AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52655

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52655.t1 MTR_7g093200 99.479 384 2 0 1 384 51 434 0.0 797
MS.gene52655.t1 MTR_1g054035 78.961 385 79 2 1 384 1 384 0.0 628
MS.gene52655.t1 MTR_1g111880 66.406 384 107 4 1 384 5 366 0.0 511
MS.gene52655.t1 MTR_5g071170 38.720 328 180 6 25 349 38 347 1.11e-66 216
MS.gene52655.t1 MTR_7g068780 39.077 325 177 7 25 346 92 398 4.32e-63 209
MS.gene52655.t1 MTR_3g464330 36.657 341 192 7 12 349 19 338 7.60e-61 201
MS.gene52655.t1 MTR_4g015630 38.462 325 179 7 25 346 86 392 9.27e-59 197
MS.gene52655.t1 MTR_7g068780 34.191 272 155 6 25 295 92 340 1.53e-36 136
MS.gene52655.t1 MTR_2g460790 25.077 323 199 10 32 344 106 395 3.73e-19 89.0
MS.gene52655.t1 MTR_4g130980 23.913 322 219 9 31 344 91 394 1.56e-17 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52655.t1 AT3G12120 78.590 383 81 1 1 383 1 382 0.0 645
MS.gene52655.t1 AT3G12120 78.590 383 81 1 1 383 1 382 0.0 645
MS.gene52655.t1 AT2G29980 39.255 349 190 8 6 350 8 338 3.64e-66 215
MS.gene52655.t1 AT5G05580 39.039 333 184 8 16 346 74 389 9.32e-65 213
MS.gene52655.t1 AT3G11170 37.725 334 186 7 17 346 81 396 4.42e-64 211
MS.gene52655.t1 AT5G05580 37.578 322 182 8 16 335 74 378 5.68e-58 193
MS.gene52655.t1 AT2G29980 33.898 295 170 7 6 298 8 279 5.10e-40 144
MS.gene52655.t1 AT4G30950 24.859 354 219 13 10 347 76 398 6.93e-17 82.4

Find 134 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGCAATAAAACCAATTT+TGG 0.087341 7.2:-16177124 MS.gene52655:CDS
GCCTGGGTTGTGTGTGTTTA+TGG 0.133830 7.2:-16177378 MS.gene52655:CDS
TCCTCGCCCTCTCTCTTTCT+TGG 0.168598 7.2:-16177895 MS.gene52655:CDS
TACCTGGCTCTCAATGTTTC+AGG 0.200321 7.2:-16177546 MS.gene52655:CDS
CGATAATAATCTCCCAAAAT+TGG 0.209462 7.2:+16177111 None:intergenic
TCTTGGCATGGCCTGCCTAC+TGG 0.238207 7.2:-16177878 MS.gene52655:CDS
TGGGTTGTTGCTAAGGTATT+TGG 0.245996 7.2:+16177620 None:intergenic
ACGTTCACGATCTGAGTAAA+TGG 0.257106 7.2:+16177479 None:intergenic
CTCCATAATGCCTTGTAAAA+TGG 0.258267 7.2:+16177075 None:intergenic
TTGATCTGGCTGAGACTAAA+TGG 0.275742 7.2:+16178038 None:intergenic
GGAATACTTGCAGTGTGCTT+TGG 0.282634 7.2:-16177432 MS.gene52655:CDS
GTTGCATTCTTACCGGTGTT+TGG 0.301494 7.2:-16177845 MS.gene52655:CDS
GAAGAGCAGAGTGGAGAATA+AGG 0.302342 7.2:+16177757 None:intergenic
GAATACTTGCAGTGTGCTTT+GGG 0.308616 7.2:-16177431 MS.gene52655:CDS
CCATGACCAAAGGTCTTGCC+TGG 0.320861 7.2:-16177395 MS.gene52655:CDS
CTTGGCATGGCCTGCCTACT+GGG 0.320968 7.2:-16177877 MS.gene52655:CDS
ATAGATGCTGGACTTCTGTT+TGG 0.345381 7.2:+16177650 None:intergenic
GCTTGTAGTCAATGGATTCT+TGG 0.348788 7.2:-16177346 MS.gene52655:CDS
GTGGAATGGCTTTCTTGATC+TGG 0.350001 7.2:+16178024 None:intergenic
TCTTGGCTGGCCCCTTTACC+TGG 0.352975 7.2:-16177562 MS.gene52655:CDS
TTGCATTCTTACCGGTGTTT+GGG 0.370496 7.2:-16177844 MS.gene52655:CDS
