Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53264.t1 | XP_003629837.1 | 99.1 | 215 | 2 | 0 | 1 | 215 | 1 | 215 | 4.30E-114 | 420.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53264.t1 | P35402 | 81.9 | 215 | 39 | 0 | 1 | 215 | 1 | 215 | 8.8e-100 | 364.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53264.t1 | G7L790 | 99.1 | 215 | 2 | 0 | 1 | 215 | 1 | 215 | 3.1e-114 | 420.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68324 | MS.gene53264 | PPI |
| MS.gene003399 | MS.gene53264 | PPI |
| MS.gene53264 | MS.gene027563 | PPI |
| MS.gene052281 | MS.gene53264 | PPI |
| MS.gene28949 | MS.gene53264 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53264.t1 | MTR_8g087430 | 99.070 | 215 | 2 | 0 | 1 | 215 | 1 | 215 | 3.30e-157 | 434 |
| MS.gene53264.t1 | MTR_7g056337 | 73.023 | 215 | 58 | 0 | 1 | 215 | 1 | 215 | 5.52e-113 | 322 |
| MS.gene53264.t1 | MTR_4g075550 | 35.526 | 228 | 128 | 9 | 2 | 215 | 47 | 269 | 1.85e-27 | 105 |
| MS.gene53264.t1 | MTR_8g012595 | 35.088 | 228 | 130 | 7 | 2 | 214 | 47 | 271 | 2.57e-27 | 105 |
| MS.gene53264.t1 | MTR_3g113920 | 33.188 | 229 | 132 | 8 | 2 | 215 | 47 | 269 | 2.19e-26 | 102 |
| MS.gene53264.t1 | MTR_8g012605 | 35.465 | 172 | 103 | 4 | 2 | 169 | 47 | 214 | 4.24e-25 | 99.4 |
| MS.gene53264.t1 | MTR_8g012615 | 33.668 | 199 | 115 | 7 | 31 | 215 | 9 | 204 | 2.59e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53264.t1 | AT1G29330 | 81.860 | 215 | 39 | 0 | 1 | 215 | 1 | 215 | 9.28e-134 | 374 |
| MS.gene53264.t1 | AT3G25040 | 72.093 | 215 | 60 | 0 | 1 | 215 | 1 | 215 | 3.43e-116 | 330 |
| MS.gene53264.t1 | AT1G29330 | 84.314 | 153 | 24 | 0 | 63 | 215 | 1 | 153 | 2.30e-94 | 272 |
| MS.gene53264.t1 | AT3G25160 | 33.921 | 227 | 133 | 5 | 2 | 214 | 48 | 271 | 1.38e-28 | 108 |
| MS.gene53264.t1 | AT1G19970 | 34.498 | 229 | 129 | 9 | 2 | 215 | 47 | 269 | 2.57e-26 | 102 |
| MS.gene53264.t1 | AT4G38790 | 33.624 | 229 | 131 | 9 | 2 | 215 | 48 | 270 | 1.48e-25 | 100 |
| MS.gene53264.t1 | AT2G21190 | 31.878 | 229 | 135 | 9 | 2 | 215 | 44 | 266 | 1.60e-25 | 100 |
| MS.gene53264.t1 | AT1G75760 | 32.751 | 229 | 133 | 8 | 2 | 215 | 47 | 269 | 1.92e-25 | 100 |
| MS.gene53264.t1 | AT1G75760 | 34.112 | 214 | 121 | 8 | 2 | 201 | 47 | 254 | 6.74e-25 | 98.6 |
| MS.gene53264.t1 | AT1G19970 | 35.028 | 177 | 104 | 6 | 2 | 173 | 47 | 217 | 2.90e-22 | 91.3 |
| MS.gene53264.t1 | AT1G75760 | 33.714 | 175 | 105 | 6 | 2 | 171 | 47 | 215 | 6.63e-21 | 87.4 |
Find 36 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTCAATTTCAGATCTTC+TGG | 0.214649 | 4.3:+13420455 | MS.gene53264:intron |
| GGGCAATATGTATTCTTTCT+TGG | 0.265304 | 4.3:+13420562 | MS.gene53264:CDS |
| TGTGTTCTTAGCACGTTATT+TGG | 0.272313 | 4.3:+13417428 | MS.gene53264:CDS |
| TGTTGCTGCTAGCTTTCTTC+TGG | 0.281140 | 4.3:+13417602 | MS.gene53264:CDS |
| GGCAATATGTATTCTTTCTT+GGG | 0.306579 | 4.3:+13420563 | MS.gene53264:CDS |
| TCTTCTACTATTACTTCATC+AGG | 0.375089 | 4.3:+13421149 | MS.gene53264:CDS |
| GTGGATTATACATTCTCAAT+TGG | 0.399809 | 4.3:+13420953 | MS.gene53264:CDS |
| TACGCTACCAAATCATGTTC+AGG | 0.407698 | 4.3:+13417286 | MS.gene53264:CDS |
| ATTGTGACCTGAACATGATT+TGG | 0.429861 | 4.3:-13417293 | None:intergenic |
