Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51419.t1 | XP_003594798.1 | 94.7 | 94 | 5 | 0 | 186 | 279 | 106 | 199 | 1.40E-46 | 196.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51419.t1 | G7IMV4 | 94.7 | 94 | 5 | 0 | 186 | 279 | 106 | 199 | 9.9e-47 | 196.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051633 | MS.gene51419 | 0.814962 | 1.18E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene51419 | 0.849097 | 4.02E-60 | -1.69E-46 |
| MS.gene052302 | MS.gene51419 | 0.826326 | 2.88E-54 | -1.69E-46 |
| MS.gene052309 | MS.gene51419 | -0.830963 | 2.18E-55 | -1.69E-46 |
| MS.gene052376 | MS.gene51419 | 0.825956 | 3.53E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene51419 | 0.800035 | 1.74E-48 | -1.69E-46 |
| MS.gene058200 | MS.gene51419 | 0.994935 | 1.64E-211 | -1.69E-46 |
| MS.gene058201 | MS.gene51419 | 0.882771 | 7.87E-71 | -1.69E-46 |
| MS.gene061040 | MS.gene51419 | -0.828606 | 8.19E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 83 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAATATACTAATCTTTA+TGG | 0.058992 | 2.2:+54293129 | None:intergenic |
| ACATGGTAATCACCTCTTTC+AGG | 0.201446 | 2.2:+54293182 | None:intergenic |
| GTGGTGGGTTTGGTGGTGTT+GGG | 0.231999 | 2.2:-54294428 | MS.gene51419:CDS |
| GGTGGCGGCGGCGGTGGTTC+TGG | 0.258969 | 2.2:-54294357 | MS.gene51419:CDS |
| GTTGGTGGTGCTGGTGGGAT+TGG | 0.269346 | 2.2:-54294288 | MS.gene51419:CDS |
| GTTGGTGGTGCTGGTGGGAT+TGG | 0.269346 | 2.2:-54294333 | MS.gene51419:CDS |
| ATCTTCTCTTCGCTTGATTT+TGG | 0.271225 | 2.2:-54300439 | MS.gene51419:CDS |
| TGTTTCTTTGACATCTTCTA+TGG | 0.275649 | 2.2:+54293229 | None:intergenic |
| GGTGGTGGGTTTGGTGGTGT+TGG | 0.279688 | 2.2:-54294429 | MS.gene51419:CDS |
| TGGTGGGTTTGGTGGTGTTG+GGG | 0.284676 | 2.2:-54294427 | MS.gene51419:CDS |
| GTTATGTACCTCAACGTTAT+TGG | 0.287248 | 2.2:+54300222 | None:intergenic |
| AAAATATGTACCTGTAGTTT+TGG | 0.291948 | 2.2:+54297926 | None:intergenic |
| GGCGGCGGTGGAGCTGGTTT+TGG | 0.297575 | 2.2:-54294396 | MS.gene51419:CDS |
| GGCTCTGGAGTTGGTGGTGC+TGG | 0.300636 | 2.2:-54294252 | MS.gene51419:CDS |
| GGCTATGGAGTTGGTGGTGC+TGG | 0.319923 | 2.2:-54294297 | MS.gene51419:CDS |
| GGAGGTGGTGGCGGTGGCTC+TGG | 0.325712 | 2.2:-54294267 | MS.gene51419:CDS |
| GGGGTTGGTGGCGGCGGCGG+TGG | 0.328564 | 2.2:-54294363 | MS.gene51419:CDS |
| GGTGCTGGTGGGATTGGAGG+TGG | 0.340940 | 2.2:-54294282 | MS.gene51419:CDS |
| GGTGCTGGTGGGATTGGAGG+TGG | 0.340940 | 2.2:-54294327 | MS.gene51419:CDS |
| GGTAATGGCGGCGGTGGAGC+TGG | 0.351544 | 2.2:-54294402 | MS.gene51419:CDS |
| ATTCTAGCTGGATGTGGTTA+TGG | 0.361366 | 2.2:-54293206 | MS.gene51419:CDS |
| GGTTCTGGAGTTGGTGGTGC+TGG | 0.361448 | 2.2:-54294342 | MS.gene51419:CDS |
| GGTGGTGGTGGCAGCGGCAT+TGG | 0.363465 | 2.2:-54294216 | MS.gene51419:CDS |
| GGGATTGGAGGTGGTGGCGG+TGG | 0.372187 | 2.2:-54294273 | MS.gene51419:CDS |
| GGTGGTGCTGGTGGAATTAG+AGG | 0.373089 | 2.2:-54294240 | MS.gene51419:CDS |
| GGGATTGGAGGTGGTGGCGG+TGG | 0.376925 | 2.2:-54294318 | MS.gene51419:CDS |