GCAACCGTTGACAGGGATTA+CGG 0.380817 7.2:-16177240 MS.gene52655:CDS
ATCCAAGGTTGCATTCTTAC+CGG 0.383885 7.2:-16177852 MS.gene52655:CDS
TATTGTGGAAGACCTTGTTC+AGG 0.414861 7.2:+16177214 None:intergenic
TTTCTCTCGGTACCTTGATC+TGG 0.420352 7.2:+16177024 None:intergenic
TGCCTAGTGGGTTGTTGCTA+AGG 0.420443 7.2:+16177613 None:intergenic
TAGATGCTGGACTTCTGTTT+GGG 0.423886 7.2:+16177651 None:intergenic
GGACTGGTTGAGAGGAGCTT+TGG 0.429750 7.2:-16177262 MS.gene52655:CDS
GCCCTCTCTCTTTCTTGGCA+TGG 0.433876 7.2:-16177890 MS.gene52655:CDS
GTTCCACTGCTTGTAGTCAA+TGG 0.439920 7.2:-16177354 MS.gene52655:CDS
AACATTGAGAGCCAGGTAAA+GGG 0.440957 7.2:+16177551 None:intergenic
GAGCTTTGGCAACCGTTGAC+AGG 0.441178 7.2:-16177248 MS.gene52655:CDS
CCGAGAGAAAGGGTGTATTC+TGG 0.443942 7.2:-16177011 MS.gene52655:CDS
GAATCGTAATGTGGCAATGC+CGG 0.446519 7.2:+16177294 None:intergenic
CCGAACCTCTGTTCCTCCTT+CGG 0.449015 7.2:-16178111 MS.gene52655:CDS
AGATCAAGGTACCGAGAGAA+AGG 0.451627 7.2:-16177022 MS.gene52655:CDS
CACAACCCAGGCAAGACCTT+TGG 0.458963 7.2:+16177389 None:intergenic
AGGAAGGTGCTGGAAGTAAT+GGG 0.461272 7.2:+16177914 None:intergenic
GAGGAAGGTGCTGGAAGTAA+TGG 0.464655 7.2:+16177913 None:intergenic
AGAGAGGGCGAGGAAGGTGC+TGG 0.467394 7.2:+16177904 None:intergenic
AACAGAAGTCCAGCATCTAT+TGG 0.469935 7.2:-16177647 MS.gene52655:CDS
AGAGAATGACACTGTGAAAC+GGG 0.471061 7.2:-16178078 MS.gene52655:CDS
AGAAAGAGAGAGGGCGAGGA+AGG 0.487304 7.2:+16177898 None:intergenic
TTTGGGAGATTATTATCGGT+TGG 0.487437 7.2:-16177106 MS.gene52655:CDS
CTGTATTTCCATGAAAAGTA+AGG 0.488098 7.2:+16177729 None:intergenic
TGCCTGAAACATTGAGAGCC+AGG 0.490840 7.2:+16177544 None:intergenic
TGGCAAGCAAATCTATCATA+AGG 0.491259 7.2:+16177519 None:intergenic
TGGGACCATGTGGGTTAAAG+TGG 0.493018 7.2:+16177499 None:intergenic
CAGAGAATGACACTGTGAAA+CGG 0.495501 7.2:-16178079 MS.gene52655:CDS
AGGTTGCTGAAGATGGGAGC+TGG 0.495708 7.2:-16178137 None:intergenic
CAAATATATGTATCAGATGC+AGG 0.495723 7.2:-16177453 MS.gene52655:CDS
AAACATTGAGAGCCAGGTAA+AGG 0.498705 7.2:+16177550 None:intergenic
GCCAAGAAAGAGAGAGGGCG+AGG 0.502849 7.2:+16177894 None:intergenic
ACACAACATAGGAGAATGAA+TGG 0.507218 7.2:+16177976 None:intergenic
AATCGTAATGTGGCAATGCC+GGG 0.512224 7.2:+16177295 None:intergenic
CGTTCACGATCTGAGTAAAT+GGG 0.515704 7.2:+16177480 None:intergenic
ATTACCATCACCCTCACTCT+TGG 0.516387 7.2:-16177579 MS.gene52655:CDS
CAAGAGAACCAGTGTTGGAA+TGG 0.522050 7.2:+16177694 None:intergenic
ACGATTCCTCTGAGTGGGAC+TGG 0.523608 7.2:-16177278 MS.gene52655:CDS
CCATCACCCTCACTCTTGGC+TGG 0.525576 7.2:-16177575 MS.gene52655:CDS
CTTAAAACAGTGAGGTGGAA+TGG 0.530569 7.2:+16178010 None:intergenic
ATGCATTCAGTGACTATCAA+TGG 0.532817 7.2:-16177797 MS.gene52655:CDS
AATGGGTGGCAACGTAATAG+AGG 0.533202 7.2:+16177931 None:intergenic
CCAACACTGGTTCTCTTGAG+AGG 0.535940 7.2:-16177689 MS.gene52655:CDS
CACCGGTAAGAATGCAACCT+TGG 0.536943 7.2:+16177850 None:intergenic
