Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003399.t1 | XP_013456565.1 | 100 | 272 | 0 | 0 | 1 | 272 | 1 | 272 | 2.60E-148 | 534.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003399.t1 | Q09473 | 33.2 | 226 | 132 | 5 | 47 | 268 | 2 | 212 | 2.5e-27 | 124.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003399.t1 | I3SDS4 | 100.0 | 272 | 0 | 0 | 1 | 272 | 1 | 272 | 1.9e-148 | 534.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003399 | MS.gene28949 | PPI |
| MS.gene003399 | MS.gene27841 | PPI |
| MS.gene003399 | MS.gene052281 | PPI |
| MS.gene003399 | MS.gene53264 | PPI |
| MS.gene003399 | MS.gene53261 | PPI |
| MS.gene003399 | MS.gene023608 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003399.t1 | MTR_4g075550 | 100.000 | 272 | 0 | 0 | 1 | 272 | 1 | 272 | 0.0 | 555 |
| MS.gene003399.t1 | MTR_3g113920 | 83.088 | 272 | 46 | 0 | 1 | 272 | 1 | 272 | 1.49e-172 | 477 |
| MS.gene003399.t1 | MTR_8g012595 | 49.077 | 271 | 135 | 3 | 1 | 268 | 1 | 271 | 1.35e-84 | 254 |
| MS.gene003399.t1 | MTR_8g012605 | 50.206 | 243 | 119 | 2 | 1 | 241 | 1 | 243 | 2.88e-83 | 251 |
| MS.gene003399.t1 | MTR_8g012615 | 52.821 | 195 | 91 | 1 | 75 | 268 | 9 | 203 | 3.37e-71 | 218 |
| MS.gene003399.t1 | MTR_8g012600 | 41.007 | 139 | 82 | 0 | 4 | 142 | 5 | 143 | 2.30e-31 | 118 |
| MS.gene003399.t1 | MTR_7g056337 | 34.061 | 229 | 130 | 8 | 47 | 269 | 2 | 215 | 5.47e-26 | 102 |
| MS.gene003399.t1 | MTR_8g087430 | 35.965 | 228 | 127 | 9 | 47 | 269 | 2 | 215 | 1.85e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003399.t1 | AT2G21190 | 89.552 | 268 | 28 | 0 | 5 | 272 | 2 | 269 | 0.0 | 498 |
| MS.gene003399.t1 | AT4G38790 | 88.806 | 268 | 30 | 0 | 5 | 272 | 6 | 273 | 7.85e-179 | 493 |
| MS.gene003399.t1 | AT1G75760 | 85.662 | 272 | 39 | 0 | 1 | 272 | 1 | 272 | 7.41e-176 | 486 |
| MS.gene003399.t1 | AT1G19970 | 80.147 | 272 | 54 | 0 | 1 | 272 | 1 | 272 | 2.27e-169 | 469 |
| MS.gene003399.t1 | AT1G75760 | 85.547 | 256 | 37 | 0 | 1 | 256 | 1 | 256 | 6.51e-165 | 457 |
| MS.gene003399.t1 | AT1G75760 | 85.185 | 216 | 32 | 0 | 1 | 216 | 1 | 216 | 5.56e-137 | 385 |
| MS.gene003399.t1 | AT1G19970 | 75.983 | 229 | 51 | 1 | 1 | 229 | 1 | 225 | 5.22e-132 | 373 |
| MS.gene003399.t1 | AT3G25160 | 61.194 | 268 | 103 | 1 | 2 | 268 | 4 | 271 | 2.00e-121 | 348 |
| MS.gene003399.t1 | AT3G25040 | 34.934 | 229 | 128 | 9 | 47 | 269 | 2 | 215 | 2.61e-29 | 110 |
| MS.gene003399.t1 | AT1G29330 | 35.371 | 229 | 127 | 10 | 47 | 269 | 2 | 215 | 3.25e-28 | 107 |
| MS.gene003399.t1 | AT1G29330 | 35.172 | 145 | 81 | 5 | 125 | 269 | 22 | 153 | 8.89e-18 | 78.6 |
Find 68 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCTTGGGGTATGGTTTA+TGG | 0.172228 | 4.1:-28405808 | MS.gene003399:CDS |
| CTGTGCTCATTGGGTTCTTC+AGG | 0.282833 | 4.1:-28406369 | MS.gene003399:intron |
| CATTCACACCATACTTGATT+TGG | 0.298660 | 4.1:-28407552 | MS.gene003399:CDS |
| CTGGGCATTCTGTGTATATC+TGG | 0.298963 | 4.1:-28406595 | MS.gene003399:CDS |
| AAAATATAGCTGTCAATTCC+TGG | 0.317259 | 4.1:+28407615 | None:intergenic |
| GGACATTTGTTGGTTGCCTT+GGG | 0.362241 | 4.1:-28405821 | MS.gene003399:CDS |
| GATTCTTAAGCTGTGCTCAT+TGG | 0.373170 | 4.1:-28406379 | MS.gene003399:CDS |
| TGGACATTTGTTGGTTGCCT+TGG | 0.385662 | 4.1:-28405822 | MS.gene003399:CDS |
| ATTCTTAAGCTGTGCTCATT+GGG | 0.386910 | 4.1:-28406378 | MS.gene003399:CDS |
| GCGAGAAAAGCCTTGACCTT+TGG | 0.406284 | 4.1:+28408238 | None:intergenic |
