AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89068


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89068.t1 MTR_0459s0020 97.527 647 16 0 1 647 9 655 0.0 1293
MS.gene89068.t1 MTR_0366s0020 85.162 647 12 2 1 647 9 571 0.0 1087
MS.gene89068.t1 MTR_3g107730 67.319 664 207 5 7 666 4 661 0.0 904
MS.gene89068.t1 MTR_1g011840 65.902 654 209 5 7 655 3 647 0.0 884
MS.gene89068.t1 MTR_7g110000 59.545 660 248 7 1 649 1 652 0.0 759
MS.gene89068.t1 MTR_3g107730 70.155 516 148 3 7 522 4 513 0.0 759
MS.gene89068.t1 MTR_3g077670 59.633 654 248 8 1 644 1 648 0.0 739
MS.gene89068.t1 MTR_2g032690 55.940 665 280 7 1 659 1 658 0.0 731
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89068.t1 AT1G15460 73.152 663 170 5 5 662 10 669 0.0 1004
MS.gene89068.t1 AT1G15460 73.152 663 170 5 5 662 10 669 0.0 1004
MS.gene89068.t1 AT1G74810 70.181 664 190 6 5 663 10 670 0.0 966
MS.gene89068.t1 AT1G74810 70.181 664 190 6 5 663 10 670 0.0 966
MS.gene89068.t1 AT1G74810 70.181 664 190 6 5 663 10 670 0.0 966
MS.gene89068.t1 AT1G15460 74.351 616 152 3 5 615 10 624 0.0 951
MS.gene89068.t1 AT1G74810 70.616 633 178 6 36 663 9 638 0.0 924
MS.gene89068.t1 AT1G74810 70.616 633 178 6 36 663 9 638 0.0 924
MS.gene89068.t1 AT4G32510 64.985 674 219 4 1 661 1 670 0.0 899
MS.gene89068.t1 AT4G32510 64.645 676 220 5 1 661 1 672 0.0 894
MS.gene89068.t1 AT5G25430 64.361 665 225 5 7 661 9 671 0.0 881
MS.gene89068.t1 AT1G15460 72.085 566 150 5 102 662 1 563 0.0 844
MS.gene89068.t1 AT1G74810 69.136 567 167 6 102 663 1 564 0.0 811
MS.gene89068.t1 AT3G62270 58.769 650 256 6 1 644 1 644 0.0 775
MS.gene89068.t1 AT2G47160 59.049 652 250 7 1 644 1 643 0.0 769
MS.gene89068.t1 AT2G47160 56.869 677 250 8 1 644 1 668 0.0 756
MS.gene89068.t1 AT1G74810 69.057 530 156 6 139 663 1 527 0.0 753
MS.gene89068.t1 AT3G06450 57.098 641 266 6 7 644 9 643 0.0 746
MS.gene89068.t1 AT3G06450 57.098 641 266 6 7 644 9 643 0.0 746
MS.gene89068.t1 AT3G06450 57.098 641 266 6 7 644 9 643 0.0 746
MS.gene89068.t1 AT3G06450 57.098 641 266 6 7 644 9 643 0.0 746

Find 146 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAAGATGATTGGATTTC+TGG 0.111845 2.4:-2252604 MS.gene89068:CDS
GTCTTCCAGGGAATCAATTT+TGG 0.134809 2.4:-2249384 MS.gene89068:CDS
CTTCCAATGTGTGTATTTCT+TGG 0.170065 2.4:-2249112 MS.gene89068:CDS
CTTTGCTCCTTTACTCTTAC+AGG 0.197580 2.4:+2249523 None:intergenic
CTCCTTTATCTTCACCATTT+AGG 0.206563 2.4:+2249596 None:intergenic
TTGCATACAACCAATGAAAT+TGG 0.241608 2.4:+2251393 None:intergenic
ATTTCCTTTGATCCAACTTT+AGG 0.269524 2.4:+2248557 None:intergenic
ATGGCCATTGATAGTCTTCC+AGG 0.308078 2.4:-2249397 MS.gene89068:CDS
ACTTTGCTTTGCGGACTAAT+TGG 0.314493 2.4:-2250420 MS.gene89068:CDS
CAACAAAGAGTGATTGTAAA+AGG 0.321096 2.4:+2249491 None:intergenic
GCTAGCAACTCTGAAATATA+TGG 0.324871 2.4:-2249910 MS.gene89068:CDS
TCTGGTCTCACCTCGGGAAC+CGG 0.338415 2.4:-2252586 MS.gene89068:CDS
AAAGTTGGATCAAAGGAAAT+AGG 0.338981 2.4:-2248554 MS.gene89068:CDS
GTCCTAAATGGTGAAGATAA+AGG 0.340166 2.4:-2249598 MS.gene89068:CDS
GCAAGCAGTGTTTATAGAAA+TGG 0.348954 2.4:-2249881 MS.gene89068:CDS
GAACTTTAAAACACCTTTCA+AGG 0.350968 2.4:-2252662 MS.gene89068:CDS
CTAGGAATTATATTTACATT+TGG 0.352264 2.4:-2251362 MS.gene89068:CDS
AAAGGTGCAATGAGTCTTCT+TGG 0.360459 2.4:+2250918 None:intergenic
TGTAAATCTATTGATGATAA+TGG 0.361270 2.4:+2251649 None:intergenic
TATATTGTTACTAGGATTCA+TGG 0.361875 2.4:-2250549 MS.gene89068:intron
AAGAAGACTCATTGCACCTT+TGG 0.363002 2.4:-2250916 MS.gene89068:CDS
AAGTTTCAATATATCCTTCC+AGG 0.363554 2.4:-2248923 MS.gene89068:intron
TTTCTTCCCTATGCTTTCCT+TGG 0.368598 2.4:+2249933 None:intergenic
CTTCAACTCCCCTCTATTAG+TGG 0.374928 2.4:+2248505 None:intergenic
TTTCATTGGTTGTATGCAAA+TGG 0.375839 2.4:-2251389 MS.gene89068:CDS
GTGTATTTCTTGGTTTGTTT+CGG 0.376715 2.4:-2249102 MS.gene89068:CDS
TGGATAAATACCAATTTCAT+TGG 0.376832 2.4:-2251403 MS.gene89068:CDS
GTTCAGTCCAAACCATCTTA+TGG 0.377113 2.4:-2248992 MS.gene89068:CDS
GCTCTACCTGTTATTGCCTT+CGG 0.378072 2.4:-2252288 MS.gene89068:CDS
AGAGCAAGGTCATGGTTATA+TGG 0.380446 2.4:-2251311 MS.gene89068:CDS
GACTCATTGCACCTTTGGCT+TGG 0.386343 2.4:-2250911 MS.gene89068:CDS
CACTATGATATATTGTTACT+AGG 0.386511 2.4:-2250557 MS.gene89068:CDS
ACTCATTGCACCTTTGGCTT+GGG 0.387576 2.4:-2250910 MS.gene89068:CDS
AATAGATTTACAAGGATTGC+TGG 0.391026 2.4:-2251638 MS.gene89068:CDS
CCTTCGGCGCGCAGCTCAGT+AGG 0.392561 2.4:-2252272 MS.gene89068:CDS
TCTAGTTCCATAAGATGGTT+TGG 0.393919 2.4:+2248985 None:intergenic
TGCGCGCCGAAGGCAATAAC+AGG 0.398211 2.4:+2252282 None:intergenic
TTCTGTTTCTTGCAGGTTGT+TGG 0.401494 2.4:-2249196 MS.gene89068:intron
CTAATGTAATGACAGGATAT+TGG 0.402665 2.4:-2252340 MS.gene89068:intron
GTGGGGATACTTTGCTTACA+TGG 0.403973 2.4:-2249416 MS.gene89068:CDS
TGGTTTGGACTGAACAGCTT+GGG 0.404145 2.4:+2249000 None:intergenic
GTAGCAAATAAAGTACCTTC+TGG 0.404289 2.4:-2250945 MS.gene89068:CDS
GTAAAGCCCTGCTATCATTA+AGG 0.406993 2.4:+2250652 None:intergenic
GGGAACAACATTCCAGCAAT+TGG 0.408916 2.4:+2249066 None:intergenic
CCTTTGAATGGTAGTTGATC+CGG 0.413260 2.4:-2249975 MS.gene89068:intron
TATGTATCAATGTGTTTCTC+AGG 0.414246 2.4:+2249550 None:intergenic
AGGTCATGGTTATATGGAAC+AGG 0.417558 2.4:-2251305 MS.gene89068:intron
ATTGGTTTGCCTCCTTCAAA+TGG 0.421666 2.4:-2250402 MS.gene89068:CDS
ATTCATTCAAGAAGCTATCA+AGG 0.426466 2.4:-2251585 MS.gene89068:intron
AACAATACTATATGTTTGAA+TGG 0.431054 2.4:+2249141 None:intergenic
