Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51559.t1 | AES58965.2 | 97.4 | 647 | 17 | 0 | 1 | 647 | 1 | 647 | 0.00E+00 | 1260.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51559.t1 | Q9SUU1 | 65.6 | 666 | 200 | 4 | 3 | 647 | 7 | 664 | 2.3e-255 | 882.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51559.t1 | G7I6E0 | 97.4 | 647 | 17 | 0 | 1 | 647 | 1 | 647 | 0.0e+00 | 1260.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86346 | MS.gene51559 | PPI |
| MS.gene51559 | MS.gene89068 | PPI |
| MS.gene51559 | MS.gene034033 | PPI |
| MS.gene026799 | MS.gene51559 | PPI |
| MS.gene79489 | MS.gene51559 | PPI |
| MS.gene37317 | MS.gene51559 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51559.t1 | MTR_1g011840 | 97.372 | 647 | 17 | 0 | 1 | 647 | 1 | 647 | 0.0 | 1307 |
| MS.gene51559.t1 | MTR_3g107730 | 74.704 | 676 | 155 | 3 | 2 | 662 | 3 | 677 | 0.0 | 1029 |
| MS.gene51559.t1 | MTR_0459s0020 | 66.410 | 649 | 204 | 5 | 3 | 642 | 15 | 658 | 0.0 | 878 |
| MS.gene51559.t1 | MTR_3g107730 | 78.474 | 511 | 110 | 0 | 2 | 512 | 3 | 513 | 0.0 | 848 |
| MS.gene51559.t1 | MTR_0366s0020 | 59.253 | 643 | 176 | 4 | 3 | 642 | 15 | 574 | 0.0 | 749 |
| MS.gene51559.t1 | MTR_7g110000 | 55.909 | 660 | 270 | 4 | 3 | 648 | 7 | 659 | 0.0 | 730 |
| MS.gene51559.t1 | MTR_2g032690 | 54.180 | 646 | 277 | 4 | 3 | 636 | 7 | 645 | 0.0 | 713 |
| MS.gene51559.t1 | MTR_3g077670 | 55.864 | 648 | 266 | 5 | 3 | 636 | 7 | 648 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51559.t1 | AT1G15460 | 65.680 | 676 | 203 | 7 | 4 | 669 | 13 | 669 | 0.0 | 912 |
| MS.gene51559.t1 | AT1G15460 | 65.680 | 676 | 203 | 7 | 4 | 669 | 13 | 669 | 0.0 | 912 |
| MS.gene51559.t1 | AT5G25430 | 66.873 | 646 | 208 | 2 | 2 | 641 | 8 | 653 | 0.0 | 906 |
| MS.gene51559.t1 | AT4G32510 | 64.296 | 689 | 202 | 5 | 3 | 670 | 7 | 672 | 0.0 | 906 |
| MS.gene51559.t1 | AT4G32510 | 65.517 | 667 | 201 | 4 | 3 | 648 | 7 | 665 | 0.0 | 905 |
| MS.gene51559.t1 | AT1G74810 | 63.811 | 677 | 216 | 6 | 3 | 669 | 12 | 669 | 0.0 | 888 |
| MS.gene51559.t1 | AT1G74810 | 63.811 | 677 | 216 | 6 | 3 | 669 | 12 | 669 | 0.0 | 888 |
| MS.gene51559.t1 | AT1G74810 | 63.811 | 677 | 216 | 6 | 3 | 669 | 12 | 669 | 0.0 | 888 |
| MS.gene51559.t1 | AT1G15460 | 68.926 | 605 | 178 | 3 | 4 | 598 | 13 | 617 | 0.0 | 872 |
| MS.gene51559.t1 | AT1G74810 | 64.407 | 649 | 202 | 6 | 31 | 669 | 8 | 637 | 0.0 | 859 |
| MS.gene51559.t1 | AT1G74810 | 64.407 | 649 | 202 | 6 | 31 | 669 | 8 | 637 | 0.0 | 859 |
| MS.gene51559.t1 | AT1G15460 | 64.777 | 582 | 176 | 7 | 98 | 669 | 1 | 563 | 0.0 | 773 |
| MS.gene51559.t1 | AT1G74810 | 62.715 | 582 | 188 | 6 | 98 | 669 | 1 | 563 | 0.0 | 751 |
| MS.gene51559.t1 | AT2G47160 | 57.453 | 644 | 257 | 4 | 3 | 636 | 7 | 643 | 0.0 | 741 |
| MS.gene51559.t1 | AT3G62270 | 56.522 | 644 | 264 | 4 | 3 | 636 | 7 | 644 | 0.0 | 740 |
| MS.gene51559.t1 | AT2G47160 | 55.456 | 669 | 256 | 5 | 3 | 636 | 7 | 668 | 0.0 | 731 |
| MS.gene51559.t1 | AT3G06450 | 52.477 | 646 | 284 | 6 | 3 | 636 | 9 | 643 | 0.0 | 699 |
| MS.gene51559.t1 | AT3G06450 | 52.477 | 646 | 284 | 6 | 3 | 636 | 9 | 643 | 0.0 | 699 |
| MS.gene51559.t1 | AT3G06450 | 52.477 | 646 | 284 | 6 | 3 | 636 | 9 | 643 | 0.0 | 699 |
| MS.gene51559.t1 | AT3G06450 | 52.477 | 646 | 284 | 6 | 3 | 636 | 9 | 643 | 0.0 | 699 |
| MS.gene51559.t1 | AT1G74810 | 62.385 | 545 | 176 | 6 | 135 | 669 | 1 | 526 | 0.0 | 698 |
Find 148 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCCCAGGGAATCAATTT+TGG | 0.152632 | 1.4:-8740213 | MS.gene51559:CDS |
| GCACTTCCTGTTATTGCTTT+TGG | 0.157279 | 1.4:-8742879 | MS.gene51559:CDS |
| TTATTATGATGCAGAGTTAT+TGG | 0.204927 | 1.4:-8739476 | MS.gene51559:CDS |
| GGAATTATCCACTCAATATT+TGG | 0.211492 | 1.4:-8742540 | MS.gene51559:CDS |
| TACTTACTTGTAGTGCCTTC+TGG | 0.214656 | 1.4:+8740162 | None:intergenic |
| GGATACCTACCTCCGTTCTT+TGG | 0.245672 | 1.4:-8740264 | MS.gene51559:CDS |
| TCGAGCTTCTACTATCATTT+TGG | 0.246718 | 1.4:+8739407 | None:intergenic |
| TCTTCGGTTATTCCTCTAAA+TGG | 0.254655 | 1.4:+8743002 | None:intergenic |
| CTTTGCTCATTAACTCTAAC+AGG | 0.255009 | 1.4:+8740352 | None:intergenic |
| ACTCTTATTTGCGGCATTCT+TGG | 0.263685 | 1.4:-8741067 | MS.gene51559:CDS |
| TACCCTTGCCATACATCTTT+GGG | 0.286144 | 1.4:-8741312 | MS.gene51559:CDS |
| CGATTATCACTAGGTTTACT+AGG | 0.288360 | 1.4:-8742134 | MS.gene51559:CDS |
| TCTGAATATGAGGAAATTAT+TGG | 0.289374 | 1.4:-8739752 | MS.gene51559:CDS |
| GTACCCTTGCCATACATCTT+TGG | 0.289747 | 1.4:-8741313 | MS.gene51559:CDS |
| GATACCTACCTCCGTTCTTT+GGG | 0.297206 | 1.4:-8740263 | MS.gene51559:CDS |
| AACAGCTTGGCACCTAATTC+TGG | 0.301971 | 1.4:+8742435 | None:intergenic |
| CTTGGTCTCCCTCCAGTAAA+TGG | 0.302633 | 1.4:-8741049 | MS.gene51559:CDS |
| CTGTACTGGTGTTAGAATAT+TGG | 0.303071 | 1.4:-8742931 | MS.gene51559:CDS |
| GTCCAGTGGTAGAGAGATTC+AGG | 0.305551 | 1.4:+8741435 | None:intergenic |
| TGGATGAGATGACAACTAAT+AGG | 0.313017 | 1.4:-8739456 | MS.gene51559:CDS |
| TAGGCATCTATATGTTTAAT+AGG | 0.315242 | 1.4:+8740379 | None:intergenic |
