Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058200.t1 | XP_003594798.1 | 94.7 | 94 | 5 | 0 | 186 | 279 | 106 | 199 | 1.40E-46 | 196.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058200.t1 | G7IMV4 | 94.7 | 94 | 5 | 0 | 186 | 279 | 106 | 199 | 9.9e-47 | 196.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051633 | MS.gene058200 | 0.80683 | 6.80E-50 | -1.69E-46 |
MS.gene052176 | MS.gene058200 | 0.843479 | 1.37E-58 | -1.69E-46 |
MS.gene052302 | MS.gene058200 | 0.825798 | 3.85E-54 | -1.69E-46 |
MS.gene052309 | MS.gene058200 | -0.826795 | 2.23E-54 | -1.69E-46 |
MS.gene052376 | MS.gene058200 | 0.827485 | 1.52E-54 | -1.69E-46 |
MS.gene058200 | MS.gene058201 | 0.880667 | 4.55E-70 | -1.69E-46 |
MS.gene058200 | MS.gene061040 | -0.824248 | 8.94E-54 | -1.69E-46 |
MS.gene058200 | MS.gene061658 | -0.809093 | 2.24E-50 | -1.69E-46 |
MS.gene058200 | MS.gene06594 | 0.834038 | 3.78E-56 | -1.69E-46 |
MS.gene058200 | MS.gene06806 | 0.834865 | 2.34E-56 | -1.69E-46 |
MS.gene058200 | MS.gene068549 | 0.838554 | 2.68E-57 | -1.69E-46 |
MS.gene058200 | MS.gene069122 | 0.818011 | 2.45E-52 | -1.69E-46 |
MS.gene058200 | MS.gene070899 | 0.823937 | 1.06E-53 | -1.69E-46 |
MS.gene058200 | MS.gene07115 | 0.805772 | 1.14E-49 | -1.69E-46 |
MS.gene058200 | MS.gene071529 | 0.825227 | 5.26E-54 | -1.69E-46 |
MS.gene058200 | MS.gene073833 | 0.820133 | 8.06E-53 | -1.69E-46 |
MS.gene058200 | MS.gene20584 | 0.817431 | 3.31E-52 | -1.69E-46 |
MS.gene058200 | MS.gene20912 | 0.814663 | 1.37E-51 | -1.69E-46 |
MS.gene058200 | MS.gene22691 | 0.802747 | 4.84E-49 | -1.69E-46 |
MS.gene058200 | MS.gene23912 | 0.80728 | 5.46E-50 | -1.69E-46 |
MS.gene058200 | MS.gene24539 | 0.803159 | 3.98E-49 | -1.69E-46 |
MS.gene058200 | MS.gene24692 | 0.813656 | 2.29E-51 | -1.69E-46 |
MS.gene058200 | MS.gene28922 | -0.810301 | 1.23E-50 | -1.69E-46 |
MS.gene058200 | MS.gene30855 | 0.827654 | 1.39E-54 | -1.69E-46 |
MS.gene058200 | MS.gene34085 | 0.815043 | 1.13E-51 | -1.69E-46 |
MS.gene058200 | MS.gene35910 | 0.800107 | 1.68E-48 | -1.69E-46 |
MS.gene058200 | MS.gene48435 | 0.844309 | 8.19E-59 | -1.69E-46 |
MS.gene058200 | MS.gene51419 | 0.994935 | 1.64E-211 | -1.69E-46 |
MS.gene058200 | MS.gene56484 | 0.828697 | 7.78E-55 | -1.69E-46 |
MS.gene058200 | MS.gene56546 | 0.801518 | 8.67E-49 | -1.69E-46 |
MS.gene058200 | MS.gene63893 | 0.821807 | 3.32E-53 | -1.69E-46 |
MS.gene058200 | MS.gene67884 | 0.80028 | 1.55E-48 | -1.69E-46 |
MS.gene058200 | MS.gene72128 | 0.819942 | 8.91E-53 | -1.69E-46 |
MS.gene058200 | MS.gene72130 | 0.814399 | 1.57E-51 | -1.69E-46 |
MS.gene058200 | MS.gene75434 | 0.806925 | 6.49E-50 | -1.69E-46 |
MS.gene058200 | MS.gene77682 | -0.817604 | 3.03E-52 | -1.69E-46 |
MS.gene058200 | MS.gene90862 | 0.822617 | 2.15E-53 | -1.69E-46 |
