Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026799.t1 | PNY17407.1 | 88 | 642 | 46 | 4 | 70 | 709 | 3 | 615 | 0.00E+00 | 1112.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026799.t1 | Q9XI23 | 71.1 | 655 | 180 | 3 | 64 | 709 | 10 | 664 | 8.9e-274 | 944.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026799.t1 | A0A2K3PQ58 | 88.0 | 642 | 46 | 4 | 70 | 709 | 3 | 615 | 0.0e+00 | 1112.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026799 | MS.gene017877 | PPI |
| MS.gene026799 | MS.gene60262 | PPI |
| MS.gene026799 | MS.gene014107 | PPI |
| MS.gene81622 | MS.gene026799 | PPI |
| MS.gene026799 | MS.gene51559 | PPI |
| MS.gene016743 | MS.gene026799 | PPI |
| MS.gene026799 | MS.gene81620 | PPI |
| MS.gene026799 | MS.gene81617 | PPI |
| MS.gene014805 | MS.gene026799 | PPI |
| MS.gene016742 | MS.gene026799 | PPI |
| MS.gene026799 | MS.gene39051 | PPI |
| MS.gene026799 | MS.gene070503 | PPI |
| MS.gene026799 | MS.gene070507 | PPI |
| MS.gene37911 | MS.gene026799 | PPI |
| MS.gene026799 | MS.gene057883 | PPI |
| MS.gene026799 | MS.gene42533 | PPI |
| MS.gene070509 | MS.gene026799 | PPI |
| MS.gene015968 | MS.gene026799 | PPI |
| MS.gene026799 | MS.gene016758 | PPI |
| MS.gene026799 | MS.gene61680 | PPI |
| MS.gene072928 | MS.gene026799 | PPI |
| MS.gene026799 | MS.gene070492 | PPI |
| MS.gene026799 | MS.gene070510 | PPI |
| MS.gene026799 | MS.gene070511 | PPI |
| MS.gene026799 | MS.gene057884 | PPI |
| MS.gene070505 | MS.gene026799 | PPI |
| MS.gene057886 | MS.gene026799 | PPI |
| MS.gene32602 | MS.gene026799 | PPI |
| MS.gene81615 | MS.gene026799 | PPI |
| MS.gene026799 | MS.gene67840 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026799.t1 | MTR_0459s0020 | 78.086 | 648 | 135 | 4 | 60 | 700 | 9 | 656 | 0.0 | 1026 |
| MS.gene026799.t1 | MTR_3g107730 | 68.092 | 655 | 198 | 4 | 63 | 709 | 1 | 652 | 0.0 | 914 |
| MS.gene026799.t1 | MTR_0366s0020 | 69.922 | 645 | 109 | 3 | 60 | 700 | 9 | 572 | 0.0 | 886 |
| MS.gene026799.t1 | MTR_1g011840 | 65.997 | 647 | 211 | 3 | 66 | 706 | 3 | 646 | 0.0 | 885 |
| MS.gene026799.t1 | MTR_3g107730 | 70.349 | 516 | 150 | 1 | 63 | 578 | 1 | 513 | 0.0 | 775 |
| MS.gene026799.t1 | MTR_7g110000 | 58.269 | 647 | 258 | 4 | 66 | 701 | 7 | 652 | 0.0 | 753 |
| MS.gene026799.t1 | MTR_3g077670 | 58.476 | 643 | 254 | 7 | 66 | 696 | 7 | 648 | 0.0 | 728 |
| MS.gene026799.t1 | MTR_2g032690 | 57.098 | 641 | 263 | 5 | 66 | 696 | 7 | 645 | 0.0 | 721 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026799.t1 | AT1G15460 | 71.145 | 655 | 180 | 3 | 64 | 709 | 10 | 664 | 0.0 | 979 |
| MS.gene026799.t1 | AT1G15460 | 71.145 | 655 | 180 | 3 | 64 | 709 | 10 | 664 | 0.0 | 979 |