| AGGGTTGCAGAGGAATTATT+TGG | 0.316548 | 1.4:-8742114 | MS.gene51559:CDS |
| CGAGGTGTCATCGCAGATTA+TGG | 0.318939 | 1.4:-8741561 | MS.gene51559:CDS |
| CAATGAAGACAGACATATTC+AGG | 0.324753 | 1.4:-8739359 | MS.gene51559:intron |
| CATATCCCGGTAGATTCTTC+AGG | 0.332119 | 1.4:+8739146 | None:intergenic |
| TTTGTTCCAGGGTTTGTGTT+TGG | 0.335131 | 1.4:-8742200 | MS.gene51559:intron |
| GGATGAGATGACAACTAATA+GGG | 0.335188 | 1.4:-8739455 | MS.gene51559:CDS |
| ACTTACTTGTAGTGCCTTCT+GGG | 0.339945 | 1.4:+8740163 | None:intergenic |
| TTAGCTATGGGACCATTTAG+AGG | 0.350397 | 1.4:-8743014 | None:intergenic |
| TGCTCTCCAAAAGCAATAAC+AGG | 0.357844 | 1.4:+8742873 | None:intergenic |
| CAAAGAATATGTAGAAAGTT+GGG | 0.360953 | 1.4:+8742907 | None:intergenic |
| TTCCTTCTGTTGAGCCATCT+TGG | 0.365186 | 1.4:+8741231 | None:intergenic |
| TTCCATCTGGTGTTCCTAGA+AGG | 0.366122 | 1.4:-8741482 | MS.gene51559:CDS |
| ATTAACTCTAACAGGCAAAT+AGG | 0.368905 | 1.4:+8740360 | None:intergenic |
| TAAGTAGAAGTGCAAGAAAA+TGG | 0.370034 | 1.4:-8741820 | MS.gene51559:CDS |
| GGTTGCTTTGTCCACTTCCT+TGG | 0.370070 | 1.4:-8741461 | MS.gene51559:CDS |
| AATCGTAGTAGCTTAACTTA+TGG | 0.376260 | 1.4:-8739385 | MS.gene51559:CDS |
| CACTCTTCACCACCTTCCTT+CGG | 0.378699 | 1.4:+8740647 | None:intergenic |
| GTTGCTTTGTCCACTTCCTT+GGG | 0.379269 | 1.4:-8741460 | MS.gene51559:CDS |
| GGAAGCAACTCTGAATTATA+CGG | 0.384602 | 1.4:-8740601 | MS.gene51559:CDS |
| GCGAGCCGTGTTTATAGAAA+TGG | 0.386586 | 1.4:-8740572 | MS.gene51559:CDS |
| GAGCAACTTAATAGAGAAAC+AGG | 0.387278 | 1.4:-8742855 | MS.gene51559:intron |
| AGAAAATGGCGATATTTAAC+AGG | 0.388372 | 1.4:-8741806 | MS.gene51559:intron |
| TGAGGAAGGACTCCATTTAC+TGG | 0.394428 | 1.4:+8741037 | None:intergenic |
| ACCATTAGTGGTATATTATG+TGG | 0.395408 | 1.4:+8739725 | None:intergenic |
| TAAAGAGTTGGAGACTTTGA+AGG | 0.396140 | 1.4:-8740452 | MS.gene51559:CDS |
| AGAGTTTAGCGACTCTTAGA+AGG | 0.397727 | 1.4:-8740997 | MS.gene51559:CDS |
| AAGTCTTCCTTTGAAATCTT+CGG | 0.398151 | 1.4:+8742986 | None:intergenic |
| TAGAGGAATATAAATTTCAT+TGG | 0.405736 | 1.4:-8741904 | MS.gene51559:CDS |
| CTACCACTGGACTGTAGTTA+AGG | 0.410424 | 1.4:-8741424 | MS.gene51559:intron |
| TTTCATTGGCGCTATACAAA+TGG | 0.416111 | 1.4:-8741890 | MS.gene51559:CDS |
| CTTTCCCAAAATTGATTCCC+TGG | 0.417341 | 1.4:+8740208 | None:intergenic |
| GCAAAGAATATGTAGAAAGT+TGG | 0.420315 | 1.4:+8742906 | None:intergenic |
| AGTGGACAAAGCAACCTTCT+AGG | 0.424170 | 1.4:+8741468 | None:intergenic |
| TTTCATGCAACAGGCTATAG+AGG | 0.424803 | 1.4:-8742073 | MS.gene51559:intron |
| GGATTGACACGGATACCTAT+TGG | 0.428993 | 1.4:-8739875 | MS.gene51559:CDS |
| GGCTGAAAATCCCTTGTTAG+AGG | 0.430093 | 1.4:-8741921 | MS.gene51559:CDS |
| GGAAACAATATTCCACCAAT+AGG | 0.432037 | 1.4:+8739860 | None:intergenic |
| ATTCTTTAGACTCTTATTTG+CGG | 0.433984 | 1.4:-8741076 | MS.gene51559:intron |
| TCCACATAATATACCACTAA+TGG | 0.440446 | 1.4:-8739726 | MS.gene51559:intron |
| ATTAGATGCTTCTGAATATG+AGG | 0.443445 | 1.4:-8739762 | MS.gene51559:CDS |
| AATGTAGCTATTGTCTTGTA+TGG | 0.455228 | 1.4:+8739935 | None:intergenic |
| ATGGCAATTGATAGTCTCCC+AGG | 0.464102 | 1.4:-8740226 | MS.gene51559:CDS |
| TAGCCGTTCCTGTCATCAAA+AGG | 0.464519 | 1.4:-8740285 | MS.gene51559:CDS |
| GTCCAACATACTACCATCAT+TGG | 0.465983 | 1.4:+8741534 | None:intergenic |
| ATGAGAAGGAAGAAAGGTAA+TGG | 0.468317 | 1.4:+8739839 | None:intergenic |
| CTAAACTCTTAGTATGCATA+GGG | 0.468592 | 1.4:+8741011 | None:intergenic |
| GGTCAACCTTTGTTGATTGT+AGG | 0.469219 | 1.4:-8742516 | MS.gene51559:CDS |
| TCGGTATCTTGAACTCACTT+AGG | 0.471906 | 1.4:+8741945 | None:intergenic |
| ATTCCAGCAGTTATGATAGC+AGG | 0.473402 | 1.4:-8741283 | MS.gene51559:CDS |
| TTGGTCTTAGGTTAAAGAGT+TGG | 0.495813 | 1.4:-8740464 | MS.gene51559:intron |
| TGGATTTGTGCAATCTGTAC+TGG | 0.499427 | 1.4:-8742945 | MS.gene51559:CDS |
| GAAGAATCTACCGGGATATG+AGG | 0.501335 | 1.4:-8739143 | None:intergenic |
| AAACCTGCTATCATAACTGC+TGG | 0.501635 | 1.4:+8741280 | None:intergenic |
| AGATGGAACTTTGCTCGGTA+TGG | 0.502937 | 1.4:+8741497 | None:intergenic |
| TTTCCCAAAATTGATTCCCT+GGG | 0.509771 | 1.4:+8740209 | None:intergenic |
| TAAGAGAGAGATTGCTTCCA+AGG | 0.511158 | 1.4:-8739811 | MS.gene51559:CDS |
| ATAAATGCCCCAAAGATGTA+TGG | 0.511521 | 1.4:+8741304 | None:intergenic |
| TGACTGCAACTGCAGGATAT+GGG | 0.516594 | 1.4:-8741340 | MS.gene51559:intron |
| AGATTATGGTGTTCCAATGA+TGG | 0.517455 | 1.4:-8741547 | MS.gene51559:CDS |
| AGAGTGCGAAGGAATGCATT+AGG | 0.517771 | 1.4:-8740630 | MS.gene51559:CDS |
| TTTAGCGACTCTTAGAAGGC+AGG | 0.520700 | 1.4:-8740993 | MS.gene51559:intron |
| AAATTTATATTCCTCTAACA+AGG | 0.528470 | 1.4:+8741910 | None:intergenic |
| GATTCAGGTTCCCAAGGAAG+TGG | 0.531361 | 1.4:+8741450 | None:intergenic |
| CTAAAAGTGATAAGGCGATA+AGG | 0.531741 | 1.4:+8740305 | None:intergenic |
| ATATCCCGGTAGATTCTTCA+GGG | 0.532773 | 1.4:+8739147 | None:intergenic |
| CTTACTTGTAGTGCCTTCTG+GGG | 0.534232 | 1.4:+8740164 | None:intergenic |
| AACCTGAATCTCTCTACCAC+TGG | 0.534784 | 1.4:-8741437 | MS.gene51559:CDS |
| ATACCGAGCAAAGTTCCATC+TGG | 0.536307 | 1.4:-8741495 | MS.gene51559:CDS |