| CTTCATAAACGTATTATAAA+CGG | 0.434373 | 4.3:-13417472 | None:intergenic |
| CTAGTTCGTTGGCTATTGTT+TGG | 0.468529 | 4.3:+13417508 | MS.gene53264:CDS |
| ACGTTATTTGGATCTGTTCA+CGG | 0.477076 | 4.3:+13417440 | MS.gene53264:CDS |
| ATGTCAATTTCAGATCTTCT+GGG | 0.481234 | 4.3:+13420456 | MS.gene53264:intron |
| GGAAATGTTGATAATTTGAC+TGG | 0.481668 | 4.3:+13420541 | MS.gene53264:CDS |
| GGCGAGTCTGAAGATGTTCA+TGG | 0.501045 | 4.3:-13417215 | None:intergenic |
| TTCGTTGCAACAAAACCAGC+TGG | 0.501585 | 4.3:-13420516 | None:intergenic |
| GTGCATGCGTGTTCATCCTA+TGG | 0.502901 | 4.3:+13417530 | MS.gene53264:CDS |
| TCATAGCTTCTCTTAACCAT+AGG | 0.504328 | 4.3:-13417546 | None:intergenic |
| CTGAACAACACCTGAGACAC+AGG | 0.506289 | 4.3:-13421107 | None:intergenic |
| CTGAGCCACGTTTCACTCGA+TGG | 0.510830 | 4.3:+13420992 | MS.gene53264:CDS |
| AGTTGCAATACTGCCCCAGC+TGG | 0.517340 | 4.3:+13420501 | MS.gene53264:CDS |
| AGTCTTCATTGCTAGTTCGT+TGG | 0.524045 | 4.3:+13417497 | MS.gene53264:CDS |
| CCACGTTTCACTCGATGGAT+AGG | 0.526685 | 4.3:+13420997 | MS.gene53264:CDS |
| GATAATGACGAAAAGTATCA+AGG | 0.541133 | 4.3:-13417575 | None:intergenic |
| AATCTTGAGATAATTCAAGC+AGG | 0.588695 | 4.3:-13421282 | None:intergenic |
| TTAAATTGCAGTGCGTATCG+TGG | 0.598999 | 4.3:+13420934 | MS.gene53264:intron |
| CGAGAAATTCACCTTCCTTG+AGG | 0.604093 | 4.3:+13417638 | MS.gene53264:CDS |
| TCGTTGCAACAAAACCAGCT+GGG | 0.607236 | 4.3:-13420515 | None:intergenic |
| ATGAACATCTTCAGACTCGC+CGG | 0.613512 | 4.3:+13417217 | MS.gene53264:CDS |
| ATAGAAAGGGACCTCAAGGA+AGG | 0.624693 | 4.3:-13417649 | None:intergenic |
| GAGGAGATGAGTCATGTCAC+CGG | 0.626170 | 4.3:-13417236 | None:intergenic |
| CCTATCCATCGAGTGAAACG+TGG | 0.656144 | 4.3:-13420997 | None:intergenic |
| CGTTGCAACAAAACCAGCTG+GGG | 0.659984 | 4.3:-13420514 | None:intergenic |
| GGAGGAGAACGAGAATGCTG+AGG | 0.684833 | 4.3:-13417255 | None:intergenic |
| AACGTGGCTCAGTCAAATAG+CGG | 0.705507 | 4.3:-13420981 | None:intergenic |
| GAAATGTTGATAATTTGACT+GGG | 0.715465 | 4.3:+13420542 | MS.gene53264:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAGTATAATTTGAA+AGG | + | chr4.3:13419987-13420006 | MS.gene53264:intron | 10.0% |
| !! | AATAAGGCTATAAAATAAAA+AGG | + | chr4.3:13418288-13418307 | MS.gene53264:intron | 15.0% |
| !! | GATAATTATTAAAAGAAACA+TGG | + | chr4.3:13418377-13418396 | MS.gene53264:intron | 15.0% |
| !!! | ATTTGAAAATGTTGTTTATT+TGG | + | chr4.3:13420744-13420763 | MS.gene53264:intron | 15.0% |
| !!! | TTGATAATTGATATATGTAA+TGG | + | chr4.3:13420713-13420732 | MS.gene53264:intron | 15.0% |
| !! | AGGTAAACAATATTTATTTG+TGG | + | chr4.3:13421169-13421188 | MS.gene53264:intron | 20.0% |
| !! | ATAAGATTCATAGATAGAAA+GGG | - | chr4.3:13417665-13417684 | None:intergenic | 20.0% |
| !! | ATTACAGTATGAGTAAAATA+AGG | + | chr4.3:13418272-13418291 | MS.gene53264:intron | 20.0% |
| !! | CACTGCAATTTAAAAATAAA+TGG | - | chr4.3:13420927-13420946 | None:intergenic | 20.0% |
| !! | CTTCATAAACGTATTATAAA+CGG | - | chr4.3:13417475-13417494 | None:intergenic | 20.0% |
| !! | GAAACTAACAAAAAAAAACA+GGG | - | chr4.3:13419543-13419562 | None:intergenic | 20.0% |