| CTTCTCATCATATATTGAAC+AGG | 0.417454 | 4.1:-28406623 | MS.gene003399:CDS |
| GAAAGTCGCCAAATCAAGTA+TGG | 0.428500 | 4.1:+28407544 | None:intergenic |
| TTGTTGGTTGCCTTGGGGTA+TGG | 0.433590 | 4.1:-28405815 | MS.gene003399:CDS |
| GCTGAAGCTGTTCACTCGCT+TGG | 0.434191 | 4.1:-28408142 | MS.gene003399:CDS |
| AGATACCCGTGGACATTTGT+TGG | 0.440531 | 4.1:-28405831 | MS.gene003399:CDS |
| AATCTGCTAAGATGAATGTT+TGG | 0.442427 | 4.1:+28405756 | None:intergenic |
| CTTGTTCTACGCCTTCCCTC+TGG | 0.447485 | 4.1:-28405579 | MS.gene003399:CDS |
| CGTGATCATGAACGATAAAT+CGG | 0.455398 | 4.1:+28408182 | None:intergenic |
| AGAAAAGCCTTGACCTTTGG+TGG | 0.458499 | 4.1:+28408241 | None:intergenic |
| GCGTGGATCGATGTTCTTTG+AGG | 0.459043 | 4.1:+28408289 | None:intergenic |
| TCTCGCCGTCGTTTCCGGTA+TGG | 0.465041 | 4.1:-28408221 | MS.gene003399:CDS |
| ACGCCATCTCCACATGGGTC+AGG | 0.477787 | 4.1:-28408270 | MS.gene003399:CDS |
| TGTTCTGCATGACCCGCAGT+TGG | 0.489763 | 4.1:+28406553 | None:intergenic |
| GTTCTGCATGACCCGCAGTT+GGG | 0.500169 | 4.1:+28406554 | None:intergenic |
| GAGAACAAGAGCGGCCATAC+CGG | 0.503947 | 4.1:+28408207 | None:intergenic |
| ATGAAGGAGAAGACTTGTGC+TGG | 0.507531 | 4.1:-28408094 | MS.gene003399:intron |
| TAAATTGAAGGCGAGTTACA+TGG | 0.511519 | 4.1:-28407486 | MS.gene003399:CDS |
| GACTTTCGTGACCACGGTGT+GGG | 0.516892 | 4.1:-28407528 | MS.gene003399:CDS |
| TCGCCTGACCCATGTGGAGA+TGG | 0.520457 | 4.1:+28408267 | None:intergenic |
| GTATGGTTTATGGCCGTCGA+TGG | 0.522435 | 4.1:-28405798 | MS.gene003399:CDS |
| TAACTTTGCAATTTACTATG+TGG | 0.522735 | 4.1:-28407453 | MS.gene003399:intron |
| AATATATGATGAGAAGTTGA+CGG | 0.524695 | 4.1:+28406630 | None:intergenic |
| TCTGTTACTATTATGTCAAG+AGG | 0.527285 | 4.1:-28405733 | MS.gene003399:intron |
| AAATATAGCTGTCAATTCCT+GGG | 0.533077 | 4.1:+28407616 | None:intergenic |
| CGATCCACGCCATCTCCACA+TGG | 0.539860 | 4.1:-28408276 | MS.gene003399:CDS |
| CGACTTTCGTGACCACGGTG+TGG | 0.547169 | 4.1:-28407529 | MS.gene003399:CDS |
| GGCGAGTTACATGGAGGAGA+AGG | 0.550641 | 4.1:-28407477 | MS.gene003399:CDS |
| AATACGTAATGAGCAGTGAA+TGG | 0.555239 | 4.1:+28406419 | None:intergenic |
| TTCAGTTCTACCCCAACTGC+GGG | 0.557419 | 4.1:-28406565 | MS.gene003399:CDS |
| TTCTGCATGACCCGCAGTTG+GGG | 0.562015 | 4.1:+28406555 | None:intergenic |
| AGGATTATCACTCAAATCCC+AGG | 0.579664 | 4.1:-28407633 | MS.gene003399:CDS |
| AGCAAGGCTAACACGGCACA+TGG | 0.585861 | 4.1:+28406660 | None:intergenic |
| AGCGGCCATACCGGAAACGA+CGG | 0.593225 | 4.1:+28408216 | None:intergenic |
| ATGAATGAGCAAGGCTAACA+CGG | 0.594104 | 4.1:+28406653 | None:intergenic |
| TTTCAGTTCTACCCCAACTG+CGG | 0.594339 | 4.1:-28406566 | MS.gene003399:CDS |
| GCTCATTACGTATTTGCACT+CGG | 0.595466 | 4.1:-28406410 | MS.gene003399:CDS |
| TCTTATCTATAAACTCATGA+AGG | 0.599329 | 4.1:-28408110 | MS.gene003399:CDS |
| TGCAATCACACCACTCCAGA+GGG | 0.600263 | 4.1:+28405564 | None:intergenic |
| GGCAACCAACAAATGTCCAC+GGG | 0.610059 | 4.1:+28405826 | None:intergenic |
| TGACCCATGTGGAGATGGCG+TGG | 0.610245 | 4.1:+28408272 | None:intergenic |
| AGGCAACCAACAAATGTCCA+CGG | 0.615244 | 4.1:+28405825 | None:intergenic |
| GCGACAACCACCAAAGGTCA+AGG | 0.619702 | 4.1:-28408248 | MS.gene003399:CDS |
| TCTACGCCTTCCCTCTGGAG+TGG | 0.628133 | 4.1:-28405574 | MS.gene003399:CDS |
| GGTCAGGCGACAACCACCAA+AGG | 0.628509 | 4.1:-28408254 | MS.gene003399:CDS |
| ATCACACCACTCCAGAGGGA+AGG | 0.629698 | 4.1:+28405568 | None:intergenic |