| GTTTACCCTGAAGAATCTAC+CGG | 0.545419 | 1.4:-8739152 | MS.gene51559:CDS |
| GAAATTTACAGTTGATCCGA+AGG | 0.547190 | 1.4:-8740663 | MS.gene51559:intron |
| CAATCTGTTATGGATTGACA+CGG | 0.550652 | 1.4:-8739886 | MS.gene51559:CDS |
| AATTTATATTCCTCTAACAA+GGG | 0.556470 | 1.4:+8741911 | None:intergenic |
| TTTACAGTTGATCCGAAGGA+AGG | 0.560146 | 1.4:-8740659 | MS.gene51559:intron |
| GATTATCACTAGGTTTACTA+GGG | 0.562886 | 1.4:-8742133 | MS.gene51559:CDS |
| AGGAACGGCTAAAAGTGATA+AGG | 0.563689 | 1.4:+8740297 | None:intergenic |
| TTGACATCCACAGCTATATG+TGG | 0.566865 | 1.4:-8742561 | MS.gene51559:CDS |
| ATGCATGTTCGATTATCACT+AGG | 0.567007 | 1.4:-8742143 | MS.gene51559:CDS |
| GCTAAACTCTTAGTATGCAT+AGG | 0.567941 | 1.4:+8741010 | None:intergenic |
| TTCCAATGATGGTAGTATGT+TGG | 0.573433 | 1.4:-8741536 | MS.gene51559:CDS |
| ATAGCTATGAGAAGGAAGAA+AGG | 0.575155 | 1.4:+8739833 | None:intergenic |
| TAGTTTGCATCGAATAACCT+TGG | 0.577666 | 1.4:+8739794 | None:intergenic |
| TTCCAAGATGGCTCAACAGA+AGG | 0.577993 | 1.4:-8741233 | MS.gene51559:CDS |
| ACACCAGATGGAACTTTGCT+CGG | 0.580094 | 1.4:+8741492 | None:intergenic |
| TATGCATAGGGGACTGAGGA+AGG | 0.581537 | 1.4:+8741023 | None:intergenic |
| TGCCCCAAAGATGTATGGCA+AGG | 0.582072 | 1.4:+8741309 | None:intergenic |
| ACATCATAGTGGTAAGCAGA+TGG | 0.586567 | 1.4:+8741193 | None:intergenic |
| GAGACTACCTCCTCATATCC+CGG | 0.588192 | 1.4:+8739133 | None:intergenic |
| TAGAGAGATTCAGGTTCCCA+AGG | 0.590686 | 1.4:+8741444 | None:intergenic |
| ACCCTTGCCATACATCTTTG+GGG | 0.593909 | 1.4:-8741311 | MS.gene51559:CDS |
| TGGTACTGACTCTACAAATG+AGG | 0.595169 | 1.4:+8739955 | None:intergenic |
| GGCATCCATTTCTATAAACA+CGG | 0.597444 | 1.4:+8740567 | None:intergenic |
| AGCAAAATATCCCCAAAGAA+CGG | 0.599664 | 1.4:+8740252 | None:intergenic |
| ATACCTACCTCCGTTCTTTG+GGG | 0.600323 | 1.4:-8740262 | MS.gene51559:CDS |
| GGAATAACCGAAGATTTCAA+AGG | 0.600913 | 1.4:-8742993 | MS.gene51559:CDS |
| AAAGAATATGTAGAAAGTTG+GGG | 0.602432 | 1.4:+8742908 | None:intergenic |
| ATTATCCACTCAATATTTGG+TGG | 0.603688 | 1.4:-8742537 | MS.gene51559:CDS |
| GCCCCAAAGATGTATGGCAA+GGG | 0.606508 | 1.4:+8741310 | None:intergenic |
| TAGGTTTACTAGGGTTGCAG+AGG | 0.607582 | 1.4:-8742124 | MS.gene51559:CDS |
| GAAGGTGGTGAAGAGTGCGA+AGG | 0.614475 | 1.4:-8740641 | MS.gene51559:CDS |
| ACAGTTGATCCGAAGGAAGG+TGG | 0.614712 | 1.4:-8740656 | MS.gene51559:intron |
| ATGGTGTACATGATAACAGT+TGG | 0.615199 | 1.4:+8742483 | None:intergenic |
| TTGACACGGATACCTATTGG+TGG | 0.616417 | 1.4:-8739872 | MS.gene51559:CDS |
| TCTTGCACTTCTACTTACCA+TGG | 0.616641 | 1.4:+8741826 | None:intergenic |
| TATCCCCAAAGAACGGAGGT+AGG | 0.621214 | 1.4:+8740259 | None:intergenic |
| TCTCTCTTATAGCTATGAGA+AGG | 0.622750 | 1.4:+8739825 | None:intergenic |
| GTTGACCACCAAATATTGAG+TGG | 0.625187 | 1.4:+8742532 | None:intergenic |
| GAAGGACTCCATTTACTGGA+GGG | 0.628004 | 1.4:+8741041 | None:intergenic |
| TTACTTGTAGTGCCTTCTGG+GGG | 0.629233 | 1.4:+8740165 | None:intergenic |
| ATTCAATCAGGGTGCATACG+AGG | 0.629254 | 1.4:-8741579 | MS.gene51559:intron |
| TGGCAATTGATAGTCTCCCA+GGG | 0.629445 | 1.4:-8740225 | MS.gene51559:CDS |
| TCATAGCGTAGCTTCCAAGA+TGG | 0.632289 | 1.4:-8741245 | MS.gene51559:CDS |
| AGAGTTGGAGACTTTGAAGG+AGG | 0.633076 | 1.4:-8740449 | MS.gene51559:CDS |
| GATAATTCCACATATAGCTG+TGG | 0.636977 | 1.4:+8742554 | None:intergenic |
| GATGAGATGACAACTAATAG+GGG | 0.637701 | 1.4:-8739454 | MS.gene51559:CDS |
| AAGGAATGCATTAGGCAACA+AGG | 0.639810 | 1.4:-8740622 | MS.gene51559:CDS |
| AACCTTCTAGGAACACCAGA+TGG | 0.640956 | 1.4:+8741480 | None:intergenic |
| GCAACTGCAGGATATGGGAA+AGG | 0.654624 | 1.4:-8741335 | MS.gene51559:intron |
| TTAGTATGCATAGGGGACTG+AGG | 0.656982 | 1.4:+8741019 | None:intergenic |
| AAGTGAGTTCAAGATACCGA+AGG | 0.667136 | 1.4:-8741942 | MS.gene51559:CDS |
| AACAATACTTACGGTAGGCG+CGG | 0.669012 | 1.4:+8740546 | None:intergenic |
| GCAACTCCTACAATCAACAA+AGG | 0.672535 | 1.4:+8742510 | None:intergenic |
| GGAAGGACTCCATTTACTGG+AGG | 0.678944 | 1.4:+8741040 | None:intergenic |
| TTTACCCTGAAGAATCTACC+GGG | 0.685166 | 1.4:-8739151 | MS.gene51559:CDS |
| AGCCTGTTGCATGAAAAGAA+CGG | 0.686568 | 1.4:+8742080 | None:intergenic |
| AAAATATCCCCAAAGAACGG+AGG | 0.705867 | 1.4:+8740255 | None:intergenic |
| GTACCTTAACTACAGTCCAG+TGG | 0.707187 | 1.4:+8741421 | None:intergenic |
| TAAACTCTTAGTATGCATAG+GGG | 0.760737 | 1.4:+8741012 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAGAATTAGTTATAAT+TGG | + | chr1.4:8742869-8742888 | None:intergenic | 10.0% |
| !!! | TTCTAGTTTATATAAAAAAA+TGG | + | chr1.4:8741281-8741300 | None:intergenic | 10.0% |
| !! | ATGAAAACTAATGAAAAAAA+TGG | - | chr1.4:8741732-8741751 | MS.gene51559:intron | 15.0% |
| !! | GATTATTAATTCTACAAATA+TGG | + | chr1.4:8742097-8742116 | None:intergenic | 15.0% |
| !!! | AACTCTTTATTTTATGTTTA+TGG | - | chr1.4:8742963-8742982 | MS.gene51559:CDS | 15.0% |
| !!! | ATTTTGAAACTATATTTGAA+AGG | + | chr1.4:8739337-8739356 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTATTTGGTCTT+AGG | - | chr1.4:8741677-8741696 | MS.gene51559:intron | 15.0% |