| !! | GCATTAAATAGTTAGAAAAA+GGG | - | chr4.3:13418474-13418493 | None:intergenic | 20.0% |
| !! | TGAAACTAACAAAAAAAAAC+AGG | - | chr4.3:13419544-13419563 | None:intergenic | 20.0% |
| !! | TGAACAAATCAACTTAATTT+AGG | - | chr4.3:13419083-13419102 | None:intergenic | 20.0% |
| !! | TGAATAAATAAAACAGAAAC+TGG | - | chr4.3:13418748-13418767 | None:intergenic | 20.0% |
| !! | TGCATTAAATAGTTAGAAAA+AGG | - | chr4.3:13418475-13418494 | None:intergenic | 20.0% |
| !! | TTAAAAAAATTCAAACAGGT+CGG | - | chr4.3:13418685-13418704 | None:intergenic | 20.0% |
| !! | TTTAGTATAATTTGAAAGGA+TGG | + | chr4.3:13419991-13420010 | MS.gene53264:intron | 20.0% |
| !!! | AGAACAAGTTTTTAATCAAA+TGG | + | chr4.3:13419962-13419981 | MS.gene53264:intron | 20.0% |
| !!! | ATTTTTTTCTCTTCAATTTC+AGG | + | chr4.3:13417372-13417391 | MS.gene53264:intron | 20.0% |
| !!! | GTTTTTTTTTGTTAGTTTCA+TGG | + | chr4.3:13419544-13419563 | MS.gene53264:intron | 20.0% |
| !!! | TTAGTTCTATAAACCAATTT+TGG | - | chr4.3:13419517-13419536 | None:intergenic | 20.0% |
| !!! | TTTTTATCGCAATTTCAAAA+GGG | - | chr4.3:13419441-13419460 | None:intergenic | 20.0% |
| !!! | TTTTTTATCGCAATTTCAAA+AGG | - | chr4.3:13419442-13419461 | None:intergenic | 20.0% |
| ! | AAGATTTGAAAACAATTGAC+AGG | - | chr4.3:13420290-13420309 | None:intergenic | 25.0% |
| ! | AGAGAAAATACATTTCTTAG+AGG | - | chr4.3:13420691-13420710 | None:intergenic | 25.0% |
| ! | ATAAAGAAATGACTTTACAG+TGG | - | chr4.3:13419811-13419830 | None:intergenic | 25.0% |
| ! | ATAAAGCAGTCAAAACATAA+AGG | - | chr4.3:13420630-13420649 | None:intergenic | 25.0% |
| ! | ATATCTTTGTCCAAAATGTT+TGG | - | chr4.3:13420040-13420059 | None:intergenic | 25.0% |
| ! | ATATGATGATATGATCTCTT+GGG | + | chr4.3:13418145-13418164 | MS.gene53264:intron | 25.0% |
| ! | ATGAAATGAAACTTATCCAT+AGG | - | chr4.3:13419664-13419683 | None:intergenic | 25.0% |
| ! | ATGGTATGAAAGTAAACAAT+TGG | - | chr4.3:13417910-13417929 | None:intergenic | 25.0% |
| ! | CATAAGATTCATAGATAGAA+AGG | - | chr4.3:13417666-13417685 | None:intergenic | 25.0% |
| ! | GACTTAAAGTCATAACTATA+AGG | - | chr4.3:13419152-13419171 | None:intergenic | 25.0% |
| ! | TAAAAAAATTCAAACAGGTC+GGG | - | chr4.3:13418684-13418703 | None:intergenic | 25.0% |
| ! | TAAATAACCAATAACAGCAA+CGG | - | chr4.3:13419054-13419073 | None:intergenic | 25.0% |
| ! | TATATGATGATATGATCTCT+TGG | + | chr4.3:13418144-13418163 | MS.gene53264:intron | 25.0% |
| ! | TATGCATAAAAATCAACACT+CGG | - | chr4.3:13419229-13419248 | None:intergenic | 25.0% |
| ! | TATGCATTTGAAGGAATTAA+AGG | - | chr4.3:13419629-13419648 | None:intergenic | 25.0% |
| ! | TTAAAGTCATAACTATAAGG+TGG | - | chr4.3:13419149-13419168 | None:intergenic | 25.0% |
| ! | TTAGATGATTATGCATTTGA+AGG | - | chr4.3:13419638-13419657 | None:intergenic | 25.0% |
| ! | TTAGTGAAAGTGATGAATTA+GGG | - | chr4.3:13417340-13417359 | None:intergenic | 25.0% |
| ! | TTTACTAGTAATGACAAAGT+TGG | + | chr4.3:13420131-13420150 | MS.gene53264:intron | 25.0% |
| !! | TTTTACTCATACTGTAATGT+TGG | - | chr4.3:13418270-13418289 | None:intergenic | 25.0% |
| !!! | ACATTTCTAGATGATTGTTT+TGG | + | chr4.3:13418003-13418022 | MS.gene53264:intron | 25.0% |