| MS.gene026799.t1 | AT1G74810 | 68.397 | 655 | 198 | 4 | 64 | 709 | 10 | 664 | 0.0 | 941 |
| MS.gene026799.t1 | AT1G74810 | 68.397 | 655 | 198 | 4 | 64 | 709 | 10 | 664 | 0.0 | 941 |
| MS.gene026799.t1 | AT1G74810 | 68.397 | 655 | 198 | 4 | 64 | 709 | 10 | 664 | 0.0 | 941 |
| MS.gene026799.t1 | AT1G15460 | 72.330 | 618 | 162 | 3 | 64 | 672 | 10 | 627 | 0.0 | 937 |
| MS.gene026799.t1 | AT1G74810 | 68.750 | 624 | 186 | 4 | 95 | 709 | 9 | 632 | 0.0 | 894 |
| MS.gene026799.t1 | AT1G74810 | 68.750 | 624 | 186 | 4 | 95 | 709 | 9 | 632 | 0.0 | 894 |
| MS.gene026799.t1 | AT4G32510 | 65.309 | 663 | 214 | 5 | 60 | 706 | 1 | 663 | 0.0 | 890 |
| MS.gene026799.t1 | AT4G32510 | 65.309 | 663 | 214 | 5 | 60 | 706 | 1 | 663 | 0.0 | 889 |
| MS.gene026799.t1 | AT5G25430 | 65.278 | 648 | 216 | 2 | 66 | 704 | 9 | 656 | 0.0 | 884 |
| MS.gene026799.t1 | AT1G15460 | 70.072 | 558 | 158 | 3 | 161 | 709 | 1 | 558 | 0.0 | 817 |
| MS.gene026799.t1 | AT1G74810 | 67.384 | 558 | 173 | 4 | 161 | 709 | 1 | 558 | 0.0 | 783 |
| MS.gene026799.t1 | AT3G62270 | 59.624 | 639 | 249 | 4 | 66 | 696 | 7 | 644 | 0.0 | 772 |
| MS.gene026799.t1 | AT2G47160 | 59.531 | 640 | 247 | 4 | 66 | 696 | 7 | 643 | 0.0 | 768 |
| MS.gene026799.t1 | AT2G47160 | 57.293 | 665 | 247 | 5 | 66 | 696 | 7 | 668 | 0.0 | 755 |
| MS.gene026799.t1 | AT3G06450 | 55.748 | 635 | 277 | 2 | 66 | 696 | 9 | 643 | 0.0 | 751 |
| MS.gene026799.t1 | AT3G06450 | 55.748 | 635 | 277 | 2 | 66 | 696 | 9 | 643 | 0.0 | 751 |
| MS.gene026799.t1 | AT3G06450 | 55.748 | 635 | 277 | 2 | 66 | 696 | 9 | 643 | 0.0 | 751 |
| MS.gene026799.t1 | AT3G06450 | 55.748 | 635 | 277 | 2 | 66 | 696 | 9 | 643 | 0.0 | 751 |
| MS.gene026799.t1 | AT1G74810 | 67.370 | 521 | 161 | 4 | 198 | 709 | 1 | 521 | 0.0 | 727 |
Find 145 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTGCATCTAGTTCTTTA+AGG | 0.119813 | 4.1:-84816432 | None:intergenic |
| GGAATCATACATTCAATTAT+TGG | 0.192328 | 4.1:+84812576 | MS.gene026799:CDS |
| GTCTTCCTGGTAATCAATTC+TGG | 0.223462 | 4.1:+84815956 | MS.gene026799:CDS |
| TTTGATCATAGTGTTGCTTC+TGG | 0.240147 | 4.1:+84814225 | MS.gene026799:CDS |
| TTTCCAATGTGTCTATTTCT+TGG | 0.240352 | 4.1:+84816297 | MS.gene026799:CDS |
| GTCTATTTCTTGGTTTGTTT+TGG | 0.242089 | 4.1:+84816307 | MS.gene026799:CDS |
| GTTCATTCAAGAGGCTATTA+AGG | 0.247348 | 4.1:+84813237 | MS.gene026799:CDS |
| CTTTGCTCATTTACTCTAAC+AGG | 0.255775 | 4.1:-84815817 | None:intergenic |
| TGTGCTTTCCGTTCTGGTAT+TGG | 0.264166 | 4.1:+84810827 | MS.gene026799:CDS |
| TGGACTTGTGCTTTCCGTTC+TGG | 0.268770 | 4.1:+84810821 | MS.gene026799:CDS |
| CTTTGTTAATGATAGGATAT+TGG | 0.271262 | 4.1:+84810953 | MS.gene026799:intron |