| !!! | TAGAATTTTATCAGATTTAT+AGG | + | chr1.4:8742497-8742516 | None:intergenic | 15.0% |
| !!! | TATTTATGTTATTTGATCTA+TGG | - | chr1.4:8739362-8739381 | MS.gene51559:CDS | 15.0% |
| !!! | TTATATATATACATGCTTTT+AGG | + | chr1.4:8742578-8742597 | None:intergenic | 15.0% |
| !!! | TTGAATTTTATAAACAAGAT+TGG | - | chr1.4:8739188-8739207 | MS.gene51559:intron | 15.0% |
| !! | AAATTTATATTCCTCTAACA+AGG | + | chr1.4:8740246-8740265 | None:intergenic | 20.0% |
| !! | AACATACTGAAATTGATAAA+TGG | + | chr1.4:8742467-8742486 | None:intergenic | 20.0% |
| !! | AATTGTGAAGTTAAAATACT+CGG | + | chr1.4:8740169-8740188 | None:intergenic | 20.0% |
| !! | AATTTATATTCCTCTAACAA+GGG | + | chr1.4:8740245-8740264 | None:intergenic | 20.0% |
| !! | ACATACTGAAATTGATAAAT+GGG | + | chr1.4:8742466-8742485 | None:intergenic | 20.0% |
| !! | AGTAGTAAATATTTAGACTT+CGG | + | chr1.4:8740382-8740401 | None:intergenic | 20.0% |
| !! | ATTAAACTCTTTGATCTATA+AGG | - | chr1.4:8739518-8739537 | MS.gene51559:CDS | 20.0% |
| !! | ATTAATTCTACAAATATGGA+AGG | + | chr1.4:8742093-8742112 | None:intergenic | 20.0% |
| !! | CAAATAAAAAAACTCTTTCA+AGG | - | chr1.4:8742824-8742843 | MS.gene51559:intron | 20.0% |
| !! | TAATAAAAAATGTTCACCAT+TGG | + | chr1.4:8741668-8741687 | None:intergenic | 20.0% |
| !! | TAGAGGAATATAAATTTCAT+TGG | - | chr1.4:8740249-8740268 | MS.gene51559:CDS | 20.0% |
| !! | TTAAACTCTTTGATCTATAA+GGG | - | chr1.4:8739519-8739538 | MS.gene51559:CDS | 20.0% |
| !!! | ATGCTAATGTTTAACTTTTA+TGG | - | chr1.4:8739925-8739944 | MS.gene51559:CDS | 20.0% |
| !!! | ATTAAGCTTTTTATCCAAAT+AGG | + | chr1.4:8741206-8741225 | None:intergenic | 20.0% |
| !!! | GAATTGATACTTTAGAATTA+AGG | + | chr1.4:8741446-8741465 | None:intergenic | 20.0% |
| !!! | GGTGAACATTTTTTATTATT+TGG | - | chr1.4:8741670-8741689 | MS.gene51559:intron | 20.0% |
| !!! | TATCATATAAGTTATTTCTG+TGG | - | chr1.4:8739831-8739850 | MS.gene51559:CDS | 20.0% |
| !!! | TGATAAAATTTTACCATTAG+TGG | + | chr1.4:8742443-8742462 | None:intergenic | 20.0% |
| !!! | TTAAGCTTTTTATCCAAATA+GGG | + | chr1.4:8741205-8741224 | None:intergenic | 20.0% |
| !!! | TTTATTTTATGTTTATGGCT+TGG | - | chr1.4:8742968-8742987 | MS.gene51559:CDS | 20.0% |
| ! | AAACATTAGCATTACACTTT+GGG | + | chr1.4:8739917-8739936 | None:intergenic | 25.0% |
| ! | AAACTATATTTGAAAGGTTG+TGG | + | chr1.4:8739331-8739350 | None:intergenic | 25.0% |
| ! | AAAGAATATGTAGAAAGTTG+GGG | + | chr1.4:8739248-8739267 | None:intergenic | 25.0% |
| ! | AAATTTGTGGACAAATAATG+CGG | + | chr1.4:8740472-8740491 | None:intergenic | 25.0% |
| ! | ATCAAAAGGATATACATGTT+AGG | + | chr1.4:8741059-8741078 | None:intergenic | 25.0% |
| ! | CAAAGAATATGTAGAAAGTT+GGG | + | chr1.4:8739249-8739268 | None:intergenic | 25.0% |
| ! | TAAACATTAGCATTACACTT+TGG | + | chr1.4:8739918-8739937 | None:intergenic | 25.0% |
| ! | TAAGAGTCTAAAGAATCAAA+AGG | + | chr1.4:8741073-8741092 | None:intergenic | 25.0% |
| ! | TAGAAAAACATTGACATTGT+AGG | + | chr1.4:8740445-8740464 | None:intergenic | 25.0% |
| ! | TAGGCATCTATATGTTTAAT+AGG | + | chr1.4:8741777-8741796 | None:intergenic | 25.0% |
| ! | TCTGAATATGAGGAAATTAT+TGG | - | chr1.4:8742401-8742420 | MS.gene51559:intron | 25.0% |
| ! | TGGACTTATGTTATAGAAAT+AGG | + | chr1.4:8741261-8741280 | None:intergenic | 25.0% |
| ! | TTAATAGAGAAACAGGTAAA+TGG | - | chr1.4:8739305-8739324 | MS.gene51559:intron | 25.0% |
| ! | TTATTATGATGCAGAGTTAT+TGG | - | chr1.4:8742677-8742696 | MS.gene51559:intron | 25.0% |
| ! | TTTCTTGAAAATGTTTGATC+AGG | - | chr1.4:8742608-8742627 | MS.gene51559:intron | 25.0% |
| !! | AATTTACTTTCCATTTTGCT+AGG | + | chr1.4:8740138-8740157 | None:intergenic | 25.0% |
| !! | ACATGAAAACATTGATTGTA+TGG | + | chr1.4:8740524-8740543 | None:intergenic | 25.0% |
| !! | ACATTGATTGAAGAAATTTG+TGG | + | chr1.4:8740485-8740504 | None:intergenic | 25.0% |
| !! | ATTCTTTAGACTCTTATTTG+CGG | - | chr1.4:8741077-8741096 | MS.gene51559:intron | 25.0% |
| !! | CTATATTTTGCAATCTGTTA+TGG | - | chr1.4:8742257-8742276 | MS.gene51559:intron | 25.0% |
| !! | TGTTTTTCTTCTTGGAATAA+TGG | - | chr1.4:8740980-8740999 | MS.gene51559:intron | 25.0% |
| !! | TTGCAATCATTTTCTCTTTT+GGG | - | chr1.4:8740291-8740310 | MS.gene51559:CDS | 25.0% |
| !!! | AATGACTTTAGATGGATTTT+AGG | + | chr1.4:8740794-8740813 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTCGTTAAACCTA+AGG | + | chr1.4:8742532-8742551 | None:intergenic | 25.0% |
| !!! | CACAATTGTTTTGATCAATA+GGG | - | chr1.4:8740182-8740201 | MS.gene51559:CDS | 25.0% |
| !!! | TCACAATTGTTTTGATCAAT+AGG | - | chr1.4:8740181-8740200 | MS.gene51559:CDS | 25.0% |
| !!! | TCTACTTATTTTTAGTCCTT+AGG | - | chr1.4:8742513-8742532 | MS.gene51559:CDS | 25.0% |
| AAGCTATACTAAAGAGCTTA+TGG | - | chr1.4:8741312-8741331 | MS.gene51559:CDS | 30.0% | |
| AATCGTAGTAGCTTAACTTA+TGG | - | chr1.4:8742768-8742787 | MS.gene51559:intron | 30.0% | |
| AATGTAGCTATTGTCTTGTA+TGG | + | chr1.4:8742221-8742240 | None:intergenic | 30.0% | |
| ACCATTAGTGGTATATTATG+TGG | + | chr1.4:8742431-8742450 | None:intergenic | 30.0% | |