| GACATTTGTTGGTTGCCTTG+GGG | 0.633865 | 4.1:-28405820 | MS.gene003399:CDS |
| AGTTGACGGATGAATGAGCA+AGG | 0.651719 | 4.1:+28406644 | None:intergenic |
| CTGCAATCACACCACTCCAG+AGG | 0.651756 | 4.1:+28405563 | None:intergenic |
| TTTGGCGACTTTCGTGACCA+CGG | 0.658314 | 4.1:-28407534 | MS.gene003399:CDS |
| CGGCCATAAACCATACCCCA+AGG | 0.668614 | 4.1:+28405805 | None:intergenic |
| GATCCACGCCATCTCCACAT+GGG | 0.685742 | 4.1:-28408275 | MS.gene003399:CDS |
| GATCATGAACGATAAATCGG+AGG | 0.692285 | 4.1:+28408185 | None:intergenic |
| TCTGAGATAAGAACCATCGA+CGG | 0.702119 | 4.1:+28405785 | None:intergenic |
| AAATCGGAGGAGAACAAGAG+CGG | 0.713382 | 4.1:+28408198 | None:intergenic |
| ATTGAAGGCGAGTTACATGG+AGG | 0.718937 | 4.1:-28407483 | MS.gene003399:CDS |
| TGGTTGTCGCCTGACCCATG+TGG | 0.729979 | 4.1:+28408261 | None:intergenic |
| GCGGGTCATGCAGAACACCA+AGG | 0.742034 | 4.1:-28406547 | MS.gene003399:intron |
| CATGTATATAACCCACACCG+TGG | 0.775290 | 4.1:+28407517 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAGTAAAAACAAATT+AGG | + | chr4.1:28408168-28408187 | None:intergenic | 10.0% |
| !!! | AAAGAATTGATTTTTTTTTT+TGG | - | chr4.1:28405826-28405845 | MS.gene003399:CDS | 10.0% |
| !!! | AAGAATTGATTTTTTTTTTT+GGG | - | chr4.1:28405827-28405846 | MS.gene003399:CDS | 10.0% |
| !!! | ATATATTTTTCTTTTGAAAA+TGG | - | chr4.1:28407169-28407188 | MS.gene003399:intron | 10.0% |
| !! | AATAATATGATTATGAAATC+TGG | - | chr4.1:28406750-28406769 | MS.gene003399:intron | 15.0% |
| !! | ACACAAAAATATTATTGATA+AGG | + | chr4.1:28406479-28406498 | None:intergenic | 15.0% |
| !! | GCAATTAAATAAATATCATT+AGG | + | chr4.1:28408247-28408266 | None:intergenic | 15.0% |
| !! | TGATTGATAAAACATAAAAA+GGG | + | chr4.1:28405919-28405938 | None:intergenic | 15.0% |
| !! | TTGATTGATAAAACATAAAA+AGG | + | chr4.1:28405920-28405939 | None:intergenic | 15.0% |
| !!! | ATGAAAAAGATCAATTTTTT+GGG | - | chr4.1:28406005-28406024 | MS.gene003399:intron | 15.0% |
| !! | AAAAAACATAAGACATTACA+TGG | - | chr4.1:28405979-28405998 | MS.gene003399:intron | 20.0% |
| !! | AAAAACATAAGACATTACAT+GGG | - | chr4.1:28405980-28405999 | MS.gene003399:intron | 20.0% |
| !! | AAAATATATCAAGCTGATAA+TGG | + | chr4.1:28407158-28407177 | None:intergenic | 20.0% |
| !! | AGAACAAATAGTTAAAGAAT+CGG | + | chr4.1:28406673-28406692 | None:intergenic | 20.0% |
| !! | GATTGATAAAACATAAAAAG+GGG | + | chr4.1:28405918-28405937 | None:intergenic | 20.0% |
| !!! | CAATAATATTTTTGTGTCAA+TGG | - | chr4.1:28406482-28406501 | MS.gene003399:intron | 20.0% |
| !!! | CATGAAAAAGATCAATTTTT+TGG | - | chr4.1:28406004-28406023 | MS.gene003399:intron | 20.0% |
| !!! | CATTTTTTCCTACTTTTTTA+TGG | - | chr4.1:28406510-28406529 | MS.gene003399:intron | 20.0% |
| !!! | TCTTTTTTTGTAAAATCGAA+GGG | + | chr4.1:28405811-28405830 | None:intergenic | 20.0% |
| !!! | TTATTTAATTGCAGTGTTTT+CGG | - | chr4.1:28408255-28408274 | MS.gene003399:CDS | 20.0% |
| !!! | TTCTTTTTTTGTAAAATCGA+AGG | + | chr4.1:28405812-28405831 | None:intergenic | 20.0% |
| !!! | TTGAATCTTTTTGTTTTCTT+GGG | - | chr4.1:28405863-28405882 | MS.gene003399:intron | 20.0% |
| !!! | TTTGAATCTTTTTGTTTTCT+TGG | - | chr4.1:28405862-28405881 | MS.gene003399:intron | 20.0% |
| ! | AAGGCAATGCTTATAAATTT+AGG | + | chr4.1:28406460-28406479 | None:intergenic | 25.0% |
| ! | AATATATGATGAGAAGTTGA+CGG | + | chr4.1:28407237-28407256 | None:intergenic | 25.0% |