GGCCATGCCAAGAAAGAGAG+AGG 0.537304 7.2:+16177888 None:intergenic
CCGAAGGAGGAACAGAGGTT+CGG 0.538906 7.2:+16178111 None:intergenic
TGTTGGAATGGTGTCGGCGA+TGG 0.540335 7.2:+16177706 None:intergenic
TGGTGAGGACTCTGCCTAGT+GGG 0.542219 7.2:+16177601 None:intergenic
ATCTATGTTGAGCCAGATCA+AGG 0.542641 7.2:-16177036 MS.gene52655:CDS
TATTCTGGTACAACAATAAG+TGG 0.543399 7.2:-16176996 MS.gene52655:CDS
TCTGAGTGGGACTGGTTGAG+AGG 0.543952 7.2:-16177270 MS.gene52655:CDS
CCTGCCTACTGGGCTATCCA+AGG 0.546166 7.2:-16177867 MS.gene52655:CDS
CAACACTGGTTCTCTTGAGA+GGG 0.547058 7.2:-16177688 MS.gene52655:CDS
CCTTGGATAGCCCAGTAGGC+AGG 0.549828 7.2:+16177867 None:intergenic
TTTGGAGTACCAATAGATGC+TGG 0.551082 7.2:+16177638 None:intergenic
TACCATCTTGCCATGACCAA+AGG 0.551194 7.2:-16177405 MS.gene52655:CDS
TGGCTCTCAATGTTTCAGGC+AGG 0.559434 7.2:-16177542 MS.gene52655:CDS
GACCTTTGGTCATGGCAAGA+TGG 0.560748 7.2:+16177403 None:intergenic
TTCTCTGACTTCCTAGCCGA+AGG 0.561382 7.2:+16178095 None:intergenic
CGCCGACACCATTCCAACAC+TGG 0.561538 7.2:-16177702 MS.gene52655:CDS
GCCATGCCAAGAAAGAGAGA+GGG 0.562344 7.2:+16177889 None:intergenic
AGCTTTGGCAACCGTTGACA+GGG 0.565749 7.2:-16177247 MS.gene52655:CDS
CATGAGTGTCTGTAATATTG+TGG 0.568101 7.2:+16177199 None:intergenic
CAATGGCTTGATGACACAGT+TGG 0.569230 7.2:-16177780 MS.gene52655:CDS
ACATTACGATTCCTCTGAGT+GGG 0.573964 7.2:-16177283 MS.gene52655:CDS
AAGAGTGAGGGTGATGGTAA+TGG 0.577915 7.2:+16177581 None:intergenic
CCTCTCAAGAGAACCAGTGT+TGG 0.578382 7.2:+16177689 None:intergenic
GTAATAGAGGAAGAAGGCTA+TGG 0.580245 7.2:+16177944 None:intergenic
AACCAGTGTTGGAATGGTGT+CGG 0.580699 7.2:+16177700 None:intergenic
CCTCTGTTCCTCCTTCGGCT+AGG 0.582186 7.2:-16178106 MS.gene52655:CDS
CATGACCAAAGGTCTTGCCT+GGG 0.584525 7.2:-16177394 MS.gene52655:CDS
TGGGTCATTGCACATGAGTG+TGG 0.585000 7.2:-16177825 MS.gene52655:CDS
GCCTCCATTGCATGATAATG+TGG 0.587261 7.2:+16177150 None:intergenic
CCAGAATACACCCTTTCTCT+CGG 0.587954 7.2:+16177011 None:intergenic
TCATGCAATGGAGGCTACCA+AGG 0.589000 7.2:-16177142 MS.gene52655:CDS
GCTTGCCACTTTAACCCACA+TGG 0.593012 7.2:-16177504 MS.gene52655:CDS
ATGGTGAGGACTCTGCCTAG+TGG 0.601259 7.2:+16177600 None:intergenic
CCAGGCAAGACCTTTGGTCA+TGG 0.602591 7.2:+16177395 None:intergenic
AAAGGGGCCAGCCAAGAGTG+AGG 0.608169 7.2:+16177568 None:intergenic
GCAACCTTGGATAGCCCAGT+AGG 0.609261 7.2:+16177863 None:intergenic
TCCATAAACACACACAACCC+AGG 0.613752 7.2:+16177377 None:intergenic
CCAGCCAAGAGTGAGGGTGA+TGG 0.614753 7.2:+16177575 None:intergenic
GATCAAGGTACCGAGAGAAA+GGG 0.616655 7.2:-16177021 MS.gene52655:CDS
TCTGACTTCCTAGCCGAAGG+AGG 0.619871 7.2:+16178098 None:intergenic
CACTCAGAGGAATCGTAATG+TGG 0.622937 7.2:+16177285 None:intergenic
AATCCATTGACTACAAGCAG+TGG 0.623001 7.2:+16177351 None:intergenic
GGTGAGGTCATACACAACAT+AGG 0.623108 7.2:+16177965 None:intergenic
ACATTGAGAGCCAGGTAAAG+GGG 0.624710 7.2:+16177552 None:intergenic