| AGAAAATGGCGATATTTAAC+AGG | - | chr1.4:8740347-8740366 | MS.gene51559:CDS | 30.0% | |
| AGACAATTTGAGAGAACTTA+AGG | + | chr1.4:8741386-8741405 | None:intergenic | 30.0% | |
| ATTAACTCTAACAGGCAAAT+AGG | + | chr1.4:8741796-8741815 | None:intergenic | 30.0% | |
| ATTAGATGCTTCTGAATATG+AGG | - | chr1.4:8742391-8742410 | MS.gene51559:intron | 30.0% | |
| ATTATCCACTCAATATTTGG+TGG | - | chr1.4:8739616-8739635 | MS.gene51559:intron | 30.0% | |
| CAAGAAGAAAAACATCATAG+TGG | + | chr1.4:8740974-8740993 | None:intergenic | 30.0% | |
| CTAAACTCTTAGTATGCATA+GGG | + | chr1.4:8741145-8741164 | None:intergenic | 30.0% | |
| GATAGATAACTTGATGTTTG+TGG | - | chr1.4:8742044-8742063 | MS.gene51559:intron | 30.0% | |
| GATTATCACTAGGTTTACTA+GGG | - | chr1.4:8740020-8740039 | MS.gene51559:intron | 30.0% | |
| GCAAAGAATATGTAGAAAGT+TGG | + | chr1.4:8739250-8739269 | None:intergenic | 30.0% | |
| GGAATTATCCACTCAATATT+TGG | - | chr1.4:8739613-8739632 | MS.gene51559:intron | 30.0% | |
| TAAACTCTTAGTATGCATAG+GGG | + | chr1.4:8741144-8741163 | None:intergenic | 30.0% | |
| TCCACATAATATACCACTAA+TGG | - | chr1.4:8742427-8742446 | MS.gene51559:CDS | 30.0% | |
| TCGCAAATACTTCATATGAT+TGG | - | chr1.4:8739442-8739461 | MS.gene51559:CDS | 30.0% | |
| TGTGCAAAAACTGTATAGAA+TGG | + | chr1.4:8739692-8739711 | None:intergenic | 30.0% | |
| TTAACCTTCTAACTATACTG+AGG | - | chr1.4:8739776-8739795 | MS.gene51559:CDS | 30.0% | |
| TTATGGTCATATTTGTTCCA+GGG | - | chr1.4:8739942-8739961 | MS.gene51559:CDS | 30.0% | |
| TTTATGGTCATATTTGTTCC+AGG | - | chr1.4:8739941-8739960 | MS.gene51559:CDS | 30.0% | |
| ! | CACTATGATGTTTTTCTTCT+TGG | - | chr1.4:8740972-8740991 | MS.gene51559:intron | 30.0% |
| ! | CTTGCAATCATTTTCTCTTT+TGG | - | chr1.4:8740290-8740309 | MS.gene51559:CDS | 30.0% |
| ! | TAAGTAGAAGTGCAAGAAAA+TGG | - | chr1.4:8740333-8740352 | MS.gene51559:CDS | 30.0% |
| ! | TTGGGGATATTTTGCTTATA+TGG | - | chr1.4:8741908-8741927 | MS.gene51559:CDS | 30.0% |
| !! | AAGTCTTCCTTTGAAATCTT+CGG | + | chr1.4:8739170-8739189 | None:intergenic | 30.0% |
| !! | ATTTAGCACTGACATTGTTA+TGG | - | chr1.4:8739486-8739505 | MS.gene51559:CDS | 30.0% |
| !! | CATTTTCAAGAAACAAGTGA+AGG | + | chr1.4:8742601-8742620 | None:intergenic | 30.0% |
| AACTATACTGAGGTTCTGTT+TGG | - | chr1.4:8739786-8739805 | MS.gene51559:CDS | 35.0% | |
| AGAACCTCAGTATAGTTAGA+AGG | + | chr1.4:8739783-8739802 | None:intergenic | 35.0% | |
| AGATTATGGTGTTCCAATGA+TGG | - | chr1.4:8740606-8740625 | MS.gene51559:CDS | 35.0% | |
| AGCAAAATATCCCCAAAGAA+CGG | + | chr1.4:8741904-8741923 | None:intergenic | 35.0% | |
| ATAAATGCCCCAAAGATGTA+TGG | + | chr1.4:8740852-8740871 | None:intergenic | 35.0% | |
| ATAGCTATGAGAAGGAAGAA+AGG | + | chr1.4:8742323-8742342 | None:intergenic | 35.0% | |
| ATGAGAAGGAAGAAAGGTAA+TGG | + | chr1.4:8742317-8742336 | None:intergenic | 35.0% | |
| ATGCATGTTCGATTATCACT+AGG | - | chr1.4:8740010-8740029 | MS.gene51559:intron | 35.0% | |
| ATGGTGTACATGATAACAGT+TGG | + | chr1.4:8739673-8739692 | None:intergenic | 35.0% | |
| CAATGAAGACAGACATATTC+AGG | - | chr1.4:8742794-8742813 | MS.gene51559:intron | 35.0% | |
| CGATTATCACTAGGTTTACT+AGG | - | chr1.4:8740019-8740038 | MS.gene51559:intron | 35.0% | |
| CTAAAAGTGATAAGGCGATA+AGG | + | chr1.4:8741851-8741870 | None:intergenic | 35.0% | |
| CTTTGCTCATTAACTCTAAC+AGG | + | chr1.4:8741804-8741823 | None:intergenic | 35.0% | |
| GAAATTTACAGTTGATCCGA+AGG | - | chr1.4:8741490-8741509 | MS.gene51559:CDS | 35.0% | |
| GAGCAACTTAATAGAGAAAC+AGG | - | chr1.4:8739298-8739317 | MS.gene51559:intron | 35.0% | |
| GATAATTCCACATATAGCTG+TGG | + | chr1.4:8739602-8739621 | None:intergenic | 35.0% | |
| GATGAGATGACAACTAATAG+GGG | - | chr1.4:8742699-8742718 | MS.gene51559:intron | 35.0% | |
| GCTAAACTCTTAGTATGCAT+AGG | + | chr1.4:8741146-8741165 | None:intergenic | 35.0% | |
| GGAAACAATATTCCACCAAT+AGG | + | chr1.4:8742296-8742315 | None:intergenic | 35.0% | |
| GGAAGCAACTCTGAATTATA+CGG | - | chr1.4:8741552-8741571 | MS.gene51559:CDS | 35.0% | |
| GGAATAACCGAAGATTTCAA+AGG | - | chr1.4:8739160-8739179 | MS.gene51559:intron | 35.0% | |
| GGATGAGATGACAACTAATA+GGG | - | chr1.4:8742698-8742717 | MS.gene51559:intron | 35.0% | |
| GGCATCCATTTCTATAAACA+CGG | + | chr1.4:8741589-8741608 | None:intergenic | 35.0% | |
| GTGTACTTGAGTTTATCTAC+CGG | + | chr1.4:8741424-8741443 | None:intergenic | 35.0% | |
| TAAAGAGTTGGAGACTTTGA+AGG | - | chr1.4:8741701-8741720 | MS.gene51559:intron | 35.0% | |
| TCTCTCTTATAGCTATGAGA+AGG | + | chr1.4:8742331-8742350 | None:intergenic | 35.0% | |
| TCTTCGGTTATTCCTCTAAA+TGG | + | chr1.4:8739154-8739173 | None:intergenic | 35.0% | |
| TGCACAAAAAGACCAGAATT+AGG | - | chr1.4:8739706-8739725 | MS.gene51559:intron | 35.0% | |
| TGGATGAGATGACAACTAAT+AGG | - | chr1.4:8742697-8742716 | MS.gene51559:intron | 35.0% | |
| TGTACTTGAGTTTATCTACC+GGG | + | chr1.4:8741423-8741442 | None:intergenic | 35.0% | |
| TGTCAAGCCAACAATACTTA+CGG | + | chr1.4:8741619-8741638 | None:intergenic | 35.0% | |
| TTCCAATGATGGTAGTATGT+TGG | - | chr1.4:8740617-8740636 | MS.gene51559:CDS | 35.0% | |
