Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52129.t1 | XP_003607217.2 | 98.2 | 989 | 18 | 0 | 1 | 989 | 1 | 989 | 0.00E+00 | 1937.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52129.t1 | P36428 | 76.8 | 957 | 217 | 3 | 38 | 989 | 47 | 1003 | 0.0e+00 | 1499.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52129.t1 | A0A396IBC8 | 98.2 | 989 | 18 | 0 | 1 | 989 | 1 | 989 | 0.0e+00 | 1937.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057868 | MS.gene52129 | 0.860375 | 2.16E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68122 | MS.gene52129 | PPI |
| MS.gene68723 | MS.gene52129 | PPI |
| MS.gene063074 | MS.gene52129 | PPI |
| MS.gene014188 | MS.gene52129 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52129.t1 | MTR_4g074640 | 98.421 | 950 | 15 | 0 | 40 | 989 | 1 | 950 | 0.0 | 1933 |
| MS.gene52129.t1 | MTR_4g074670 | 85.745 | 463 | 66 | 0 | 40 | 502 | 1 | 463 | 0.0 | 857 |
| MS.gene52129.t1 | MTR_4g074670 | 81.579 | 190 | 35 | 0 | 799 | 988 | 445 | 634 | 1.44e-79 | 272 |
| MS.gene52129.t1 | MTR_4g074670 | 83.630 | 281 | 46 | 0 | 222 | 502 | 1 | 281 | 1.53e-167 | 498 |
| MS.gene52129.t1 | MTR_4g074670 | 81.579 | 190 | 35 | 0 | 799 | 988 | 263 | 452 | 4.93e-82 | 273 |
| MS.gene52129.t1 | MTR_3g118360 | 34.593 | 847 | 458 | 20 | 55 | 866 | 86 | 871 | 5.94e-134 | 425 |
| MS.gene52129.t1 | MTR_3g118360 | 34.940 | 830 | 444 | 20 | 55 | 849 | 86 | 854 | 2.33e-133 | 423 |
| MS.gene52129.t1 | MTR_3g118360 | 34.940 | 830 | 444 | 20 | 55 | 849 | 86 | 854 | 7.56e-133 | 425 |
| MS.gene52129.t1 | MTR_3g118360 | 32.633 | 619 | 341 | 15 | 264 | 849 | 1 | 576 | 2.22e-72 | 254 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52129.t1 | AT1G50200 | 76.803 | 957 | 217 | 3 | 38 | 989 | 47 | 1003 | 0.0 | 1493 |
| MS.gene52129.t1 | AT1G50200 | 76.166 | 965 | 217 | 4 | 38 | 989 | 47 | 1011 | 0.0 | 1487 |
| MS.gene52129.t1 | AT5G22800 | 35.913 | 827 | 430 | 22 | 55 | 838 | 108 | 877 | 2.21e-138 | 441 |
| MS.gene52129.t1 | AT5G22800 | 33.652 | 942 | 497 | 26 | 55 | 955 | 83 | 937 | 2.41e-138 | 440 |
Find 239 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCATTTATGCCACATATTT+TGG | 0.088781 | 4.1:-29369340 | MS.gene52129:CDS |
| GTTCATAACGTTCAAGTTTA+TGG | 0.109288 | 4.1:-29360832 | MS.gene52129:CDS |
| CCTGGACGCGTTCTTCCTTT+TGG | 0.197824 | 4.1:-29369250 | MS.gene52129:CDS |
| GAAGAACGATAGATCCTTTC+TGG | 0.214827 | 4.1:+29360309 | None:intergenic |
| ACTGGTGCTCGGCCATATTC+TGG | 0.216626 | 4.1:-29365636 | MS.gene52129:CDS |
| CACCAGCTCGAATGCACTTT+TGG | 0.230089 | 4.1:+29370171 | None:intergenic |
| ATATCTCTAGCCTCAGTATC+AGG | 0.242247 | 4.1:+29369292 | None:intergenic |
| ATTTCAAATTTGCTTGGTTC+AGG | 0.247448 | 4.1:-29362902 | MS.gene52129:CDS |
| AACAGCTGTTGGACATGTTC+AGG | 0.275058 | 4.1:-29364506 | MS.gene52129:CDS |
| GGTCCAACTTTCCCAGAATA+TGG | 0.280236 | 4.1:+29365624 | None:intergenic |
| ATGGAACCTCGTCTTTATTC+AGG | 0.291356 | 4.1:-29367136 | MS.gene52129:intron |
| CAACCGGGATGCTGCATCTT+TGG | 0.297241 | 4.1:-29367190 | MS.gene52129:CDS |
| ATCAAGAACTGCTCAAAATA+AGG | 0.306307 | 4.1:-29363127 | MS.gene52129:intron |
