.261 | 115 | 24 | 1 | 5 | 118 | 146 | 260 | 2.73e-49 | 162 |
| MS.gene51309.t1 | MTR_4g133030 | 75.439 | 114 | 28 | 0 | 5 | 118 | 217 | 330 | 6.32e-48 | 160 |
| MS.gene51309.t1 | MTR_4g131000 | 78.070 | 114 | 24 | 1 | 5 | 118 | 218 | 330 | 1.03e-46 | 156 |
| MS.gene51309.t1 | MTR_1g053470 | 69.298 | 114 | 33 | 2 | 7 | 118 | 93 | 206 | 4.05e-45 | 148 |
| MS.gene51309.t1 | MTR_1g053470 | 69.298 | 114 | 33 | 2 | 7 | 118 | 93 | 206 | 6.26e-45 | 148 |
| MS.gene51309.t1 | MTR_1g053470 | 69.298 | 114 | 33 | 2 | 7 | 118 | 93 | 206 | 3.67e-44 | 147 |
| MS.gene51309.t1 | MTR_4g132960 | 75.269 | 93 | 23 | 0 | 26 | 118 | 3 | 95 | 1.42e-37 | 126 |
| MS.gene51309.t1 | MTR_4g132967 | 75.269 | 93 | 23 | 0 | 26 | 118 | 7 | 99 | 1.18e-36 | 124 |
| MS.gene51309.t1 | MTR_7g112150 | 50.000 | 114 | 54 | 3 | 5 | 118 | 317 | 427 | 6.77e-27 | 103 |
| MS.gene51309.t1 | MTR_7g113400 | 50.893 | 112 | 52 | 3 | 5 | 116 | 316 | 424 | 1.17e-26 | 102 |
| MS.gene51309.t1 | MTR_4g124270 | 79.310 | 58 | 12 | 0 | 32 | 89 | 65 | 122 | 3.09e-25 | 93.6 |
| MS.gene51309.t1 | MTR_7g112160 | 47.368 | 114 | 57 | 3 | 5 | 118 | 317 | 427 | 9.04e-24 | 94.7 |
| MS.gene51309.t1 | MTR_4g013265 | 46.957 | 115 | 17 | 2 | 5 | 118 | 134 | 205 | 1.63e-22 | 90.1 |
| MS.gene51309.t1 | MTR_1g066760 | 36.190 | 105 | 60 | 2 | 7 | 105 | 310 | 413 | 2.16e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51309.t1 | AT3G06720 | 82.456 | 114 | 20 | 0 | 5 | 118 | 295 | 408 | 8.99e-61 | 194 |
| MS.gene51309.t1 | AT3G06720 | 82.456 | 114 | 20 | 0 | 5 | 118 | 295 | 408 | 8.99e-61 | 194 |
| MS.gene51309.t1 | AT4G16143 | 82.609 | 115 | 20 | 0 | 4 | 118 | 299 | 413 | 2.10e-56 | 183 |
| MS.gene51309.t1 | AT4G16143 | 82.609 | 115 | 20 | 0 | 4 | 118 | 299 | 413 | 2.10e-56 | 183 |
| MS.gene51309.t1 | AT1G09270 | 78.070 | 114 | 25 | 0 | 5 | 118 | 220 | 333 | 2.91e-56 | 181 |
| MS.gene51309.t1 | AT4G02150 | 75.893 | 112 | 27 | 0 | 5 | 116 | 298 | 409 | 3.45e-56 | 179 |
| MS.gene51309.t1 | AT1G09270 | 78.070 | 114 | 25 | 0 | 5 | 118 | 302 | 415 | 6.11e-56 | 182 |
| MS.gene51309.t1 | AT1G09270 | 78.070 | 114 | 25 | 0 | 5 | 118 | 302 | 415 | 6.11e-56 | 182 |
| MS.gene51309.t1 | AT4G02150 | 74.561 | 114 | 29 | 0 | 5 | 118 | 298 | 411 | 1.31e-55 | 181 |
| MS.gene51309.t1 | AT1G02690 | 72.807 | 114 | 31 | 0 | 5 | 118 | 300 | 413 | 7.13e-54 | 176 |
| MS.gene51309.t1 | AT1G02690 | 72.807 | 114 | 31 | 0 | 5 | 118 | 299 | 412 | 7.87e-54 | 176 |
| MS.gene51309.t1 | AT3G05720 | 59.649 | 114 | 46 | 0 | 5 | 118 | 283 | 396 | 3.35e-43 | 148 |