| ! | AATCATATTATTCATGCAGA+AGG | + | chr4.1:28406742-28406761 | None:intergenic | 25.0% |
| ! | ACAAAATGAAACAATTCAGA+AGG | + | chr4.1:28407408-28407427 | None:intergenic | 25.0% |
| ! | AGAAATAGTATGTTAGTAGA+AGG | + | chr4.1:28408000-28408019 | None:intergenic | 25.0% |
| ! | ATTGTTATGAATGATGTAAC+AGG | - | chr4.1:28406211-28406230 | MS.gene003399:intron | 25.0% |
| ! | CATCTTTACCATAAAAAAGT+AGG | + | chr4.1:28406521-28406540 | None:intergenic | 25.0% |
| ! | GAAATATCTTAAGTCACTAT+CGG | + | chr4.1:28408202-28408221 | None:intergenic | 25.0% |
| ! | GATGCAATCATATTTGAATA+CGG | - | chr4.1:28407004-28407023 | MS.gene003399:intron | 25.0% |
| ! | GTTAGTTATAAATTTGCAAC+TGG | + | chr4.1:28407564-28407583 | None:intergenic | 25.0% |
| ! | TAAATTATTCCTCTTCCTAA+AGG | - | chr4.1:28407086-28407105 | MS.gene003399:intron | 25.0% |
| ! | TAACTTTGCAATTTACTATG+TGG | - | chr4.1:28406411-28406430 | MS.gene003399:CDS | 25.0% |
| ! | TAATTAGGAGATTACAGATT+CGG | + | chr4.1:28407826-28407845 | None:intergenic | 25.0% |
| ! | TATTCAAATATGATTGCATC+AGG | + | chr4.1:28407004-28407023 | None:intergenic | 25.0% |
| ! | TCTTATCTATAAACTCATGA+AGG | - | chr4.1:28405754-28405773 | MS.gene003399:CDS | 25.0% |
| !! | ATATATTGAACAGGATTTTC+TGG | - | chr4.1:28407250-28407269 | MS.gene003399:intron | 25.0% |
| !! | TATATTGAACAGGATTTTCT+GGG | - | chr4.1:28407251-28407270 | MS.gene003399:intron | 25.0% |
| !! | TTTAGGATGAAACAAACAAT+TGG | + | chr4.1:28406443-28406462 | None:intergenic | 25.0% |
| !!! | CATGATTCGTTTTAAATTGA+AGG | - | chr4.1:28406366-28406385 | MS.gene003399:intron | 25.0% |
| !!! | CTTTTTTTGTAAAATCGAAG+GGG | + | chr4.1:28405810-28405829 | None:intergenic | 25.0% |
| !!! | TTGATTTTGTGACTTTTTTC+TGG | - | chr4.1:28407110-28407129 | MS.gene003399:intron | 25.0% |
| !!! | TTGGCTTAATGTGTTATTTT+TGG | - | chr4.1:28406128-28406147 | MS.gene003399:intron | 25.0% |
| !!! | TTTTTTTGTAAAATCGAAGG+GGG | + | chr4.1:28405809-28405828 | None:intergenic | 25.0% |
| AAAATACTAACCTGCAACAT+TGG | - | chr4.1:28406837-28406856 | MS.gene003399:intron | 30.0% | |
| AAAATATAGCTGTCAATTCC+TGG | + | chr4.1:28406252-28406271 | None:intergenic | 30.0% | |
| AAATATAGCTGTCAATTCCT+GGG | + | chr4.1:28406251-28406270 | None:intergenic | 30.0% | |
| AATCTGCTAAGATGAATGTT+TGG | + | chr4.1:28408111-28408130 | None:intergenic | 30.0% | |
| AATTAGGAGATTACAGATTC+GGG | + | chr4.1:28407825-28407844 | None:intergenic | 30.0% | |
| ATACTATTCAGTATTTACCC+AGG | + | chr4.1:28406789-28406808 | None:intergenic | 30.0% | |
| ATGCAGAAGGAAATTTGAAT+CGG | + | chr4.1:28406729-28406748 | None:intergenic | 30.0% | |
| ATGTCCATCATCTAATGTAT+GGG | - | chr4.1:28407364-28407383 | MS.gene003399:intron | 30.0% | |
| ATTGCCCTTAAAAACTTACA+TGG | - | chr4.1:28406063-28406082 | MS.gene003399:intron | 30.0% | |
| CTTCTCATCATATATTGAAC+AGG | - | chr4.1:28407241-28407260 | MS.gene003399:intron | 30.0% | |
| GGCGTTAAAAATTTATACCT+TGG | + | chr4.1:28407337-28407356 | None:intergenic | 30.0% | |
| TATGTCCATCATCTAATGTA+TGG | - | chr4.1:28407363-28407382 | MS.gene003399:intron | 30.0% | |
| TATTTACCCAGGTTATTCTA+TGG | + | chr4.1:28406778-28406797 | None:intergenic | 30.0% | |
| TCTGTTACTATTATGTCAAG+AGG | - | chr4.1:28408131-28408150 | MS.gene003399:CDS | 30.0% | |
| TGTTACAATGTTTGTGTCTT+TGG | - | chr4.1:28407864-28407883 | MS.gene003399:intron | 30.0% | |
| TTCTTGGGTCTTTGTTAATT+GGG | - | chr4.1:28405878-28405897 | MS.gene003399:intron | 30.0% | |
