Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28949.t1 | XP_013456565.1 | 100 | 272 | 0 | 0 | 1 | 272 | 1 | 272 | 2.60E-148 | 534.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28949.t1 | Q09473 | 33.2 | 226 | 132 | 5 | 47 | 268 | 2 | 212 | 2.5e-27 | 124.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28949.t1 | I3SDS4 | 100.0 | 272 | 0 | 0 | 1 | 272 | 1 | 272 | 1.9e-148 | 534.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003399 | MS.gene28949 | PPI |
| MS.gene052281 | MS.gene28949 | PPI |
| MS.gene023608 | MS.gene28949 | PPI |
| MS.gene28949 | MS.gene53264 | PPI |
| MS.gene28949 | MS.gene53261 | PPI |
| MS.gene27841 | MS.gene28949 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28949.t1 | MTR_4g075550 | 100.000 | 272 | 0 | 0 | 1 | 272 | 1 | 272 | 0.0 | 555 |
| MS.gene28949.t1 | MTR_3g113920 | 83.088 | 272 | 46 | 0 | 1 | 272 | 1 | 272 | 1.49e-172 | 477 |
| MS.gene28949.t1 | MTR_8g012595 | 49.077 | 271 | 135 | 3 | 1 | 268 | 1 | 271 | 1.35e-84 | 254 |
| MS.gene28949.t1 | MTR_8g012605 | 50.206 | 243 | 119 | 2 | 1 | 241 | 1 | 243 | 2.88e-83 | 251 |
| MS.gene28949.t1 | MTR_8g012615 | 52.821 | 195 | 91 | 1 | 75 | 268 | 9 | 203 | 3.37e-71 | 218 |
| MS.gene28949.t1 | MTR_8g012600 | 41.007 | 139 | 82 | 0 | 4 | 142 | 5 | 143 | 2.30e-31 | 118 |
| MS.gene28949.t1 | MTR_7g056337 | 34.061 | 229 | 130 | 8 | 47 | 269 | 2 | 215 | 5.47e-26 | 102 |
| MS.gene28949.t1 | MTR_8g087430 | 35.965 | 228 | 127 | 9 | 47 | 269 | 2 | 215 | 1.85e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28949.t1 | AT2G21190 | 89.552 | 268 | 28 | 0 | 5 | 272 | 2 | 269 | 0.0 | 498 |
| MS.gene28949.t1 | AT4G38790 | 88.806 | 268 | 30 | 0 | 5 | 272 | 6 | 273 | 7.85e-179 | 493 |
| MS.gene28949.t1 | AT1G75760 | 85.662 | 272 | 39 | 0 | 1 | 272 | 1 | 272 | 7.41e-176 | 486 |
| MS.gene28949.t1 | AT1G19970 | 80.147 | 272 | 54 | 0 | 1 | 272 | 1 | 272 | 2.27e-169 | 469 |
| MS.gene28949.t1 | AT1G75760 | 85.547 | 256 | 37 | 0 | 1 | 256 | 1 | 256 | 6.51e-165 | 457 |
| MS.gene28949.t1 | AT1G75760 | 85.185 | 216 | 32 | 0 | 1 | 216 | 1 | 216 | 5.56e-137 | 385 |
| MS.gene28949.t1 | AT1G19970 | 75.983 | 229 | 51 | 1 | 1 | 229 | 1 | 225 | 5.22e-132 | 373 |
| MS.gene28949.t1 | AT3G25160 | 61.194 | 268 | 103 | 1 | 2 | 268 | 4 | 271 | 2.00e-121 | 348 |
| MS.gene28949.t1 | AT3G25040 | 34.934 | 229 | 128 | 9 | 47 | 269 | 2 | 215 | 2.61e-29 | 110 |
| MS.gene28949.t1 | AT1G29330 | 35.371 | 229 | 127 | 10 | 47 | 269 | 2 | 215 | 3.25e-28 | 107 |
| MS.gene28949.t1 | AT1G29330 | 35.172 | 145 | 81 | 5 | 125 | 269 | 22 | 153 | 8.89e-18 | 78.6 |