| AGAGCAAGATCTTGGTTATA+TGG | 0.279601 | 4.1:+84813499 | MS.gene026799:CDS |
| TCACTGATAATTCCCTTAAA+TGG | 0.290715 | 4.1:-84810764 | None:intergenic |
| TGCTTTATTTATGCTTGAAA+TGG | 0.291519 | 4.1:+84810727 | MS.gene026799:CDS |
| TTAAAAGAGGTAATCTTAAA+AGG | 0.294451 | 4.1:+84815733 | MS.gene026799:CDS |
| CATTATGACATATTCTTACT+AGG | 0.298991 | 4.1:+84814294 | MS.gene026799:CDS |
| GTGGTTAAAATCACCATTTA+AGG | 0.299786 | 4.1:+84810751 | MS.gene026799:CDS |
| TCACATAAAGCCAGTGAAAT+TGG | 0.305810 | 4.1:-84813417 | None:intergenic |
| GTGCTTTCCGTTCTGGTATT+GGG | 0.307157 | 4.1:+84810828 | MS.gene026799:CDS |
| CTTTATGTGAATGGTTTACT+AGG | 0.330252 | 4.1:+84813430 | MS.gene026799:CDS |
| GCTTTGCCTGTTATTGCCTT+TGG | 0.333578 | 4.1:+84811005 | MS.gene026799:CDS |
| AAGAAGACTATGTATCTAAT+TGG | 0.335535 | 4.1:-84816268 | None:intergenic |
| TTCACCTAGCTTTGGATCAA+TGG | 0.338378 | 4.1:+84816664 | MS.gene026799:CDS |
| GCTAGCAACTCTGAAATCTA+TGG | 0.346046 | 4.1:+84815209 | MS.gene026799:CDS |
| GGAAACAAGATTCCAGCTAT+TGG | 0.355801 | 4.1:-84816343 | None:intergenic |
| ATGGCCATTGATAGTCTTCC+TGG | 0.358761 | 4.1:+84815943 | MS.gene026799:CDS |
| CTAGGTATTATATTCACATT+TGG | 0.359706 | 4.1:+84813448 | MS.gene026799:CDS |
| GCAAGCAGTGTTTGTGGAAA+TGG | 0.365305 | 4.1:+84815238 | MS.gene026799:CDS |
| ATTCCTGCCTTGATGGTAGC+AGG | 0.375523 | 4.1:+84814192 | MS.gene026799:CDS |
| TGCTCACCAAAGGCAATAAC+AGG | 0.379306 | 4.1:-84811011 | None:intergenic |
| AGAAGCTTTATTGCAGACTA+TGG | 0.379594 | 4.1:+84813800 | MS.gene026799:CDS |
| TTTCACTGGCTTTATGTGAA+TGG | 0.387832 | 4.1:+84813421 | MS.gene026799:CDS |
| CATATTCTTACTAGGATTTG+TGG | 0.394900 | 4.1:+84814302 | MS.gene026799:CDS |
| TTGATCATAGTGTTGCTTCT+GGG | 0.397693 | 4.1:+84814226 | MS.gene026799:CDS |
| AGAGGAGCAACTAGTCTTCT+TGG | 0.398425 | 4.1:-84813893 | None:intergenic |
| GCTTTATTTATGCTTGAAAT+GGG | 0.406736 | 4.1:+84810728 | MS.gene026799:CDS |
| GTGGGGATACTTTGCATACA+TGG | 0.407230 | 4.1:+84815924 | MS.gene026799:CDS |
| CACAATGTTATAAAGATGAT+TGG | 0.423839 | 4.1:+84810801 | MS.gene026799:CDS |
| ACTTTGATTTGTGGACTACT+TGG | 0.426646 | 4.1:+84814444 | MS.gene026799:CDS |
| AATCTCCATCTTTGCACCAT+TGG | 0.428946 | 4.1:+84813924 | MS.gene026799:CDS |
| GGGTCATCATGCTTCCTTTG+TGG | 0.430230 | 4.1:+84816237 | MS.gene026799:CDS |
| CAAATGGATTCACCTAGCTT+TGG | 0.430914 | 4.1:+84816656 | MS.gene026799:CDS |
| CTGGCTTCTACAGCCATTTG+TGG | 0.431750 | 4.1:+84812555 | MS.gene026799:CDS |
| ATTTCAGACTTCTGTGGAAA+GGG | 0.431944 | 4.1:+84815699 | MS.gene026799:intron |
| ATATCGTCAACAGATTTACT+AGG | 0.432276 | 4.1:+84813176 | MS.gene026799:CDS |
| CATGCATCAATATGCTTCTC+AGG | 0.433291 | 4.1:-84815790 | None:intergenic |