GATGAGTTAACCACTAATAG+AGG 0.431064 2.4:-2248515 MS.gene89068:CDS
CTGGCTTCTACAGCCATTTG+TGG 0.431750 2.4:-2252096 MS.gene89068:CDS
TCTGGCTGTTCTCAAGAAAC+AGG 0.433528 2.4:-2250346 MS.gene89068:intron
CCCTATGCACACTAAGAGTC+TGG 0.433791 2.4:-2250364 MS.gene89068:CDS
TGGATTTCTGGTCTCACCTC+GGG 0.434401 2.4:-2252592 MS.gene89068:CDS
TAATTTCTACTGCAGGATAT+GGG 0.437992 2.4:-2250716 MS.gene89068:intron
GGATATGGGGAAGGTTTCTC+TGG 0.440745 2.4:-2250702 MS.gene89068:CDS
GTGACATGGATTCCAATTGC+TGG 0.442062 2.4:-2249078 MS.gene89068:CDS
CTTTCCCAAAATTGATTCCC+TGG 0.443499 2.4:+2249379 None:intergenic
TGTACAAATATGTGTACATA+AGG 0.443809 2.4:+2252010 None:intergenic
TAGTGAGGAAAGAAATAATC+AGG 0.446285 2.4:-2248465 MS.gene89068:intron
CCAGACTCTTAGTGTGCATA+GGG 0.449413 2.4:+2250364 None:intergenic
AGACTACGGAGTACCATTCT+TGG 0.450555 2.4:-2251000 MS.gene89068:CDS
ATCCCAACTGGCACAACAAA+AGG 0.453892 2.4:-2250609 MS.gene89068:CDS
GTTCCAGCCTTAATGATAGC+AGG 0.457381 2.4:-2250659 MS.gene89068:CDS
CCATAGTGTTGCATCCCAAC+TGG 0.460445 2.4:-2250621 MS.gene89068:CDS
CACTAATAGAGGGGAGTTGA+AGG 0.464456 2.4:-2248504 MS.gene89068:CDS
ACTTACTTGTACCATCTACT+AGG 0.469677 2.4:+2249334 None:intergenic
CTGCATCTAGTTCCATAAGA+TGG 0.475531 2.4:+2248980 None:intergenic
AATTGGTATTTATCCAATGT+TGG 0.476559 2.4:+2251410 None:intergenic
ATATGTGTACATAAGGATAG+TGG 0.481601 2.4:+2252017 None:intergenic
GTCCACACCACGACCAAGAA+TGG 0.488986 2.4:+2250987 None:intergenic
CAGTACACTATAAAGATGAT+TGG 0.496597 2.4:-2252612 MS.gene89068:CDS
GATACCAACTTCAGTATTGT+GGG 0.497715 2.4:-2249434 MS.gene89068:CDS
GATATATTGAAACTTAGTCT+TGG 0.499697 2.4:+2248931 None:intergenic
TGATACCAACTTCAGTATTG+TGG 0.501818 2.4:-2249435 MS.gene89068:CDS
GGACAACCTCTTCTAATACT+AGG 0.505448 2.4:-2252051 MS.gene89068:CDS
TGAGGCAGAACTCCATTTGA+AGG 0.507599 2.4:+2250390 None:intergenic
TGAGTTTGAAGTTCCTAAAG+AGG 0.507705 2.4:-2251438 MS.gene89068:CDS
CTGGTCTCACCTCGGGAACC+GGG 0.509024 2.4:-2252585 MS.gene89068:intron
TATCCCCACAATACTGAAGT+TGG 0.522863 2.4:+2249430 None:intergenic
CCAGTTGGGATGCAACACTA+TGG 0.523993 2.4:+2250621 None:intergenic
TGGTTTGTTTCGGAGTGACA+TGG 0.525308 2.4:-2249092 MS.gene89068:CDS
AGAAGTTTCATTGCAGACTA+CGG 0.527536 2.4:-2251014 MS.gene89068:CDS
GAGGTTGAATCACCTAAAGT+TGG 0.531337 2.4:-2248569 MS.gene89068:CDS
GGAGTGTATGATTCCACAAA+TGG 0.533498 2.4:+2252083 None:intergenic
ATTCCCTGGAAGACTATCAA+TGG 0.536657 2.4:+2249393 None:intergenic
ATGGTTTGGACTGAACAGCT+TGG 0.538575 2.4:+2248999 None:intergenic
AAACTTAGTCTTGGAGCACC+AGG 0.539260 2.4:+2248940 None:intergenic
ATTCAATCTCAAGAAACCTT+CGG 0.539298 2.4:-2250585 MS.gene89068:CDS
AATCTGCATCATTACATCAC+TGG 0.540888 2.4:-2250887 MS.gene89068:CDS
AGCCCTGCTATCATTAAGGC+TGG 0.544922 2.4:+2250656 None:intergenic
ATCACCTAAAGTTGGATCAA+AGG 0.548835 2.4:-2248561 MS.gene89068:CDS
ACATCACTGGACAGTAATCA+AGG 0.549188 2.4:-2250874 MS.gene89068:intron
GTTTCTTGCAGGTTGTTGGA+AGG 0.549562 2.4:-2249192 MS.gene89068:intron
TTCCAGCCTTAATGATAGCA+GGG 0.549869 2.4:-2250658 MS.gene89068:CDS
ATATTTGCCTGTAAGAGTAA+AGG 0.551233 2.4:-2249530 MS.gene89068:CDS
TACCATTCTTGGTCGTGGTG+TGG 0.555716 2.4:-2250989 MS.gene89068:CDS
TTATCATCAATAGATTTACA+AGG 0.558991 2.4:-2251646 MS.gene89068:CDS
CTTAAGCACTGTGGAAACAC+TGG 0.559948 2.4:-2252115 MS.gene89068:CDS
AAAAGTGCCAAGGAAAGCAT+AGG 0.560350 2.4:-2249940 MS.gene89068:CDS
AAACCAAGAAATACACACAT+TGG 0.560504 2.4:+2249109 None:intergenic
CCTACTGAGCTGCGCGCCGA+AGG 0.560683 2.4:+2252272 None:intergenic
CGGAGTACCATTCTTGGTCG+TGG 0.560811 2.4:-2250994 MS.gene89068:CDS
AACTTTAAAACACCTTTCAA+GGG 0.561664 2.4:-2252661 MS.gene89068:CDS
AACATTTCAGGGTTTGTGTG+TGG 0.563862 2.4:-2251712 MS.gene89068:intron
TCTACTGCAGGATATGGGGA+AGG 0.568225 2.4:-2250711 MS.gene89068:intron
TTGTATGCAAATGGATTGCT+AGG 0.570857 2.4:-2251380 MS.gene89068:CDS
ACCTCTTCTAATACTAGGAG+TGG 0.574905 2.4:-2252046 MS.gene89068:CDS
GAGTTTGAAGTTCCTAAAGA+GGG 0.576153 2.4:-2251437 MS.gene89068:CDS
ATGAGTTAACCACTAATAGA+GGG 0.578037 2.4:-2248514 MS.gene89068:CDS
TATGTGTACATAAGGATAGT+GGG 0.579317 2.4:+2252018 None:intergenic
GTAGTTGATCCGGAGAAAGA+TGG 0.582803 2.4:-2249965 MS.gene89068:intron
AGTCTTCTTGGAACTCCAGA+AGG 0.583320 2.4:+2250930 None:intergenic
TCATCTACAATACCCTTGAA+AGG 0.584023 2.4:+2252649 None:intergenic
TTCAGTGGTAAAAGAACTAG+AGG 0.584201 2.4:-2249635 MS.gene89068:CDS
CTTCGGCGCGCAGCTCAGTA+GGG 0.585033 2.4:-2252271 MS.gene89068:CDS
GCGAAGAAAATATACATAGT+CGG 0.586779 2.4:+2252315 None:intergenic
TTGGATTTCTGGTCTCACCT+CGG 0.587523 2.4:-2252593 MS.gene89068:CDS
GCCACTCCTAGTATTAGAAG+AGG 0.587604 2.4:+2252045 None:intergenic
AAAGTGCCAAGGAAAGCATA+GGG 0.599451 2.4:-2249939 MS.gene89068:CDS
CTTTGAAAAGCAGAAGAGCA+AGG 0.604028 2.4:-2251325 MS.gene89068:CDS
AATTTCTACTGCAGGATATG+GGG 0.605058 2.4:-2250715 MS.gene89068:intron
AAAGCAGAAGAGCAAGGTCA+TGG 0.611771 2.4:-2251319 MS.gene89068:CDS
TGGCCATTGATAGTCTTCCA+GGG 0.613140 2.4:-2249396 MS.gene89068:CDS
TAGTTTGAATCAATTTCATG+AGG 0.613539 2.4:+2248336 None:intergenic
AAAGATGGTTAAAAGTGCCA+AGG 0.615685 2.4:-2249950 MS.gene89068:CDS
GGTTTGGACTGAACAGCTTG+GGG 0.624998 2.4:+2249001 None:intergenic
GCCAGACTCTTAGTGTGCAT+AGG 0.628841 2.4:+2250363 None:intergenic
TTAAGCTCAGGATACCTGGA+AGG 0.629128 2.4:+2248909 None:intergenic
AGAAGCTTACCCGGTTCCCG+AGG 0.631856 2.4:+2252576 None:intergenic
GCGCAGCTCAGTAGGGACAC+AGG 0.636641 2.4:-2252264 MS.gene89068:intron
TTAGTGTGCATAGGGGATTG+AGG 0.641800 2.4:+2250372 None:intergenic