| TTGAGAGAACTTAAGGAAAG+TGG | + | chr1.4:8741379-8741398 | None:intergenic | 35.0% | |
| TTGCAGTCAATGACTTTAGA+TGG | + | chr1.4:8740802-8740821 | None:intergenic | 35.0% | |
| TTTCATTGGCGCTATACAAA+TGG | - | chr1.4:8740263-8740282 | MS.gene51559:CDS | 35.0% | |
| ! | AGGCTATAGAGGTATAGATA+TGG | - | chr1.4:8740091-8740110 | MS.gene51559:intron | 35.0% |
| ! | CAATCTGTTATGGATTGACA+CGG | - | chr1.4:8742267-8742286 | MS.gene51559:intron | 35.0% |
| ! | CTGTACTGGTGTTAGAATAT+TGG | - | chr1.4:8739222-8739241 | MS.gene51559:intron | 35.0% |
| ! | TAGTTTGCATCGAATAACCT+TGG | + | chr1.4:8742362-8742381 | None:intergenic | 35.0% |
| ! | TCGAGCTTCTACTATCATTT+TGG | + | chr1.4:8742749-8742768 | None:intergenic | 35.0% |
| ! | TTTATGGCTTGGACTTGTAT+AGG | - | chr1.4:8742979-8742998 | MS.gene51559:CDS | 35.0% |
| ! | TTTCCCAAAATTGATTCCCT+GGG | + | chr1.4:8741947-8741966 | None:intergenic | 35.0% |
| !! | TATCCTTTTGATGACAGGAA+CGG | + | chr1.4:8741874-8741893 | None:intergenic | 35.0% |
| !! | TTGATCTATAAGGGAGCATT+TGG | - | chr1.4:8739528-8739547 | MS.gene51559:intron | 35.0% |
| !! | TTGGTCTTAGGTTAAAGAGT+TGG | - | chr1.4:8741689-8741708 | MS.gene51559:intron | 35.0% |
| !!! | CATTTGGTGATGTGTTTTAC+AGG | - | chr1.4:8739544-8739563 | MS.gene51559:intron | 35.0% |
| AAAATATCCCCAAAGAACGG+AGG | + | chr1.4:8741901-8741920 | None:intergenic | 40.0% | |
| AAACCTGCTATCATAACTGC+TGG | + | chr1.4:8740876-8740895 | None:intergenic | 40.0% | |
| AAGCCAACAATACTTACGGT+AGG | + | chr1.4:8741615-8741634 | None:intergenic | 40.0% | |
| AAGGAATGCATTAGGCAACA+AGG | - | chr1.4:8741531-8741550 | MS.gene51559:CDS | 40.0% | |
| AAGTGAGTTCAAGATACCGA+AGG | - | chr1.4:8740211-8740230 | MS.gene51559:CDS | 40.0% | |
| ACATCATAGTGGTAAGCAGA+TGG | + | chr1.4:8740963-8740982 | None:intergenic | 40.0% | |
| ACTTACTTGTAGTGCCTTCT+GGG | + | chr1.4:8741993-8742012 | None:intergenic | 40.0% | |
| AGAGTTTAGCGACTCTTAGA+AGG | - | chr1.4:8741156-8741175 | MS.gene51559:intron | 40.0% | |
| AGCCTGTTGCATGAAAAGAA+CGG | + | chr1.4:8740076-8740095 | None:intergenic | 40.0% | |
| AGGAACGGCTAAAAGTGATA+AGG | + | chr1.4:8741859-8741878 | None:intergenic | 40.0% | |
| AGGGTTGCAGAGGAATTATT+TGG | - | chr1.4:8740039-8740058 | MS.gene51559:intron | 40.0% | |
| ATATCCCGGTAGATTCTTCA+GGG | + | chr1.4:8743009-8743028 | None:intergenic | 40.0% | |
| ATTCCAGCAGTTATGATAGC+AGG | - | chr1.4:8740870-8740889 | MS.gene51559:intron | 40.0% | |
| CTATGTGCATACATGTCCAA+TGG | - | chr1.4:8741649-8741668 | MS.gene51559:intron | 40.0% | |
| GCAACTCCTACAATCAACAA+AGG | + | chr1.4:8739646-8739665 | None:intergenic | 40.0% | |
| GCTAACTCTTCCTAGCAAAA+TGG | - | chr1.4:8740125-8740144 | MS.gene51559:intron | 40.0% | |
| GGCTGCTTGGTAAGTATATT+TGG | - | chr1.4:8739750-8739769 | MS.gene51559:CDS | 40.0% | |
| GTACTTGAGTTTATCTACCG+GGG | + | chr1.4:8741422-8741441 | None:intergenic | 40.0% | |
| GTCCAACATACTACCATCAT+TGG | + | chr1.4:8740622-8740641 | None:intergenic | 40.0% | |
| GTTGACCACCAAATATTGAG+TGG | + | chr1.4:8739624-8739643 | None:intergenic | 40.0% | |
| GTTTACCCTGAAGAATCTAC+CGG | - | chr1.4:8743001-8743020 | MS.gene51559:CDS | 40.0% | |
| TAAGAGAGAGATTGCTTCCA+AGG | - | chr1.4:8742342-8742361 | MS.gene51559:intron | 40.0% | |
| TACCCTTGCCATACATCTTT+GGG | - | chr1.4:8740841-8740860 | MS.gene51559:intron | 40.0% | |
| TACTTACTTGTAGTGCCTTC+TGG | + | chr1.4:8741994-8742013 | None:intergenic | 40.0% | |
| TACTTGAGTTTATCTACCGG+GGG | + | chr1.4:8741421-8741440 | None:intergenic | 40.0% | |
| TCGGTATCTTGAACTCACTT+AGG | + | chr1.4:8740211-8740230 | None:intergenic | 40.0% | |
| TCTTGCACTTCTACTTACCA+TGG | + | chr1.4:8740330-8740349 | None:intergenic | 40.0% | |
| TGCTCTCCAAAAGCAATAAC+AGG | + | chr1.4:8739283-8739302 | None:intergenic | 40.0% | |
| TGGATTTGTGCAATCTGTAC+TGG | - | chr1.4:8739208-8739227 | MS.gene51559:intron | 40.0% | |
| TTGACATCCACAGCTATATG+TGG | - | chr1.4:8739592-8739611 | MS.gene51559:intron | 40.0% | |
| TTTACAGTTGATCCGAAGGA+AGG | - | chr1.4:8741494-8741513 | MS.gene51559:CDS | 40.0% | |
| TTTACCCTGAAGAATCTACC+GGG | - | chr1.4:8743002-8743021 | MS.gene51559:CDS | 40.0% | |
| TTTCATGCAACAGGCTATAG+AGG | - | chr1.4:8740080-8740099 | MS.gene51559:intron | 40.0% | |
| TTTGTTCCAGGGTTTGTGTT+TGG | - | chr1.4:8739953-8739972 | MS.gene51559:CDS | 40.0% | |
| ! | AACAAGGGATTTTCAGCCTT+CGG | + | chr1.4:8740230-8740249 | None:intergenic | 40.0% |
| ! | ACTCTTATTTGCGGCATTCT+TGG | - | chr1.4:8741086-8741105 | MS.gene51559:intron | 40.0% |
| ! | CAGGTAAGCACCATATTTTG+CGG | - | chr1.4:8741179-8741198 | MS.gene51559:CDS | 40.0% |
| ! | CTTTCCCAAAATTGATTCCC+TGG | + | chr1.4:8741948-8741967 | None:intergenic | 40.0% |
| ! | GCACTTCCTGTTATTGCTTT+TGG | - | chr1.4:8739274-8739293 | MS.gene51559:intron | 40.0% |
| ! | GGTAAGCAGATGGTTTTTGA+AGG | + | chr1.4:8740953-8740972 | None:intergenic | 40.0% |
| ! | GGTCAACCTTTGTTGATTGT+AGG | - | chr1.4:8739637-8739656 | MS.gene51559:intron | 40.0% |
| ! | TACCGTTCTTTTCATGCAAC+AGG | - | chr1.4:8740071-8740090 | MS.gene51559:intron | 40.0% |
| ! | TCTCCCAGGGAATCAATTTT+GGG | - | chr1.4:8741941-8741960 | MS.gene51559:CDS | 40.0% |