Find 68 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCTTGGGGTATGGTTTA+TGG | 0.157797 | 4.4:-34659558 | MS.gene28949:CDS |
| CTGTGCTCATTGGGTTCTTC+AGG | 0.282833 | 4.4:-34660120 | MS.gene28949:intron |
| CTGGGCATTCTGTGTATATC+TGG | 0.298963 | 4.4:-34660346 | MS.gene28949:CDS |
| CATTCACACCATACTTGATT+TGG | 0.303886 | 4.4:-34661314 | MS.gene28949:CDS |
| AAAATATAGCTGTCAATTCC+TGG | 0.317259 | 4.4:+34661377 | None:intergenic |
| TGGACATTTGTTAGTTGCCT+TGG | 0.322932 | 4.4:-34659572 | MS.gene28949:CDS |
| GGACATTTGTTAGTTGCCTT+GGG | 0.343389 | 4.4:-34659571 | MS.gene28949:CDS |
| GATTCTTAAGCTGTGCTCAT+TGG | 0.373170 | 4.4:-34660130 | MS.gene28949:CDS |
| TTGTTAGTTGCCTTGGGGTA+TGG | 0.386334 | 4.4:-34659565 | MS.gene28949:CDS |
| ATTCTTAAGCTGTGCTCATT+GGG | 0.386910 | 4.4:-34660129 | MS.gene28949:CDS |
| GCGAGAAAAGCCTTGACCTT+TGG | 0.406284 | 4.4:+34661998 | None:intergenic |
| CTTCTCATCATATATTGAAC+AGG | 0.417454 | 4.4:-34660374 | MS.gene28949:CDS |
| GCTGAAGCTGTTCACTCGCT+TGG | 0.434191 | 4.4:-34661902 | MS.gene28949:CDS |
| GAAAGTGGCCAAATCAAGTA+TGG | 0.438431 | 4.4:+34661306 | None:intergenic |
| CTTGTTCTACGCCTTCCCTC+TGG | 0.447485 | 4.4:-34659327 | MS.gene28949:CDS |
| AATATATGATGAGAAGTTGA+TGG | 0.451706 | 4.4:+34660381 | None:intergenic |
| CGTGATCATGAACGATAAAT+CGG | 0.455398 | 4.4:+34661942 | None:intergenic |
| CACTTTCGTGACTACGGTGT+GGG | 0.455634 | 4.4:-34661290 | MS.gene28949:CDS |
| AGAAAAGCCTTGACCTTTGG+TGG | 0.458499 | 4.4:+34662001 | None:intergenic |
| GCGTGGATCGATGTTCTTTG+AGG | 0.459043 | 4.4:+34662049 | None:intergenic |
| TCTCGCCGTCGTTTCCGGTA+TGG | 0.465041 | 4.4:-34661981 | MS.gene28949:CDS |
| ACGCCATCTCCACATGGGTC+AGG | 0.477787 | 4.4:-34662030 | MS.gene28949:CDS |
| AATCTGCTAAGATGAATGTC+TGG | 0.487923 | 4.4:+34659506 | None:intergenic |
| TGTTCTGCATGACCCGCAGT+TGG | 0.489763 | 4.4:+34660304 | None:intergenic |
| GTTCTGCATGACCCGCAGTT+GGG | 0.500169 | 4.4:+34660305 | None:intergenic |
| GAGAACAAGAGCGGCCATAC+CGG | 0.503947 | 4.4:+34661967 | None:intergenic |
| ATGAAGGAGAAGACTTGTGC+TGG | 0.507531 | 4.4:-34661854 | MS.gene28949:intron |
| TAAATTGAAGGCGAGTTACA+TGG | 0.511519 | 4.4:-34661248 | MS.gene28949:CDS |
| TCGCCTGACCCATGTGGAGA+TGG | 0.520457 | 4.4:+34662027 | None:intergenic |
| GTATGGTTTATGGCCGTCGA+TGG | 0.522435 | 4.4:-34659548 | MS.gene28949:CDS |
| TCTGTTACTATTATGTCAAG+AGG | 0.527285 | 4.4:-34659483 | MS.gene28949:intron |
| TTTGGCCACTTTCGTGACTA+CGG | 0.527892 | 4.4:-34661296 | MS.gene28949:CDS |
| AAATATAGCTGTCAATTCCT+GGG | 0.533077 | 4.4:+34661378 | None:intergenic |