| !!! | GAAATGTTGATAATTTGACT+GGG | + | chr4.3:13420542-13420561 | MS.gene53264:CDS | 25.0% |
| !!! | GAATTTTTTTAAAGCCTTTG+TGG | + | chr4.3:13418693-13418712 | MS.gene53264:intron | 25.0% |
| !!! | GGCTTTAAAAAAATTCAAAC+AGG | - | chr4.3:13418689-13418708 | None:intergenic | 25.0% |
| !!! | GTTGTATTTGCTATGATATA+TGG | + | chr4.3:13417978-13417997 | MS.gene53264:intron | 25.0% |
| !!! | TGTGTTTTTGTTTTGAATGT+TGG | + | chr4.3:13419484-13419503 | MS.gene53264:intron | 25.0% |
| !!! | TGTTTTTATTGTTTGGACTT+TGG | + | chr4.3:13418115-13418134 | MS.gene53264:intron | 25.0% |
| !!! | TTTTTTGTTAGTTTCATGGT+TGG | + | chr4.3:13419548-13419567 | MS.gene53264:intron | 25.0% |
| AATCAGAATATCTCAAGAGT+AGG | - | chr4.3:13421069-13421088 | None:intergenic | 30.0% | |
| AATGACTTTACAGTGGAAAA+AGG | - | chr4.3:13419804-13419823 | None:intergenic | 30.0% | |
| ACAATTCATGTTATGAGTTC+AGG | + | chr4.3:13419280-13419299 | MS.gene53264:intron | 30.0% | |
| ATAAAACTCATGCATTACCA+AGG | - | chr4.3:13419322-13419341 | None:intergenic | 30.0% | |
| ATGACTTTACAGTGGAAAAA+GGG | - | chr4.3:13419803-13419822 | None:intergenic | 30.0% | |
| ATGAGACGGAAACATAAAAA+TGG | - | chr4.3:13417929-13417948 | None:intergenic | 30.0% | |
| ATGCATAGCTAAAAAAAAGG+AGG | - | chr4.3:13420249-13420268 | None:intergenic | 30.0% | |
| ATGTCAATTTCAGATCTTCT+GGG | + | chr4.3:13420456-13420475 | MS.gene53264:intron | 30.0% | |
| ATTGCAAACATAGAGAAGTA+GGG | + | chr4.3:13418206-13418225 | MS.gene53264:intron | 30.0% | |
| CATAATCATCTAAAAGCCTA+TGG | + | chr4.3:13419645-13419664 | MS.gene53264:intron | 30.0% | |
| GAAATAGAAATCATATCACC+AGG | - | chr4.3:13420186-13420205 | None:intergenic | 30.0% | |
| GACTTGTGAAATTGAGTTAT+TGG | + | chr4.3:13419104-13419123 | MS.gene53264:intron | 30.0% | |
| GGCAAAAAGCAATAAATGTT+GGG | - | chr4.3:13418453-13418472 | None:intergenic | 30.0% | |
| GGCAATATGTATTCTTTCTT+GGG | + | chr4.3:13420563-13420582 | MS.gene53264:CDS | 30.0% | |
| GTCCAAACAATAAAAACATC+AGG | - | chr4.3:13418113-13418132 | None:intergenic | 30.0% | |
| GTGATGCATAGCTAAAAAAA+AGG | - | chr4.3:13420252-13420271 | None:intergenic | 30.0% | |
| GTTAGTGAAAGTGATGAATT+AGG | - | chr4.3:13417341-13417360 | None:intergenic | 30.0% | |
| GTTTACACAGAATCATGATT+GGG | + | chr4.3:13418578-13418597 | MS.gene53264:intron | 30.0% | |
| TACTCTTGAGATATTCTGAT+TGG | + | chr4.3:13421068-13421087 | MS.gene53264:intron | 30.0% | |
| TATGTCAATTTCAGATCTTC+TGG | + | chr4.3:13420455-13420474 | MS.gene53264:intron | 30.0% | |
| TCTTCTACTATTACTTCATC+AGG | + | chr4.3:13421149-13421168 | MS.gene53264:CDS | 30.0% | |
| TGTTTACACAGAATCATGAT+TGG | + | chr4.3:13418577-13418596 | MS.gene53264:intron | 30.0% | |
| ! | AACAATTGACAGGTTTTCTA+TGG | - | chr4.3:13420280-13420299 | None:intergenic | 30.0% |
| ! | AGTGTTTAAGCCAAACATTT+TGG | + | chr4.3:13420027-13420046 | MS.gene53264:intron | 30.0% |
| ! | ATAGCAAAGCATTCCAAAAT+AGG | - | chr4.3:13419357-13419376 | None:intergenic | 30.0% |
| ! | GTGGATTATACATTCTCAAT+TGG | + | chr4.3:13420953-13420972 | MS.gene53264:CDS | 30.0% |
| ! | GTTTTACGATTTTACTACCT+TGG | + | chr4.3:13419302-13419321 | MS.gene53264:intron | 30.0% |
| ! | TGTTGTTTATTTGGCTGAAT+TGG | + | chr4.3:13420753-13420772 | MS.gene53264:intron | 30.0% |