| GACTAGTTGCTCCTCTAGCT+TGG | 0.433751 | 4.1:+84813900 | MS.gene026799:CDS |
| AGAGCAGAAGAGCAAGATCT+TGG | 0.434649 | 4.1:+84813491 | MS.gene026799:CDS |
| ACTTACTTGAACCACCTACT+AGG | 0.441604 | 4.1:-84816006 | None:intergenic |
| GAGCAAGATCTTGGTTATAT+GGG | 0.443047 | 4.1:+84813500 | MS.gene026799:CDS |
| ATCTTAAAAGGTGAAGATAA+AGG | 0.446293 | 4.1:+84815745 | MS.gene026799:CDS |
| TTCTCTTTGTGTCACCTAGT+AGG | 0.452706 | 4.1:+84815992 | MS.gene026799:CDS |
| GCAAAGAAAATATAGGTAGT+TGG | 0.454754 | 4.1:-84810978 | None:intergenic |
| CTCCTAGCAATATTTAATGT+TGG | 0.457606 | 4.1:+84813151 | MS.gene026799:CDS |
| ACATTTCAGACTTTGATTTG+TGG | 0.458488 | 4.1:+84814435 | MS.gene026799:intron |
| GTGCTCGGGTCAAACCTTGC+TGG | 0.460960 | 4.1:+84810559 | MS.gene026799:CDS |
| AGATCTTGGTTATATGGGAC+AGG | 0.463073 | 4.1:+84813505 | MS.gene026799:CDS |
| TCTTCCTGGTAATCAATTCT+GGG | 0.464011 | 4.1:+84815957 | MS.gene026799:CDS |
| TAGAGAGGAAAGACATGGTC+AGG | 0.466319 | 4.1:+84816760 | MS.gene026799:CDS |
| CTCCTACAATGAGGAGTGGT+TGG | 0.469360 | 4.1:-84812602 | None:intergenic |
| TATCCCCACAAAACTGAAGT+TGG | 0.470017 | 4.1:-84815910 | None:intergenic |
| TTTAGCAAAGTTGTACAAGT+AGG | 0.472082 | 4.1:-84812652 | None:intergenic |
| TGAATGTATGATTCCACAAA+TGG | 0.480302 | 4.1:-84812568 | None:intergenic |
| AGCAGAAGCAAAGAAAATAT+AGG | 0.482036 | 4.1:-84810985 | None:intergenic |
| TTCAGTCTTGTTCATTCAAG+AGG | 0.482368 | 4.1:+84813228 | MS.gene026799:CDS |
| ACTGTCCAATGGTGCAAAGA+TGG | 0.487827 | 4.1:-84813929 | None:intergenic |
| CACGCTACACCAACGTGCTC+GGG | 0.488102 | 4.1:+84810545 | MS.gene026799:CDS |
| CTTTCCCAGAATTGATTACC+AGG | 0.490212 | 4.1:-84815961 | None:intergenic |
| TGGTTAAAATCACCATTTAA+GGG | 0.490480 | 4.1:+84810752 | MS.gene026799:CDS |
| CCTCTCAGTTCTCAAGGGTC+TGG | 0.490548 | 4.1:+84814518 | MS.gene026799:CDS |
| GGAATTATCAGTGATATAAG+AGG | 0.491020 | 4.1:+84810773 | MS.gene026799:CDS |
| CTTGGCTTACCTCCTTCAAA+TGG | 0.497540 | 4.1:+84814462 | MS.gene026799:CDS |
| CCACGCTACACCAACGTGCT+CGG | 0.498826 | 4.1:+84810544 | MS.gene026799:CDS |
| TTCCTGCCTTGATGGTAGCA+GGG | 0.499828 | 4.1:+84814193 | MS.gene026799:CDS |
| GTGGTGAGGACTAAAGAACT+TGG | 0.503779 | 4.1:-84816410 | None:intergenic |
| ACTAGTTGCTCCTCTAGCTT+GGG | 0.506471 | 4.1:+84813901 | MS.gene026799:CDS |
| GCTGAATATGAAGAAATTGC+TGG | 0.508359 | 4.1:+84816451 | MS.gene026799:CDS |
| TAAGAGCCTCTCAGTTCTCA+AGG | 0.513791 | 4.1:+84814512 | MS.gene026799:CDS |
| TGAGGAAGAACACCATTTGA+AGG | 0.516885 | 4.1:-84814474 | None:intergenic |
| AAAGATGCAAGCAGTGTTTG+TGG | 0.516975 | 4.1:+84815232 | MS.gene026799:CDS |
| GGCCAACCACTCCTCATTGT+AGG | 0.517222 | 4.1:+84812600 | MS.gene026799:CDS |
| GTGACATGGATTCCAATAGC+TGG | 0.521942 | 4.1:+84816331 | MS.gene026799:CDS |