| CGATCCACGCCATCTCCACA+TGG | 0.539860 | 4.4:-34662036 | MS.gene28949:CDS |
| GGCGAGTTACATGGAGGAGA+AGG | 0.550641 | 4.4:-34661239 | MS.gene28949:CDS |
| AATACGTAATGAGCAGTGAA+TGG | 0.555239 | 4.4:+34660170 | None:intergenic |
| TTCAGTTCTACCCCAACTGC+GGG | 0.557419 | 4.4:-34660316 | MS.gene28949:CDS |
| CCACTTTCGTGACTACGGTG+TGG | 0.559378 | 4.4:-34661291 | MS.gene28949:CDS |
| TTCTGCATGACCCGCAGTTG+GGG | 0.562015 | 4.4:+34660306 | None:intergenic |
| AGGATTATCACTCAAATCCC+AGG | 0.579664 | 4.4:-34661395 | MS.gene28949:CDS |
| CCACACCGTAGTCACGAAAG+TGG | 0.585022 | 4.4:+34661291 | None:intergenic |
| AGCAAGGCTAACACGGCACA+TGG | 0.585861 | 4.4:+34660411 | None:intergenic |
| GACATTTGTTAGTTGCCTTG+GGG | 0.592311 | 4.4:-34659570 | MS.gene28949:CDS |
| AGCGGCCATACCGGAAACGA+CGG | 0.593225 | 4.4:+34661976 | None:intergenic |
| TTTCAGTTCTACCCCAACTG+CGG | 0.594339 | 4.4:-34660317 | MS.gene28949:CDS |
| ATGAATGAGCAAGGCTAACA+CGG | 0.596304 | 4.4:+34660404 | None:intergenic |
| TCTTATCTATAAACTCATGA+AGG | 0.599329 | 4.4:-34661870 | MS.gene28949:CDS |
| TGCAATCACACCACTCCAGA+GGG | 0.600263 | 4.4:+34659312 | None:intergenic |
| GGCAACTAACAAATGTCCAC+GGG | 0.610059 | 4.4:+34659576 | None:intergenic |
| TGACCCATGTGGAGATGGCG+TGG | 0.610245 | 4.4:+34662032 | None:intergenic |
| GCTCATTACGTATTTGCACT+CGG | 0.615273 | 4.4:-34660161 | MS.gene28949:CDS |
| TAACTTTGCAATATACTATG+TGG | 0.617993 | 4.4:-34661215 | MS.gene28949:intron |
| AGGCAACTAACAAATGTCCA+CGG | 0.618161 | 4.4:+34659575 | None:intergenic |
| GCGACAACCACCAAAGGTCA+AGG | 0.619702 | 4.4:-34662008 | MS.gene28949:CDS |
| CACCAGGTGTTAGATACCCG+TGG | 0.624596 | 4.4:-34659592 | MS.gene28949:intron |
| TCTACGCCTTCCCTCTGGAG+TGG | 0.628133 | 4.4:-34659322 | MS.gene28949:CDS |
| GGTCAGGCGACAACCACCAA+AGG | 0.628509 | 4.4:-34662014 | MS.gene28949:CDS |
| ATCACACCACTCCAGAGGGA+AGG | 0.629698 | 4.4:+34659316 | None:intergenic |
| AGTTGATGGATGAATGAGCA+AGG | 0.649423 | 4.4:+34660395 | None:intergenic |
| CTGCAATCACACCACTCCAG+AGG | 0.651756 | 4.4:+34659311 | None:intergenic |
| CGGCCATAAACCATACCCCA+AGG | 0.668614 | 4.4:+34659555 | None:intergenic |
| GATCCACGCCATCTCCACAT+GGG | 0.685742 | 4.4:-34662035 | MS.gene28949:CDS |
| GATCATGAACGATAAATCGG+AGG | 0.692285 | 4.4:+34661945 | None:intergenic |
| TCTGAGATAAGAACCATCGA+CGG | 0.702119 | 4.4:+34659535 | None:intergenic |
| AAATCGGAGGAGAACAAGAG+CGG | 0.713382 | 4.4:+34661958 | None:intergenic |
| ATTGAAGGCGAGTTACATGG+AGG | 0.718937 | 4.4:-34661245 | MS.gene28949:CDS |
| TGGTTGTCGCCTGACCCATG+TGG | 0.729979 | 4.4:+34662021 | None:intergenic |