| ! | TTTGTTCAGCTTTCCTATTT+TGG | + | chr4.3:13419341-13419360 | MS.gene53264:intron | 30.0% |
| !! | AAAGGATTAGCTGAAAAAAC+AGG | + | chr4.3:13418306-13418325 | MS.gene53264:intron | 30.0% |
| !! | GATAATGACGAAAAGTATCA+AGG | - | chr4.3:13417578-13417597 | None:intergenic | 30.0% |
| !! | GGAAATGTTGATAATTTGAC+TGG | + | chr4.3:13420541-13420560 | MS.gene53264:CDS | 30.0% |
| !! | GTCCTGATGTTTTTATTGTT+TGG | + | chr4.3:13418108-13418127 | MS.gene53264:intron | 30.0% |
| !!! | AGATTCAGTTTTGAGATGAA+GGG | - | chr4.3:13418807-13418826 | None:intergenic | 30.0% |
| !!! | AGGATTTTGGTTGTAAAAAC+AGG | - | chr4.3:13418965-13418984 | None:intergenic | 30.0% |
| !!! | GGATTTTGGTTGTAAAAACA+GGG | - | chr4.3:13418964-13418983 | None:intergenic | 30.0% |
| AAAACAAGCAACAACAGAAG+AGG | - | chr4.3:13418985-13419004 | None:intergenic | 35.0% | |
| AAATACAACACATCCTCGAA+TGG | - | chr4.3:13417967-13417986 | None:intergenic | 35.0% | |
| AAATTCATGCCATCTTCTTC+TGG | + | chr4.3:13420095-13420114 | MS.gene53264:intron | 35.0% | |
| AAGCAGTCAAAACATAAAGG+TGG | - | chr4.3:13420627-13420646 | None:intergenic | 35.0% | |
| AATAGAATTCAGTACGGACA+GGG | - | chr4.3:13420334-13420353 | None:intergenic | 35.0% | |
| ACAAAAATAGAGCACAAGAG+AGG | - | chr4.3:13418861-13418880 | None:intergenic | 35.0% | |
| ACATTTCTTAGAGGACAATC+AGG | - | chr4.3:13420682-13420701 | None:intergenic | 35.0% | |
| ACGTTATTTGGATCTGTTCA+CGG | + | chr4.3:13417440-13417459 | MS.gene53264:CDS | 35.0% | |
| ATTGTGACCTGAACATGATT+TGG | - | chr4.3:13417296-13417315 | None:intergenic | 35.0% | |
| CAAAAATAGAGCACAAGAGA+GGG | - | chr4.3:13418860-13418879 | None:intergenic | 35.0% | |
| CATTGCAAACATAGAGAAGT+AGG | + | chr4.3:13418205-13418224 | MS.gene53264:intron | 35.0% | |
| CTTAAACACTGCATGATACT+TGG | - | chr4.3:13420017-13420036 | None:intergenic | 35.0% | |
| GCACGTAATAGAATTCAGTA+CGG | - | chr4.3:13420340-13420359 | None:intergenic | 35.0% | |
| GGGCAAAAAGCAATAAATGT+TGG | - | chr4.3:13418454-13418473 | None:intergenic | 35.0% | |
| GGGCAATATGTATTCTTTCT+TGG | + | chr4.3:13420562-13420581 | MS.gene53264:CDS | 35.0% | |
| GTGGGATAAAATGAATTTCC+TGG | + | chr4.3:13420165-13420184 | MS.gene53264:intron | 35.0% | |
| TAATAGAATTCAGTACGGAC+AGG | - | chr4.3:13420335-13420354 | None:intergenic | 35.0% | |
| TACTGAAATCGGAAAGAACA+TGG | - | chr4.3:13418649-13418668 | None:intergenic | 35.0% | |
| TAGGGATTGTGAAATGTGAA+GGG | - | chr4.3:13417322-13417341 | None:intergenic | 35.0% | |
| TCATAGCTTCTCTTAACCAT+AGG | - | chr4.3:13417549-13417568 | None:intergenic | 35.0% | |
| TCTTTCCGATTTCAGTAACT+GGG | + | chr4.3:13418652-13418671 | MS.gene53264:intron | 35.0% | |
| TGTGTTCTTAGCACGTTATT+TGG | + | chr4.3:13417428-13417447 | MS.gene53264:CDS | 35.0% | |
| TTAGGGATTGTGAAATGTGA+AGG | - | chr4.3:13417323-13417342 | None:intergenic | 35.0% | |
| TTCTATTTCCTTCTTCCGTA+TGG | + | chr4.3:13420197-13420216 | MS.gene53264:intron | 35.0% | |
| TTCTTTCCGATTTCAGTAAC+TGG | + | chr4.3:13418651-13418670 | MS.gene53264:intron | 35.0% | |
| TTGCAAACATAGAGAAGTAG+GGG | + | chr4.3:13418207-13418226 | MS.gene53264:intron | 35.0% | |