| AGTTTGCTCAAGGCGGTATT+GGG | 0.311900 | 4.1:+29370212 | None:intergenic |
| TGAGCAAATTCAAGCTGAAT+TGG | 0.318288 | 4.1:-29360130 | MS.gene52129:CDS |
| CCAGTGTCAACATGCTTTGC+AGG | 0.319269 | 4.1:+29366814 | None:intergenic |
| ATGTATGATTAGGGGCTATA+AGG | 0.328822 | 4.1:+29360475 | None:intergenic |
| CCTCTCGTGTGTTTGAGATA+TGG | 0.330074 | 4.1:+29359766 | None:intergenic |
| TCTTTGAGATGTTAGGTAAC+TGG | 0.336497 | 4.1:-29370097 | MS.gene52129:CDS |
| ATCCTACATGCCTCGAGATA+TGG | 0.336552 | 4.1:-29367155 | MS.gene52129:CDS |
| TGGTGATGTTGGTGTAATTC+TGG | 0.341373 | 4.1:-29362309 | MS.gene52129:CDS |
| CTGTTGATGCTGATTCATTA+AGG | 0.342518 | 4.1:-29360173 | MS.gene52129:CDS |
| GACCAAGATTGCCCTACTTC+AGG | 0.355901 | 4.1:-29358390 | MS.gene52129:intron |
| TTGTCTCACCACAGTTCAAC+AGG | 0.362280 | 4.1:-29366864 | MS.gene52129:intron |
| GGCGGAGGAGACGGCGGAGG+TGG | 0.364467 | 4.1:+29370903 | None:intergenic |
| CTGTCATTTGCCATTGCTGA+TGG | 0.364745 | 4.1:-29365543 | MS.gene52129:CDS |
| AAGAGAAGAATCATGTATAC+TGG | 0.368267 | 4.1:-29370807 | MS.gene52129:CDS |
| TGCTTCTGATGCAATGAAAA+TGG | 0.378251 | 4.1:-29359667 | MS.gene52129:CDS |
| TCGTGCTTCACATTGGTAAT+GGG | 0.382910 | 4.1:-29360804 | MS.gene52129:CDS |
| CACACCTTCTTTGAGATGTT+AGG | 0.392733 | 4.1:-29370104 | MS.gene52129:CDS |
| AGAATGGCTGAGTAATGCTT+TGG | 0.394510 | 4.1:-29357771 | MS.gene52129:CDS |
| GAATGGCTGAGTAATGCTTT+GGG | 0.404215 | 4.1:-29357770 | MS.gene52129:CDS |
| CCAACTGACACAACTCTAAC+CGG | 0.410379 | 4.1:+29359950 | None:intergenic |
| TGCATATCTCACGTTAATGT+TGG | 0.411098 | 4.1:-29358121 | MS.gene52129:CDS |
| AACAACAGGAAGTGCACATT+AGG | 0.411109 | 4.1:-29364717 | MS.gene52129:CDS |
| TACCTGAAGTAGGGCAATCT+TGG | 0.411861 | 4.1:+29358388 | None:intergenic |
| CAAGAGGAAGAGGAAAGTTT+CGG | 0.412951 | 4.1:-29364685 | MS.gene52129:CDS |
| GAGTTTGCTCAAGGCGGTAT+TGG | 0.413067 | 4.1:+29370211 | None:intergenic |
| TTCGTGCTTCACATTGGTAA+TGG | 0.413069 | 4.1:-29360805 | MS.gene52129:CDS |
| CTCTCGTGTGTTTGAGATAT+GGG | 0.417253 | 4.1:+29359767 | None:intergenic |
| ATGTGTGTGCATGTATGATT+AGG | 0.419119 | 4.1:+29360465 | None:intergenic |
| GCAAAATTTAAAACAGCTGT+TGG | 0.419267 | 4.1:-29364517 | MS.gene52129:CDS |
| CTATGCTGAGCAAGGTGGTC+AGG | 0.422720 | 4.1:-29362273 | MS.gene52129:intron |
| ATAGGTAGCGTTTGAGTTGT+GGG | 0.425984 | 4.1:-29363343 | MS.gene52129:intron |
| TGTATGATTAGGGGCTATAA+GGG | 0.429923 | 4.1:+29360476 | None:intergenic |
| TTTGAGTTGTGGGATACATA+TGG | 0.434986 | 4.1:-29363333 | MS.gene52129:CDS |
| CTTAATGAATCAGCATCAAC+AGG | 0.436466 | 4.1:+29360174 | None:intergenic |
| ATTTCAGCTTTCTTAGCTGC+AGG | 0.437519 | 4.1:+29358416 | None:intergenic |
| TCAAAGAAGAAGCCATTAGC+TGG | 0.439122 | 4.1:-29370058 | MS.gene52129:CDS |
| GATGAAGCGGCTAAGCTAGA+AGG | 0.439209 | 4.1:-29359621 | MS.gene52129:CDS |
| TTTCGGCAGAACCTTAGTTA+AGG | 0.441839 | 4.1:-29364668 | MS.gene52129:intron |
| ATTGAAGGGGACGACGGGAC+TGG | 0.442727 | 4.1:+29370780 | None:intergenic |
| GACACAACTCTAACCGGATC+AGG | 0.445491 | 4.1:+29359956 | None:intergenic |
| ATACTGAGGCTAGAGATATA+TGG | 0.447714 | 4.1:-29369288 | MS.gene52129:CDS |
| ATAAAATTGACATGGCATAC+AGG | 0.448571 | 4.1:-29365590 | MS.gene52129:CDS |