| GCGGGTCATGCAGAACACCA+AGG | 0.742034 | 4.4:-34660298 | MS.gene28949:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGAATTGATTTTTTTT+TGG | - | chr4.4:34659572-34659591 | MS.gene28949:CDS | 10.0% |
| !!! | AAAAGAATTGATTTTTTTTT+GGG | - | chr4.4:34659573-34659592 | MS.gene28949:CDS | 10.0% |
| !! | AATAATATGATTATGAAATC+TGG | - | chr4.4:34660492-34660511 | MS.gene28949:intron | 15.0% |
| !! | TAAATAAATATACAAAAGCA+CGG | + | chr4.4:34662002-34662021 | None:intergenic | 15.0% |
| !! | TGATTGATAAAACATAAAAA+GGG | + | chr4.4:34659665-34659684 | None:intergenic | 15.0% |
| !! | TTGATTGATAAAACATAAAA+AGG | + | chr4.4:34659666-34659685 | None:intergenic | 15.0% |
| !!! | ATATATTCTTCTTTTGAAAA+TGG | - | chr4.4:34660926-34660945 | MS.gene28949:intron | 15.0% |
| !!! | ATGAAAAAGATCAATTTTTT+GGG | - | chr4.4:34659751-34659770 | MS.gene28949:intron | 15.0% |
| !! | AAAAAACATAAGACATTACA+TGG | - | chr4.4:34659725-34659744 | MS.gene28949:intron | 20.0% |
| !! | AAAAACATAAGACATTACAT+GGG | - | chr4.4:34659726-34659745 | MS.gene28949:intron | 20.0% |
| !! | ATTAGTTATAAATTTGCAAC+TGG | + | chr4.4:34661321-34661340 | None:intergenic | 20.0% |
| !! | GATTGATAAAACATAAAAAG+GGG | + | chr4.4:34659664-34659683 | None:intergenic | 20.0% |
| !!! | ATTGCCTTATTCATATTTTT+GGG | - | chr4.4:34660218-34660237 | MS.gene28949:intron | 20.0% |
| !!! | CATGAAAAAGATCAATTTTT+TGG | - | chr4.4:34659750-34659769 | MS.gene28949:intron | 20.0% |
| !!! | CATTTTTTCTTACTCTTTTA+TGG | - | chr4.4:34660253-34660272 | MS.gene28949:intron | 20.0% |
| !!! | TCTTTTTTTGTAAAATCGAA+GGG | + | chr4.4:34659559-34659578 | None:intergenic | 20.0% |
| !!! | TTATTTAATTGCAGTGTTTT+CGG | - | chr4.4:34662015-34662034 | MS.gene28949:CDS | 20.0% |
| !!! | TTCTTTTTTTGTAAAATCGA+AGG | + | chr4.4:34659560-34659579 | None:intergenic | 20.0% |
| !!! | TTGAATCTTTTTGTTTTCTT+GGG | - | chr4.4:34659609-34659628 | MS.gene28949:intron | 20.0% |
| !!! | TTTGAATCTTTTTGTTTTCT+TGG | - | chr4.4:34659608-34659627 | MS.gene28949:intron | 20.0% |
| ! | AAGAAAAAATGTATCACCAT+TGG | + | chr4.4:34660244-34660263 | None:intergenic | 25.0% |
| ! | AATATATGATGAGAAGTTGA+TGG | + | chr4.4:34660994-34661013 | None:intergenic | 25.0% |
| ! | AATCATATTATTCATGCAGA+AGG | + | chr4.4:34660484-34660503 | None:intergenic | 25.0% |
| ! | ACAAAATGAAACAATTCAGA+AGG | + | chr4.4:34661165-34661184 | None:intergenic | 25.0% |
| ! | ACATCATATATATAGTCATC+TGG | - | chr4.4:34661659-34661678 | MS.gene28949:intron | 25.0% |
| ! | AGAATATATCAAGCTGATAA+TGG | + | chr4.4:34660915-34660934 | None:intergenic | 25.0% |