| ! | CTGGGCATTTTCAATATACT+TGG | + | chr4.3:13420474-13420493 | MS.gene53264:CDS | 35.0% |
| ! | GGCATTTTCAATATACTTGG+AGG | + | chr4.3:13420477-13420496 | MS.gene53264:CDS | 35.0% |
| !!! | AAGGGAATTGGTTTTTAGCA+AGG | - | chr4.3:13418789-13418808 | None:intergenic | 35.0% |
| !!! | AAGTGTTGGTGCTACATTTT+CGG | + | chr4.3:13417861-13417880 | MS.gene53264:intron | 35.0% |
| !!! | AGGGAATTGGTTTTTAGCAA+GGG | - | chr4.3:13418788-13418807 | None:intergenic | 35.0% |
| !!! | AGTTTTGAGATGAAGGGAAT+TGG | - | chr4.3:13418801-13418820 | None:intergenic | 35.0% |
| !!! | ATTTGGTAGCGTAGATTTTG+AGG | - | chr4.3:13417279-13417298 | None:intergenic | 35.0% |
| !!! | CAGATTCAGTTTTGAGATGA+AGG | - | chr4.3:13418808-13418827 | None:intergenic | 35.0% |
| !!! | CAGGAATTTTGTTTTGCAGT+TGG | + | chr4.3:13421235-13421254 | MS.gene53264:intron | 35.0% |
| !!! | CTGTTCTTTTCTAGAGTTCT+TGG | - | chr4.3:13419859-13419878 | None:intergenic | 35.0% |
| !!! | TTCTAGATGATTGTTTTGGC+TGG | + | chr4.3:13418007-13418026 | MS.gene53264:intron | 35.0% |
| ACGGACAGGGAATATATTCT+TGG | - | chr4.3:13420321-13420340 | None:intergenic | 40.0% | |
| AGGGATTGTGAAATGTGAAG+GGG | - | chr4.3:13417321-13417340 | None:intergenic | 40.0% | |
| AGTCTTCATTGCTAGTTCGT+TGG | + | chr4.3:13417497-13417516 | MS.gene53264:CDS | 40.0% | |
| ATAGATAGAAAGGGACCTCA+AGG | - | chr4.3:13417656-13417675 | None:intergenic | 40.0% | |
| ATTTGAGTGACGCTTAACCT+AGG | + | chr4.3:13418064-13418083 | MS.gene53264:intron | 40.0% | |
| CAGGGAATATATTCTTGGAC+AGG | - | chr4.3:13420316-13420335 | None:intergenic | 40.0% | |
| CTTCTCTATGTTTGCAATGC+AGG | - | chr4.3:13418204-13418223 | None:intergenic | 40.0% | |
| GTAAAAACAGGGTACAAGAG+AGG | - | chr4.3:13418953-13418972 | None:intergenic | 40.0% | |
| TACGCTACCAAATCATGTTC+AGG | + | chr4.3:13417286-13417305 | MS.gene53264:CDS | 40.0% | |
| TCGTACAAGTCTACGATTTC+TGG | + | chr4.3:13418537-13418556 | MS.gene53264:intron | 40.0% | |
| TCTGTCCCAGTTACTGAAAT+CGG | - | chr4.3:13418660-13418679 | None:intergenic | 40.0% | |
| TTAAATTGCAGTGCGTATCG+TGG | + | chr4.3:13420934-13420953 | MS.gene53264:intron | 40.0% | |
| TTTCATGGTTGGAGAGGAAT+GGG | + | chr4.3:13419559-13419578 | MS.gene53264:intron | 40.0% | |
| TTTCGCAGATGCAAATGAGA+CGG | - | chr4.3:13417943-13417962 | None:intergenic | 40.0% | |
| TTTGAGTGACGCTTAACCTA+GGG | + | chr4.3:13418065-13418084 | MS.gene53264:intron | 40.0% | |
| ! | ATTTTATCCCACACTGTGAG+CGG | - | chr4.3:13420157-13420176 | None:intergenic | 40.0% |
| ! | CTAGTTCGTTGGCTATTGTT+TGG | + | chr4.3:13417508-13417527 | MS.gene53264:CDS | 40.0% |
| ! | GCAACAACAGAAGAGGATTT+TGG | - | chr4.3:13418978-13418997 | None:intergenic | 40.0% |
| ! | TCTAACTCCGTTGCTGTTAT+TGG | + | chr4.3:13419044-13419063 | MS.gene53264:intron | 40.0% |
| ! | TGTTAGTTTCATGGTTGGAG+AGG | + | chr4.3:13419553-13419572 | MS.gene53264:intron | 40.0% |
| ! | TGTTGGAGCATCTCCAAAAT+TGG | + | chr4.3:13419501-13419520 | MS.gene53264:intron | 40.0% |
| !! | TCTTGGGCATTTTGTTTCGA+GGG | + | chr4.3:13418161-13418180 | MS.gene53264:intron | 40.0% |
| !!! | AGTGTTGGTGCTACATTTTC+GGG | + | chr4.3:13417862-13417881 | MS.gene53264:intron | 40.0% |