| TACTCTCTAGTTCAATTTCA+CGG | 0.450028 | 4.1:+29356840 | None:intergenic |
| ATGTTAGGTAACTGGTCCTT+TGG | 0.450932 | 4.1:-29370089 | MS.gene52129:CDS |
| TAACTCCCATGCCCAGCTAA+TGG | 0.454328 | 4.1:+29370046 | None:intergenic |
| CATCATATAATACCTGAAGT+AGG | 0.455474 | 4.1:+29358378 | None:intergenic |
| GCCGTCTCCTCCGCCATGAC+AGG | 0.455538 | 4.1:-29370895 | MS.gene52129:CDS |
| TCCTGTCATGGCGGAGGAGA+CGG | 0.457461 | 4.1:+29370894 | None:intergenic |
| TTCACCTGTGTGAGGTCCAA+TGG | 0.463460 | 4.1:+29363306 | None:intergenic |
| AGAAGGAAGTTTGCTGGAAG+AGG | 0.463523 | 4.1:-29359604 | MS.gene52129:intron |
| GAGGAGAGTAGGGTCATTGA+AGG | 0.463658 | 4.1:+29370765 | None:intergenic |
| GTCAACATGCTTTGCAGGCA+GGG | 0.466153 | 4.1:+29366819 | None:intergenic |
| GAATGTGATTCAAGAGGAAG+AGG | 0.466985 | 4.1:-29364695 | MS.gene52129:CDS |
| CTGGTGCTCGGCCATATTCT+GGG | 0.468254 | 4.1:-29365635 | MS.gene52129:CDS |
| ATGATAATTTCAAATTTGCT+TGG | 0.470436 | 4.1:-29362908 | MS.gene52129:CDS |
| GTGCCGGAGAAAGGAGATAA+AGG | 0.472153 | 4.1:-29357809 | MS.gene52129:CDS |
| GGAAAAGGAGGTCTTGCAAC+GGG | 0.472528 | 4.1:-29357722 | MS.gene52129:CDS |
| TTTCAAATTTGCTTGGTTCA+GGG | 0.472762 | 4.1:-29362901 | MS.gene52129:intron |
| GGGAGATGTGGTAAAGGAAA+AGG | 0.476017 | 4.1:-29357737 | MS.gene52129:CDS |
| TGCCGATGCCAAGCGTATCA+AGG | 0.478205 | 4.1:-29360082 | MS.gene52129:CDS |
| CGGCCATATTCTGGGAAAGT+TGG | 0.482423 | 4.1:-29365627 | MS.gene52129:CDS |
| TTTCCCCGAGCTAAAACAAC+AGG | 0.483670 | 4.1:-29364731 | MS.gene52129:CDS |
| GCATATCTCACGTTAATGTT+GGG | 0.483698 | 4.1:-29358120 | MS.gene52129:CDS |
| AATTTGAAATTATCATCTGT+TGG | 0.486165 | 4.1:+29362915 | None:intergenic |
| AATGTAGGTCTATCCTGATC+CGG | 0.487244 | 4.1:-29359969 | MS.gene52129:intron |
| ATGCTTTGGGGCCACTGAAA+GGG | 0.487479 | 4.1:-29357757 | MS.gene52129:CDS |
| AAATGTTGTGGCAAATGTGC+TGG | 0.487583 | 4.1:-29364761 | MS.gene52129:CDS |
| TGTCAACATGCTTTGCAGGC+AGG | 0.488357 | 4.1:+29366818 | None:intergenic |
| TAAGCTAGAAGGAAGTTTGC+TGG | 0.488518 | 4.1:-29359610 | MS.gene52129:CDS |
| TGTGTGTGCATGTATGATTA+GGG | 0.489098 | 4.1:+29360466 | None:intergenic |
| TATAGGTAGCGTTTGAGTTG+TGG | 0.493113 | 4.1:-29363344 | MS.gene52129:intron |
| TGTAGTGTGTGCTGGGGTGC+CGG | 0.494475 | 4.1:-29357825 | MS.gene52129:CDS |
| TTACCTTTATCTCCTTTCTC+CGG | 0.495540 | 4.1:+29357806 | None:intergenic |
| AAACATACTTTACATCCAAA+AGG | 0.496267 | 4.1:+29369235 | None:intergenic |
| TTGTGACAGCTGTTATTCTA+CGG | 0.496737 | 4.1:+29359697 | None:intergenic |
| CAACTTCCTCTGCAGTATAG+AGG | 0.498143 | 4.1:+29366771 | None:intergenic |
| TGTCATTTGCCATTGCTGAT+GGG | 0.498811 | 4.1:-29365542 | MS.gene52129:CDS |
| GCTGAGGAGGGAATTGCTAA+AGG | 0.500043 | 4.1:-29359723 | MS.gene52129:CDS |
| ATTGCTGATGGGTCTCGTCC+TGG | 0.500105 | 4.1:-29365531 | MS.gene52129:intron |
| AGCTGAATAGCATCGAAGAT+AGG | 0.503102 | 4.1:+29366721 | None:intergenic |
| TGACGAATGCAGGAAGTACT+TGG | 0.505300 | 4.1:-29360344 | MS.gene52129:intron |
| TGTAACACATAACAGGCAAC+TGG | 0.505452 | 4.1:-29365654 | MS.gene52129:intron |
| CATGGCGGAGGAGACGGCGG+AGG | 0.507042 | 4.1:+29370900 | None:intergenic |