| MS.gene51309.t1 | AT3G05720 | 59.649 | 114 | 46 | 0 | 5 | 118 | 283 | 396 | 3.35e-43 | 148 |
| MS.gene51309.t1 | AT5G49310 | 61.739 | 115 | 44 | 0 | 4 | 118 | 292 | 406 | 1.89e-42 | 145 |
| MS.gene51309.t1 | AT5G52000 | 56.637 | 113 | 49 | 0 | 6 | 118 | 224 | 336 | 2.40e-38 | 134 |
| MS.gene51309.t1 | AT1G32880 | 60.417 | 48 | 19 | 0 | 71 | 118 | 40 | 87 | 1.37e-12 | 61.2 |
| MS.gene51309.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene51309.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene51309.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene51309.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene51309.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene51309.t1 | AT5G03070 | 30.769 | 104 | 67 | 1 | 7 | 105 | 310 | 413 | 6.34e-11 | 58.5 |
Find 25 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGAGGTTACCTGTATC+TGG | 0.286161 | 4.1:-49938184 | None:intergenic |
| TCTTGTGATTATGGGTCAAC+AGG | 0.349313 | 4.1:-49938103 | None:intergenic |
| GTATTAAGAAAGAAGCTTGC+TGG | 0.380667 | 4.1:+49938129 | MS.gene51309:CDS |
| AGCCGGACTGATTGCTCCTC+TGG | 0.418448 | 4.1:+49938642 | MS.gene51309:CDS |
| CACATACTTGATTTGCTCAT+GGG | 0.461333 | 4.1:-49938743 | None:intergenic |
| TTTCCCACCGTACGAAGTGC+AGG | 0.474639 | 4.1:-49936751 | None:intergenic |
| TCACATACTTGATTTGCTCA+TGG | 0.478259 | 4.1:-49938744 | None:intergenic |
| GCACTCTCCAATGCTACATC+TGG | 0.481318 | 4.1:+49938715 | MS.gene51309:CDS |
| ATTATATCAAACATTACAGC+TGG | 0.506298 | 4.1:+49938152 | MS.gene51309:CDS |
| ACGGTGGGAAATATTGTAAC+GGG | 0.520713 | 4.1:+49936763 | MS.gene51309:CDS |
| GGGATCAGCACTGAAGGAGA+TGG | 0.533434 | 4.1:-49936730 | None:intergenic |
| ATGTAGGCTGTTATTGAAGC+CGG | 0.538904 | 4.1:+49938625 | MS.gene51309:intron |
| GCTGATCCCTGCACTTCGTA+CGG | 0.546568 | 4.1:+49936744 | MS.gene51309:CDS |
| GGGAGATGATGCGCAGACTC+AGG | 0.546817 | 4.1:+49936783 | MS.gene51309:CDS |
| ATCCCTGCACTTCGTACGGT+GGG | 0.552774 | 4.1:+49936748 | MS.gene51309:CDS |
| GACCAGAGGAGCAATCAGTC+CGG | 0.553350 | 4.1:-49938644 | None:intergenic |
| TGGAAACAAAGACCAGATAC+AGG | 0.554927 | 4.1:+49938172 | MS.gene51309:CDS |
| GTCAACAGGCTCAAAAGACA+TGG | 0.559325 | 4.1:-49938089 | None:intergenic |
| AGTGCAGGGATCAGCACTGA+AGG | 0.573114 | 4.1:-49936736 | None:intergenic |
| GATCCCTGCACTTCGTACGG+TGG | 0.581176 | 4.1:+49936747 | MS.gene51309:CDS |
| GGTACCGCCAGATGTAGCAT+TGG | 0.592074 | 4.1:-49938722 | None:intergenic |
| TACGGTGGGAAATATTGTAA+CGG | 0.612298 | 4.1:+49936762 | MS.gene51309:CDS |
| CTCTCCAATGCTACATCTGG+CGG | 0.629473 | 4.1:+49938718 | MS.gene51309:CDS |