| GATTAAATTTCAGACTTCTG+TGG | 0.522445 | 4.1:+84815693 | MS.gene026799:intron |
| CAGAACAGTACCAATTTCAC+TGG | 0.525064 | 4.1:+84813407 | MS.gene026799:CDS |
| AATTTCAGACTTCTGTGGAA+AGG | 0.526786 | 4.1:+84815698 | MS.gene026799:intron |
| ATTTCCATTGATCCAAAGCT+AGG | 0.528239 | 4.1:-84816668 | None:intergenic |
| CTGGTAATCAATTCTGGGAA+AGG | 0.528888 | 4.1:+84815962 | MS.gene026799:CDS |
| AGTCTTCTTGGAATTTCAGA+AGG | 0.536248 | 4.1:-84813881 | None:intergenic |
| GTAGATGATCAGAAGAAAGA+TGG | 0.537686 | 4.1:+84815154 | MS.gene026799:intron |
| TTCTGGGATGGCACAACAGA+AGG | 0.538374 | 4.1:+84814242 | MS.gene026799:CDS |
| ATTACCAGGAAGACTATCAA+TGG | 0.540612 | 4.1:-84815947 | None:intergenic |
| TTATGCTGCAGGACATGGGA+AGG | 0.542317 | 4.1:+84814139 | MS.gene026799:intron |
| GTTGGAAGAGATTGCAGAAG+AGG | 0.544644 | 4.1:+84810254 | MS.gene026799:CDS |
| TATTTATGCTTGAAATGGGG+TGG | 0.553496 | 4.1:+84810732 | MS.gene026799:CDS |
| TCTTTGTGTCACCTAGTAGG+TGG | 0.553721 | 4.1:+84815995 | MS.gene026799:CDS |
| TGGTGAGGACTAAAGAACTT+GGG | 0.554627 | 4.1:-84816409 | None:intergenic |
| TGCCAACATTAAATATTGCT+AGG | 0.555211 | 4.1:-84813153 | None:intergenic |
| CATACACTCAAAGAGAGTCT+TGG | 0.555643 | 4.1:-84816478 | None:intergenic |
| AGCCCTGCTACCATCAAGGC+AGG | 0.556589 | 4.1:-84814195 | None:intergenic |
| ATCGACTAGAACAACAACTA+AGG | 0.559094 | 4.1:+84810590 | MS.gene026799:CDS |
| AAACCAAGAAATAGACACAT+TGG | 0.559958 | 4.1:-84816300 | None:intergenic |
| CAGAACTTTAAGCTTTAGAG+AGG | 0.561772 | 4.1:+84816745 | MS.gene026799:CDS |
| TAGGTATACATGATGATGGT+GGG | 0.568391 | 4.1:-84812633 | None:intergenic |
| TCGATTCAGCTGCTCACCAA+AGG | 0.568516 | 4.1:-84811021 | None:intergenic |
| GTCGATAATATTCTCCAGCA+AGG | 0.572893 | 4.1:-84810573 | None:intergenic |
| CAATTTATGCTGCAGGACAT+GGG | 0.573504 | 4.1:+84814135 | MS.gene026799:intron |
| GTAAAGCCCTGCTACCATCA+AGG | 0.579565 | 4.1:-84814199 | None:intergenic |
| ATCATACATTCAATTATTGG+AGG | 0.587308 | 4.1:+84812579 | MS.gene026799:CDS |
| GGAACTAGAGAACTTAAAAG+AGG | 0.588872 | 4.1:+84815720 | MS.gene026799:CDS |
| TCTAGTTCTTTAAGGTGGTG+AGG | 0.589908 | 4.1:-84816424 | None:intergenic |
| TATCGTCAACAGATTTACTA+GGG | 0.593342 | 4.1:+84813177 | MS.gene026799:CDS |
| TATGCTGCAGGACATGGGAA+GGG | 0.598343 | 4.1:+84814140 | MS.gene026799:intron |
| TCATAGTGTTGCTTCTGGGA+TGG | 0.600477 | 4.1:+84814230 | MS.gene026799:CDS |
| AAAGATGGTTGAAACTGCCA+AGG | 0.602722 | 4.1:+84815169 | MS.gene026799:CDS |
| TCTTCAATGTTGTATAGAGA+AGG | 0.603043 | 4.1:-84813471 | None:intergenic |
| TGCAGAAGAGGACATGCGGT+GGG | 0.606983 | 4.1:+84810266 | MS.gene026799:CDS |
| CTGCATCTAGTTCTTTAAGG+TGG | 0.609386 | 4.1:-84816429 | None:intergenic |