| GTATACTCCGTCGAGCTGTT+CGG | 0.508490 | 4.1:-29365094 | MS.gene52129:CDS |
| GCGTTGGCGAAGAGGAGAGT+AGG | 0.508909 | 4.1:+29370754 | None:intergenic |
| GGGTTGTTGCAGATCACATC+AGG | 0.509762 | 4.1:-29365569 | MS.gene52129:CDS |
| GTCGAGCTGTTCGGTATGGT+CGG | 0.509843 | 4.1:-29365085 | MS.gene52129:CDS |
| TCACCTGTGTGAGGTCCAAT+GGG | 0.511378 | 4.1:+29363307 | None:intergenic |
| GTATGGTCGGGAAGTGCTAA+AGG | 0.513822 | 4.1:-29365072 | MS.gene52129:CDS |
| TGTGCTGGGGTGCCGGAGAA+AGG | 0.514670 | 4.1:-29357818 | MS.gene52129:CDS |
| TGTTACTATCAGCAAGCTGG+TGG | 0.517907 | 4.1:-29362993 | MS.gene52129:intron |
| GAGAGAGAAGCTACCGGCGT+TGG | 0.518104 | 4.1:+29370738 | None:intergenic |
| AACAAAGCTGTAGTGTGTGC+TGG | 0.518252 | 4.1:-29357833 | MS.gene52129:CDS |
| GGGTCATTGAAGGGGACGAC+GGG | 0.518747 | 4.1:+29370775 | None:intergenic |
| GTGGTAAAAGCAATATATAC+TGG | 0.521169 | 4.1:-29362362 | MS.gene52129:CDS |
| AGGAGGTCTTGCAACGGGAC+AGG | 0.521507 | 4.1:-29357717 | MS.gene52129:intron |
| ACAGCTGTTGGACATGTTCA+GGG | 0.521612 | 4.1:-29364505 | MS.gene52129:CDS |
| CTCCGTCGAGCTGTTCGGTA+TGG | 0.522500 | 4.1:-29365089 | MS.gene52129:CDS |
| GTCTATCCTGACCTTAACTA+AGG | 0.523455 | 4.1:+29364657 | None:intergenic |
| GTATCTCTGACGCGCTTCGC+CGG | 0.526015 | 4.1:+29370847 | None:intergenic |
| GAAAGGAGATAAAGGTAAGC+TGG | 0.527245 | 4.1:-29357801 | MS.gene52129:CDS |
| ACCCTTGATACGCTTGGCAT+CGG | 0.527787 | 4.1:+29360080 | None:intergenic |
| CCGGTTAGAGTTGTGTCAGT+TGG | 0.528364 | 4.1:-29359950 | MS.gene52129:CDS |
| TACAAAAGTCATTGATCAGA+AGG | 0.530377 | 4.1:-29358068 | MS.gene52129:intron |
| TTCTTTGAAGTAATCGCCAA+AGG | 0.530535 | 4.1:+29370073 | None:intergenic |
| AATGCTTTGGGGCCACTGAA+AGG | 0.530573 | 4.1:-29357758 | MS.gene52129:CDS |
| AAGAAGCCATTAGCTGGGCA+TGG | 0.530759 | 4.1:-29370052 | MS.gene52129:CDS |
| ATCATATAATACCTGAAGTA+GGG | 0.532869 | 4.1:+29358379 | None:intergenic |
| CCTGCAAAGCATGTTGACAC+TGG | 0.534391 | 4.1:-29366814 | MS.gene52129:CDS |
| TCGAGCTGTTCGGTATGGTC+GGG | 0.534669 | 4.1:-29365084 | MS.gene52129:CDS |
| CCAAAAGGAAGAACGCGTCC+AGG | 0.534992 | 4.1:+29369250 | None:intergenic |
| GCTGATCTAGCTGTTTCAGA+TGG | 0.536347 | 4.1:-29358154 | MS.gene52129:CDS |
| TATCTCTAGCCTCAGTATCA+GGG | 0.541007 | 4.1:+29369293 | None:intergenic |
| GTTAATACTGATGGTGATGT+TGG | 0.542418 | 4.1:-29362320 | MS.gene52129:CDS |
| TATCTTCGATGCTATTCAGC+TGG | 0.542663 | 4.1:-29366719 | MS.gene52129:intron |
| GAACTTGAAATGAAGCATGT+TGG | 0.543494 | 4.1:+29360851 | None:intergenic |
| GTTGATTCAGTTAATACTGA+TGG | 0.545376 | 4.1:-29362329 | MS.gene52129:CDS |
| AGGAGAGTAGGGTCATTGAA+GGG | 0.545848 | 4.1:+29370766 | None:intergenic |
| AGCTACCGGCGTTGGCGAAG+AGG | 0.546190 | 4.1:+29370746 | None:intergenic |
| AAGCATGTTGACACTGGAAT+GGG | 0.546666 | 4.1:-29366808 | MS.gene52129:CDS |
| AGAGGGTTGTGAATGACAAG+AGG | 0.548129 | 4.1:-29371009 | None:intergenic |
| ACAAAGCTGTAGTGTGTGCT+GGG | 0.548423 | 4.1:-29357832 | MS.gene52129:CDS |
| TCGCAGACCCTTGATACGCT+TGG | 0.548676 | 4.1:+29360074 | None:intergenic |
| ACCCAAAAGTGCATTCGAGC+TGG | 0.549128 | 4.1:-29370173 | MS.gene52129:CDS |