| TTGCCCTTAAAAACTTACAT+GGG | - | chr4.1:28406064-28406083 | MS.gene003399:intron | 30.0% | |
| TTTCTTGGGTCTTTGTTAAT+TGG | - | chr4.1:28405877-28405896 | MS.gene003399:intron | 30.0% | |
| ! | AACATACTATTTCTTGCATC+AGG | - | chr4.1:28408006-28408025 | MS.gene003399:intron | 30.0% |
| ! | ACATCTTATTGATAGTCATC+TGG | - | chr4.1:28407901-28407920 | MS.gene003399:intron | 30.0% |
| ! | AGGTATAAATTTTTAACGCC+AGG | - | chr4.1:28407337-28407356 | MS.gene003399:intron | 30.0% |
| ! | CATCTTATTGATAGTCATCT+GGG | - | chr4.1:28407902-28407921 | MS.gene003399:intron | 30.0% |
| ! | TAAATTTGCAACTGGATTAG+AGG | + | chr4.1:28407556-28407575 | None:intergenic | 30.0% |
| ! | TGACCCATGTAAGTTTTTAA+GGG | + | chr4.1:28406070-28406089 | None:intergenic | 30.0% |
| !! | ATATATCAAGCTGATAATGG+TGG | + | chr4.1:28407155-28407174 | None:intergenic | 30.0% |
| !! | ATTTGATTTGTGTTTGTGGT+TGG | - | chr4.1:28406109-28406128 | MS.gene003399:intron | 30.0% |
| !! | GCTAATTTGATTTGTGTTTG+TGG | - | chr4.1:28406105-28406124 | MS.gene003399:intron | 30.0% |
| !! | TTTCTTTTGAAAATGGTTGC+AGG | - | chr4.1:28407176-28407195 | MS.gene003399:intron | 30.0% |
| !!! | ACAGCTAAGCCATTTTTTAA+AGG | - | chr4.1:28407678-28407697 | MS.gene003399:intron | 30.0% |
| !!! | CAGCTATATTTTTAGCTGTT+AGG | - | chr4.1:28406260-28406279 | MS.gene003399:intron | 30.0% |
| !!! | TGATTGCATCAGGTTTTATT+TGG | + | chr4.1:28406994-28407013 | None:intergenic | 30.0% |
| AAAAGAAGAGGGGGTTTAAA+AGG | + | chr4.1:28407034-28407053 | None:intergenic | 35.0% | |
| AATACGTAATGAGCAGTGAA+TGG | + | chr4.1:28407448-28407467 | None:intergenic | 35.0% | |
| AGATCCCATACATTAGATGA+TGG | + | chr4.1:28407371-28407390 | None:intergenic | 35.0% | |
| AGTACAGGACTAAAAGAAGA+GGG | + | chr4.1:28407045-28407064 | None:intergenic | 35.0% | |
| AGTCACAAAATCAAGCCTTT+AGG | + | chr4.1:28407104-28407123 | None:intergenic | 35.0% | |
| ATATCATTAGGACAACAGCA+CGG | + | chr4.1:28408235-28408254 | None:intergenic | 35.0% | |
| ATATTCCACTCCTTGATCAA+CGG | + | chr4.1:28407607-28407626 | None:intergenic | 35.0% | |
| ATTCTTAAGCTGTGCTCATT+GGG | - | chr4.1:28407486-28407505 | MS.gene003399:CDS | 35.0% | |
| CATTCACACCATACTTGATT+TGG | - | chr4.1:28406312-28406331 | MS.gene003399:intron | 35.0% | |
| CGTGATCATGAACGATAAAT+CGG | + | chr4.1:28405685-28405704 | None:intergenic | 35.0% | |
| CTTAAAAACTTACATGGGTC+AGG | - | chr4.1:28406069-28406088 | MS.gene003399:intron | 35.0% | |
| GACACAAACATTGTAACAGA+TGG | + | chr4.1:28407862-28407881 | None:intergenic | 35.0% | |
| GTAGTCTACAATAGACAACA+CGG | - | chr4.1:28407759-28407778 | MS.gene003399:intron | 35.0% | |
| TAAATTGAAGGCGAGTTACA+TGG | - | chr4.1:28406378-28406397 | MS.gene003399:CDS | 35.0% | |
| TAAGGGCAATGCAATCTAAA+GGG | + | chr4.1:28406053-28406072 | None:intergenic | 35.0% | |
| TATCTTTCGCATTACAGACA+AGG | + | chr4.1:28407790-28407809 | None:intergenic | 35.0% | |
| TTAAGGGCAATGCAATCTAA+AGG | + | chr4.1:28406054-28406073 | None:intergenic | 35.0% | |
| ! | AAAATCAAGCCTTTAGGAAG+AGG | + | chr4.1:28407098-28407117 | None:intergenic | 35.0% |
| ! | CACAGGTTGCCTTTAAAAAA+TGG | + | chr4.1:28407690-28407709 | None:intergenic | 35.0% |
| ! | CTGACCCATGTAAGTTTTTA+AGG | + | chr4.1:28406071-28406090 | None:intergenic | 35.0% |
| ! | TAAGAATATGCAGAGAGTAC+AGG | + | chr4.1:28407060-28407079 | None:intergenic | 35.0% |
| ! | TTTAATTGCAGTGTTTTCGG+AGG | - | chr4.1:28408258-28408277 | MS.gene003399:CDS | 35.0% |