| TTCCCACCGTACGAAGTGCA+GGG | 0.641796 | 4.1:-49936750 | None:intergenic |
| TCAACAGGCTCAAAAGACAT+GGG | 0.682804 | 4.1:-49938088 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTACTAAATTTTAATA+TGG | - | chr4.1:49936883-49936902 | None:intergenic | 10.0% |
| !! | ACTAATTAATGCTATATATT+TGG | + | chr4.1:49937448-49937467 | MS.gene51309:intron | 15.0% |
| !! | CAAAGAAATAATTAATAGTA+GGG | - | chr4.1:49937146-49937165 | None:intergenic | 15.0% |
| !!! | AAAAAAACAAATGTTTGTTA+TGG | + | chr4.1:49937776-49937795 | MS.gene51309:intron | 15.0% |
| !!! | AAAAAACAAATGTTTGTTAT+GGG | + | chr4.1:49937777-49937796 | MS.gene51309:intron | 15.0% |
| !!! | ATTCAAATTTGATGTTTTTT+GGG | + | chr4.1:49938288-49938307 | MS.gene51309:intron | 15.0% |
| !!! | TATTCAAATTTGATGTTTTT+TGG | + | chr4.1:49938287-49938306 | MS.gene51309:intron | 15.0% |
| !! | AAAAAATAGAGATATATTGG+TGG | + | chr4.1:49937844-49937863 | MS.gene51309:intron | 20.0% |
| !! | AGTTATGTATGTAATTGAAA+TGG | - | chr4.1:49938481-49938500 | None:intergenic | 20.0% |
| !! | CCAAAGAAATAATTAATAGT+AGG | - | chr4.1:49937147-49937166 | None:intergenic | 20.0% |
| !! | TTTATGTATTTACAACAGAA+TGG | - | chr4.1:49938444-49938463 | None:intergenic | 20.0% |
| !! | TTTGCAAGTAATTAGATTTA+GGG | + | chr4.1:49937020-49937039 | MS.gene51309:intron | 20.0% |
| !!! | AATACTTTTCTTGTGATTAT+GGG | - | chr4.1:49938114-49938133 | None:intergenic | 20.0% |
| !!! | ACCAATATATCTCTATTTTT+TGG | - | chr4.1:49937845-49937864 | None:intergenic | 20.0% |
| !!! | CCTACTATTAATTATTTCTT+TGG | + | chr4.1:49937144-49937163 | MS.gene51309:intron | 20.0% |
| !!! | TAATACTTTTCTTGTGATTA+TGG | - | chr4.1:49938115-49938134 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTAATGTCAAACT+CGG | - | chr4.1:49938686-49938705 | None:intergenic | 20.0% |
| !!! | TTTTGCAAGTAATTAGATTT+AGG | + | chr4.1:49937019-49937038 | MS.gene51309:intron | 20.0% |
| ! | AAACGACACTTAAAAATGAA+CGG | + | chr4.1:49937937-49937956 | MS.gene51309:intron | 25.0% |
| ! | AAGATATGAGTAATTGACAA+AGG | - | chr4.1:49937392-49937411 | None:intergenic | 25.0% |
| ! | AATCCAACAATTACTCTAAT+TGG | - | chr4.1:49938397-49938416 | None:intergenic | 25.0% |
| ! | AATTGAGTTATCATGAACAT+GGG | - | chr4.1:49938210-49938229 | None:intergenic | 25.0% |
| ! | AGATATGAGTAATTGACAAA+GGG | - | chr4.1:49937391-49937410 | None:intergenic | 25.0% |
| ! | ATTATATCAAACATTACAGC+TGG | + | chr4.1:49938152-49938171 | MS.gene51309:CDS | 25.0% |
| ! | GCCAAAAAATAGAGATATAT+TGG | + | chr4.1:49937841-49937860 | MS.gene51309:intron | 25.0% |