MS.gene058200 | MS.gene92548 | 0.814051 | 1.88E-51 | -1.69E-46 |
MS.gene058200 | MS.gene93202 | 0.817691 | 2.89E-52 | -1.69E-46 |
MS.gene058200 | MS.gene96220 | 0.812878 | 3.40E-51 | -1.69E-46 |
MS.gene058200 | MS.gene96800 | 0.824053 | 9.94E-54 | -1.69E-46 |
MS.gene058200 | MS.gene98277 | 0.80724 | 5.57E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 83 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAAAATATACTAATCTTTA+TGG | 0.058992 | 2.2:+54320185 | None:intergenic |
ACATGGTAATCACCTCTTTC+AGG | 0.201446 | 2.2:+54320238 | None:intergenic |
GTGGTGGGTTTGGTGGTGTT+GGG | 0.231999 | 2.2:-54321484 | MS.gene058200:CDS |
GGTGGCGGCGGCGGTGGTTC+TGG | 0.258969 | 2.2:-54321413 | MS.gene058200:CDS |
GTTGGTGGTGCTGGTGGGAT+TGG | 0.269346 | 2.2:-54321344 | MS.gene058200:CDS |
GTTGGTGGTGCTGGTGGGAT+TGG | 0.269346 | 2.2:-54321389 | MS.gene058200:CDS |
ATCTTCTCTTCGCTTGATTT+TGG | 0.271225 | 2.2:-54327495 | MS.gene058200:CDS |
TGTTTCTTTGACATCTTCTA+TGG | 0.275649 | 2.2:+54320285 | None:intergenic |
GGTGGTGGGTTTGGTGGTGT+TGG | 0.279688 | 2.2:-54321485 | MS.gene058200:CDS |
TGGTGGGTTTGGTGGTGTTG+GGG | 0.284676 | 2.2:-54321483 | MS.gene058200:CDS |
GTTATGTACCTCAACGTTAT+TGG | 0.287248 | 2.2:+54327278 | None:intergenic |
AAAATATGTACCTGTAGTTT+TGG | 0.291948 | 2.2:+54324982 | None:intergenic |
GGCGGCGGTGGAGCTGGTTT+TGG | 0.297575 | 2.2:-54321452 | MS.gene058200:CDS |
GGCTCTGGAGTTGGTGGTGC+TGG | 0.300636 | 2.2:-54321308 | MS.gene058200:CDS |
GGCTATGGAGTTGGTGGTGC+TGG | 0.319923 | 2.2:-54321353 | MS.gene058200:CDS |
GGAGGTGGTGGCGGTGGCTC+TGG | 0.325712 | 2.2:-54321323 | MS.gene058200:CDS |
GGGGTTGGTGGCGGCGGCGG+TGG | 0.328564 | 2.2:-54321419 | MS.gene058200:CDS |
GGTGCTGGTGGGATTGGAGG+TGG | 0.340940 | 2.2:-54321338 | MS.gene058200:CDS |
GGTGCTGGTGGGATTGGAGG+TGG | 0.340940 | 2.2:-54321383 | MS.gene058200:CDS |
GGTAATGGCGGCGGTGGAGC+TGG | 0.351544 | 2.2:-54321458 | MS.gene058200:CDS |
ATTCTAGCTGGATGTGGTTA+TGG | 0.361366 | 2.2:-54320262 | MS.gene058200:CDS |
GGTTCTGGAGTTGGTGGTGC+TGG | 0.361448 | 2.2:-54321398 | MS.gene058200:CDS |
GGTGGTGGTGGCAGCGGCAT+TGG | 0.363465 | 2.2:-54321272 | MS.gene058200:CDS |
GGGATTGGAGGTGGTGGCGG+TGG | 0.372187 | 2.2:-54321329 | MS.gene058200:CDS |
GGTGGTGCTGGTGGAATTAG+AGG | 0.373089 | 2.2:-54321296 | MS.gene058200:CDS |
GGGATTGGAGGTGGTGGCGG+TGG | 0.376925 | 2.2:-54321374 | MS.gene058200:CDS |
GGAATTAGAGGTGGTGGTGG+TGG | 0.382140 | 2.2:-54321284 | MS.gene058200:CDS |
GGTGGGTTTGGTGGTGTTGG+GGG | 0.384529 | 2.2:-54321482 | MS.gene058200:CDS |
GGTGGGATTGGAGGTGGTGG+CGG | 0.396776 | 2.2:-54321332 | MS.gene058200:CDS |
GGTGGGATTGGAGGTGGTGG+CGG | 0.396776 | 2.2:-54321377 | MS.gene058200:CDS |
ACTCAGATAGGTGGTGGGTT+TGG | 0.405641 | 2.2:-54321494 | MS.gene058200:intron |