| ! | TGTCTTTTCGCGCAGAATTT+TGG | - | chr1.4:8742163-8742182 | MS.gene51559:CDS | 40.0% |
| ! | TTTTCGCGCAGAATTTTGGA+AGG | - | chr1.4:8742167-8742186 | MS.gene51559:CDS | 40.0% |
| !! | ATTAGGTGCCAAGCTGTTTT+TGG | - | chr1.4:8739723-8739742 | MS.gene51559:intron | 40.0% |
| !! | CAGGGAATCAATTTTGGGAA+AGG | - | chr1.4:8741946-8741965 | MS.gene51559:CDS | 40.0% |
| !! | GTAGGTATCCTTTTGATGAC+AGG | + | chr1.4:8741879-8741898 | None:intergenic | 40.0% |
| !! | TGGTACTGACTCTACAAATG+AGG | + | chr1.4:8742201-8742220 | None:intergenic | 40.0% |
| !!! | TTGGTGATGTGTTTTACAGG+TGG | - | chr1.4:8739547-8739566 | MS.gene51559:intron | 40.0% |
| AACAATACTTACGGTAGGCG+CGG | + | chr1.4:8741610-8741629 | None:intergenic | 45.0% | |
| AACAGCTTGGCACCTAATTC+TGG | + | chr1.4:8739721-8739740 | None:intergenic | 45.0% | |
| AACCTGAATCTCTCTACCAC+TGG | - | chr1.4:8740716-8740735 | MS.gene51559:intron | 45.0% | |
| ACACCAGATGGAACTTTGCT+CGG | + | chr1.4:8740664-8740683 | None:intergenic | 45.0% | |
| ACCCTTGCCATACATCTTTG+GGG | - | chr1.4:8740842-8740861 | MS.gene51559:intron | 45.0% | |
| AGAGTGCGAAGGAATGCATT+AGG | - | chr1.4:8741523-8741542 | MS.gene51559:CDS | 45.0% | |
| AGATGGAACTTTGCTCGGTA+TGG | + | chr1.4:8740659-8740678 | None:intergenic | 45.0% | |
| AGTGGACAAAGCAACCTTCT+AGG | + | chr1.4:8740688-8740707 | None:intergenic | 45.0% | |
| ATACCGAGCAAAGTTCCATC+TGG | - | chr1.4:8740658-8740677 | MS.gene51559:intron | 45.0% | |
| ATACCTACCTCCGTTCTTTG+GGG | - | chr1.4:8741891-8741910 | MS.gene51559:CDS | 45.0% | |
| ATTCAATCAGGGTGCATACG+AGG | - | chr1.4:8740574-8740593 | MS.gene51559:CDS | 45.0% | |
| ATTGAATGCCAAAGGGAGAC+AGG | + | chr1.4:8740561-8740580 | None:intergenic | 45.0% | |
| CACCCTGATTGAATGCCAAA+GGG | + | chr1.4:8740568-8740587 | None:intergenic | 45.0% | |
| CATATCCCGGTAGATTCTTC+AGG | + | chr1.4:8743010-8743029 | None:intergenic | 45.0% | |
| CCAAATAGGGCCGCAAAATA+TGG | + | chr1.4:8741192-8741211 | None:intergenic | 45.0% | |
| CTACCACTGGACTGTAGTTA+AGG | - | chr1.4:8740729-8740748 | MS.gene51559:intron | 45.0% | |
| CTCCCTTTGGCATTCAATCA+GGG | - | chr1.4:8740563-8740582 | MS.gene51559:CDS | 45.0% | |
| CTTACTTGTAGTGCCTTCTG+GGG | + | chr1.4:8741992-8742011 | None:intergenic | 45.0% | |
| GAAGGACTCCATTTACTGGA+GGG | + | chr1.4:8741115-8741134 | None:intergenic | 45.0% | |
| GATACCTACCTCCGTTCTTT+GGG | - | chr1.4:8741890-8741909 | MS.gene51559:CDS | 45.0% | |
| GCGAGCCGTGTTTATAGAAA+TGG | - | chr1.4:8741581-8741600 | MS.gene51559:intron | 45.0% | |
| GGATTGACACGGATACCTAT+TGG | - | chr1.4:8742278-8742297 | MS.gene51559:intron | 45.0% | |
| GGCTGAAAATCCCTTGTTAG+AGG | - | chr1.4:8740232-8740251 | MS.gene51559:CDS | 45.0% | |
| GTACCCTTGCCATACATCTT+TGG | - | chr1.4:8740840-8740859 | MS.gene51559:intron | 45.0% | |
| GTACCTTAACTACAGTCCAG+TGG | + | chr1.4:8740735-8740754 | None:intergenic | 45.0% | |
| TAACTTCTCCTGTCTCCCTT+TGG | - | chr1.4:8740550-8740569 | MS.gene51559:intron | 45.0% | |
| TAGCCGTTCCTGTCATCAAA+AGG | - | chr1.4:8741868-8741887 | MS.gene51559:CDS | 45.0% | |
| TAGGTTTACTAGGGTTGCAG+AGG | - | chr1.4:8740029-8740048 | MS.gene51559:intron | 45.0% | |
| TCATAGCGTAGCTTCCAAGA+TGG | - | chr1.4:8740908-8740927 | MS.gene51559:intron | 45.0% | |
| TCTCCCTTTGGCATTCAATC+AGG | - | chr1.4:8740562-8740581 | MS.gene51559:CDS | 45.0% | |
| TGACTGCAACTGCAGGATAT+GGG | - | chr1.4:8740813-8740832 | MS.gene51559:intron | 45.0% | |
| TGAGGAAGGACTCCATTTAC+TGG | + | chr1.4:8741119-8741138 | None:intergenic | 45.0% | |
| TGATGTCCAAACACAAACCC+TGG | + | chr1.4:8739962-8739981 | None:intergenic | 45.0% | |
| TTACTTGTAGTGCCTTCTGG+GGG | + | chr1.4:8741991-8742010 | None:intergenic | 45.0% | |
| TTAGTATGCATAGGGGACTG+AGG | + | chr1.4:8741137-8741156 | None:intergenic | 45.0% | |
| TTCCAAGATGGCTCAACAGA+AGG | - | chr1.4:8740920-8740939 | MS.gene51559:intron | 45.0% | |
| TTCCATCTGGTGTTCCTAGA+AGG | - | chr1.4:8740671-8740690 | MS.gene51559:intron | 45.0% | |
| TTCCTTCTGTTGAGCCATCT+TGG | + | chr1.4:8740925-8740944 | None:intergenic | 45.0% | |
| TTGACACGGATACCTATTGG+TGG | - | chr1.4:8742281-8742300 | MS.gene51559:intron | 45.0% | |
| TTGACTGCAACTGCAGGATA+TGG | - | chr1.4:8740812-8740831 | MS.gene51559:intron | 45.0% | |
| TTTAGCGACTCTTAGAAGGC+AGG | - | chr1.4:8741160-8741179 | MS.gene51559:intron | 45.0% | |
| ! | AACCTTCTAGGAACACCAGA+TGG | + | chr1.4:8740676-8740695 | None:intergenic | 45.0% |
| ! | AAGTCATTGACTGCAACTGC+AGG | - | chr1.4:8740806-8740825 | MS.gene51559:intron | 45.0% |
| ! | AGAGTTGGAGACTTTGAAGG+AGG | - | chr1.4:8741704-8741723 | MS.gene51559:intron | 45.0% |
| ! | ATGGCAATTGATAGTCTCCC+AGG | - | chr1.4:8741927-8741946 | MS.gene51559:CDS | 45.0% |
| ! | CCATATTTTGCGGCCCTATT+TGG | - | chr1.4:8741189-8741208 | MS.gene51559:CDS | 45.0% |
| ! | GTCTCCCAGGGAATCAATTT+TGG | - | chr1.4:8741940-8741959 | MS.gene51559:CDS | 45.0% |
| ! | GTTGCTTTGTCCACTTCCTT+GGG | - | chr1.4:8740693-8740712 | MS.gene51559:intron | 45.0% |
| ! | TAGAGAGATTCAGGTTCCCA+AGG | + | chr1.4:8740712-8740731 | None:intergenic | 45.0% |