| AACGTGGCTCAGTCAAATAG+CGG | - | chr4.3:13420984-13421003 | None:intergenic | 45.0% | |
| AATCCATAACCCTGTTCCCT+AGG | - | chr4.3:13418084-13418103 | None:intergenic | 45.0% | |
| AGCAGATTCCATACGGAAGA+AGG | - | chr4.3:13420208-13420227 | None:intergenic | 45.0% | |
| ATAACCCTAGCCACCATTGT+TGG | - | chr4.3:13418236-13418255 | None:intergenic | 45.0% | |
| ATAGAAAGGGACCTCAAGGA+AGG | - | chr4.3:13417652-13417671 | None:intergenic | 45.0% | |
| ATGAACATCTTCAGACTCGC+CGG | + | chr4.3:13417217-13417236 | MS.gene53264:CDS | 45.0% | |
| CGAGAAATTCACCTTCCTTG+AGG | + | chr4.3:13417638-13417657 | MS.gene53264:CDS | 45.0% | |
| GAAGTAGGGGTAACCAACAA+TGG | + | chr4.3:13418220-13418239 | MS.gene53264:intron | 45.0% | |
| GAATTGCAGCCAGAAGAAGA+TGG | - | chr4.3:13420107-13420126 | None:intergenic | 45.0% | |
| GGAGACTGAACACTGTGATT+CGG | + | chr4.3:13419584-13419603 | MS.gene53264:intron | 45.0% | |
| GTAACCAACAATGGTGGCTA+GGG | + | chr4.3:13418229-13418248 | MS.gene53264:intron | 45.0% | |
| GTACAAGAGAGGATGTGTTC+TGG | - | chr4.3:13418942-13418961 | None:intergenic | 45.0% | |
| GTTTCATGGTTGGAGAGGAA+TGG | + | chr4.3:13419558-13419577 | MS.gene53264:intron | 45.0% | |
| TAACCTAGGGAACAGGGTTA+TGG | + | chr4.3:13418078-13418097 | MS.gene53264:intron | 45.0% | |
| TAACGAATGCTGCGTTGAAG+TGG | + | chr4.3:13420406-13420425 | MS.gene53264:intron | 45.0% | |
| TCGTTGCAACAAAACCAGCT+GGG | - | chr4.3:13420518-13420537 | None:intergenic | 45.0% | |
| TGACACTGACAGTTTGACAC+TGG | + | chr4.3:13417764-13417783 | MS.gene53264:intron | 45.0% | |
| TGTAGCACCAACACTTCTGA+TGG | - | chr4.3:13417857-13417876 | None:intergenic | 45.0% | |
| TTCGTTGCAACAAAACCAGC+TGG | - | chr4.3:13420519-13420538 | None:intergenic | 45.0% | |
| ! | CTTCTTCTGGCTGCAATTCA+TGG | + | chr4.3:13420108-13420127 | MS.gene53264:intron | 45.0% |
| !! | ACTGGTCTTATTGCCAAACC+AGG | - | chr4.3:13418730-13418749 | None:intergenic | 45.0% |
| !! | CTCTTGGGCATTTTGTTTCG+AGG | + | chr4.3:13418160-13418179 | MS.gene53264:intron | 45.0% |
| !! | TCTACGATTTCTGGAGTGCT+TGG | + | chr4.3:13418546-13418565 | MS.gene53264:intron | 45.0% |
| !! | TGGTAGCGTAGATTTTGAGG+AGG | - | chr4.3:13417276-13417295 | None:intergenic | 45.0% |
| !! | TGTTGCTGCTAGCTTTCTTC+TGG | + | chr4.3:13417602-13417621 | MS.gene53264:CDS | 45.0% |
| !!! | CTGGTTTTGTTGCAACGAAG+TGG | + | chr4.3:13420520-13420539 | MS.gene53264:CDS | 45.0% |
| AAGATCGCGTGAAATCGCTG+TGG | + | chr4.3:13418602-13418621 | MS.gene53264:intron | 50.0% | |
| AGGTCAGAGTTCAGCCACAA+AGG | - | chr4.3:13418710-13418729 | None:intergenic | 50.0% | |
| ATGGTTGGAGAGGAATGGGT+TGG | + | chr4.3:13419563-13419582 | MS.gene53264:intron | 50.0% | |
| CAGCTGCAGCAGATTCCATA+CGG | - | chr4.3:13420215-13420234 | None:intergenic | 50.0% | |
| CCACGTTTCACTCGATGGAT+AGG | + | chr4.3:13420997-13421016 | MS.gene53264:CDS | 50.0% | |
| CCTATCCATCGAGTGAAACG+TGG | - | chr4.3:13421000-13421019 | None:intergenic | 50.0% | |
| CGCGTAGAAGCAGAAGATGT+TGG | - | chr4.3:13418907-13418926 | None:intergenic | 50.0% | |
| CGTTGCAACAAAACCAGCTG+GGG | - | chr4.3:13420517-13420536 | None:intergenic | 50.0% | |
| CTGAACAACACCTGAGACAC+AGG | - | chr4.3:13421110-13421129 | None:intergenic | 50.0% | |