| !! | TTATTTGGTGATGTGTCACT+TGG | + | chr4.1:28406979-28406998 | None:intergenic | 35.0% |
| !!! | GCTGTATTGTAGTTTTGTCA+TGG | - | chr4.1:28406282-28406301 | MS.gene003399:intron | 35.0% |
| AGACTACAACACATGCACAA+TGG | + | chr4.1:28407746-28407765 | None:intergenic | 40.0% | |
| AGGATTATCACTCAAATCCC+AGG | - | chr4.1:28406231-28406250 | MS.gene003399:intron | 40.0% | |
| AGGTTACAAAACCAGAGAGT+TGG | + | chr4.1:28407952-28407971 | None:intergenic | 40.0% | |
| ATATGCCTGCATACTAGAGT+AGG | - | chr4.1:28406893-28406912 | MS.gene003399:intron | 40.0% | |
| ATGAATGAGCAAGGCTAACA+CGG | + | chr4.1:28407214-28407233 | None:intergenic | 40.0% | |
| CAGCATGCACATGATTTACT+AGG | - | chr4.1:28406933-28406952 | MS.gene003399:intron | 40.0% | |
| CTGGATCCATAGAATAACCT+GGG | - | chr4.1:28406769-28406788 | MS.gene003399:intron | 40.0% | |
| GAAAGTCGCCAAATCAAGTA+TGG | + | chr4.1:28406323-28406342 | None:intergenic | 40.0% | |
| GACTACAACACATGCACAAT+GGG | + | chr4.1:28407745-28407764 | None:intergenic | 40.0% | |
| GAGTACAGGACTAAAAGAAG+AGG | + | chr4.1:28407046-28407065 | None:intergenic | 40.0% | |
| GATCATGAACGATAAATCGG+AGG | + | chr4.1:28405682-28405701 | None:intergenic | 40.0% | |
| GATTCTTAAGCTGTGCTCAT+TGG | - | chr4.1:28407485-28407504 | MS.gene003399:CDS | 40.0% | |
| GCTCATTACGTATTTGCACT+CGG | - | chr4.1:28407454-28407473 | MS.gene003399:CDS | 40.0% | |
| GGAGTTGCTGTCATGTAATT+AGG | + | chr4.1:28407841-28407860 | None:intergenic | 40.0% | |
| GGGAAAGACGACTCAAAAAA+TGG | + | chr4.1:28407586-28407605 | None:intergenic | 40.0% | |
| GTACAGGACTAAAAGAAGAG+GGG | + | chr4.1:28407044-28407063 | None:intergenic | 40.0% | |
| TACAGGACTAAAAGAAGAGG+GGG | + | chr4.1:28407043-28407062 | None:intergenic | 40.0% | |
| TATGCCTGCATACTAGAGTA+GGG | - | chr4.1:28406894-28406913 | MS.gene003399:intron | 40.0% | |
| TATTCCACTCCTTGATCAAC+GGG | + | chr4.1:28407606-28407625 | None:intergenic | 40.0% | |
| TCTGGATCCATAGAATAACC+TGG | - | chr4.1:28406768-28406787 | MS.gene003399:intron | 40.0% | |
| TGGGTCTTTGTTAATTGGGT+AGG | - | chr4.1:28405882-28405901 | MS.gene003399:intron | 40.0% | |
| TGTATACTACCATTGCACAC+AGG | + | chr4.1:28406626-28406645 | None:intergenic | 40.0% | |
| TGTTAGTAGAAGGAGACATG+CGG | + | chr4.1:28407990-28408009 | None:intergenic | 40.0% | |
| ! | TCTGAGATAAGAACCATCGA+CGG | + | chr4.1:28408082-28408101 | None:intergenic | 40.0% |
| !! | ATCAAGCTGATAATGGTGGA+AGG | + | chr4.1:28407151-28407170 | None:intergenic | 40.0% |
| !! | CTTGGTTCTATTGCAAGAAG+AGG | + | chr4.1:28406961-28406980 | None:intergenic | 40.0% |
| !! | TAGATGATGGACATAGATCC+TGG | + | chr4.1:28407358-28407377 | None:intergenic | 40.0% |
| !!! | CTCTGGTTTTGTAACCTTCT+TGG | - | chr4.1:28407955-28407974 | MS.gene003399:intron | 40.0% |
| AAATCGGAGGAGAACAAGAG+CGG | + | chr4.1:28405669-28405688 | None:intergenic | 45.0% | |
| AGAAAAGCCTTGACCTTTGG+TGG | + | chr4.1:28405626-28405645 | None:intergenic | 45.0% | |
| AGATACCCGTGGACATTTGT+TGG | - | chr4.1:28408033-28408052 | MS.gene003399:intron | 45.0% | |
| AGGCAACCAACAAATGTCCA+CGG | + | chr4.1:28408042-28408061 | None:intergenic | 45.0% | |
| ATAAGCGCAACCAATGTTGC+AGG | + | chr4.1:28406850-28406869 | None:intergenic | 45.0% | |
| ATGAAGGAGAAGACTTGTGC+TGG | - | chr4.1:28405770-28405789 | MS.gene003399:CDS | 45.0% | |
| ATGGGTCAGGAGAAATCACA+TGG | - | chr4.1:28406082-28406101 | MS.gene003399:intron | 45.0% | |
| ATTGAAGGCGAGTTACATGG+AGG | - | chr4.1:28406381-28406400 | MS.gene003399:CDS | 45.0% | |