| ! | TGGCAATTGATAGTCTCCCA+GGG | - | chr1.4:8741928-8741947 | MS.gene51559:CDS | 45.0% |
| ! | TTCTTTTCATCACCCCCAGA+AGG | - | chr1.4:8741976-8741995 | MS.gene51559:intron | 45.0% |
| !!! | GTGTGTTTTTAGTCCCTCGT+CGG | - | chr1.4:8742550-8742569 | MS.gene51559:CDS | 45.0% |
| !!! | TGCCAAGCTGTTTTTGGCTT+GGG | - | chr1.4:8739729-8739748 | MS.gene51559:CDS | 45.0% |
| !!! | TGGGTTACTTTTCACTGCCA+TGG | - | chr1.4:8740310-8740329 | MS.gene51559:CDS | 45.0% |
| ACAGTTGATCCGAAGGAAGG+TGG | - | chr1.4:8741497-8741516 | MS.gene51559:CDS | 50.0% | |
| AGCCCAAGCCAAAAACAGCT+TGG | + | chr1.4:8739734-8739753 | None:intergenic | 50.0% | |
| CACTCTTCACCACCTTCCTT+CGG | + | chr1.4:8741509-8741528 | None:intergenic | 50.0% | |
| CTTGGTCTCCCTCCAGTAAA+TGG | - | chr1.4:8741104-8741123 | MS.gene51559:intron | 50.0% | |
| GCAACTGCAGGATATGGGAA+AGG | - | chr1.4:8740818-8740837 | MS.gene51559:intron | 50.0% | |
| GCACCCTGATTGAATGCCAA+AGG | + | chr1.4:8740569-8740588 | None:intergenic | 50.0% | |
| GCCCCAAAGATGTATGGCAA+GGG | + | chr1.4:8740846-8740865 | None:intergenic | 50.0% | |
| GGAAGGACTCCATTTACTGG+AGG | + | chr1.4:8741116-8741135 | None:intergenic | 50.0% | |
| GGATACCTACCTCCGTTCTT+TGG | - | chr1.4:8741889-8741908 | MS.gene51559:CDS | 50.0% | |
| GTCCAGTGGTAGAGAGATTC+AGG | + | chr1.4:8740721-8740740 | None:intergenic | 50.0% | |
| GTCTCACAAGTGATTACCCC+CGG | - | chr1.4:8741402-8741421 | MS.gene51559:intron | 50.0% | |
| TATCCCCAAAGAACGGAGGT+AGG | + | chr1.4:8741897-8741916 | None:intergenic | 50.0% | |
| TATGCATAGGGGACTGAGGA+AGG | + | chr1.4:8741133-8741152 | None:intergenic | 50.0% | |
| TGCCCCAAAGATGTATGGCA+AGG | + | chr1.4:8740847-8740866 | None:intergenic | 50.0% | |
| ! | ATGCTTTTAGGCTCCGACGA+GGG | + | chr1.4:8742566-8742585 | None:intergenic | 50.0% |
| ! | CGAGGTGTCATCGCAGATTA+TGG | - | chr1.4:8740592-8740611 | MS.gene51559:CDS | 50.0% |
| ! | GATTCAGGTTCCCAAGGAAG+TGG | + | chr1.4:8740706-8740725 | None:intergenic | 50.0% |
| ! | GCGCCTACCGTAAGTATTGT+TGG | - | chr1.4:8741609-8741628 | MS.gene51559:intron | 50.0% |
| ! | GGTTGCTTTGTCCACTTCCT+TGG | - | chr1.4:8740692-8740711 | MS.gene51559:intron | 50.0% |
| !!! | GTGCCAAGCTGTTTTTGGCT+TGG | - | chr1.4:8739728-8739747 | MS.gene51559:CDS | 50.0% |
| !!! | TGTTTTTGGCTTGGGCTGCT+TGG | - | chr1.4:8739737-8739756 | MS.gene51559:CDS | 50.0% |
| ! | CATGCTTTTAGGCTCCGACG+AGG | + | chr1.4:8742567-8742586 | None:intergenic | 55.0% |
| ! | GAAGGTGGTGAAGAGTGCGA+AGG | - | chr1.4:8741512-8741531 | MS.gene51559:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 8739145 | 8743030 | 8739145 | ID=MS.gene51559 |
| chr1.4 | mRNA | 8739145 | 8743030 | 8739145 | ID=MS.gene51559.t1;Parent=MS.gene51559 |
| chr1.4 | exon | 8742856 | 8743030 | 8742856 | ID=MS.gene51559.t1.exon1;Parent=MS.gene51559.t1 |
| chr1.4 | CDS | 8742856 | 8743030 | 8742856 | ID=cds.MS.gene51559.t1;Parent=MS.gene51559.t1 |
| chr1.4 | exon | 8742417 | 8742609 | 8742417 | ID=MS.gene51559.t1.exon2;Parent=MS.gene51559.t1 |
| chr1.4 | CDS | 8742417 | 8742609 | 8742417 | ID=cds.MS.gene51559.t1;Parent=MS.gene51559.t1 |
| chr1.4 | exon | 8742074 | 8742212 | 8742074 | ID=MS.gene51559.t1.exon3;Parent=MS.gene51559.t1 |
| chr1.4 | CDS | 8742074 | 8742212 | 8742074 | ID=cds.MS.gene51559.t1;Parent=MS.gene51559.t1 |
| chr1.4 | exon | 8741807 | 8741972 | 8741807 | ID=MS.gene51559.t1.exon4;Parent=MS.gene51559.t1 |
| chr1.4 | CDS | 8741807 | 8741972 | 8741807 | ID=cds.MS.gene51559.t1;Parent=MS.gene51559.t1 |
| chr1.4 | exon | 8741425 | 8741591 | 8741425 | ID=MS.gene51559.t1.exon5;Parent=MS.gene51559.t1 |
| chr1.4 | CDS | 8741425 | 8741591 | 8741425 | ID=cds.MS.gene51559.t1;Parent=MS.gene51559.t1 |
| chr1.4 | exon | 8741174 | 8741347 | 8741174 | ID=MS.gene51559.t1.exon6;Parent=MS.gene51559.t1 |
| chr1.4 | CDS | 8741174 | 8741347 | 8741174 | ID=cds.MS.gene51559.t1;Parent=MS.gene51559.t1 |
| chr1.4 | exon | 8740994 | 8741089 | 8740994 | ID=MS.gene51559.t1.exon7;Parent=MS.gene51559.t1 |
| chr1.4 | CDS | 8740994 | 8741089 | 8740994 | ID=cds.MS.gene51559.t1;Parent=MS.gene51559.t1 |
| chr1.4 | exon | 8740558 | 8740674 | 8740558 | ID=MS.gene51559.t1.exon8;Parent=MS.gene51559.t1 |
| chr1.4 | CDS | 8740558 | 8740674 | 8740558 | ID=cds.MS.gene51559.t1;Parent=MS.gene51559.t1 |
| chr1.4 | exon | 8740169 | 8740476 | 8740169 | ID=MS.gene51559.t1.exon9;Parent=MS.gene51559.t1 |
| chr1.4 | CDS | 8740169 | 8740476 | 8740169 | ID=cds.MS.gene51559.t1;Parent=MS.gene51559.t1 |
| chr1.4 | exon | 8739727 | 8739997 | 8739727 | ID=MS.gene51559.t1.exon10;Parent=MS.gene51559.t1 |
| chr1.4 | CDS | 8739727 | 8739997 | 8739727 | ID=cds.MS.gene51559.t1;Parent=MS.gene51559.t1 |
| chr1.4 | exon | 8739360 | 8739545 | 8739360 | ID=MS.gene51559.t1.exon11;Parent=MS.gene51559.t1 |
| chr1.4 | CDS | 8739360 | 8739545 | 8739360 | ID=cds.MS.gene51559.t1;Parent=MS.gene51559.t1 |
| chr1.4 | exon | 8739145 | 8739174 | 8739145 | ID=MS.gene51559.t1.exon12;Parent=MS.gene51559.t1 |
| chr1.4 | CDS | 8739145 | 8739174 | 8739145 | ID=cds.MS.gene51559.t1;Parent=MS.gene51559.t1 |
| Gene Sequence |
| Protein sequence |