GGCAACGTAATAGAGGAAGA+AGG 0.631803 7.2:+16177938 None:intergenic
AATGCCACATTATCATGCAA+TGG 0.633031 7.2:-16177154 MS.gene52655:CDS
GCCACATTATCATGCAATGG+AGG 0.633822 7.2:-16177151 MS.gene52655:CDS
TCTGAGTAAATGGGACCATG+TGG 0.642110 7.2:+16177489 None:intergenic
TACCTTAGCAACAACCCACT+AGG 0.642926 7.2:-16177615 MS.gene52655:CDS
TTGCTGAAGATGGGAGCTGG+TGG 0.643245 7.2:-16178134 None:intergenic
CACATTACGATTCCTCTGAG+TGG 0.649598 7.2:-16177284 MS.gene52655:CDS
ATTGATAGTCACTGAATGCA+TGG 0.657583 7.2:+16177799 None:intergenic
AAGGGGCCAGCCAAGAGTGA+GGG 0.658123 7.2:+16177569 None:intergenic
GAGCGCTTAAAACAGTGAGG+TGG 0.659884 7.2:+16178005 None:intergenic
CTGAGTAAATGGGACCATGT+GGG 0.661466 7.2:+16177490 None:intergenic
ATGTGCAATGACCCAAACAC+CGG 0.662992 7.2:+16177833 None:intergenic
CAATATTACAGACACTCATG+TGG 0.663012 7.2:-16177196 MS.gene52655:CDS
TGCATGATAATGTGGCATTG+TGG 0.668075 7.2:+16177158 None:intergenic
TCTCAACCAGTCCCACTCAG+AGG 0.673811 7.2:+16177272 None:intergenic
GATTCCGTAATCCCTGTCAA+CGG 0.680193 7.2:+16177236 None:intergenic
TGAGGGTGATGGTAATGGTG+AGG 0.680817 7.2:+16177586 None:intergenic
GGATTACGGAATCCTGAACA+AGG 0.686478 7.2:-16177226 MS.gene52655:CDS
AGAGGAAGAAGGCTATGGTG+AGG 0.694680 7.2:+16177949 None:intergenic
CCTAGCCGAAGGAGGAACAG+AGG 0.707032 7.2:+16178106 None:intergenic
AAGGCACAAGAAGAGCAGAG+TGG 0.708399 7.2:+16177748 None:intergenic
ATCTGGCTGAGACTAAATGG+AGG 0.708633 7.2:+16178041 None:intergenic
AAGGTGCTGGAAGTAATGGG+TGG 0.711910 7.2:+16177917 None:intergenic
ACAGAGCGCTTAAAACAGTG+AGG 0.748360 7.2:+16178002 None:intergenic
GATAGTCACTGAATGCATGG+TGG 0.772836 7.2:+16177802 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGCAATAAAACCAATTTT+GGG - chr7.2:16177995-16178014 MS.gene52655:CDS 25.0%
!!! CAATTTTGGGAGATTATTAT+CGG - chr7.2:16178008-16178027 MS.gene52655:CDS 25.0%
CAAATATATGTATCAGATGC+AGG - chr7.2:16177665-16177684 MS.gene52655:CDS 30.0%
CGATAATAATCTCCCAAAAT+TGG + chr7.2:16178010-16178029 None:intergenic 30.0%
CTGTATTTCCATGAAAAGTA+AGG + chr7.2:16177392-16177411 None:intergenic 30.0%
TATTCTGGTACAACAATAAG+TGG - chr7.2:16178122-16178141 MS.gene52655:CDS 30.0%
! CAAGGCAATAAAACCAATTT+TGG - chr7.2:16177994-16178013 MS.gene52655:CDS 30.0%
!!! CAAAATTGGTTTTATTGCCT+TGG + chr7.2:16177996-16178015 None:intergenic 30.0%
AATGCCACATTATCATGCAA+TGG - chr7.2:16177964-16177983 MS.gene52655:CDS 35.0%
ACACAACATAGGAGAATGAA+TGG + chr7.2:16177145-16177164 None:intergenic 35.0%
ATGCATTCAGTGACTATCAA+TGG - chr7.2:16177321-16177340 MS.gene52655:CDS 35.0%
CAATATTACAGACACTCATG+TGG - chr7.2:16177922-16177941 MS.gene52655:CDS 35.0%
CATGAGTGTCTGTAATATTG+TGG + chr7.2:16177922-16177941 None:intergenic 35.0%
CTCCATAATGCCTTGTAAAA+TGG + chr7.2:16178046-16178065 None:intergenic 35.0%
TGGCAAGCAAATCTATCATA+AGG + chr7.2:16177602-16177621 None:intergenic 35.0%