GGCAGAACTCCATTTGAAGG+AGG 0.642786 2.4:+2250393 None:intergenic
CAGAACTACTAGCTTTAGTG+AGG 0.650371 2.4:-2248480 MS.gene89068:CDS
AGTTTGAAGTTCCTAAAGAG+GGG 0.658460 2.4:-2251436 MS.gene89068:CDS
GATGCAGATTCCCAAGCCAA+AGG 0.659339 2.4:+2250900 None:intergenic
GTTTGAAGTTCCTAAAGAGG+GGG 0.659389 2.4:-2251435 MS.gene89068:CDS
ATATCATAGTGATATGCCGA+AGG 0.665100 2.4:+2250569 None:intergenic
GAATGGTACTGACTCAACAA+AGG 0.665677 2.4:+2249158 None:intergenic
ATACCAACTTCAGTATTGTG+GGG 0.692806 2.4:-2249433 MS.gene89068:CDS
CAGACTCTTAGTGTGCATAG+GGG 0.698650 2.4:+2250365 None:intergenic
TGAGTTAACCACTAATAGAG+GGG 0.699565 2.4:-2248513 MS.gene89068:CDS
GGTTCTGCAGAATCATTCAG+TGG 0.700197 2.4:-2249650 MS.gene89068:intron
AGATGGAAGCTTAAGCACTG+TGG 0.724558 2.4:-2252124 MS.gene89068:CDS
GCTGAATATGAAGAAATACC+TGG 0.725840 2.4:-2248958 MS.gene89068:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGTAATTTAGTTATTAT+TGG + chr2.4:2251319-2251338 None:intergenic 10.0%
!! ATTTAAAAGAAATTAAAATC+TGG + chr2.4:2249802-2249821 None:intergenic 10.0%
!! ATGAAATATCATAATTGAAA+AGG + chr2.4:2252351-2252370 None:intergenic 15.0%
!! ATTATTGTATTGAATCTTTA+GGG - chr2.4:2249532-2249551 MS.gene89068:CDS 15.0%
!! TATTATTGTATTGAATCTTT+AGG - chr2.4:2249531-2249550 MS.gene89068:CDS 15.0%
!! TTTATATATGATATCTTGTA+TGG - chr2.4:2250489-2250508 MS.gene89068:intron 15.0%
!!! CTTTTGCTAATAAATATATT+CGG - chr2.4:2251187-2251206 MS.gene89068:intron 15.0%
!!! TCATGTATATTTTGTTAAAA+TGG + chr2.4:2251713-2251732 None:intergenic 15.0%
!! AACAATACTATATGTTTGAA+TGG + chr2.4:2251864-2251883 None:intergenic 20.0%
!! AAGATTGAATTTGATATTAG+GGG - chr2.4:2250722-2250741 MS.gene89068:intron 20.0%
!! AATAATACTAATGTAATGAC+AGG - chr2.4:2248655-2248674 MS.gene89068:intron 20.0%
!! ACTTATTTGAGCTTATATAT+TGG - chr2.4:2250758-2250777 MS.gene89068:intron 20.0%
!! CAAGATTGAATTTGATATTA+GGG - chr2.4:2250721-2250740 MS.gene89068:intron 20.0%
!! CGAATATATTTATTAGCAAA+AGG + chr2.4:2251189-2251208 None:intergenic 20.0%
!! CTAGGAATTATATTTACATT+TGG - chr2.4:2249640-2249659 MS.gene89068:CDS 20.0%
!! TACAAAATACAAACAAGAAA+TGG + chr2.4:2248859-2248878 None:intergenic 20.0%
!! TATCAAATGAAACATGAATT+TGG - chr2.4:2249480-2249499 MS.gene89068:CDS 20.0%
!! TTATCATCAATAGATTTACA+AGG - chr2.4:2249356-2249375 MS.gene89068:CDS 20.0%
!!! ATGTTTTAATCATTGTCTAA+TGG - chr2.4:2249259-2249278 MS.gene89068:intron 20.0%
!!! TATATTTTACACAATACTCT+AGG - chr2.4:2252377-2252396 MS.gene89068:intron 20.0%
!!! TGTAAATCTATTGATGATAA+TGG + chr2.4:2249356-2249375 None:intergenic 20.0%
!!! TTCTATACTTTTTTTGTAAC+AGG - chr2.4:2252411-2252430 MS.gene89068:intron 20.0%
! AAAATGACAAAATTAAGCTC+AGG + chr2.4:2252108-2252127 None:intergenic 25.0%
! AAAGATATAACAAAGTCCAA+TGG + chr2.4:2250180-2250199 None:intergenic 25.0%
! AATTATGCCAAAAATAAGGA+AGG - chr2.4:2249014-2249033 MS.gene89068:CDS 25.0%
! AATTGGTATTTATCCAATGT+TGG + chr2.4:2249595-2249614 None:intergenic 25.0%
! ATGGATGTTATTAACATTTC+AGG - chr2.4:2249278-2249297 MS.gene89068:intron 25.0%
! ATTGAAATAAACACTAACAC+CGG - chr2.4:2251736-2251755 MS.gene89068:intron 25.0%
! CACTATGATATATTGTTACT+AGG - chr2.4:2250445-2250464 MS.gene89068:intron 25.0%
! GATATATTGAAACTTAGTCT+TGG + chr2.4:2252074-2252093 None:intergenic 25.0%
! GCAAGATTGAATTTGATATT+AGG - chr2.4:2250720-2250739 MS.gene89068:intron 25.0%
! GTACAATTATGCCAAAAATA+AGG - chr2.4:2249010-2249029 MS.gene89068:CDS 25.0%
! TAGTTTGAATCAATTTCATG+AGG + chr2.4:2252669-2252688 None:intergenic 25.0%
! TATAAAGATGATTGGATTTC+TGG - chr2.4:2248398-2248417 MS.gene89068:intron 25.0%
! TATAGCATATTGAAAACCAT+TGG - chr2.4:2250161-2250180 MS.gene89068:intron 25.0%
! TATATTGTTACTAGGATTCA+TGG - chr2.4:2250453-2250472 MS.gene89068:intron 25.0%
! TATCATAATTGAAAAGGCTT+TGG + chr2.4:2252345-2252364 None:intergenic 25.0%
! TCAATTAAGTCAATCAAAAC+AGG - chr2.4:2249226-2249245 MS.gene89068:intron 25.0%
! TGGATAAATACCAATTTCAT+TGG - chr2.4:2249599-2249618 MS.gene89068:CDS 25.0%
! TGGATGTTATTAACATTTCA+GGG - chr2.4:2249279-2249298 MS.gene89068:intron 25.0%
! TGTACAAATATGTGTACATA+AGG + chr2.4:2248995-2249014 None:intergenic 25.0%
! TTTATCTAACATATGCACTT+GGG + chr2.4:2249205-2249224 None:intergenic 25.0%
! TTTATTAGCAAAAGGATAAG+AGG + chr2.4:2251181-2251200 None:intergenic 25.0%
!! TTGAAAGATTTTGTCCTAAA+TGG - chr2.4:2251392-2251411 MS.gene89068:CDS 25.0%
!!! AACTTTAAAACACCTTTCAA+GGG - chr2.4:2248341-2248360 MS.gene89068:CDS 25.0%
!!! AAGAAAAGCATTAGTTTTGT+TGG + chr2.4:2250546-2250565 None:intergenic 25.0%
!!! CATACTTGCATGAATTTTTT+TGG + chr2.4:2248483-2248502 None:intergenic 25.0%
!!! TATACTTTTTTTGTAACAGG+AGG - chr2.4:2252414-2252433 MS.gene89068:intron 25.0%
!!! TCTTGTTTGTATTTTGTAGA+TGG - chr2.4:2248861-2248880 MS.gene89068:intron 25.0%
!!! TGAAGTTGGTATCATTTTTA+TGG + chr2.4:2251561-2251580 None:intergenic 25.0%
!!! TTTTCAAAGAAGTATAGAGA+AGG + chr2.4:2249666-2249685 None:intergenic 25.0%
AAACCAAGAAATACACACAT+TGG + chr2.4:2251896-2251915 None:intergenic 30.0%
AAAGTTGGATCAAAGGAAAT+AGG - chr2.4:2252448-2252467 MS.gene89068:intron 30.0%
AAGTTTCAATATATCCTTCC+AGG - chr2.4:2252079-2252098 MS.gene89068:CDS 30.0%
AATACCATGTAACATGTGAT+CGG + chr2.4:2250886-2250905 None:intergenic 30.0%
AATAGATTTACAAGGATTGC+TGG - chr2.4:2249364-2249383 MS.gene89068:CDS 30.0%
AATGTGATCAGCAAAAAGAA+TGG + chr2.4:2251966-2251985 None:intergenic 30.0%
AATTCATGCAAGTATGATCA+TGG - chr2.4:2248487-2248506 MS.gene89068:CDS 30.0%