| TTAGTATGCATAGGAGATTG+AGG | 0.610628 | 4.1:-84814492 | None:intergenic |
| TGTAAAGAAAACATGTCGGT+TGG | 0.614904 | 4.1:+84810236 | None:intergenic |
| GAGAGGCTCTTAGTATGCAT+AGG | 0.616506 | 4.1:-84814501 | None:intergenic |
| AAGAGCCTCTCAGTTCTCAA+GGG | 0.616777 | 4.1:+84814513 | MS.gene026799:CDS |
| AGAAGAGGACATGCGGTGGG+AGG | 0.617792 | 4.1:+84810269 | MS.gene026799:CDS |
| CAAGTAGGTATACATGATGA+TGG | 0.617804 | 4.1:-84812637 | None:intergenic |
| AATTGGTACTGTTTCCACAA+AGG | 0.619899 | 4.1:-84816251 | None:intergenic |
| GATGAATTAACTACAAGCAG+AGG | 0.625445 | 4.1:+84816710 | MS.gene026799:CDS |
| GTAGGTATACATGATGATGG+TGG | 0.632071 | 4.1:-84812634 | None:intergenic |
| TTACTTTGATAACTGTCCAA+TGG | 0.633020 | 4.1:-84813940 | None:intergenic |
| ATGTCATAATGATATGCAGA+AGG | 0.635380 | 4.1:-84814282 | None:intergenic |
| CTTTATTTATGCTTGAAATG+GGG | 0.642163 | 4.1:+84810729 | MS.gene026799:CDS |
| TTGCAGAAGAGGACATGCGG+TGG | 0.643834 | 4.1:+84810265 | MS.gene026799:CDS |
| AGCTTTAGAGAGGAAAGACA+TGG | 0.645374 | 4.1:+84816755 | MS.gene026799:CDS |
| GATGGAGATTCCCAAGCTAG+AGG | 0.645592 | 4.1:-84813911 | None:intergenic |
| ATTGAGCACAGTAGAAACAC+TGG | 0.647913 | 4.1:+84812536 | MS.gene026799:CDS |
| GGAAGAACACCATTTGAAGG+AGG | 0.648209 | 4.1:-84814471 | None:intergenic |
| GGTGAGGACTAAAGAACTTG+GGG | 0.660807 | 4.1:-84816408 | None:intergenic |
| CCGAGCACGTTGGTGTAGCG+TGG | 0.664256 | 4.1:-84810544 | None:intergenic |
| AAACTTACCCAATACCAGAA+CGG | 0.665316 | 4.1:-84810835 | None:intergenic |
| GAGGACTAAAGAACTTGGGG+AGG | 0.669482 | 4.1:-84816405 | None:intergenic |
| AGATTGCAGAAGAGGACATG+CGG | 0.669556 | 4.1:+84810262 | MS.gene026799:CDS |
| GAGCAGCTGAATCGAGACAC+AGG | 0.681742 | 4.1:+84811029 | MS.gene026799:CDS |
| GCAACTCCTACAATGAGGAG+TGG | 0.695067 | 4.1:-84812606 | None:intergenic |
| GGTGGGAGGAGATCGCGTGT+TGG | 0.698275 | 4.1:+84810283 | MS.gene026799:CDS |
| GTTCTGCAACTCCTACAATG+AGG | 0.722737 | 4.1:-84812611 | None:intergenic |
| AAGGTTTGACCCGAGCACGT+TGG | 0.732425 | 4.1:-84810554 | None:intergenic |
| CCAGACCCTTGAGAACTGAG+AGG | 0.733266 | 4.1:-84814518 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 84810248 | 84817320 | 84810248 | ID=MS.gene026799 |
| chr4.1 | mRNA | 84810248 | 84817320 | 84810248 | ID=MS.gene026799.t1;Parent=MS.gene026799 |