TTTGGGAGATTATTATCGGT+TGG - chr7.2:16178012-16178031 MS.gene52655:CDS 35.0%
! ATTGATAGTCACTGAATGCA+TGG + chr7.2:16177322-16177341 None:intergenic 35.0%
! CTAAATGGAGGCTTTTCAAA+TGG + chr7.2:16177068-16177087 None:intergenic 35.0%
! GGATGAAACACCATTTTACA+AGG - chr7.2:16178033-16178052 MS.gene52655:CDS 35.0%
!! CACCATTTTACAAGGCATTA+TGG - chr7.2:16178041-16178060 MS.gene52655:CDS 35.0%
!! TTCTTGTGCCTTACTTTTCA+TGG - chr7.2:16177381-16177400 MS.gene52655:CDS 35.0%
AAACATTGAGAGCCAGGTAA+AGG + chr7.2:16177571-16177590 None:intergenic 40.0%
AACAGAAGTCCAGCATCTAT+TGG - chr7.2:16177471-16177490 MS.gene52655:CDS 40.0%
AACATTGAGAGCCAGGTAAA+GGG + chr7.2:16177570-16177589 None:intergenic 40.0%
ACATTACGATTCCTCTGAGT+GGG - chr7.2:16177835-16177854 MS.gene52655:CDS 40.0%
ACGTTCACGATCTGAGTAAA+TGG + chr7.2:16177642-16177661 None:intergenic 40.0%
AGAGAATGACACTGTGAAAC+GGG - chr7.2:16177040-16177059 MS.gene52655:CDS 40.0%
ATAGATGCTGGACTTCTGTT+TGG + chr7.2:16177471-16177490 None:intergenic 40.0%
ATCCAAGGTTGCATTCTTAC+CGG - chr7.2:16177266-16177285 MS.gene52655:CDS 40.0%
ATCTATGTTGAGCCAGATCA+AGG - chr7.2:16178082-16178101 MS.gene52655:CDS 40.0%
CAGAGAATGACACTGTGAAA+CGG - chr7.2:16177039-16177058 MS.gene52655:CDS 40.0%
CGTTCACGATCTGAGTAAAT+GGG + chr7.2:16177641-16177660 None:intergenic 40.0%
CTTAAAACAGTGAGGTGGAA+TGG + chr7.2:16177111-16177130 None:intergenic 40.0%
GAATACTTGCAGTGTGCTTT+GGG - chr7.2:16177687-16177706 MS.gene52655:CDS 40.0%
GTAATAGAGGAAGAAGGCTA+TGG + chr7.2:16177177-16177196 None:intergenic 40.0%
TAGATGCTGGACTTCTGTTT+GGG + chr7.2:16177470-16177489 None:intergenic 40.0%
TATTGTGGAAGACCTTGTTC+AGG + chr7.2:16177907-16177926 None:intergenic 40.0%
TTGATCTGGCTGAGACTAAA+TGG + chr7.2:16177083-16177102 None:intergenic 40.0%
TTGCATTCTTACCGGTGTTT+GGG - chr7.2:16177274-16177293 MS.gene52655:CDS 40.0%
! AATCCATTGACTACAAGCAG+TGG + chr7.2:16177770-16177789 None:intergenic 40.0%
! ATTTTTGCAGCATACTCACC+CGG - chr7.2:16177805-16177824 MS.gene52655:CDS 40.0%
! GCTTGTAGTCAATGGATTCT+TGG - chr7.2:16177772-16177791 MS.gene52655:CDS 40.0%
! TGCATGATAATGTGGCATTG+TGG + chr7.2:16177963-16177982 None:intergenic 40.0%
! TGGGTTGTTGCTAAGGTATT+TGG + chr7.2:16177501-16177520 None:intergenic 40.0%
! TTTGGAGTACCAATAGATGC+TGG + chr7.2:16177483-16177502 None:intergenic 40.0%
AATCGTAATGTGGCAATGCC+GGG + chr7.2:16177826-16177845 None:intergenic 45.0%
AATGGGTGGCAACGTAATAG+AGG + chr7.2:16177190-16177209 None:intergenic 45.0%
ACATTGAGAGCCAGGTAAAG+GGG + chr7.2:16177569-16177588 None:intergenic 45.0%
ATCTGGCTGAGACTAAATGG+AGG + chr7.2:16177080-16177099 None:intergenic 45.0%
ATGTGCAATGACCCAAACAC+CGG + chr7.2:16177288-16177307 None:intergenic 45.0%
ATTACCATCACCCTCACTCT+TGG - chr7.2:16177539-16177558 MS.gene52655:CDS 45.0%
CACATTACGATTCCTCTGAG+TGG - chr7.2:16177834-16177853 MS.gene52655:CDS 45.0%
CACTCAGAGGAATCGTAATG+TGG + chr7.2:16177836-16177855 None:intergenic 45.0%