ACATTGTTTGTTTATTGAGC+AGG - chr2.4:2249958-2249977 MS.gene89068:CDS 30.0%
AGCTTATATGTTAATCCAAC+AGG + chr2.4:2249108-2249127 None:intergenic 30.0%
ATAATTTCTACTGCAGGATA+TGG - chr2.4:2250285-2250304 MS.gene89068:intron 30.0%
ATATGTGTACATAAGGATAG+TGG + chr2.4:2248988-2249007 None:intergenic 30.0%
ATATTTGCCTGTAAGAGTAA+AGG - chr2.4:2251472-2251491 MS.gene89068:intron 30.0%
ATGAGTTAACCACTAATAGA+GGG - chr2.4:2252488-2252507 MS.gene89068:intron 30.0%
ATTCAATCTCAAGAAACCTT+CGG - chr2.4:2250417-2250436 MS.gene89068:CDS 30.0%
ATTCATTCAAGAAGCTATCA+AGG - chr2.4:2249417-2249436 MS.gene89068:CDS 30.0%
ATTTCCTTTGATCCAACTTT+AGG + chr2.4:2252448-2252467 None:intergenic 30.0%
CAACAAAGAGTGATTGTAAA+AGG + chr2.4:2251514-2251533 None:intergenic 30.0%
CAGAAAACAGCTTATTTGTA+TGG + chr2.4:2250833-2250852 None:intergenic 30.0%
CAGTACACTATAAAGATGAT+TGG - chr2.4:2248390-2248409 MS.gene89068:intron 30.0%
CATTGTTTGTTTATTGAGCA+GGG - chr2.4:2249959-2249978 MS.gene89068:CDS 30.0%
CTAATGTAATGACAGGATAT+TGG - chr2.4:2248662-2248681 MS.gene89068:intron 30.0%
CTTATATGTTAATCCAACAG+GGG + chr2.4:2249106-2249125 None:intergenic 30.0%
GCGAAGAAAATATACATAGT+CGG + chr2.4:2248690-2248709 None:intergenic 30.0%
GCTTATATGTTAATCCAACA+GGG + chr2.4:2249107-2249126 None:intergenic 30.0%
GTTTATCTAACATATGCACT+TGG + chr2.4:2249206-2249225 None:intergenic 30.0%
TAATTTCTACTGCAGGATAT+GGG - chr2.4:2250286-2250305 MS.gene89068:intron 30.0%
TAGTGAGGAAAGAAATAATC+AGG - chr2.4:2252537-2252556 MS.gene89068:intron 30.0%
TATGTATCAATGTGTTTCTC+AGG + chr2.4:2251455-2251474 None:intergenic 30.0%
TATGTGTACATAAGGATAGT+GGG + chr2.4:2248987-2249006 None:intergenic 30.0%
TTGCATACAACCAATGAAAT+TGG + chr2.4:2249612-2249631 None:intergenic 30.0%
! AACTTTTAGACTTTGCTTTG+CGG - chr2.4:2250573-2250592 MS.gene89068:CDS 30.0%
! ACATTGCATGTTCTAAATCA+CGG + chr2.4:2248629-2248648 None:intergenic 30.0%
! CTTTTACAATCACTCTTTGT+TGG - chr2.4:2251512-2251531 MS.gene89068:intron 30.0%
! GGTATTGTAGATGATTTTAG+GGG - chr2.4:2248362-2248381 MS.gene89068:intron 30.0%
! GTGATTCATTTTCCTTTGAA+TGG - chr2.4:2251015-2251034 MS.gene89068:CDS 30.0%
! TGTATTGAATCTTTAGGGAA+TGG - chr2.4:2249537-2249556 MS.gene89068:CDS 30.0%
! TTTCAATGATGAGTTTTTGC+AGG - chr2.4:2252638-2252657 MS.gene89068:CDS 30.0%
! TTTCATTGGTTGTATGCAAA+TGG - chr2.4:2249613-2249632 MS.gene89068:CDS 30.0%
! TTTGATATTAGGGGTTTGTT+TGG - chr2.4:2250731-2250750 MS.gene89068:intron 30.0%
! TTTTTGTAAGACCTAGTAGA+TGG - chr2.4:2251657-2251676 MS.gene89068:CDS 30.0%
!! ACATATTAGTTTGTTTGTGG+TGG - chr2.4:2249450-2249469 MS.gene89068:CDS 30.0%
!! AGAATTTTAATATTGCGACG+TGG - chr2.4:2248542-2248561 MS.gene89068:CDS 30.0%
!! CTGACATATTAGTTTGTTTG+TGG - chr2.4:2249447-2249466 MS.gene89068:CDS 30.0%
!! GAACTTTAAAACACCTTTCA+AGG - chr2.4:2248340-2248359 MS.gene89068:CDS 30.0%
!! GAATTTTAATATTGCGACGT+GGG - chr2.4:2248543-2248562 MS.gene89068:CDS 30.0%
!! GGGTATTGTAGATGATTTTA+GGG - chr2.4:2248361-2248380 MS.gene89068:intron 30.0%
!! GTGTATTTCTTGGTTTGTTT+CGG - chr2.4:2251900-2251919 MS.gene89068:intron 30.0%
!!! AGGGTATTGTAGATGATTTT+AGG - chr2.4:2248360-2248379 MS.gene89068:intron 30.0%
AAAAGGATAAGAGGATCAGA+AGG + chr2.4:2251172-2251191 None:intergenic 35.0%
AAAATTAAGCTCAGGATACC+TGG + chr2.4:2252100-2252119 None:intergenic 35.0%
AAAGGATAAGAGGATCAGAA+GGG + chr2.4:2251171-2251190 None:intergenic 35.0%
AACGTGCAATCTCGATTTAA+TGG + chr2.4:2252189-2252208 None:intergenic 35.0%
AATCTGCATCATTACATCAC+TGG - chr2.4:2250115-2250134 MS.gene89068:intron 35.0%
AATTTCTACTGCAGGATATG+GGG - chr2.4:2250287-2250306 MS.gene89068:intron 35.0%
ACATGTAATAGAAGCTTACC+CGG + chr2.4:2248438-2248457 None:intergenic 35.0%
ACTGACATAATTTCTACTGC+AGG - chr2.4:2250279-2250298 MS.gene89068:intron 35.0%
ACTTACTTGTACCATCTACT+AGG + chr2.4:2251671-2251690 None:intergenic 35.0%
AGAAGTTTCATTGCAGACTA+CGG - chr2.4:2249988-2250007 MS.gene89068:intron 35.0%
ATACCAACTTCAGTATTGTG+GGG - chr2.4:2251569-2251588 MS.gene89068:intron 35.0%
ATATACACAAAGCCTGAGTA+TGG - chr2.4:2250993-2251012 MS.gene89068:CDS 35.0%
ATATCATAGTGATATGCCGA+AGG + chr2.4:2250436-2250455 None:intergenic 35.0%
ATCACCTAAAGTTGGATCAA+AGG - chr2.4:2252441-2252460 MS.gene89068:intron 35.0%
ATCAGCAAAAAGAATGGCAA+AGG + chr2.4:2251960-2251979 None:intergenic 35.0%
CATTCATGAAGTCAACACAT+TGG + chr2.4:2252298-2252317 None:intergenic 35.0%
CTCCTTTATCTTCACCATTT+AGG + chr2.4:2251409-2251428 None:intergenic 35.0%
CTTACTTTCATAAGCTCTCA+AGG - chr2.4:2250853-2250872 MS.gene89068:intron 35.0%
CTTCCAATGTGTGTATTTCT+TGG - chr2.4:2251890-2251909 MS.gene89068:intron 35.0%
GAAAATGAATCACCATACTC+AGG + chr2.4:2251008-2251027 None:intergenic 35.0%
GAATCCAAATCCACTAATGA+TGG + chr2.4:2249761-2249780 None:intergenic 35.0%
GAGTTATGCATAGAGTGTAT+AGG + chr2.4:2248817-2248836 None:intergenic 35.0%
GATACCAACTTCAGTATTGT+GGG - chr2.4:2251568-2251587 MS.gene89068:intron 35.0%
GATGAGTTAACCACTAATAG+AGG - chr2.4:2252487-2252506 MS.gene89068:intron 35.0%
GCAAGCAGTGTTTATAGAAA+TGG - chr2.4:2251121-2251140 MS.gene89068:intron 35.0%
GCCAAAAATAAGGAAGGTTT+GGG - chr2.4:2249020-2249039 MS.gene89068:CDS 35.0%
GCTGAATATGAAGAAATACC+TGG - chr2.4:2252044-2252063 MS.gene89068:CDS 35.0%
GTCCTAAATGGTGAAGATAA+AGG - chr2.4:2251404-2251423 MS.gene89068:CDS 35.0%
TCAGCAAAAAGAATGGCAAA+GGG + chr2.4:2251959-2251978 None:intergenic 35.0%
TCATCTACAATACCCTTGAA+AGG + chr2.4:2248356-2248375 None:intergenic 35.0%