| TTACCACATCTCCCTTTCAG+TGG | 0.549551 | 4.1:+29357746 | None:intergenic |
| CTCATCACCACCAAAATATG+TGG | 0.551078 | 4.1:+29369330 | None:intergenic |
| TCAAAATGAATTTCTGTGCA+AGG | 0.551129 | 4.1:+29367222 | None:intergenic |
| CTTCACATTGGTAATGGGAC+TGG | 0.552145 | 4.1:-29360799 | MS.gene52129:CDS |
| CTGATCTAGCTGTTTCAGAT+GGG | 0.557727 | 4.1:-29358153 | MS.gene52129:CDS |
| CTGAAAGGGAGATGTGGTAA+AGG | 0.558294 | 4.1:-29357743 | MS.gene52129:CDS |
| GTTACCTAACATCTCAAAGA+AGG | 0.560082 | 4.1:+29370100 | None:intergenic |
| GGATACATATGGCTTCCCAT+TGG | 0.561612 | 4.1:-29363322 | MS.gene52129:CDS |
| TTCAGGGAAACATACTGAGT+GGG | 0.561646 | 4.1:-29364489 | MS.gene52129:CDS |
| AATGGGACTGGTATCTCTGT+TGG | 0.562252 | 4.1:-29360787 | MS.gene52129:CDS |
| GTGGCATAAATGCGATCTGA+AGG | 0.564396 | 4.1:+29369349 | None:intergenic |
| ATGGGTGACACTGGTCCTTG+TGG | 0.566112 | 4.1:-29367246 | MS.gene52129:CDS |
| TGGCCTTGCCCCTGATACTG+AGG | 0.566728 | 4.1:-29369302 | MS.gene52129:CDS |
| TGTAACGTTAACAGCTGAGA+AGG | 0.569754 | 4.1:-29358176 | MS.gene52129:CDS |
| GCCGATGCCAAGCGTATCAA+GGG | 0.570608 | 4.1:-29360081 | MS.gene52129:CDS |
| ACTCTCCTCTTCGCCAACGC+CGG | 0.576230 | 4.1:-29370751 | MS.gene52129:intron |
| CATAACAGGCAACTGGTGCT+CGG | 0.576350 | 4.1:-29365647 | MS.gene52129:intron |
| TAAAATTGACATGGCATACA+GGG | 0.577632 | 4.1:-29365589 | MS.gene52129:CDS |
| AAATTACATGTCGATGTCGA+AGG | 0.578758 | 4.1:-29363183 | MS.gene52129:CDS |
| GGAAGTGCTAAAGGCTGAAG+AGG | 0.579775 | 4.1:-29365063 | MS.gene52129:CDS |
| ATCAGTTCCTGTCATGGCGG+AGG | 0.579820 | 4.1:+29370888 | None:intergenic |
| TCTATTTCATCTGAATTGTG+TGG | 0.581871 | 4.1:-29359878 | MS.gene52129:CDS |
| AGAAGCCATTAGCTGGGCAT+GGG | 0.582659 | 4.1:-29370051 | MS.gene52129:CDS |
| CTCACACGTAAATGAGGCTA+TGG | 0.583114 | 4.1:-29356884 | MS.gene52129:CDS |
| AGATGCCTCACACGTAAATG+AGG | 0.584387 | 4.1:-29356890 | MS.gene52129:CDS |
| TGAATTGGATGTAAATGCAA+AGG | 0.585842 | 4.1:-29360115 | MS.gene52129:CDS |
| TACACTCGATATCGAGTGGC+CGG | 0.585939 | 4.1:-29370866 | MS.gene52129:CDS |
| ACATCTCAAAGAAGGTGTGA+TGG | 0.587964 | 4.1:+29370108 | None:intergenic |
| GAGTGTATCAGTTCCTGTCA+TGG | 0.589194 | 4.1:+29370882 | None:intergenic |
| AGCTGGTGGTGCTATTGTCA+TGG | 0.590439 | 4.1:-29362979 | MS.gene52129:CDS |
| CATAACGTTCAAGTTTATGG+AGG | 0.590521 | 4.1:-29360829 | MS.gene52129:CDS |
| AGATGTGGTAAAGGAAAAGG+AGG | 0.595385 | 4.1:-29357734 | MS.gene52129:CDS |
| GGCAATCATGTAGACCAGAA+AGG | 0.595519 | 4.1:-29360323 | MS.gene52129:CDS |
| AAAGCATGTTGACACTGGAA+TGG | 0.597758 | 4.1:-29366809 | MS.gene52129:CDS |
| AGCACGGGAGAGTTTGCTCA+AGG | 0.598627 | 4.1:+29370202 | None:intergenic |
| GAGATACCGTGAGAGGGTGG+CGG | 0.599144 | 4.1:+29370940 | None:intergenic |
| TAGCCTCAGTATCAGGGGCA+AGG | 0.601926 | 4.1:+29369299 | None:intergenic |
| CGATGTTGCAGCAGTTCGTG+AGG | 0.602573 | 4.1:-29358095 | MS.gene52129:CDS |
| TTCATCTTTGAAAAGCAATG+TGG | 0.602709 | 4.1:-29358453 | MS.gene52129:CDS |
| TAACCAAAGATGCAGCATCC+CGG | 0.603690 | 4.1:+29367187 | None:intergenic |
| AATGGCTGAGTAATGCTTTG+GGG | 0.604194 | 4.1:-29357769 | MS.gene52129:CDS |