CCAGAATACACCCTTTCTCT+CGG + chr7.2:16178110-16178129 None:intergenic 45.0%
CTGAGTAAATGGGACCATGT+GGG + chr7.2:16177631-16177650 None:intergenic 45.0%
GAAGAGCAGAGTGGAGAATA+AGG + chr7.2:16177364-16177383 None:intergenic 45.0%
GAATCGTAATGTGGCAATGC+CGG + chr7.2:16177827-16177846 None:intergenic 45.0%
GATAGTCACTGAATGCATGG+TGG + chr7.2:16177319-16177338 None:intergenic 45.0%
GATTCCGTAATCCCTGTCAA+CGG + chr7.2:16177885-16177904 None:intergenic 45.0%
GCCACATTATCATGCAATGG+AGG - chr7.2:16177967-16177986 MS.gene52655:CDS 45.0%
GGAATACTTGCAGTGTGCTT+TGG - chr7.2:16177686-16177705 MS.gene52655:CDS 45.0%
GGATTACGGAATCCTGAACA+AGG - chr7.2:16177892-16177911 MS.gene52655:CDS 45.0%
GGCAACGTAATAGAGGAAGA+AGG + chr7.2:16177183-16177202 None:intergenic 45.0%
GGTGAGGTCATACACAACAT+AGG + chr7.2:16177156-16177175 None:intergenic 45.0%
GTGGAATGGCTTTCTTGATC+TGG + chr7.2:16177097-16177116 None:intergenic 45.0%
GTTCCACTGCTTGTAGTCAA+TGG - chr7.2:16177764-16177783 MS.gene52655:CDS 45.0%
GTTGCATTCTTACCGGTGTT+TGG - chr7.2:16177273-16177292 MS.gene52655:CDS 45.0%
TACCATCTTGCCATGACCAA+AGG - chr7.2:16177713-16177732 MS.gene52655:CDS 45.0%
TACCTTAGCAACAACCCACT+AGG - chr7.2:16177503-16177522 MS.gene52655:CDS 45.0%
TCCATAAACACACACAACCC+AGG + chr7.2:16177744-16177763 None:intergenic 45.0%
TCTGAGTAAATGGGACCATG+TGG + chr7.2:16177632-16177651 None:intergenic 45.0%
TTTCTCTCGGTACCTTGATC+TGG + chr7.2:16178097-16178116 None:intergenic 45.0%
! AACCAGTGTTGGAATGGTGT+CGG + chr7.2:16177421-16177440 None:intergenic 45.0%
! AAGAGTGAGGGTGATGGTAA+TGG + chr7.2:16177540-16177559 None:intergenic 45.0%
! ACAGAGCGCTTAAAACAGTG+AGG + chr7.2:16177119-16177138 None:intergenic 45.0%
! CAAGAGAACCAGTGTTGGAA+TGG + chr7.2:16177427-16177446 None:intergenic 45.0%
! CAATGGCTTGATGACACAGT+TGG - chr7.2:16177338-16177357 MS.gene52655:CDS 45.0%
! GCCTCCATTGCATGATAATG+TGG + chr7.2:16177971-16177990 None:intergenic 45.0%
! TACCTGGCTCTCAATGTTTC+AGG - chr7.2:16177572-16177591 MS.gene52655:CDS 45.0%
!! AGATCAAGGTACCGAGAGAA+AGG - chr7.2:16178096-16178115 MS.gene52655:CDS 45.0%
!! AGGAAGGTGCTGGAAGTAAT+GGG + chr7.2:16177207-16177226 None:intergenic 45.0%
!! CAACACTGGTTCTCTTGAGA+GGG - chr7.2:16177430-16177449 MS.gene52655:CDS 45.0%
!! GATCAAGGTACCGAGAGAAA+GGG - chr7.2:16178097-16178116 MS.gene52655:CDS 45.0%
AAGGCACAAGAAGAGCAGAG+TGG + chr7.2:16177373-16177392 None:intergenic 50.0%
AGAGGAAGAAGGCTATGGTG+AGG + chr7.2:16177172-16177191 None:intergenic 50.0%
CACCGGTAAGAATGCAACCT+TGG + chr7.2:16177271-16177290 None:intergenic 50.0%
CATGACCAAAGGTCTTGCCT+GGG - chr7.2:16177724-16177743 MS.gene52655:CDS 50.0%
CCTCTCAAGAGAACCAGTGT+TGG + chr7.2:16177432-16177451 None:intergenic 50.0%
GACCTTTGGTCATGGCAAGA+TGG + chr7.2:16177718-16177737 None:intergenic 50.0%
GAGCGCTTAAAACAGTGAGG+TGG + chr7.2:16177116-16177135 None:intergenic 50.0%