TGAGTTAACCACTAATAGAG+GGG - chr2.4:2252489-2252508 MS.gene89068:intron 35.0%
TGATACCAACTTCAGTATTG+TGG - chr2.4:2251567-2251586 MS.gene89068:intron 35.0%
TGCCAAAAATAAGGAAGGTT+TGG - chr2.4:2249019-2249038 MS.gene89068:CDS 35.0%
TTACTAATTGTTCCTGAGCA+TGG - chr2.4:2251331-2251350 MS.gene89068:CDS 35.0%
TTCAGTGGTAAAAGAACTAG+AGG - chr2.4:2251367-2251386 MS.gene89068:CDS 35.0%
TTCCAAAACCATGTCATGTT+TGG + chr2.4:2250256-2250275 None:intergenic 35.0%
TTGTGTATCCAAACATGACA+TGG - chr2.4:2250245-2250264 MS.gene89068:intron 35.0%
! AGAGCCAGAATTTTATAGGA+CGG + chr2.4:2251265-2251284 None:intergenic 35.0%
! AGTTTGAAGTTCCTAAAGAG+GGG - chr2.4:2249566-2249585 MS.gene89068:CDS 35.0%
! ATCCAAACATGACATGGTTT+TGG - chr2.4:2250251-2250270 MS.gene89068:intron 35.0%
! ATGATCATGGTTTGAAACTG+CGG - chr2.4:2248500-2248519 MS.gene89068:CDS 35.0%
! CACTCTATGCATAACTCTTT+TGG - chr2.4:2248820-2248839 MS.gene89068:intron 35.0%
! CACTTTTAACCATCTTTCTC+CGG + chr2.4:2251049-2251068 None:intergenic 35.0%
! GAGTTTGAAGTTCCTAAAGA+GGG - chr2.4:2249565-2249584 MS.gene89068:CDS 35.0%
! GGAATCATACACTCCATTTT+TGG - chr2.4:2248927-2248946 MS.gene89068:CDS 35.0%
! GTAGCAAATAAAGTACCTTC+TGG - chr2.4:2250057-2250076 MS.gene89068:intron 35.0%
! GTTCAGAGCCAGAATTTTAT+AGG + chr2.4:2251269-2251288 None:intergenic 35.0%
! TCTAGTTCCATAAGATGGTT+TGG + chr2.4:2252020-2252039 None:intergenic 35.0%
! TCTTCCAGGGAATCAATTTT+GGG - chr2.4:2251619-2251638 MS.gene89068:CDS 35.0%
! TCTTTTTGCTGATCACATTG+AGG - chr2.4:2251967-2251986 MS.gene89068:CDS 35.0%
! TGAGTTTGAAGTTCCTAAAG+AGG - chr2.4:2249564-2249583 MS.gene89068:CDS 35.0%
! TTTGGGAAGAGAACTCTTTT+TGG - chr2.4:2249037-2249056 MS.gene89068:CDS 35.0%
!! AAAGATGGTTAAAAGTGCCA+AGG - chr2.4:2251052-2251071 MS.gene89068:intron 35.0%
!! ATCATACACTCCATTTTTGG+TGG - chr2.4:2248930-2248949 MS.gene89068:CDS 35.0%
!! CATTGATTTCTGTTTCTTGC+AGG - chr2.4:2251799-2251818 MS.gene89068:intron 35.0%
!! GCTAGCAACTCTGAAATATA+TGG - chr2.4:2251092-2251111 MS.gene89068:intron 35.0%
!! GTTGGTATCATTTTTATGGC+AGG + chr2.4:2251557-2251576 None:intergenic 35.0%
!! TATCATTTTTATGGCAGGCA+TGG + chr2.4:2251552-2251571 None:intergenic 35.0%
!! TTGTATGCAAATGGATTGCT+AGG - chr2.4:2249622-2249641 MS.gene89068:CDS 35.0%
!!! AAGAGAACTCTTTTTGGCTT+GGG - chr2.4:2249043-2249062 MS.gene89068:CDS 35.0%
!!! GGTTTTAAGGGTCTTTACAA+CGG + chr2.4:2248575-2248594 None:intergenic 35.0%
!!! TCCCAAACCTTCCTTATTTT+TGG + chr2.4:2249024-2249043 None:intergenic 35.0%
AACATTTCAGGGTTTGTGTG+TGG - chr2.4:2249290-2249309 MS.gene89068:intron 40.0%
AAGAAGACTCATTGCACCTT+TGG - chr2.4:2250086-2250105 MS.gene89068:intron 40.0%
AAGAGGTTGTCCACCAAAAA+TGG + chr2.4:2248943-2248962 None:intergenic 40.0%
AAGGATAAGAGGATCAGAAG+GGG + chr2.4:2251170-2251189 None:intergenic 40.0%
ACAGGTTTGTCGAGAAAACT+CGG - chr2.4:2249715-2249734 MS.gene89068:intron 40.0%
ACATCACTGGACAGTAATCA+AGG - chr2.4:2250128-2250147 MS.gene89068:intron 40.0%
ACCTCTTCTAATACTAGGAG+TGG - chr2.4:2248956-2248975 MS.gene89068:CDS 40.0%
AGAGCAAGGTCATGGTTATA+TGG - chr2.4:2249691-2249710 MS.gene89068:intron 40.0%
AGGTCATGGTTATATGGAAC+AGG - chr2.4:2249697-2249716 MS.gene89068:intron 40.0%
ATTCCCTGGAAGACTATCAA+TGG + chr2.4:2251612-2251631 None:intergenic 40.0%
ATTTGGATTCAGCCACATCT+CGG - chr2.4:2249771-2249790 MS.gene89068:intron 40.0%
CAATCATTAGCATGGTTGGA+TGG - chr2.4:2249926-2249945 MS.gene89068:CDS 40.0%
CATCCAACCATGCTAATGAT+TGG + chr2.4:2249928-2249947 None:intergenic 40.0%
CCTTTGAATGGTAGTTGATC+CGG - chr2.4:2251027-2251046 MS.gene89068:intron 40.0%
CTTTGCTCCTTTACTCTTAC+AGG + chr2.4:2251482-2251501 None:intergenic 40.0%
GAGGTTGAATCACCTAAAGT+TGG - chr2.4:2252433-2252452 MS.gene89068:intron 40.0%
GGACAACCTCTTCTAATACT+AGG - chr2.4:2248951-2248970 MS.gene89068:CDS 40.0%
GGAGTGTATGATTCCACAAA+TGG + chr2.4:2248922-2248941 None:intergenic 40.0%
GGGTAAGCTTCTATTACATG+TGG - chr2.4:2248437-2248456 MS.gene89068:intron 40.0%
GTAAAGCCCTGCTATCATTA+AGG + chr2.4:2250353-2250372 None:intergenic 40.0%
GTTCAGTCCAAACCATCTTA+TGG - chr2.4:2252010-2252029 MS.gene89068:CDS 40.0%
TATCCCCACAATACTGAAGT+TGG + chr2.4:2251575-2251594 None:intergenic 40.0%
TGTTTGTTTATTGAGCAGGG+TGG - chr2.4:2249962-2249981 MS.gene89068:CDS 40.0%
TTCCAGCCTTAATGATAGCA+GGG - chr2.4:2250344-2250363 MS.gene89068:intron 40.0%
TTTCTTCCCTATGCTTTCCT+TGG + chr2.4:2251072-2251091 None:intergenic 40.0%
! AAAGGTGCAATGAGTCTTCT+TGG + chr2.4:2250087-2250106 None:intergenic 40.0%
! AAAGTGCCAAGGAAAGCATA+GGG - chr2.4:2251063-2251082 MS.gene89068:intron 40.0%
! AACCATGCTAATGATTGGTC+CGG + chr2.4:2249923-2249942 None:intergenic 40.0%
! ACTTTGCTTTGCGGACTAAT+TGG - chr2.4:2250582-2250601 MS.gene89068:CDS 40.0%
! AGCCAGAATTTTATAGGACG+GGG + chr2.4:2251263-2251282 None:intergenic 40.0%
! CTGCATCTAGTTCCATAAGA+TGG + chr2.4:2252025-2252044 None:intergenic 40.0%
! CTTTCCCAAAATTGATTCCC+TGG + chr2.4:2251626-2251645 None:intergenic 40.0%
! CTTTGAAAAGCAGAAGAGCA+AGG - chr2.4:2249677-2249696 MS.gene89068:intron 40.0%
! GAAAACTCGGTGATTACTTG+AGG - chr2.4:2249728-2249747 MS.gene89068:intron 40.0%
! GAGCCAGAATTTTATAGGAC+GGG + chr2.4:2251264-2251283 None:intergenic 40.0%
! GTCAGAGTGAAAGAGCATAA+TGG + chr2.4:2248795-2248814 None:intergenic 40.0%
! GTCTTCCAGGGAATCAATTT+TGG - chr2.4:2251618-2251637 MS.gene89068:CDS 40.0%
! GTTTGAAGTTCCTAAAGAGG+GGG - chr2.4:2249567-2249586 MS.gene89068:CDS 40.0%
! TTCTGTTTCTTGCAGGTTGT+TGG - chr2.4:2251806-2251825 MS.gene89068:intron 40.0%