| ! | GTTGTAAATACATAAAAGAC+AGG | + | chr4.1:49938448-49938467 | MS.gene51309:intron | 25.0% |
| ! | TACAACAGAATGGAAAATAA+GGG | - | chr4.1:49938434-49938453 | None:intergenic | 25.0% |
| ! | TTACAACAGAATGGAAAATA+AGG | - | chr4.1:49938435-49938454 | None:intergenic | 25.0% |
| !! | AAACACATACTTTAGCATTT+TGG | - | chr4.1:49937052-49937071 | None:intergenic | 25.0% |
| !! | CTAAATCAGTACTTTATTTC+AGG | - | chr4.1:49936927-49936946 | None:intergenic | 25.0% |
| !! | TAATTGACAAAGGGTATAAT+TGG | - | chr4.1:49937382-49937401 | None:intergenic | 25.0% |
| !! | TTCTTCTTTTTGAACATTCA+TGG | - | chr4.1:49937677-49937696 | None:intergenic | 25.0% |
| !!! | ATATTGGTGGATTAAATTGA+GGG | + | chr4.1:49937857-49937876 | MS.gene51309:intron | 25.0% |
| !!! | GTTAGCTTATTTTCTGAAAA+AGG | + | chr4.1:49938580-49938599 | MS.gene51309:intron | 25.0% |
| !!! | TATATTGGTGGATTAAATTG+AGG | + | chr4.1:49937856-49937875 | MS.gene51309:intron | 25.0% |
| AAACGACACTTAAAAAGGAA+CGG | - | chr4.1:49937300-49937319 | None:intergenic | 30.0% | |
| AAATACATAAAAGACAGGTG+TGG | + | chr4.1:49938453-49938472 | MS.gene51309:intron | 30.0% | |
| ACACCAATTAGAGTAATTGT+TGG | + | chr4.1:49938391-49938410 | MS.gene51309:intron | 30.0% | |
| ACATTAAAAAAGAAGCTGCA+TGG | + | chr4.1:49938692-49938711 | MS.gene51309:CDS | 30.0% | |
| AGAGTAATTGTTGGATTGTT+AGG | + | chr4.1:49938400-49938419 | MS.gene51309:intron | 30.0% | |
| CAAAATCAGATAACTCTCAA+AGG | - | chr4.1:49938026-49938045 | None:intergenic | 30.0% | |
| CAATTGAGTTATCATGAACA+TGG | - | chr4.1:49938211-49938230 | None:intergenic | 30.0% | |
| CATTAAAAAAGAAGCTGCAT+GGG | + | chr4.1:49938693-49938712 | MS.gene51309:CDS | 30.0% | |
| CTTGTGAATTGTTCAACAAT+TGG | + | chr4.1:49936820-49936839 | MS.gene51309:intron | 30.0% | |
| GAACCATTTATGTATGATGT+AGG | + | chr4.1:49938609-49938628 | MS.gene51309:intron | 30.0% | |
| TACCATAACGACAGTTAAAT+AGG | - | chr4.1:49937341-49937360 | None:intergenic | 30.0% | |
| TCTTTGGTCAATTAACCTAA+TGG | + | chr4.1:49937160-49937179 | MS.gene51309:intron | 30.0% | |
| TGTAGATATATTTACTTCCC+AGG | + | chr4.1:49938364-49938383 | MS.gene51309:intron | 30.0% | |
| TGTTCAAAAAGAAGAAAGAG+TGG | + | chr4.1:49937681-49937700 | MS.gene51309:intron | 30.0% | |
| TTCCTATTTAACTGTCGTTA+TGG | + | chr4.1:49937336-49937355 | MS.gene51309:intron | 30.0% | |
| ! | ACTGTCGTTATGGTATTTTA+AGG | + | chr4.1:49937346-49937365 | MS.gene51309:intron | 30.0% |
| ! | GAGAGTTATCTGATTTTGTT+GGG | + | chr4.1:49938028-49938047 | MS.gene51309:intron | 30.0% |
| ! | TACAATGATTGTTATTGCAC+CGG | - | chr4.1:49938340-49938359 | None:intergenic | 30.0% |