| chr4.1 | exon | 84810248 | 84810304 | 84810248 | ID=MS.gene026799.t1.exon1;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84810248 | 84810304 | 84810248 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84810517 | 84810611 | 84810517 | ID=MS.gene026799.t1.exon2;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84810517 | 84810611 | 84810517 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84810721 | 84810849 | 84810721 | ID=MS.gene026799.t1.exon3;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84810721 | 84810849 | 84810721 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84810968 | 84811050 | 84810968 | ID=MS.gene026799.t1.exon4;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84810968 | 84811050 | 84810968 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84812529 | 84812721 | 84812529 | ID=MS.gene026799.t1.exon5;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84812529 | 84812721 | 84812529 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84813120 | 84813258 | 84813120 | ID=MS.gene026799.t1.exon6;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84813120 | 84813258 | 84813120 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84813361 | 84813526 | 84813361 | ID=MS.gene026799.t1.exon7;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84813361 | 84813526 | 84813361 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84813792 | 84813958 | 84813792 | ID=MS.gene026799.t1.exon8;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84813792 | 84813958 | 84813792 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84814150 | 84814323 | 84814150 | ID=MS.gene026799.t1.exon9;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84814150 | 84814323 | 84814150 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84814444 | 84814539 | 84814444 | ID=MS.gene026799.t1.exon10;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84814444 | 84814539 | 84814444 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84815158 | 84815274 | 84815158 | ID=MS.gene026799.t1.exon11;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84815158 | 84815274 | 84815158 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84815706 | 84816022 | 84815706 | ID=MS.gene026799.t1.exon12;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84815706 | 84816022 | 84815706 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84816228 | 84816495 | 84816228 | ID=MS.gene026799.t1.exon13;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84816228 | 84816495 | 84816228 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84816656 | 84816781 | 84816656 | ID=MS.gene026799.t1.exon14;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84816656 | 84816781 | 84816656 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| chr4.1 | exon | 84817312 | 84817320 | 84817312 | ID=MS.gene026799.t1.exon15;Parent=MS.gene026799.t1 |
| chr4.1 | CDS | 84817312 | 84817320 | 84817312 | ID=cds.MS.gene026799.t1;Parent=MS.gene026799.t1 |
| Gene Sequence |
| Protein sequence |