!! AAAAGTGCCAAGGAAAGCAT+AGG - chr2.4:2251062-2251081 MS.gene89068:intron 40.0%
!! ATTCCTTTTGTTGTGCCAGT+TGG + chr2.4:2250399-2250418 None:intergenic 40.0%
!! ATTGGTTTGCCTCCTTCAAA+TGG - chr2.4:2250600-2250619 MS.gene89068:CDS 40.0%
!! CAGAACTACTAGCTTTAGTG+AGG - chr2.4:2252522-2252541 MS.gene89068:intron 40.0%
!! CAGGGAATCAATTTTGGGAA+AGG - chr2.4:2251624-2251643 MS.gene89068:CDS 40.0%
!! CGGCAGTGTAAAGGTTTTAA+GGG + chr2.4:2248587-2248606 None:intergenic 40.0%
!! GAATGGTACTGACTCAACAA+AGG + chr2.4:2251847-2251866 None:intergenic 40.0%
!! TGAGCCATCATTAGTGGATT+TGG - chr2.4:2249754-2249773 MS.gene89068:intron 40.0%
!! TGTTGACTTCATGAATGCGT+GGG - chr2.4:2252301-2252320 MS.gene89068:CDS 40.0%
!! TTCCTTTTGTTGTGCCAGTT+GGG + chr2.4:2250398-2250417 None:intergenic 40.0%
!!! GAAGAGAACTCTTTTTGGCT+TGG - chr2.4:2249042-2249061 MS.gene89068:CDS 40.0%
AAAGCAGAAGAGCAAGGTCA+TGG - chr2.4:2249683-2249702 MS.gene89068:intron 45.0%
AAATCGAGATTGCACGTTGC+AGG - chr2.4:2252191-2252210 MS.gene89068:intron 45.0%
AATGTTGGATCCCCCTCTTT+AGG + chr2.4:2249580-2249599 None:intergenic 45.0%
ACTTCATGAATGCGTGGGAT+TGG - chr2.4:2252306-2252325 MS.gene89068:CDS 45.0%
AGAAGGGGTAGGCTTACATT+AGG + chr2.4:2251155-2251174 None:intergenic 45.0%
AGTCTTCTTGGAACTCCAGA+AGG + chr2.4:2250075-2250094 None:intergenic 45.0%
ATAAGAGGATCAGAAGGGGT+AGG + chr2.4:2251166-2251185 None:intergenic 45.0%
ATCCCAACTGGCACAACAAA+AGG - chr2.4:2250393-2250412 MS.gene89068:CDS 45.0%
ATGTTAATCCAACAGGGGCT+TGG + chr2.4:2249101-2249120 None:intergenic 45.0%
CACTAATAGAGGGGAGTTGA+AGG - chr2.4:2252498-2252517 MS.gene89068:intron 45.0%
CAGACTCTTAGTGTGCATAG+GGG + chr2.4:2250640-2250659 None:intergenic 45.0%
CCAGACTCTTAGTGTGCATA+GGG + chr2.4:2250641-2250660 None:intergenic 45.0%
CCGGATCAACTACCATTCAA+AGG + chr2.4:2251030-2251049 None:intergenic 45.0%
CTTCAACTCCCCTCTATTAG+TGG + chr2.4:2252500-2252519 None:intergenic 45.0%
CTTCATGAATGCGTGGGATT+GGG - chr2.4:2252307-2252326 MS.gene89068:CDS 45.0%
GCCACTCCTAGTATTAGAAG+AGG + chr2.4:2248960-2248979 None:intergenic 45.0%
GCTCTACCTGTTATTGCCTT+CGG - chr2.4:2248714-2248733 MS.gene89068:intron 45.0%
GCTTCCGATCACATGTTACA+TGG - chr2.4:2250879-2250898 MS.gene89068:CDS 45.0%
GGACCAATCATTAGCATGGT+TGG - chr2.4:2249922-2249941 MS.gene89068:CDS 45.0%
GGGAACAACATTCCAGCAAT+TGG + chr2.4:2251939-2251958 None:intergenic 45.0%
GGTTCTGCAGAATCATTCAG+TGG - chr2.4:2251352-2251371 MS.gene89068:CDS 45.0%
GTAGTTGATCCGGAGAAAGA+TGG - chr2.4:2251037-2251056 MS.gene89068:intron 45.0%
GTGACATGGATTCCAATTGC+TGG - chr2.4:2251924-2251943 MS.gene89068:intron 45.0%
GTGGGGATACTTTGCTTACA+TGG - chr2.4:2251586-2251605 MS.gene89068:CDS 45.0%
GTTCCAGCCTTAATGATAGC+AGG - chr2.4:2250343-2250362 MS.gene89068:intron 45.0%
GTTTCTTGCAGGTTGTTGGA+AGG - chr2.4:2251810-2251829 MS.gene89068:intron 45.0%
TAAAGAGGGGGATCCAACAT+TGG - chr2.4:2249579-2249598 MS.gene89068:CDS 45.0%
TCATTAGCATGGTTGGATGG+AGG - chr2.4:2249929-2249948 MS.gene89068:CDS 45.0%
TCTGGCTGTTCTCAAGAAAC+AGG - chr2.4:2250656-2250675 MS.gene89068:CDS 45.0%
TGAGGCAGAACTCCATTTGA+AGG + chr2.4:2250615-2250634 None:intergenic 45.0%
TGCCCCGTCCTATAAAATTC+TGG - chr2.4:2251258-2251277 MS.gene89068:intron 45.0%
TGTTAATCCAACAGGGGCTT+GGG + chr2.4:2249100-2249119 None:intergenic 45.0%
TGTTTGATGTCTGTGTCAGC+AGG + chr2.4:2251291-2251310 None:intergenic 45.0%
TTAAGCTCAGGATACCTGGA+AGG + chr2.4:2252096-2252115 None:intergenic 45.0%
TTAGTGTGCATAGGGGATTG+AGG + chr2.4:2250633-2250652 None:intergenic 45.0%
TTGATCCGACAGTCCAAATG+TGG - chr2.4:2249858-2249877 MS.gene89068:intron 45.0%
TTGGACTGTCGGATCAAGAT+CGG + chr2.4:2249855-2249874 None:intergenic 45.0%
! ACCATGCTAATGATTGGTCC+GGG + chr2.4:2249922-2249941 None:intergenic 45.0%
! ACTCATTGCACCTTTGGCTT+GGG - chr2.4:2250092-2250111 MS.gene89068:intron 45.0%
! AGACTACGGAGTACCATTCT+TGG - chr2.4:2250002-2250021 MS.gene89068:intron 45.0%
! AGATGGAAGCTTAAGCACTG+TGG - chr2.4:2248878-2248897 MS.gene89068:intron 45.0%
! AGGATTGCTGGTGAGCTTTT+TGG - chr2.4:2249376-2249395 MS.gene89068:CDS 45.0%
! ATGGCCATTGATAGTCTTCC+AGG - chr2.4:2251605-2251624 MS.gene89068:CDS 45.0%
! ATGGTTTGGACTGAACAGCT+TGG + chr2.4:2252006-2252025 None:intergenic 45.0%
! CTTAAGCACTGTGGAAACAC+TGG - chr2.4:2248887-2248906 MS.gene89068:intron 45.0%
! GCGGCAGTGTAAAGGTTTTA+AGG + chr2.4:2248588-2248607 None:intergenic 45.0%
! GTCAACACATTGGTAGTCCT+TGG + chr2.4:2252288-2252307 None:intergenic 45.0%
! TGGCCATTGATAGTCTTCCA+GGG - chr2.4:2251606-2251625 MS.gene89068:CDS 45.0%
! TGGTTTGGACTGAACAGCTT+GGG + chr2.4:2252005-2252024 None:intergenic 45.0%
!! AAACTTAGTCTTGGAGCACC+AGG + chr2.4:2252065-2252084 None:intergenic 45.0%
!! AGGCTTTGAGCCATCATTAG+TGG - chr2.4:2249748-2249767 MS.gene89068:intron 45.0%
!! GTGTTGACTTCATGAATGCG+TGG - chr2.4:2252300-2252319 MS.gene89068:CDS 45.0%
!! TGGTTTGTTTCGGAGTGACA+TGG - chr2.4:2251910-2251929 MS.gene89068:intron 45.0%
!! TTGGATTTCTGGTCTCACCT+CGG - chr2.4:2248409-2248428 MS.gene89068:intron 45.0%
!!! GAACTCTTTTTGGCTTGGGT+AGG - chr2.4:2249047-2249066 MS.gene89068:CDS 45.0%
!!! TCTTTTTGGCTTGGGTAGGA+TGG - chr2.4:2249051-2249070 MS.gene89068:CDS 45.0%
AACAGGGGCTTGGGTTATGT+AGG + chr2.4:2249091-2249110 None:intergenic 50.0%
AATCTGGACAGTCCGAGATG+TGG + chr2.4:2249786-2249805 None:intergenic 50.0%
ACCCGGACCAATCATTAGCA+TGG - chr2.4:2249918-2249937 MS.gene89068:CDS 50.0%
ACCTCATGACTGCACACAGT+TGG + chr2.4:2249884-2249903 None:intergenic 50.0%