| CATGTATATAACCCACACCG+TGG | + | chr4.1:28406350-28406369 | None:intergenic | 45.0% | |
| CTGGGCATTCTGTGTATATC+TGG | - | chr4.1:28407269-28407288 | MS.gene003399:intron | 45.0% | |
| GATATGTCACCTGTGTGCAA+TGG | - | chr4.1:28406614-28406633 | MS.gene003399:CDS | 45.0% | |
| TGCATACTAGAGTAGGGTCT+GGG | - | chr4.1:28406900-28406919 | MS.gene003399:intron | 45.0% | |
| TGCGGTTACAGAATCCAAGA+AGG | + | chr4.1:28407972-28407991 | None:intergenic | 45.0% | |
| TGGGTCAGGAGAAATCACAT+GGG | - | chr4.1:28406083-28406102 | MS.gene003399:intron | 45.0% | |
| TTGCCTTGGGGTATGGTTTA+TGG | - | chr4.1:28408056-28408075 | MS.gene003399:intron | 45.0% | |
| TTTCAGTTCTACCCCAACTG+CGG | - | chr4.1:28407298-28407317 | MS.gene003399:intron | 45.0% | |
| ! | AAAGCTCTTGCCATTTGGTG+AGG | - | chr4.1:28407714-28407733 | MS.gene003399:intron | 45.0% |
| ! | AGTTGACGGATGAATGAGCA+AGG | + | chr4.1:28407223-28407242 | None:intergenic | 45.0% |
| ! | CAACACATGCACAATGGGTT+TGG | + | chr4.1:28407740-28407759 | None:intergenic | 45.0% |
| ! | GACATTTGTTGGTTGCCTTG+GGG | - | chr4.1:28408044-28408063 | MS.gene003399:intron | 45.0% |
| ! | GGACATTTGTTGGTTGCCTT+GGG | - | chr4.1:28408043-28408062 | MS.gene003399:intron | 45.0% |
| ! | TGGACATTTGTTGGTTGCCT+TGG | - | chr4.1:28408042-28408061 | MS.gene003399:intron | 45.0% |
| !! | GCTCTAAAGCTCTTGCCATT+TGG | - | chr4.1:28407709-28407728 | MS.gene003399:intron | 45.0% |
| !!! | CATCAGGTTTTAGATACCCG+TGG | - | chr4.1:28408022-28408041 | MS.gene003399:intron | 45.0% |
| !!! | CTGTTTTTGCACCAACTCTC+TGG | - | chr4.1:28407938-28407957 | MS.gene003399:intron | 45.0% |
| ATGGGTTTGGCCTCACCAAA+TGG | + | chr4.1:28407727-28407746 | None:intergenic | 50.0% | |
| CAGACCCTACTCTAGTATGC+AGG | + | chr4.1:28406901-28406920 | None:intergenic | 50.0% | |
| CTGCATACTAGAGTAGGGTC+TGG | - | chr4.1:28406899-28406918 | MS.gene003399:intron | 50.0% | |
| CTGTGCTCATTGGGTTCTTC+AGG | - | chr4.1:28407495-28407514 | MS.gene003399:CDS | 50.0% | |
| CTTTCCCGTTGATCAAGGAG+TGG | - | chr4.1:28407599-28407618 | MS.gene003399:CDS | 50.0% | |
| GCATACTAGAGTAGGGTCTG+GGG | - | chr4.1:28406901-28406920 | MS.gene003399:intron | 50.0% | |
| GCGAGAAAAGCCTTGACCTT+TGG | + | chr4.1:28405629-28405648 | None:intergenic | 50.0% | |
| GCGTGGATCGATGTTCTTTG+AGG | + | chr4.1:28405578-28405597 | None:intergenic | 50.0% | |
| GGCAACCAACAAATGTCCAC+GGG | + | chr4.1:28408041-28408060 | None:intergenic | 50.0% | |
| GTATGGTTTATGGCCGTCGA+TGG | - | chr4.1:28408066-28408085 | MS.gene003399:intron | 50.0% | |
| GTCGTCTTTCCCGTTGATCA+AGG | - | chr4.1:28407594-28407613 | MS.gene003399:CDS | 50.0% | |
| TAGGACAACAGCACGGAGTA+AGG | + | chr4.1:28408228-28408247 | None:intergenic | 50.0% | |
| TTCAGTTCTACCCCAACTGC+GGG | - | chr4.1:28407299-28407318 | MS.gene003399:intron | 50.0% | |
| TTTGGCGACTTTCGTGACCA+CGG | - | chr4.1:28406330-28406349 | MS.gene003399:intron | 50.0% | |
| ! | TTGTTGGTTGCCTTGGGGTA+TGG | - | chr4.1:28408049-28408068 | MS.gene003399:intron | 50.0% |
| !! | TGGCAAGAGCTTTAGAGCAC+AGG | + | chr4.1:28407707-28407726 | None:intergenic | 50.0% |
| ACAACAGCACGGAGTAAGGC+AGG | + | chr4.1:28408224-28408243 | None:intergenic | 55.0% | |
| AGCAAGGCTAACACGGCACA+TGG | + | chr4.1:28407207-28407226 | None:intergenic | 55.0% | |
| CGGCCATAAACCATACCCCA+AGG | + | chr4.1:28408062-28408081 | None:intergenic | 55.0% | |
| CTTGTTCTACGCCTTCCCTC+TGG | - | chr4.1:28408285-28408304 | MS.gene003399:CDS | 55.0% | |