| GACGCTTAACCTAGGGAACA+GGG | + | chr4.3:13418072-13418091 | MS.gene53264:intron | 50.0% | |
| GAGGAGATGAGTCATGTCAC+CGG | - | chr4.3:13417239-13417258 | None:intergenic | 50.0% | |
| GGTAACCAACAATGGTGGCT+AGG | + | chr4.3:13418228-13418247 | MS.gene53264:intron | 50.0% | |
| GTAGGGGTAACCAACAATGG+TGG | + | chr4.3:13418223-13418242 | MS.gene53264:intron | 50.0% | |
| GTGCATGCGTGTTCATCCTA+TGG | + | chr4.3:13417530-13417549 | MS.gene53264:CDS | 50.0% | |
| TAGCAAGGGAAACGACGCAA+CGG | - | chr4.3:13418774-13418793 | None:intergenic | 50.0% | |
| TGACGCTTAACCTAGGGAAC+AGG | + | chr4.3:13418071-13418090 | MS.gene53264:intron | 50.0% | |
| TTTGTGGCTGAACTCTGACC+TGG | + | chr4.3:13418709-13418728 | MS.gene53264:intron | 50.0% | |
| ! | CACGCATCCATCAGAAGTGT+TGG | + | chr4.3:13417847-13417866 | MS.gene53264:intron | 50.0% |
| ! | CACTTCTGATGGATGCGTGT+TGG | - | chr4.3:13417846-13417865 | None:intergenic | 50.0% |
| ! | GTTTTTGCAGCCTGTGTCTC+AGG | + | chr4.3:13421097-13421116 | MS.gene53264:intron | 50.0% |
| AAAGTTGGCCGCTCACAGTG+TGG | + | chr4.3:13420146-13420165 | MS.gene53264:intron | 55.0% | |
| AAGTTGGCCGCTCACAGTGT+GGG | + | chr4.3:13420147-13420166 | MS.gene53264:intron | 55.0% | |
| AGCAAGGGAAACGACGCAAC+GGG | - | chr4.3:13418773-13418792 | None:intergenic | 55.0% | |
| AGTTGCAATACTGCCCCAGC+TGG | + | chr4.3:13420501-13420520 | MS.gene53264:CDS | 55.0% | |
| CTGAGCCACGTTTCACTCGA+TGG | + | chr4.3:13420992-13421011 | MS.gene53264:CDS | 55.0% | |
| GCATCTGCGAAAGCCATTCG+AGG | + | chr4.3:13417951-13417970 | MS.gene53264:intron | 55.0% | |
| GGAGGAGAACGAGAATGCTG+AGG | - | chr4.3:13417258-13417277 | None:intergenic | 55.0% | |
| GGCTGAACTCTGACCTGGTT+TGG | + | chr4.3:13418714-13418733 | MS.gene53264:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 13417217 | 13421290 | 13417217 | ID=MS.gene53264 |
| chr4.3 | mRNA | 13417217 | 13421290 | 13417217 | ID=MS.gene53264.t1;Parent=MS.gene53264 |
| chr4.3 | exon | 13417217 | 13417307 | 13417217 | ID=MS.gene53264.t1.exon1;Parent=MS.gene53264.t1 |
| chr4.3 | CDS | 13417217 | 13417307 | 13417217 | ID=cds.MS.gene53264.t1;Parent=MS.gene53264.t1 |
| chr4.3 | exon | 13417394 | 13417659 | 13417394 | ID=MS.gene53264.t1.exon2;Parent=MS.gene53264.t1 |
| chr4.3 | CDS | 13417394 | 13417659 | 13417394 | ID=cds.MS.gene53264.t1;Parent=MS.gene53264.t1 |
| chr4.3 | exon | 13420469 | 13420584 | 13420469 | ID=MS.gene53264.t1.exon3;Parent=MS.gene53264.t1 |
| chr4.3 | CDS | 13420469 | 13420584 | 13420469 | ID=cds.MS.gene53264.t1;Parent=MS.gene53264.t1 |
| chr4.3 | exon | 13420945 | 13421018 | 13420945 | ID=MS.gene53264.t1.exon4;Parent=MS.gene53264.t1 |
| chr4.3 | CDS | 13420945 | 13421018 | 13420945 | ID=cds.MS.gene53264.t1;Parent=MS.gene53264.t1 |
| chr4.3 | exon | 13421107 | 13421170 | 13421107 | ID=MS.gene53264.t1.exon5;Parent=MS.gene53264.t1 |
| chr4.3 | CDS | 13421107 | 13421170 | 13421107 | ID=cds.MS.gene53264.t1;Parent=MS.gene53264.t1 |
| chr4.3 | exon | 13421254 | 13421290 | 13421254 | ID=MS.gene53264.t1.exon6;Parent=MS.gene53264.t1 |
| chr4.3 | CDS | 13421254 | 13421290 | 13421254 | ID=cds.MS.gene53264.t1;Parent=MS.gene53264.t1 |
| Gene Sequence |
| Protein sequence |