ACGGTCTGCAATTGCAGTTG+TGG + chr2.4:2248610-2248629 None:intergenic 50.0%
AGACGTGTGAATGTCGTGTC+CGG + chr2.4:2251758-2251777 None:intergenic 50.0%
AGCCCTGCTATCATTAAGGC+TGG + chr2.4:2250349-2250368 None:intergenic 50.0%
CCAGTTGGGATGCAACACTA+TGG + chr2.4:2250384-2250403 None:intergenic 50.0%
CCATAGTGTTGCATCCCAAC+TGG - chr2.4:2250381-2250400 MS.gene89068:CDS 50.0%
CCCTATGCACACTAAGAGTC+TGG - chr2.4:2250638-2250657 MS.gene89068:CDS 50.0%
CGCTCACGCAATCAACACAT+TGG - chr2.4:2252160-2252179 MS.gene89068:intron 50.0%
CTGGCTTCTACAGCCATTTG+TGG - chr2.4:2248906-2248925 MS.gene89068:intron 50.0%
GACTCATTGCACCTTTGGCT+TGG - chr2.4:2250091-2250110 MS.gene89068:intron 50.0%
GAGCGTGAAATCACGACTGT+GGG + chr2.4:2252145-2252164 None:intergenic 50.0%
GATGCAGATTCCCAAGCCAA+AGG + chr2.4:2250105-2250124 None:intergenic 50.0%
GATTCTGCAGAACCATGCTC+AGG + chr2.4:2251346-2251365 None:intergenic 50.0%
GCCAGACTCTTAGTGTGCAT+AGG + chr2.4:2250642-2250661 None:intergenic 50.0%
GGATATGGGGAAGGTTTCTC+TGG - chr2.4:2250300-2250319 MS.gene89068:intron 50.0%
GGCAGAACTCCATTTGAAGG+AGG + chr2.4:2250612-2250631 None:intergenic 50.0%
GGTAGTCCTTGGATCGAGTT+CGG + chr2.4:2252277-2252296 None:intergenic 50.0%
GGTTTGGACTGAACAGCTTG+GGG + chr2.4:2252004-2252023 None:intergenic 50.0%
GTCTGCAATTGCAGTTGTGG+CGG + chr2.4:2248607-2248626 None:intergenic 50.0%
GTTGGCCACATTTGGACTGT+CGG + chr2.4:2249866-2249885 None:intergenic 50.0%
TACATAACCCAAGCCCCTGT+TGG - chr2.4:2249090-2249109 MS.gene89068:CDS 50.0%
TACCATTCTTGGTCGTGGTG+TGG - chr2.4:2250013-2250032 MS.gene89068:intron 50.0%
TCTACTGCAGGATATGGGGA+AGG - chr2.4:2250291-2250310 MS.gene89068:intron 50.0%
TGAGCGTGAAATCACGACTG+TGG + chr2.4:2252146-2252165 None:intergenic 50.0%
TGCACACAGTTGGCCACATT+TGG + chr2.4:2249874-2249893 None:intergenic 50.0%
! CATGGTTTGAAACTGCGGTG+CGG - chr2.4:2248505-2248524 MS.gene89068:CDS 50.0%
!! TGGATTTCTGGTCTCACCTC+GGG - chr2.4:2248410-2248429 MS.gene89068:intron 50.0%
AGCTCAGTAGGGACACAGGT+TGG - chr2.4:2248742-2248761 MS.gene89068:intron 55.0%
CAGTTGTGGCGGCAGTGTAA+AGG + chr2.4:2248596-2248615 None:intergenic 55.0%
GCCAACTGTGTGCAGTCATG+AGG - chr2.4:2249880-2249899 MS.gene89068:CDS 55.0%
GGACGGTGTAGAAAGCAAGC+AGG + chr2.4:2252256-2252275 None:intergenic 55.0%
GGTTGTGACTGCACACAACC+CGG - chr2.4:2249901-2249920 MS.gene89068:CDS 55.0%
GTCCACACCACGACCAAGAA+TGG + chr2.4:2250018-2250037 None:intergenic 55.0%
GTCCTTGGATCGAGTTCGGA+CGG + chr2.4:2252273-2252292 None:intergenic 55.0%
! CGGAGTACCATTCTTGGTCG+TGG - chr2.4:2250008-2250027 MS.gene89068:intron 55.0%
AGAAGCTTACCCGGTTCCCG+AGG + chr2.4:2248429-2248448 None:intergenic 60.0%
CACCGTCCGAACTCGATCCA+AGG - chr2.4:2252268-2252287 MS.gene89068:CDS 60.0%
TCTGGTCTCACCTCGGGAAC+CGG - chr2.4:2248416-2248435 MS.gene89068:intron 60.0%
TGCGCGCCGAAGGCAATAAC+AGG + chr2.4:2248723-2248742 None:intergenic 60.0%
CTGGTCTCACCTCGGGAACC+GGG - chr2.4:2248417-2248436 MS.gene89068:intron 65.0%
CTTCGGCGCGCAGCTCAGTA+GGG - chr2.4:2248731-2248750 MS.gene89068:intron 65.0%
GCGCAGCTCAGTAGGGACAC+AGG - chr2.4:2248738-2248757 MS.gene89068:intron 65.0%
CCTACTGAGCTGCGCGCCGA+AGG + chr2.4:2248733-2248752 None:intergenic 70.0%
CCTTCGGCGCGCAGCTCAGT+AGG - chr2.4:2248730-2248749 MS.gene89068:intron 70.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 2248335 2252689 2248335 ID=MS.gene89068
chr2.4 mRNA 2248335 2252689 2248335 ID=MS.gene89068.t1;Parent=MS.gene89068
chr2.4 exon 2252586 2252689 2252586 ID=MS.gene89068.t1.exon1;Parent=MS.gene89068.t1
chr2.4 CDS 2252586 2252689 2252586 ID=cds.MS.gene89068.t1;Parent=MS.gene89068.t1
chr2.4 exon 2252265 2252347 2252265 ID=MS.gene89068.t1.exon2;Parent=MS.gene89068.t1
chr2.4 CDS 2252265 2252347 2252265 ID=cds.MS.gene89068.t1;Parent=MS.gene89068.t1
chr2.4 exon 2251952 2252144 2251952 ID=MS.gene89068.t1.exon3;Parent=MS.gene89068.t1
chr2.4 CDS 2251952 2252144 2251952 ID=cds.MS.gene89068.t1;Parent=MS.gene89068.t1
chr2.4 exon 2251586 2251724 2251586 ID=MS.gene89068.t1.exon4;Parent=MS.gene89068.t1
chr2.4 CDS 2251586 2251724 2251586 ID=cds.MS.gene89068.t1;Parent=MS.gene89068.t1
chr2.4 exon 2251306 2251471 2251306 ID=MS.gene89068.t1.exon5;Parent=MS.gene89068.t1
chr2.4 CDS 2251306 2251471 2251306 ID=cds.MS.gene89068.t1;Parent=MS.gene89068.t1
chr2.4 exon 2250875 2251044 2250875 ID=MS.gene89068.t1.exon6;Parent=MS.gene89068.t1
chr2.4 CDS 2250875 2251044 2250875 ID=cds.MS.gene89068.t1;Parent=MS.gene89068.t1
chr2.4 exon 2250550 2250723 2250550 ID=MS.gene89068.t1.exon7;Parent=MS.gene89068.t1
chr2.4 CDS 2250550 2250723 2250550 ID=cds.MS.gene89068.t1;Parent=MS.gene89068.t1
chr2.4 exon 2250347 2250442 2250347 ID=MS.gene89068.t1.exon8;Parent=MS.gene89068.t1
chr2.4 CDS 2250347 2250442 2250347 ID=cds.MS.gene89068.t1;Parent=MS.gene89068.t1
chr2.4 exon 2249867 2249983 2249867 ID=MS.gene89068.t1.exon9;Parent=MS.gene89068.t1
chr2.4 CDS 2249867 2249983 2249867 ID=cds.MS.gene89068.t1;Parent=MS.gene89068.t1
chr2.4 exon 2249340 2249662 2249340 ID=MS.gene89068.t1.exon10;Parent=MS.gene89068.t1
chr2.4 CDS 2249340 2249662 2249340 ID=cds.MS.gene89068.t1;Parent=MS.gene89068.t1
chr2.4 exon 2248924 2249203 2248924 ID=MS.gene89068.t1.exon11;Parent=MS.gene89068.t1
chr2.4 CDS 2248924 2249203 2248924 ID=cds.MS.gene89068.t1;Parent=MS.gene89068.t1
chr2.4 exon 2248466 2248591 2248466 ID=MS.gene89068.t1.exon12;Parent=MS.gene89068.t1
chr2.4 CDS 2248466 2248591 2248466 ID=cds.MS.gene89068.t1;Parent=MS.gene89068.t1