| ! | TGAGAGTTATCTGATTTTGT+TGG | + | chr4.1:49938027-49938046 | MS.gene51309:intron | 30.0% |
| !! | CTGTCGTTATGGTATTTTAA+GGG | + | chr4.1:49937347-49937366 | MS.gene51309:intron | 30.0% |
| !!! | AATTCACTTTGCTATTTTCG+TGG | + | chr4.1:49937904-49937923 | MS.gene51309:intron | 30.0% |
| !!! | CCTTTTTAAGTGTCGTTTTA+GGG | + | chr4.1:49937302-49937321 | MS.gene51309:intron | 30.0% |
| !!! | TAGTGTTGTGTTGGTAATTT+TGG | + | chr4.1:49936944-49936963 | MS.gene51309:intron | 30.0% |
| !!! | TCCTTTTTAAGTGTCGTTTT+AGG | + | chr4.1:49937301-49937320 | MS.gene51309:intron | 30.0% |
| !!! | TGCCATTTTGTTTTCTGTTT+GGG | + | chr4.1:49938514-49938533 | MS.gene51309:intron | 30.0% |
| !!! | TTGCCATTTTGTTTTCTGTT+TGG | + | chr4.1:49938513-49938532 | MS.gene51309:intron | 30.0% |
| ACCCCAAACAGAAAACAAAA+TGG | - | chr4.1:49938519-49938538 | None:intergenic | 35.0% | |
| ACTCTAATTGGTGTATAACC+TGG | - | chr4.1:49938385-49938404 | None:intergenic | 35.0% | |
| AGACTCAGGTAATGTCATAA+TGG | + | chr4.1:49936797-49936816 | MS.gene51309:intron | 35.0% | |
| AGACTCATTGGAACTACTAA+TGG | + | chr4.1:49937705-49937724 | MS.gene51309:intron | 35.0% | |
| CAGCCTACATCATACATAAA+TGG | - | chr4.1:49938615-49938634 | None:intergenic | 35.0% | |
| CCCTAAAACGACACTTAAAA+AGG | - | chr4.1:49937305-49937324 | None:intergenic | 35.0% | |
| CTCTAATTGGTGTATAACCT+GGG | - | chr4.1:49938384-49938403 | None:intergenic | 35.0% | |
| GACACTTAAAAATGAACGGA+GGG | + | chr4.1:49937941-49937960 | MS.gene51309:intron | 35.0% | |
| GTATTAAGAAAGAAGCTTGC+TGG | + | chr4.1:49938129-49938148 | MS.gene51309:CDS | 35.0% | |
| GTGAGCATAACTCATTCATA+GGG | - | chr4.1:49937251-49937270 | None:intergenic | 35.0% | |
| GTTATCATGAACATGGGATT+TGG | - | chr4.1:49938204-49938223 | None:intergenic | 35.0% | |
| TACGGTGGGAAATATTGTAA+CGG | + | chr4.1:49936762-49936781 | MS.gene51309:CDS | 35.0% | |
| TCATTGGAACTACTAATGGA+AGG | + | chr4.1:49937709-49937728 | MS.gene51309:intron | 35.0% | |
| ! | GTATCACATGCTGTTTAACA+TGG | + | chr4.1:49938310-49938329 | MS.gene51309:intron | 35.0% |
| ! | TCTTTTTGTCAGGCTGTTAT+TGG | + | chr4.1:49938053-49938072 | MS.gene51309:intron | 35.0% |
| !! | CACATACTTGATTTGCTCAT+GGG | - | chr4.1:49938746-49938765 | None:intergenic | 35.0% |
| !! | GTACTGATTTAGTGTTGTGT+TGG | + | chr4.1:49936935-49936954 | MS.gene51309:intron | 35.0% |
| !! | TCACATACTTGATTTGCTCA+TGG | - | chr4.1:49938747-49938766 | None:intergenic | 35.0% |
| !! | TTTTGAAGAAGATTGACCAG+AGG | - | chr4.1:49938661-49938680 | None:intergenic | 35.0% |