GCAACCGTTGACAGGGATTA+CGG - chr7.2:16177878-16177897 MS.gene52655:CDS 50.0%
GCCATGCCAAGAAAGAGAGA+GGG + chr7.2:16177232-16177251 None:intergenic 50.0%
GCCTGGGTTGTGTGTGTTTA+TGG - chr7.2:16177740-16177759 MS.gene52655:CDS 50.0%
TCATGCAATGGAGGCTACCA+AGG - chr7.2:16177976-16177995 MS.gene52655:CDS 50.0%
TGCCTGAAACATTGAGAGCC+AGG + chr7.2:16177577-16177596 None:intergenic 50.0%
TGGCTCTCAATGTTTCAGGC+AGG - chr7.2:16177576-16177595 MS.gene52655:CDS 50.0%
TGGGTCATTGCACATGAGTG+TGG - chr7.2:16177293-16177312 MS.gene52655:CDS 50.0%
TTCTCTGACTTCCTAGCCGA+AGG + chr7.2:16177026-16177045 None:intergenic 50.0%
! AGCTTTGGCAACCGTTGACA+GGG - chr7.2:16177871-16177890 MS.gene52655:CDS 50.0%
! CCGAGAGAAAGGGTGTATTC+TGG - chr7.2:16178107-16178126 MS.gene52655:CDS 50.0%
! TGGGACCATGTGGGTTAAAG+TGG + chr7.2:16177622-16177641 None:intergenic 50.0%
!! AAGGTGCTGGAAGTAATGGG+TGG + chr7.2:16177204-16177223 None:intergenic 50.0%
!! CCAACACTGGTTCTCTTGAG+AGG - chr7.2:16177429-16177448 MS.gene52655:CDS 50.0%
!! GAGGAAGGTGCTGGAAGTAA+TGG + chr7.2:16177208-16177227 None:intergenic 50.0%
!! GCTTGCCACTTTAACCCACA+TGG - chr7.2:16177614-16177633 MS.gene52655:CDS 50.0%
!! TGAGGGTGATGGTAATGGTG+AGG + chr7.2:16177535-16177554 None:intergenic 50.0%
!! TGCCTAGTGGGTTGTTGCTA+AGG + chr7.2:16177508-16177527 None:intergenic 50.0%
ACGATTCCTCTGAGTGGGAC+TGG - chr7.2:16177840-16177859 MS.gene52655:CDS 55.0%
AGAAAGAGAGAGGGCGAGGA+AGG + chr7.2:16177223-16177242 None:intergenic 55.0%
ATGGTGAGGACTCTGCCTAG+TGG + chr7.2:16177521-16177540 None:intergenic 55.0%
CACAACCCAGGCAAGACCTT+TGG + chr7.2:16177732-16177751 None:intergenic 55.0%
CCAGGCAAGACCTTTGGTCA+TGG + chr7.2:16177726-16177745 None:intergenic 55.0%
CCATGACCAAAGGTCTTGCC+TGG - chr7.2:16177723-16177742 MS.gene52655:CDS 55.0%
CCGAACCTCTGTTCCTCCTT+CGG - chr7.2:16177007-16177026 MS.gene52655:CDS 55.0%
CCGAAGGAGGAACAGAGGTT+CGG + chr7.2:16177010-16177029 None:intergenic 55.0%
GCAACCTTGGATAGCCCAGT+AGG + chr7.2:16177258-16177277 None:intergenic 55.0%
GCCCTCTCTCTTTCTTGGCA+TGG - chr7.2:16177228-16177247 MS.gene52655:CDS 55.0%
GGCCATGCCAAGAAAGAGAG+AGG + chr7.2:16177233-16177252 None:intergenic 55.0%
TCCTCGCCCTCTCTCTTTCT+TGG - chr7.2:16177223-16177242 MS.gene52655:CDS 55.0%
TCTCAACCAGTCCCACTCAG+AGG + chr7.2:16177849-16177868 None:intergenic 55.0%
TCTGACTTCCTAGCCGAAGG+AGG + chr7.2:16177023-16177042 None:intergenic 55.0%
TGGTGAGGACTCTGCCTAGT+GGG + chr7.2:16177520-16177539 None:intergenic 55.0%
! GAGCTTTGGCAACCGTTGAC+AGG - chr7.2:16177870-16177889 MS.gene52655:CDS 55.0%
!! GGACTGGTTGAGAGGAGCTT+TGG - chr7.2:16177856-16177875 MS.gene52655:CDS 55.0%
!! TCTGAGTGGGACTGGTTGAG+AGG - chr7.2:16177848-16177867 MS.gene52655:CDS 55.0%
!! TGTTGGAATGGTGTCGGCGA+TGG + chr7.2:16177415-16177434 None:intergenic 55.0%
AAAGGGGCCAGCCAAGAGTG+AGG + chr7.2:16177553-16177572 None:intergenic 60.0%
AAGGGGCCAGCCAAGAGTGA+GGG + chr7.2:16177552-16177571 None:intergenic 60.0%