| GGAATTAGAGGTGGTGGTGG+TGG | 0.382140 | 2.2:-54294228 | MS.gene51419:CDS |
| GGTGGGTTTGGTGGTGTTGG+GGG | 0.384529 | 2.2:-54294426 | MS.gene51419:CDS |
| GGTGGGATTGGAGGTGGTGG+CGG | 0.396776 | 2.2:-54294276 | MS.gene51419:CDS |
| GGTGGGATTGGAGGTGGTGG+CGG | 0.396776 | 2.2:-54294321 | MS.gene51419:CDS |
| ACTCAGATAGGTGGTGGGTT+TGG | 0.405641 | 2.2:-54294438 | MS.gene51419:intron |
| TTTATCATTGAAACAAAGTA+AGG | 0.406771 | 2.2:+54294167 | None:intergenic |
| GGTGGTGCTGGTGGGATTGG+AGG | 0.416636 | 2.2:-54294285 | MS.gene51419:CDS |
| GGTGGTGCTGGTGGGATTGG+AGG | 0.416636 | 2.2:-54294330 | MS.gene51419:CDS |
| GGAGGTGGTGGCGGTGGCTA+TGG | 0.417502 | 2.2:-54294312 | MS.gene51419:CDS |
| CTGGAGTTGGTGGTGCTGGT+GGG | 0.425166 | 2.2:-54294338 | MS.gene51419:CDS |
| ACATCTGTGGGCAAGAAGTA+TGG | 0.427721 | 2.2:-54298308 | MS.gene51419:CDS |
| TGTATGACTCTTCACAGCTT+TGG | 0.429158 | 2.2:+54293393 | None:intergenic |
| TCTGGAGTTGGTGGTGCTGG+TGG | 0.437509 | 2.2:-54294339 | MS.gene51419:CDS |
| GCTGGTGGGATTGGAGGTGG+TGG | 0.437896 | 2.2:-54294279 | MS.gene51419:CDS |
| GCTGGTGGGATTGGAGGTGG+TGG | 0.437896 | 2.2:-54294324 | MS.gene51419:CDS |
| ATGGAGTTGGTGGTGCTGGT+GGG | 0.449252 | 2.2:-54294293 | MS.gene51419:CDS |
| TATGGAGTTGGTGGTGCTGG+TGG | 0.452728 | 2.2:-54294294 | MS.gene51419:CDS |
| GGCGGCGGTGGTTCTGGAGT+TGG | 0.454086 | 2.2:-54294351 | MS.gene51419:CDS |
| GGTGGCGGTGGCTCTGGAGT+TGG | 0.454416 | 2.2:-54294261 | MS.gene51419:CDS |
| CAGATAGGTGGTGGGTTTGG+TGG | 0.459954 | 2.2:-54294435 | MS.gene51419:CDS |
| TCATACAGATTAACTGAGAA+TGG | 0.460860 | 2.2:-54293377 | MS.gene51419:CDS |
| GGCGGTGGCTCTGGAGTTGG+TGG | 0.463107 | 2.2:-54294258 | MS.gene51419:CDS |
| GGTGGAATTAGAGGTGGTGG+TGG | 0.473687 | 2.2:-54294231 | MS.gene51419:CDS |
| GACCCTGCGGCCAAAACTAC+AGG | 0.475768 | 2.2:-54297936 | MS.gene51419:intron |
| GCTGGTGGAATTAGAGGTGG+TGG | 0.483405 | 2.2:-54294234 | MS.gene51419:CDS |
| GTCAAAGAAACAATTCTAGC+TGG | 0.487115 | 2.2:-54293218 | MS.gene51419:CDS |
| GGTGGCGGTGGCTATGGAGT+TGG | 0.487947 | 2.2:-54294306 | MS.gene51419:CDS |
| CATGGTAATCACCTCTTTCA+GGG | 0.492101 | 2.2:+54293183 | None:intergenic |
| TAATCTCTACAGCAAGGTGC+TGG | 0.502471 | 2.2:-54297989 | MS.gene51419:intron |
| AGAGGTGGTGGTGGTGGCAG+CGG | 0.505386 | 2.2:-54294222 | MS.gene51419:CDS |
| CAAAAGCAAGATGAAAGATA+AGG | 0.509914 | 2.2:+54300389 | None:intergenic |
| TCTGGAGTTGGTGGTGCTGG+TGG | 0.516676 | 2.2:-54294249 | MS.gene51419:CDS |
| AGGCTTACTTTGGATATCAA+AGG | 0.525503 | 2.2:+54298263 | None:intergenic |
| TCAGAGACAAACTTGGTCCT+AGG | 0.526599 | 2.2:-54293299 | MS.gene51419:CDS |
| GGCGGTGGCTATGGAGTTGG+TGG | 0.527293 | 2.2:-54294303 | MS.gene51419:CDS |
| AAATTATAGTCAACATCTGT+GGG | 0.528268 | 2.2:-54298320 | MS.gene51419:intron |
| GGTGATACTCAGATAGGTGG+TGG | 0.529618 | 2.2:-54294444 | MS.gene51419:intron |
| TAAATTATAGTCAACATCTG+TGG | 0.573145 | 2.2:-54298321 | MS.gene51419:intron |
| GAAACAATTCTAGCTGGATG+TGG | 0.575381 | 2.2:-54293212 | MS.gene51419:CDS |