TTTATCATTGAAACAAAGTA+AGG | 0.406771 | 2.2:+54321223 | None:intergenic |
GGTGGTGCTGGTGGGATTGG+AGG | 0.416636 | 2.2:-54321341 | MS.gene058200:CDS |
GGTGGTGCTGGTGGGATTGG+AGG | 0.416636 | 2.2:-54321386 | MS.gene058200:CDS |
GGAGGTGGTGGCGGTGGCTA+TGG | 0.417502 | 2.2:-54321368 | MS.gene058200:CDS |
CTGGAGTTGGTGGTGCTGGT+GGG | 0.425166 | 2.2:-54321394 | MS.gene058200:CDS |
ACATCTGTGGGCAAGAAGTA+TGG | 0.427721 | 2.2:-54325364 | MS.gene058200:CDS |
TGTATGACTCTTCACAGCTT+TGG | 0.429158 | 2.2:+54320449 | None:intergenic |
TCTGGAGTTGGTGGTGCTGG+TGG | 0.437509 | 2.2:-54321395 | MS.gene058200:CDS |
GCTGGTGGGATTGGAGGTGG+TGG | 0.437896 | 2.2:-54321335 | MS.gene058200:CDS |
GCTGGTGGGATTGGAGGTGG+TGG | 0.437896 | 2.2:-54321380 | MS.gene058200:CDS |
ATGGAGTTGGTGGTGCTGGT+GGG | 0.449252 | 2.2:-54321349 | MS.gene058200:CDS |
TATGGAGTTGGTGGTGCTGG+TGG | 0.452728 | 2.2:-54321350 | MS.gene058200:CDS |
GGCGGCGGTGGTTCTGGAGT+TGG | 0.454086 | 2.2:-54321407 | MS.gene058200:CDS |
GGTGGCGGTGGCTCTGGAGT+TGG | 0.454416 | 2.2:-54321317 | MS.gene058200:CDS |
CAGATAGGTGGTGGGTTTGG+TGG | 0.459954 | 2.2:-54321491 | MS.gene058200:CDS |
TCATACAGATTAACTGAGAA+TGG | 0.460860 | 2.2:-54320433 | MS.gene058200:CDS |
GGCGGTGGCTCTGGAGTTGG+TGG | 0.463107 | 2.2:-54321314 | MS.gene058200:CDS |
GGTGGAATTAGAGGTGGTGG+TGG | 0.473687 | 2.2:-54321287 | MS.gene058200:CDS |
GACCCTGCGGCCAAAACTAC+AGG | 0.475768 | 2.2:-54324992 | MS.gene058200:intron |
GCTGGTGGAATTAGAGGTGG+TGG | 0.483405 | 2.2:-54321290 | MS.gene058200:CDS |
GTCAAAGAAACAATTCTAGC+TGG | 0.487115 | 2.2:-54320274 | MS.gene058200:CDS |
GGTGGCGGTGGCTATGGAGT+TGG | 0.487947 | 2.2:-54321362 | MS.gene058200:CDS |
CATGGTAATCACCTCTTTCA+GGG | 0.492101 | 2.2:+54320239 | None:intergenic |
TAATCTCTACAGCAAGGTGC+TGG | 0.502471 | 2.2:-54325045 | MS.gene058200:intron |
AGAGGTGGTGGTGGTGGCAG+CGG | 0.505386 | 2.2:-54321278 | MS.gene058200:CDS |
CAAAAGCAAGATGAAAGATA+AGG | 0.509914 | 2.2:+54327445 | None:intergenic |
TCTGGAGTTGGTGGTGCTGG+TGG | 0.516676 | 2.2:-54321305 | MS.gene058200:CDS |
AGGCTTACTTTGGATATCAA+AGG | 0.525503 | 2.2:+54325319 | None:intergenic |
TCAGAGACAAACTTGGTCCT+AGG | 0.526599 | 2.2:-54320355 | MS.gene058200:CDS |
GGCGGTGGCTATGGAGTTGG+TGG | 0.527293 | 2.2:-54321359 | MS.gene058200:CDS |
AAATTATAGTCAACATCTGT+GGG | 0.528268 | 2.2:-54325376 | MS.gene058200:intron |
GGTGATACTCAGATAGGTGG+TGG | 0.529618 | 2.2:-54321500 | MS.gene058200:intron |
TAAATTATAGTCAACATCTG+TGG | 0.573145 | 2.2:-54325377 | MS.gene058200:intron |
GAAACAATTCTAGCTGGATG+TGG | 0.575381 | 2.2:-54320268 | MS.gene058200:CDS |
TGTTGAATAGGTAAAGGAGA+TGG | 0.580212 | 2.2:-54327331 | MS.gene058200:intron |
GGCGGTGGTTCTGGAGTTGG+TGG | 0.581007 | 2.2:-54321404 | MS.gene058200:CDS |
AGCAGACTGGGCATTATGCA+AGG | 0.588087 | 2.2:-54325148 | MS.gene058200:intron |