chr2.4 exon 2248335 2248364 2248335 ID=MS.gene89068.t1.exon13;Parent=MS.gene89068.t1
chr2.4 CDS 2248335 2248364 2248335 ID=cds.MS.gene89068.t1;Parent=MS.gene89068.t1
Gene Sequence

>MS.gene89068

ATGAAGAACTTTAAAACACCTTTCAAGGGTATTGTAGATGATTTTAGGGGAAGAGCAGTACACTATAAAGATGATTGGATTTCTGGTCTCACCTCGGGAACCGGGTAAGCTTCTATTACATGTGGATTTATTCATGTTTGTATGACCAAAAAAATTCATGCAAGTATGATCATGGTTTGAAACTGCGGTGCGGTTGCAGTTACGTTGAGAATTTTAATATTGCGACGTGGGCAAATGCCGTTGTAAAGACCCTTAAAACCTTTACACTGCCGCCACAACTGCAATTGCAGACCGTGATTTAGAACATGCAATGTAACGATAATAATACTAATGTAATGACAGGATATTGGCACCGACTATGTATATTTTCTTCGCTTCTGCTCTACCTGTTATTGCCTTCGGCGCGCAGCTCAGTAGGGACACAGGTTGGTTCATGATCTTCTTCATTCTTTCTTGACCATTATGCTCTTTCACTCTGACCTATACACTCTATGCATAACTCTTTTGGTATTAAGATTGAACCATTTCTTGTTTGTATTTTGTAGATGGAAGCTTAAGCACTGTGGAAACACTGGCTTCTACAGCCATTTGTGGAATCATACACTCCATTTTTGGTGGACAACCTCTTCTAATACTAGGAGTGGCAGAACCCACTATCCTTATGTACACATATTTGTACAATTATGCCAAAAATAAGGAAGGTTTGGGAAGAGAACTCTTTTTGGCTTGGGTAGGATGGTAAGAATAACATATCCTACATAACCCAAGCCCCTGTTGGATTAACATATAAGCTATTTCTGTAGCAAAAGATAAAATAAAGTCAAATTATGTTCATATAATTAGCTATAAGTTGTTTTCATAAGCTCTCCCAAGTGCATATGTTAGATAAACTCAATTAAGTCAATCAAAACAGGCTTGAAGATCATGTTTTAATCATTGTCTAATGGATGTTATTAACATTTCAGGGTTTGTGTGTGGACTGCTCTATTGCTATTTCTTTTAGCAATATTCAATGCTGCCATTATCATCAATAGATTTACAAGGATTGCTGGTGAGCTTTTTGGCATGTTGATTACAGTCTTATTCATTCAAGAAGCTATCAAGGTTAGTTTCTGACATATTAGTTTGTTTGTGGTGGTATCAACTATCAAATGAAACATGAATTTGGCATAACACATAAGAAAAAGACTTTGATATATTATTGTATTGAATCTTTAGGGAATGGTAAGTGAGTTTGAAGTTCCTAAAGAGGGGGATCCAACATTGGATAAATACCAATTTCATTGGTTGTATGCAAATGGATTGCTAGGAATTATATTTACATTTGGCCTTCTCTATACTTCTTTGAAAAGCAGAAGAGCAAGGTCATGGTTATATGGAACAGGTTTGTCGAGAAAACTCGGTGATTACTTGAGGCTTTGAGCCATCATTAGTGGATTTGGATTCAGCCACATCTCGGACTGTCCAGATTTTAATTTCTTTTAAATTTAAAATATCAAACTTGAAGTATCGACTGTCCGATCTTGATCCGACAGTCCAAATGTGGCCAACTGTGTGCAGTCATGAGGTTGTGACTGCACACAACCCGGACCAATCATTAGCATGGTTGGATGGAGGAAACTGACATTGTTTGTTTATTGAGCAGGGTGGTTAAGAAGTTTCATTGCAGACTACGGAGTACCATTCTTGGTCGTGGTGTGGACAGCTTTATCATTTACAGTAGTAGCAAATAAAGTACCTTCTGGAGTTCCAAGAAGACTCATTGCACCTTTGGCTTGGGAATCTGCATCATTACATCACTGGACAGTAATCAAGGTAAAACAACTTATAGCATATTGAAAACCATTGGACTTTGTTATATCTTTTGTTTGATAAATATCTTACACATAGACATAAGCACTTTAATTAAGTTGTGTATCCAAACATGACATGGTTTTGGAAGTTACTGACATAATTTCTACTGCAGGATATGGGGAAGGTTTCTCTGGAACATATTTTTGCTGCTTTTGTTCCAGCCTTAATGATAGCAGGGCTTTACTTCTTTGACCATAGTGTTGCATCCCAACTGGCACAACAAAAGGAATTCAATCTCAAGAAACCTTCGGCATATCACTATGATATATTGTTACTAGGATTCATGGTATATATTTATATTTTATATATGATATCTTGTATGGATTTGTTTAATTGTCACTCACATTAATGATACCAACAAAACTAATGCTTTTCTTTGAATCAAACTTTTAGACTTTGCTTTGCGGACTAATTGGTTTGCCTCCTTCAAATGGAGTTCTGCCTCAATCCCCTATGCACACTAAGAGTCTGGCTGTTCTCAAGAAACAGGTGTGTAAATGAGTATTGATAATTGTAATTTTGTATTGAGTAGCAAGATTGAATTTGATATTAGGGGTTTGTTTGGATTGACTTATTTGAGCTTATATATTGGTATAAGCACTAGTGAGACAGTTTGAGAGAGATTATGAAAACAAATTATGCCATACAAATAAGCTGTTTTCTGCTTACTTTCATAAGCTCTCAAGGATAGCTTCCGATCACATGTTACATGGTATTTGAAAATAGTTTGACTTAATCTTTTTTTTTTATAGATAAAATTTATATGATAAGTGATTATGCTATAAACACTTAATTAAGTTGTTTATATACACAAAGCCTGAGTATGGTGATTCATTTTCCTTTGAATGGTAGTTGATCCGGAGAAAGATGGTTAAAAGTGCCAAGGAAAGCATAGGGAAGAAAGCTAGCAACTCTGAAATATATGGAACAATGCAAGCAGTGTTTATAGAAATGGATAATGATCCTAATGTAAGCCTACCCCTTCTGATCCTCTTATCCTTTTGCTAATAAATATATTCGGCAATTGTTATATGTTTTTTATTATTAATTCATATTATATTTTGATCTTTGCCCCGTCCTATAAAATTCTGGCTCTGAACCTGCTGACACAGACATCAAACACGACACCAATAATAACTAAATTACTAATTGTTCCTGAGCATGGTTCTGCAGAATCATTCAGTGGTAAAAGAACTAGAGGATTTGAAAGATTTTGTCCTAAATGGTGAAGATAAAGGAGAGAACAATAAGAGCACATTTGATCCTGAGAAACACATTGATACATATTTGCCTGTAAGAGTAAAGGAGCAAAGAGTGAGCAACCTTTTACAATCACTCTTTGTTGGAGCAGCAGTGTTTGCCATGCCTGCCATAAAAATGATACCAACTTCAGTATTGTGGGGATACTTTGCTTACATGGCCATTGATAGTCTTCCAGGGAATCAATTTTGGGAAAGGATACTGCTTCTTTTTGTAAGACCTAGTAGATGGTACAAGTAAGTGAAAGTTACTTTGATTTCACCATTTTAACAAAATATACATGAAGCATTGAAATAAACACTAACACCGGACACGACATTCACACGTCTTTATTCTGAAGTGTCAGTTGTCATTGATTTCTGTTTCTTGCAGGTTGTTGGAAGGTGATCATGCTTCCTTTGTTGAGTCAGTACCATTCAAACATATAGTATTGTTTACACTCTTCCAATGTGTGTATTTCTTGGTTTGTTTCGGAGTGACATGGATTCCAATTGCTGGAATGTTGTTCCCTTTGCCATTCTTTTTGCTGATCACATTGAGGCAATATATACTCCCCAAGCTGTTCAGTCCAAACCATCTTATGGAACTAGATGCAGCTGAATATGAAGAAATACCTGGTGCTCCAAGACTAAGTTTCAATATATCCTTCCAGGTATCCTGAGCTTAATTTTGTCATTTTTTTTATTTGCATTGCCCACAGTCGTGATTTCACGCTCACGCAATCAACACATTGGTAGCCATTAAATCGAGATTGCACGTTGCAGGTTTCAAGCTCGATATTTTAGAGTAAAAAAAAAATCAAAACCTGCTTGCTTTCTACACCGTCCGAACTCGATCCAAGGACTACCAATGTGTTGACTTCATGAATGCGTGGGATTGGGATTGCATGCAAACCAAAGCCTTTTCAATTATGATATTTCATCTCAATTATATTTTACACAATACTCTAGGATATCAAAGAGTTCTATACTTTTTTTGTAACAGGAGGTTGAATCACCTAAAGTTGGATCAAAGGAAATAGGTAATTCTGAAATATTAGATGAGTTAACCACTAATAGAGGGGAGTTGAAGGTCAGAACTACTAGCTTTAGTGAGGAAAGAAATAATCAGGTAACAGAATTCAAATGCTGTTTCTTTGAATGAATTTGAGTTAATTACTTTTGTTCTTTCTCTAAAAAAAATGCATTGTTTTCAATGATGAGTTTTTGCAGGTTTATCCTCATGAAATTGATTCAAACTAG

Protein sequence

>MS.gene89068.t1

MKNFKTPFKGIVDDFRGRAVHYKDDWISGLTSGTGILAPTMYIFFASALPVIAFGAQLSRDTDGSLSTVETLASTAICGIIHSIFGGQPLLILGVAEPTILMYTYLYNYAKNKEGLGRELFLAWVGWVCVWTALLLFLLAIFNAAIIINRFTRIAGELFGMLITVLFIQEAIKGMVSEFEVPKEGDPTLDKYQFHWLYANGLLGIIFTFGLLYTSLKSRRARSWLYGTGWLRSFIADYGVPFLVVVWTALSFTVVANKVPSGVPRRLIAPLAWESASLHHWTVIKDMGKVSLEHIFAAFVPALMIAGLYFFDHSVASQLAQQKEFNLKKPSAYHYDILLLGFMTLLCGLIGLPPSNGVLPQSPMHTKSLAVLKKQLIRRKMVKSAKESIGKKASNSEIYGTMQAVFIEMDNDPNNHSVVKELEDLKDFVLNGEDKGENNKSTFDPEKHIDTYLPVRVKEQRVSNLLQSLFVGAAVFAMPAIKMIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVRPSRWYKLLEGDHASFVESVPFKHIVLFTLFQCVYFLVCFGVTWIPIAGMLFPLPFFLLITLRQYILPKLFSPNHLMELDAAEYEEIPGAPRLSFNISFQEVESPKVGSKEIGNSEILDELTTNRGELKVRTTSFSEERNNQVYPHEIDSN