| CAAAGAAGAAGCCATTAGCT+GGG | 0.605025 | 4.1:-29370057 | MS.gene52129:CDS |
| CAAAAGTGCATTCGAGCTGG+TGG | 0.606727 | 4.1:-29370170 | MS.gene52129:CDS |
| ATCTCTAGCCTCAGTATCAG+GGG | 0.608234 | 4.1:+29369294 | None:intergenic |
| TTTCGTTATCAGGGTCAGCA+AGG | 0.608732 | 4.1:+29359909 | None:intergenic |
| GGAGAGTAGGGTCATTGAAG+GGG | 0.610058 | 4.1:+29370767 | None:intergenic |
| AGGGTCATTGAAGGGGACGA+CGG | 0.610203 | 4.1:+29370774 | None:intergenic |
| CGTTGGCGAAGAGGAGAGTA+GGG | 0.610687 | 4.1:+29370755 | None:intergenic |
| CACAATGATCTTGACGACGT+GGG | 0.612293 | 4.1:-29370143 | MS.gene52129:CDS |
| TGAGAAGCAAGTAGATGAAG+CGG | 0.615185 | 4.1:-29359634 | MS.gene52129:CDS |
| TAAACAGGGATTGTCAGTGA+TGG | 0.616674 | 4.1:-29357879 | MS.gene52129:intron |
| TTAGCGCCGCCACCCTCTCA+CGG | 0.618261 | 4.1:-29370946 | MS.gene52129:CDS |
| GGAGGTTTCGTGCTTCACAT+TGG | 0.619470 | 4.1:-29360811 | MS.gene52129:CDS |
| TTTGGTGGTGATGAGAAAGC+TGG | 0.620486 | 4.1:-29369322 | MS.gene52129:CDS |
| AATGTTGTGGCAAATGTGCT+GGG | 0.621430 | 4.1:-29364760 | MS.gene52129:CDS |
| ACAAGCTTCTATGCTGAGCA+AGG | 0.625524 | 4.1:-29362281 | MS.gene52129:CDS |
| ATTTCTGTGCAAGGTCCACA+AGG | 0.625777 | 4.1:+29367231 | None:intergenic |
| AGGACGAGACCCATCAGCAA+TGG | 0.627510 | 4.1:+29365533 | None:intergenic |
| CATAGCCTCATTTACGTGTG+AGG | 0.628945 | 4.1:+29356885 | None:intergenic |
| GTCTTAGGACCATGAGAGTG+TGG | 0.631834 | 4.1:-29362381 | MS.gene52129:intron |
| ATTGGATGTAAATGCAAAGG+AGG | 0.632135 | 4.1:-29360112 | MS.gene52129:CDS |
| ACAATGATCTTGACGACGTG+GGG | 0.633719 | 4.1:-29370142 | MS.gene52129:CDS |
| GACCATACCGAACAGCTCGA+CGG | 0.633901 | 4.1:+29365087 | None:intergenic |
| TTCCATATCTCGAGGCATGT+AGG | 0.636693 | 4.1:+29367153 | None:intergenic |
| TGTCATGGCGGAGGAGACGG+CGG | 0.638181 | 4.1:+29370897 | None:intergenic |
| CTCGAGATACCGTGAGAGGG+TGG | 0.639179 | 4.1:+29370937 | None:intergenic |
| CATTAGGAATGTGATTCAAG+AGG | 0.642500 | 4.1:-29364701 | MS.gene52129:CDS |
| GTTTGCTCAAGGCGGTATTG+GGG | 0.644495 | 4.1:+29370213 | None:intergenic |
| CTTCCCATTGGACCTCACAC+AGG | 0.645170 | 4.1:-29363310 | MS.gene52129:intron |
| GTAAGCTGGATGTATCAGAA+TGG | 0.647412 | 4.1:-29357787 | MS.gene52129:CDS |
| ATGTTGGAAATCAAGAGACC+CGG | 0.647630 | 4.1:+29360867 | None:intergenic |
| CAGTTCAACAGGGAGGCTGA+CGG | 0.650951 | 4.1:-29366853 | MS.gene52129:CDS |
| TGGCGACAAAGTAGTATGCA+AGG | 0.651339 | 4.1:-29360767 | MS.gene52129:intron |
| GAAGTGCTAAAGGCTGAAGA+GGG | 0.651588 | 4.1:-29365062 | MS.gene52129:CDS |
| AGATCTCGAGATACCGTGAG+AGG | 0.654707 | 4.1:+29370933 | None:intergenic |
| GATCTCGAGATACCGTGAGA+GGG | 0.655018 | 4.1:+29370934 | None:intergenic |
| GGGCCACTGAAAGGGAGATG+TGG | 0.655092 | 4.1:-29357749 | MS.gene52129:CDS |
| GACTGACCTCTATACTGCAG+AGG | 0.655134 | 4.1:-29366777 | MS.gene52129:CDS |
| GCACAATGATCTTGACGACG+TGG | 0.658642 | 4.1:-29370144 | MS.gene52129:CDS |
| ATTTCATCTGAATTGTGTGG+TGG | 0.658972 | 4.1:-29359875 | MS.gene52129:intron |
| CTCTTCGAAGAACTTGACGA+AGG | 0.661427 | 4.1:+29370825 | None:intergenic |
| AATCAGGCTTGTAAATGTTG+TGG | 0.668615 | 4.1:-29364773 | MS.gene52129:intron |
| AGACGAGGTTCCATATCTCG+AGG | 0.669081 | 4.1:+29367145 | None:intergenic |