CTGTGGGCAAGAAGTATGGT+GGG | 0.597221 | 2.2:-54325360 | MS.gene058200:CDS |
GGTGCTGGTGGAATTAGAGG+TGG | 0.598882 | 2.2:-54321293 | MS.gene058200:CDS |
AAGTTTGTCTCTGACATACA+TGG | 0.599877 | 2.2:+54320364 | None:intergenic |
AAATGTTATCAATGCAGCCT+AGG | 0.601717 | 2.2:+54320338 | None:intergenic |
TGTGGTTATGGCCCTGAAAG+AGG | 0.604370 | 2.2:-54320250 | MS.gene058200:CDS |
GTGATACTCAGATAGGTGGT+GGG | 0.612520 | 2.2:-54321499 | MS.gene058200:intron |
TGGTCCTTCACAGAATGCAT+CGG | 0.617693 | 2.2:+54320384 | None:intergenic |
TCTGTGGGCAAGAAGTATGG+TGG | 0.617985 | 2.2:-54325361 | MS.gene058200:CDS |
AAAACCGATGCATTCTGTGA+AGG | 0.626151 | 2.2:-54320388 | MS.gene058200:CDS |
TATAATATGCAGTTAAAACA+TGG | 0.629170 | 2.2:+54320221 | None:intergenic |
ATGTATGTCAGAGACAAACT+TGG | 0.631144 | 2.2:-54320362 | MS.gene058200:CDS |
CTCTGTTGTAGAATATGAAG+TGG | 0.633616 | 2.2:+54320311 | None:intergenic |
TTATGCTGCCAATAACGTTG+AGG | 0.670547 | 2.2:-54327286 | MS.gene058200:intron |
GAGGGTGATACTCAGATAGG+TGG | 0.717630 | 2.2:-54321503 | MS.gene058200:intron |
CAGCAGCCGTAGAGACCCTG+CGG | 0.737276 | 2.2:-54325005 | MS.gene058200:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 54320195 | 54327518 | 54320195 | ID=MS.gene058200 |
chr2.2 | mRNA | 54320195 | 54327518 | 54320195 | ID=MS.gene058200.t1;Parent=MS.gene058200 |
chr2.2 | exon | 54327442 | 54327518 | 54327442 | ID=MS.gene058200.t1.exon1;Parent=MS.gene058200.t1 |
chr2.2 | CDS | 54327442 | 54327518 | 54327442 | ID=cds.MS.gene058200.t1;Parent=MS.gene058200.t1 |
chr2.2 | exon | 54327287 | 54327343 | 54327287 | ID=MS.gene058200.t1.exon2;Parent=MS.gene058200.t1 |
chr2.2 | CDS | 54327287 | 54327343 | 54327287 | ID=cds.MS.gene058200.t1;Parent=MS.gene058200.t1 |
chr2.2 | exon | 54325327 | 54325389 | 54325327 | ID=MS.gene058200.t1.exon3;Parent=MS.gene058200.t1 |
chr2.2 | CDS | 54325327 | 54325389 | 54325327 | ID=cds.MS.gene058200.t1;Parent=MS.gene058200.t1 |
chr2.2 | exon | 54325149 | 54325196 | 54325149 | ID=MS.gene058200.t1.exon4;Parent=MS.gene058200.t1 |
chr2.2 | CDS | 54325149 | 54325196 | 54325149 | ID=cds.MS.gene058200.t1;Parent=MS.gene058200.t1 |
chr2.2 | exon | 54324993 | 54325055 | 54324993 | ID=MS.gene058200.t1.exon5;Parent=MS.gene058200.t1 |
chr2.2 | CDS | 54324993 | 54325055 | 54324993 | ID=cds.MS.gene058200.t1;Parent=MS.gene058200.t1 |
chr2.2 | exon | 54321220 | 54321510 | 54321220 | ID=MS.gene058200.t1.exon6;Parent=MS.gene058200.t1 |
chr2.2 | CDS | 54321220 | 54321510 | 54321220 | ID=cds.MS.gene058200.t1;Parent=MS.gene058200.t1 |
chr2.2 | exon | 54320195 | 54320476 | 54320195 | ID=MS.gene058200.t1.exon7;Parent=MS.gene058200.t1 |
chr2.2 | CDS | 54320195 | 54320476 | 54320195 | ID=cds.MS.gene058200.t1;Parent=MS.gene058200.t1 |
Gene Sequence |
Protein sequence |