CCAGCCAAGAGTGAGGGTGA+TGG + chr7.2:16177546-16177565 None:intergenic 60.0%
CCATCACCCTCACTCTTGGC+TGG - chr7.2:16177543-16177562 MS.gene52655:CDS 60.0%
CCTAGCCGAAGGAGGAACAG+AGG + chr7.2:16177015-16177034 None:intergenic 60.0%
CCTCTGTTCCTCCTTCGGCT+AGG - chr7.2:16177012-16177031 MS.gene52655:CDS 60.0%
CCTGCCTACTGGGCTATCCA+AGG - chr7.2:16177251-16177270 MS.gene52655:CDS 60.0%
CCTTGGATAGCCCAGTAGGC+AGG + chr7.2:16177254-16177273 None:intergenic 60.0%
CGCCGACACCATTCCAACAC+TGG - chr7.2:16177416-16177435 MS.gene52655:CDS 60.0%
CTTGGCATGGCCTGCCTACT+GGG - chr7.2:16177241-16177260 MS.gene52655:CDS 60.0%
GCCAAGAAAGAGAGAGGGCG+AGG + chr7.2:16177227-16177246 None:intergenic 60.0%
TCTTGGCATGGCCTGCCTAC+TGG - chr7.2:16177240-16177259 MS.gene52655:CDS 60.0%
! TCTTGGCTGGCCCCTTTACC+TGG - chr7.2:16177556-16177575 MS.gene52655:CDS 60.0%
! AGAGAGGGCGAGGAAGGTGC+TGG + chr7.2:16177217-16177236 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 16176993 16178147 16176993 ID=MS.gene52655
chr7.2 mRNA 16176993 16178147 16176993 ID=MS.gene52655.t1;Parent=MS.gene52655
chr7.2 exon 16176993 16178147 16176993 ID=MS.gene52655.t1.exon1;Parent=MS.gene52655.t1
chr7.2 CDS 16176993 16178147 16176993 ID=cds.MS.gene52655.t1;Parent=MS.gene52655.t1
Gene Sequence

>MS.gene52655

ATGGGAGCTGGTGGCCGAACCTCTGTTCCTCCTTCGGCTAGGAAGTCAGAGAATGACACTGTGAAACGGGTGCCATTTGAAAAGCCTCCATTTAGTCTCAGCCAGATCAAGAAAGCCATTCCACCTCACTGTTTTAAGCGCTCTGTTATCCATTCATTCTCCTATGTTGTGTATGACCTCACCATAGCCTTCTTCCTCTATTACGTTGCCACCCATTACTTCCAGCACCTTCCTCGCCCTCTCTCTTTCTTGGCATGGCCTGCCTACTGGGCTATCCAAGGTTGCATTCTTACCGGTGTTTGGGTCATTGCACATGAGTGTGGCCACCATGCATTCAGTGACTATCAATGGCTTGATGACACAGTTGGCCTTATTCTCCACTCTGCTCTTCTTGTGCCTTACTTTTCATGGAAATACAGCCATCGCCGACACCATTCCAACACTGGTTCTCTTGAGAGGGATGAAGTCTTTGTGCCCAAACAGAAGTCCAGCATCTATTGGTACTCCAAATACCTTAGCAACAACCCACTAGGCAGAGTCCTCACCATTACCATCACCCTCACTCTTGGCTGGCCCCTTTACCTGGCTCTCAATGTTTCAGGCAGGCCTTATGATAGATTTGCTTGCCACTTTAACCCACATGGTCCCATTTACTCAGATCGTGAACGTCTTCAAATATATGTATCAGATGCAGGAATACTTGCAGTGTGCTTTGGGCTTTACCATCTTGCCATGACCAAAGGTCTTGCCTGGGTTGTGTGTGTTTATGGAGTTCCACTGCTTGTAGTCAATGGATTCTTGGTGTTGATTACATTTTTGCAGCATACTCACCCGGCATTGCCACATTACGATTCCTCTGAGTGGGACTGGTTGAGAGGAGCTTTGGCAACCGTTGACAGGGATTACGGAATCCTGAACAAGGTCTTCCACAATATTACAGACACTCATGTGGCACATCACTTGTTCTCCACAATGCCACATTATCATGCAATGGAGGCTACCAAGGCAATAAAACCAATTTTGGGAGATTATTATCGGTTGGATGAAACACCATTTTACAAGGCATTATGGAGAGAAGCTAGAGAGTGTATCTATGTTGAGCCAGATCAAGGTACCGAGAGAAAGGGTGTATTCTGGTACAACAATAAGTGGTGA
Protein sequence

>MS.gene52655.t1

MGAGGRTSVPPSARKSENDTVKRVPFEKPPFSLSQIKKAIPPHCFKRSVIHSFSYVVYDLTIAFFLYYVATHYFQHLPRPLSFLAWPAYWAIQGCILTGVWVIAHECGHHAFSDYQWLDDTVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSSIYWYSKYLSNNPLGRVLTITITLTLGWPLYLALNVSGRPYDRFACHFNPHGPIYSDRERLQIYVSDAGILAVCFGLYHLAMTKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGDYYRLDETPFYKALWREARECIYVEPDQGTERKGVFWYNNKW