| !!! | GCCATTTTGTTTTCTGTTTG+GGG | + | chr4.1:49938515-49938534 | MS.gene51309:intron | 35.0% |
| ACGGTGGGAAATATTGTAAC+GGG | + | chr4.1:49936763-49936782 | MS.gene51309:CDS | 40.0% | |
| ACTACTAATGGAAGGTGAAG+AGG | + | chr4.1:49937717-49937736 | MS.gene51309:intron | 40.0% | |
| AGAAAGAGTGGAAGACTCAT+TGG | + | chr4.1:49937693-49937712 | MS.gene51309:intron | 40.0% | |
| ATAGGGACATCACAATATGC+AGG | - | chr4.1:49937234-49937253 | None:intergenic | 40.0% | |
| ATCATGAACATGGGATTTGG+AGG | - | chr4.1:49938201-49938220 | None:intergenic | 40.0% | |
| ATGAATGAGTTATGCTCACG+TGG | + | chr4.1:49937252-49937271 | MS.gene51309:intron | 40.0% | |
| ATGTAGGCTGTTATTGAAGC+CGG | + | chr4.1:49938625-49938644 | MS.gene51309:intron | 40.0% | |
| ATTTGGAGGTTACCTGTATC+TGG | - | chr4.1:49938187-49938206 | None:intergenic | 40.0% | |
| CGACACTTAAAAATGAACGG+AGG | + | chr4.1:49937940-49937959 | MS.gene51309:intron | 40.0% | |
| CGTGAGCATAACTCATTCAT+AGG | - | chr4.1:49937252-49937271 | None:intergenic | 40.0% | |
| CTACTAATGGAAGGTGAAGA+GGG | + | chr4.1:49937718-49937737 | MS.gene51309:intron | 40.0% | |
| TAGGGACATCACAATATGCA+GGG | - | chr4.1:49937233-49937252 | None:intergenic | 40.0% | |
| TCAACAGGCTCAAAAGACAT+GGG | - | chr4.1:49938091-49938110 | None:intergenic | 40.0% | |
| TCTTGTGATTATGGGTCAAC+AGG | - | chr4.1:49938106-49938125 | None:intergenic | 40.0% | |
| TGGAAACAAAGACCAGATAC+AGG | + | chr4.1:49938172-49938191 | MS.gene51309:CDS | 40.0% | |
| TGGTCAATTAACCTAATGGC+TGG | + | chr4.1:49937164-49937183 | MS.gene51309:intron | 40.0% | |
| ! | TGCTGTTTAACATGGAGATC+CGG | + | chr4.1:49938318-49938337 | MS.gene51309:intron | 40.0% |
| ! | TTGTTGGGACTCTTTTTGTC+AGG | + | chr4.1:49938043-49938062 | MS.gene51309:intron | 40.0% |
| !! | TGAATTTCTAGCCAGCCATT+AGG | - | chr4.1:49937178-49937197 | None:intergenic | 40.0% |
| ACCCCTTGAGATGAGTAAGT+GGG | + | chr4.1:49937197-49937216 | MS.gene51309:intron | 45.0% | |
| AGGGACATCACAATATGCAG+GGG | - | chr4.1:49937232-49937251 | None:intergenic | 45.0% | |
| CGACACTTAAAAAGGAACGG+AGG | - | chr4.1:49937297-49937316 | None:intergenic | 45.0% | |
| GTCAACAGGCTCAAAAGACA+TGG | - | chr4.1:49938092-49938111 | None:intergenic | 45.0% | |
| TCCCCACTTACTCATCTCAA+GGG | - | chr4.1:49937202-49937221 | None:intergenic | 45.0% | |
| TTCCCCACTTACTCATCTCA+AGG | - | chr4.1:49937203-49937222 | None:intergenic | 45.0% | |
| !! | AAATTTAATTAGAAATAATT+AGG | - | chr4.1:49936852-49936871 | None:intergenic | 5.0% |
| ACATCACAATATGCAGGGGC+CGG | - | chr4.1:49937228-49937247 | None:intergenic | 50.0% | |