| TGTTGAATAGGTAAAGGAGA+TGG | 0.580212 | 2.2:-54300275 | MS.gene51419:intron |
| GGCGGTGGTTCTGGAGTTGG+TGG | 0.581007 | 2.2:-54294348 | MS.gene51419:CDS |
| AGCAGACTGGGCATTATGCA+AGG | 0.588087 | 2.2:-54298092 | MS.gene51419:intron |
| CTGTGGGCAAGAAGTATGGT+GGG | 0.597221 | 2.2:-54298304 | MS.gene51419:CDS |
| GGTGCTGGTGGAATTAGAGG+TGG | 0.598882 | 2.2:-54294237 | MS.gene51419:CDS |
| AAGTTTGTCTCTGACATACA+TGG | 0.599877 | 2.2:+54293308 | None:intergenic |
| AAATGTTATCAATGCAGCCT+AGG | 0.601717 | 2.2:+54293282 | None:intergenic |
| TGTGGTTATGGCCCTGAAAG+AGG | 0.604370 | 2.2:-54293194 | MS.gene51419:CDS |
| GTGATACTCAGATAGGTGGT+GGG | 0.612520 | 2.2:-54294443 | MS.gene51419:intron |
| TGGTCCTTCACAGAATGCAT+CGG | 0.617693 | 2.2:+54293328 | None:intergenic |
| TCTGTGGGCAAGAAGTATGG+TGG | 0.617985 | 2.2:-54298305 | MS.gene51419:CDS |
| AAAACCGATGCATTCTGTGA+AGG | 0.626151 | 2.2:-54293332 | MS.gene51419:CDS |
| TATAATATGCAGTTAAAACA+TGG | 0.629170 | 2.2:+54293165 | None:intergenic |
| ATGTATGTCAGAGACAAACT+TGG | 0.631144 | 2.2:-54293306 | MS.gene51419:CDS |
| CTCTGTTGTAGAATATGAAG+TGG | 0.633616 | 2.2:+54293255 | None:intergenic |
| TTATGCTGCCAATAACGTTG+AGG | 0.670547 | 2.2:-54300230 | MS.gene51419:intron |
| GAGGGTGATACTCAGATAGG+TGG | 0.717630 | 2.2:-54294447 | MS.gene51419:intron |
| CAGCAGCCGTAGAGACCCTG+CGG | 0.737276 | 2.2:-54297949 | MS.gene51419:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 54293139 | 54300462 | 54293139 | ID=MS.gene51419 |
| chr2.2 | mRNA | 54293139 | 54300462 | 54293139 | ID=MS.gene51419.t1;Parent=MS.gene51419 |
| chr2.2 | exon | 54300386 | 54300462 | 54300386 | ID=MS.gene51419.t1.exon1;Parent=MS.gene51419.t1 |
| chr2.2 | CDS | 54300386 | 54300462 | 54300386 | ID=cds.MS.gene51419.t1;Parent=MS.gene51419.t1 |
| chr2.2 | exon | 54300231 | 54300287 | 54300231 | ID=MS.gene51419.t1.exon2;Parent=MS.gene51419.t1 |
| chr2.2 | CDS | 54300231 | 54300287 | 54300231 | ID=cds.MS.gene51419.t1;Parent=MS.gene51419.t1 |
| chr2.2 | exon | 54298271 | 54298333 | 54298271 | ID=MS.gene51419.t1.exon3;Parent=MS.gene51419.t1 |
| chr2.2 | CDS | 54298271 | 54298333 | 54298271 | ID=cds.MS.gene51419.t1;Parent=MS.gene51419.t1 |
| chr2.2 | exon | 54298093 | 54298140 | 54298093 | ID=MS.gene51419.t1.exon4;Parent=MS.gene51419.t1 |
| chr2.2 | CDS | 54298093 | 54298140 | 54298093 | ID=cds.MS.gene51419.t1;Parent=MS.gene51419.t1 |
| chr2.2 | exon | 54297937 | 54297999 | 54297937 | ID=MS.gene51419.t1.exon5;Parent=MS.gene51419.t1 |
| chr2.2 | CDS | 54297937 | 54297999 | 54297937 | ID=cds.MS.gene51419.t1;Parent=MS.gene51419.t1 |
| chr2.2 | exon | 54294164 | 54294454 | 54294164 | ID=MS.gene51419.t1.exon6;Parent=MS.gene51419.t1 |
| chr2.2 | CDS | 54294164 | 54294454 | 54294164 | ID=cds.MS.gene51419.t1;Parent=MS.gene51419.t1 |
| chr2.2 | exon | 54293139 | 54293420 | 54293139 | ID=MS.gene51419.t1.exon7;Parent=MS.gene51419.t1 |
| chr2.2 | CDS | 54293139 | 54293420 | 54293139 | ID=cds.MS.gene51419.t1;Parent=MS.gene51419.t1 |
| Gene Sequence |
| Protein sequence |