| GACTTTCGTGACCACGGTGT+GGG | - | chr4.1:28406336-28406355 | MS.gene003399:intron | 55.0% | |
| GAGAACAAGAGCGGCCATAC+CGG | + | chr4.1:28405660-28405679 | None:intergenic | 55.0% | |
| GATCCACGCCATCTCCACAT+GGG | - | chr4.1:28405589-28405608 | MS.gene003399:CDS | 55.0% | |
| GCGACAACCACCAAAGGTCA+AGG | - | chr4.1:28405616-28405635 | MS.gene003399:intron | 55.0% | |
| GCTGAAGCTGTTCACTCGCT+TGG | - | chr4.1:28405722-28405741 | MS.gene003399:intron | 55.0% | |
| GGCGAGTTACATGGAGGAGA+AGG | - | chr4.1:28406387-28406406 | MS.gene003399:CDS | 55.0% | |
| GTTCTGCATGACCCGCAGTT+GGG | + | chr4.1:28407313-28407332 | None:intergenic | 55.0% | |
| TGTTCTGCATGACCCGCAGT+TGG | + | chr4.1:28407314-28407333 | None:intergenic | 55.0% | |
| TTCTGCATGACCCGCAGTTG+GGG | + | chr4.1:28407312-28407331 | None:intergenic | 55.0% | |
| ! | GCTTTTCTCGCCGTCGTTTC+CGG | - | chr4.1:28405638-28405657 | MS.gene003399:intron | 55.0% |
| ACGCCATCTCCACATGGGTC+AGG | - | chr4.1:28405594-28405613 | MS.gene003399:CDS | 60.0% | |
| AGCGGCCATACCGGAAACGA+CGG | + | chr4.1:28405651-28405670 | None:intergenic | 60.0% | |
| CGACTTTCGTGACCACGGTG+TGG | - | chr4.1:28406335-28406354 | MS.gene003399:intron | 60.0% | |
| CGATCCACGCCATCTCCACA+TGG | - | chr4.1:28405588-28405607 | MS.gene003399:CDS | 60.0% | |
| GCGGGTCATGCAGAACACCA+AGG | - | chr4.1:28407317-28407336 | MS.gene003399:intron | 60.0% | |
| GGTCAGGCGACAACCACCAA+AGG | - | chr4.1:28405610-28405629 | MS.gene003399:intron | 60.0% | |
| TCGCCTGACCCATGTGGAGA+TGG | + | chr4.1:28405600-28405619 | None:intergenic | 60.0% | |
| TCTCGCCGTCGTTTCCGGTA+TGG | - | chr4.1:28405643-28405662 | MS.gene003399:intron | 60.0% | |
| TGACCCATGTGGAGATGGCG+TGG | + | chr4.1:28405595-28405614 | None:intergenic | 60.0% | |
| TGGTTGTCGCCTGACCCATG+TGG | + | chr4.1:28405606-28405625 | None:intergenic | 60.0% | |
| ! | TCTACGCCTTCCCTCTGGAG+TGG | - | chr4.1:28408290-28408309 | MS.gene003399:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 28405569 | 28408317 | 28405569 | ID=MS.gene003399 |
| chr4.1 | mRNA | 28405569 | 28408317 | 28405569 | ID=MS.gene003399.t1;Parent=MS.gene003399 |
| chr4.1 | exon | 28408095 | 28408317 | 28408095 | ID=MS.gene003399.t1.exon1;Parent=MS.gene003399.t1 |
| chr4.1 | CDS | 28408095 | 28408317 | 28408095 | ID=cds.MS.gene003399.t1;Parent=MS.gene003399.t1 |
| chr4.1 | exon | 28407454 | 28407653 | 28407454 | ID=MS.gene003399.t1.exon2;Parent=MS.gene003399.t1 |
| chr4.1 | CDS | 28407454 | 28407653 | 28407454 | ID=cds.MS.gene003399.t1;Parent=MS.gene003399.t1 |
| chr4.1 | exon | 28406548 | 28406688 | 28406548 | ID=MS.gene003399.t1.exon3;Parent=MS.gene003399.t1 |
| chr4.1 | CDS | 28406548 | 28406688 | 28406548 | ID=cds.MS.gene003399.t1;Parent=MS.gene003399.t1 |
| chr4.1 | exon | 28406370 | 28406450 | 28406370 | ID=MS.gene003399.t1.exon4;Parent=MS.gene003399.t1 |
| chr4.1 | CDS | 28406370 | 28406450 | 28406370 | ID=cds.MS.gene003399.t1;Parent=MS.gene003399.t1 |
| chr4.1 | exon | 28405734 | 28405858 | 28405734 | ID=MS.gene003399.t1.exon5;Parent=MS.gene003399.t1 |
| chr4.1 | CDS | 28405734 | 28405858 | 28405734 | ID=cds.MS.gene003399.t1;Parent=MS.gene003399.t1 |
| chr4.1 | exon | 28405569 | 28405617 | 28405569 | ID=MS.gene003399.t1.exon6;Parent=MS.gene003399.t1 |
| chr4.1 | CDS | 28405569 | 28405617 | 28405569 | ID=cds.MS.gene003399.t1;Parent=MS.gene003399.t1 |
| Gene Sequence |
| Protein sequence |