| CACCCCTTGAGATGAGTAAG+TGG | + | chr4.1:49937196-49937215 | MS.gene51309:intron | 50.0% | |
| CCCCACTTACTCATCTCAAG+GGG | - | chr4.1:49937201-49937220 | None:intergenic | 50.0% | |
| CCCCTTGAGATGAGTAAGTG+GGG | + | chr4.1:49937198-49937217 | MS.gene51309:intron | 50.0% | |
| CTCTCCAATGCTACATCTGG+CGG | + | chr4.1:49938718-49938737 | MS.gene51309:CDS | 50.0% | |
| GCACTCTCCAATGCTACATC+TGG | + | chr4.1:49938715-49938734 | MS.gene51309:CDS | 50.0% | |
| ATCACAATATGCAGGGGCCG+GGG | - | chr4.1:49937226-49937245 | None:intergenic | 55.0% | |
| ATCCCTGCACTTCGTACGGT+GGG | + | chr4.1:49936748-49936767 | MS.gene51309:CDS | 55.0% | |
| CATCACAATATGCAGGGGCC+GGG | - | chr4.1:49937227-49937246 | None:intergenic | 55.0% | |
| GACCAGAGGAGCAATCAGTC+CGG | - | chr4.1:49938647-49938666 | None:intergenic | 55.0% | |
| GATGAGTAAGTGGGGAACCC+CGG | + | chr4.1:49937206-49937225 | MS.gene51309:intron | 55.0% | |
| GCTGATCCCTGCACTTCGTA+CGG | + | chr4.1:49936744-49936763 | MS.gene51309:CDS | 55.0% | |
| GGTACCGCCAGATGTAGCAT+TGG | - | chr4.1:49938725-49938744 | None:intergenic | 55.0% | |
| TTCCCACCGTACGAAGTGCA+GGG | - | chr4.1:49936753-49936772 | None:intergenic | 55.0% | |
| TTTCCCACCGTACGAAGTGC+AGG | - | chr4.1:49936754-49936773 | None:intergenic | 55.0% | |
| ! | AGTGCAGGGATCAGCACTGA+AGG | - | chr4.1:49936739-49936758 | None:intergenic | 55.0% |
| ! | GGGATCAGCACTGAAGGAGA+TGG | - | chr4.1:49936733-49936752 | None:intergenic | 55.0% |
| AGCCGGACTGATTGCTCCTC+TGG | + | chr4.1:49938642-49938661 | MS.gene51309:CDS | 60.0% | |
| GATCCCTGCACTTCGTACGG+TGG | + | chr4.1:49936747-49936766 | MS.gene51309:CDS | 60.0% | |
| GGGAGATGATGCGCAGACTC+AGG | + | chr4.1:49936783-49936802 | MS.gene51309:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 49936715 | 49938771 | 49936715 | ID=MS.gene51309 |
| chr4.1 | mRNA | 49936715 | 49938771 | 49936715 | ID=MS.gene51309.t1;Parent=MS.gene51309 |
| chr4.1 | exon | 49936715 | 49936804 | 49936715 | ID=MS.gene51309.t1.exon1;Parent=MS.gene51309.t1 |
| chr4.1 | CDS | 49936715 | 49936804 | 49936715 | ID=cds.MS.gene51309.t1;Parent=MS.gene51309.t1 |
| chr4.1 | exon | 49938065 | 49938193 | 49938065 | ID=MS.gene51309.t1.exon2;Parent=MS.gene51309.t1 |
| chr4.1 | CDS | 49938065 | 49938193 | 49938065 | ID=cds.MS.gene51309.t1;Parent=MS.gene51309.t1 |
| chr4.1 | exon | 49938631 | 49938771 | 49938631 | ID=MS.gene51309.t1.exon3;Parent=MS.gene51309.t1 |
| chr4.1 | CDS | 49938631 | 49938771 | 49938631 | ID=cds.MS.gene51309.t1;Parent=MS.gene51309.t1 |
| Gene Sequence |
| Protein sequence |