| AGGAAAAGGAGGTCTTGCAA+CGG | 0.669184 | 4.1:-29357723 | MS.gene52129:CDS |
| TGTCTCACCACAGTTCAACA+GGG | 0.670149 | 4.1:-29366863 | MS.gene52129:intron |
| GCGGCGCTAATAGAGTGTTA+CGG | 0.670388 | 4.1:+29370959 | None:intergenic |
| AGATGCTGATAAAATTGACA+TGG | 0.670809 | 4.1:-29365598 | MS.gene52129:CDS |
| AAAGGAAGAACGCGTCCAGG+AGG | 0.675704 | 4.1:+29369253 | None:intergenic |
| TCAGGGAAACATACTGAGTG+GGG | 0.678837 | 4.1:-29364488 | MS.gene52129:CDS |
| GGGAAACATACTGAGTGGGG+AGG | 0.679009 | 4.1:-29364485 | MS.gene52129:intron |
| CTGATACACTCGATATCGAG+TGG | 0.683989 | 4.1:-29370870 | MS.gene52129:CDS |
| AGAACAACTTCACCTGTGTG+AGG | 0.685827 | 4.1:+29363298 | None:intergenic |
| GTTCAGGGAAACATACTGAG+TGG | 0.687325 | 4.1:-29364490 | MS.gene52129:CDS |
| CCATATCTCAAACACACGAG+AGG | 0.696552 | 4.1:-29359766 | MS.gene52129:CDS |
| AGCTTCTATGCTGAGCAAGG+TGG | 0.702055 | 4.1:-29362278 | MS.gene52129:CDS |
| GTGTGTGCATGTATGATTAG+GGG | 0.702667 | 4.1:+29360467 | None:intergenic |
| AAGGTCGTGAGTATGTTCTG+AGG | 0.708774 | 4.1:-29365118 | MS.gene52129:CDS |
| ACGGGAGAGTTTGCTCAAGG+CGG | 0.709960 | 4.1:+29370205 | None:intergenic |
| TGTATCAGTTCCTGTCATGG+CGG | 0.715205 | 4.1:+29370885 | None:intergenic |
| CAAAGCTGTAGTGTGTGCTG+GGG | 0.725318 | 4.1:-29357831 | MS.gene52129:CDS |
| AAAATACCTGAATAAAGACG+AGG | 0.734207 | 4.1:+29367130 | None:intergenic |
| CTCACCACAGTTCAACAGGG+AGG | 0.740280 | 4.1:-29366860 | MS.gene52129:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 29356846 | 29371019 | 29356846 | ID=MS.gene52129 |
| chr4.1 | mRNA | 29356846 | 29371019 | 29356846 | ID=MS.gene52129.t1;Parent=MS.gene52129 |
| chr4.1 | exon | 29370752 | 29371019 | 29370752 | ID=MS.gene52129.t1.exon1;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29370752 | 29371019 | 29370752 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29370037 | 29370275 | 29370037 | ID=MS.gene52129.t1.exon2;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29370037 | 29370275 | 29370037 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29369243 | 29369383 | 29369243 | ID=MS.gene52129.t1.exon3;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29369243 | 29369383 | 29369243 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29367137 | 29367283 | 29367137 | ID=MS.gene52129.t1.exon4;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29367137 | 29367283 | 29367137 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29366720 | 29366872 | 29366720 | ID=MS.gene52129.t1.exon5;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29366720 | 29366872 | 29366720 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29365532 | 29365661 | 29365532 | ID=MS.gene52129.t1.exon6;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29365532 | 29365661 | 29365532 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29365050 | 29365146 | 29365050 | ID=MS.gene52129.t1.exon7;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29365050 | 29365146 | 29365050 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29364669 | 29364789 | 29364669 | ID=MS.gene52129.t1.exon8;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29364669 | 29364789 | 29364669 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29364486 | 29364545 | 29364486 | ID=MS.gene52129.t1.exon9;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29364486 | 29364545 | 29364486 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29363311 | 29363361 | 29363311 | ID=MS.gene52129.t1.exon10;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29363311 | 29363361 | 29363311 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29363128 | 29363223 | 29363128 | ID=MS.gene52129.t1.exon11;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29363128 | 29363223 | 29363128 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29362902 | 29363003 | 29362902 | ID=MS.gene52129.t1.exon12;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29362902 | 29363003 | 29362902 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29362274 | 29362396 | 29362274 | ID=MS.gene52129.t1.exon13;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29362274 | 29362396 | 29362274 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29360768 | 29360899 | 29360768 | ID=MS.gene52129.t1.exon14;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29360768 | 29360899 | 29360768 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29360446 | 29360517 | 29360446 | ID=MS.gene52129.t1.exon15;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29360446 | 29360517 | 29360446 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29360279 | 29360354 | 29360279 | ID=MS.gene52129.t1.exon16;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29360279 | 29360354 | 29360279 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29360059 | 29360201 | 29360059 | ID=MS.gene52129.t1.exon17;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29360059 | 29360201 | 29360059 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29359876 | 29359984 | 29359876 | ID=MS.gene52129.t1.exon18;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29359876 | 29359984 | 29359876 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29359605 | 29359792 | 29359605 | ID=MS.gene52129.t1.exon19;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29359605 | 29359792 | 29359605 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29358391 | 29358480 | 29358391 | ID=MS.gene52129.t1.exon20;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29358391 | 29358480 | 29358391 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29358069 | 29358251 | 29358069 | ID=MS.gene52129.t1.exon21;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29358069 | 29358251 | 29358069 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29357718 | 29357894 | 29357718 | ID=MS.gene52129.t1.exon22;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29357718 | 29357894 | 29357718 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| chr4.1 | exon | 29356846 | 29356917 | 29356846 | ID=MS.gene52129.t1.exon23;Parent=MS.gene52129.t1 |
| chr4.1 | CDS | 29356846 | 29356917 | 29356846 | ID=cds.MS.gene52129.t1;Parent=MS.gene52129.t1 |
| Gene Sequence |
| Protein sequence |