| ! | ATTGCACTTAAAAACTTACA+TGG | - | chr4.4:34659809-34659828 | MS.gene28949:intron | 25.0% |
| ! | ATTGTTATGAATGATGTAAC+AGG | - | chr4.4:34659957-34659976 | MS.gene28949:intron | 25.0% |
| ! | CATCATATATATAGTCATCT+GGG | - | chr4.4:34661660-34661679 | MS.gene28949:intron | 25.0% |
| ! | GATGCAATCATATTTGAATA+AGG | - | chr4.4:34660759-34660778 | MS.gene28949:intron | 25.0% |
| ! | GGAGTTAAAAATTTATACCT+TGG | + | chr4.4:34661094-34661113 | None:intergenic | 25.0% |
| ! | TAAATTATTCTTCTTCCTGA+AGG | - | chr4.4:34660839-34660858 | MS.gene28949:intron | 25.0% |
| ! | TAACTTTGCAATATACTATG+TGG | - | chr4.4:34660157-34660176 | MS.gene28949:CDS | 25.0% |
| ! | TATTCAAATATGATTGCATC+AGG | + | chr4.4:34660759-34660778 | None:intergenic | 25.0% |
| ! | TCTTATCTATAAACTCATGA+AGG | - | chr4.4:34659502-34659521 | MS.gene28949:CDS | 25.0% |
| ! | TTGCACTTAAAAACTTACAT+GGG | - | chr4.4:34659810-34659829 | MS.gene28949:intron | 25.0% |
| !! | AAGGCAATGCTTTTAAATTT+AGG | + | chr4.4:34660206-34660225 | None:intergenic | 25.0% |
| !! | AGAAAAAGTATGTTAGTAGA+AGG | + | chr4.4:34661758-34661777 | None:intergenic | 25.0% |
| !! | AGTCTTTCTTTCATTTTCAA+TGG | - | chr4.4:34661405-34661424 | MS.gene28949:intron | 25.0% |
| !! | ATATATTGAACAGGATTTTC+TGG | - | chr4.4:34661007-34661026 | MS.gene28949:intron | 25.0% |
| !! | TATATTGAACAGGATTTTCT+GGG | - | chr4.4:34661008-34661027 | MS.gene28949:intron | 25.0% |
| !!! | AGGTATAAATTTTTAACTCC+AGG | - | chr4.4:34661094-34661113 | MS.gene28949:intron | 25.0% |
| !!! | CATGATTCGTTTTAAATTGA+AGG | - | chr4.4:34660112-34660131 | MS.gene28949:intron | 25.0% |
| !!! | CATTGCCTTATTCATATTTT+TGG | - | chr4.4:34660217-34660236 | MS.gene28949:intron | 25.0% |
| !!! | CTTTTTTTGTAAAATCGAAG+GGG | + | chr4.4:34659558-34659577 | None:intergenic | 25.0% |
| !!! | TTGATTTTGTGACTTTTTTC+TGG | - | chr4.4:34660863-34660882 | MS.gene28949:intron | 25.0% |
| !!! | TTGGCTTAATGTGTTATTTT+TGG | - | chr4.4:34659874-34659893 | MS.gene28949:intron | 25.0% |
| !!! | TTTTTTTGTAAAATCGAAGG+GGG | + | chr4.4:34659557-34659576 | None:intergenic | 25.0% |
| AAAATATAGCTGTCAATTCC+TGG | + | chr4.4:34659998-34660017 | None:intergenic | 30.0% | |
| AAATATAGCTGTCAATTCCT+GGG | + | chr4.4:34659997-34660016 | None:intergenic | 30.0% | |
| AATTAGGAGATTACAGATTC+GGG | + | chr4.4:34661583-34661602 | None:intergenic | 30.0% | |
| ATACTATTCATTATTCACCC+AGG | + | chr4.4:34660531-34660550 | None:intergenic | 30.0% | |
| ATGTCCATCATCTAATGTAT+GGG | - | chr4.4:34661121-34661140 | MS.gene28949:intron | 30.0% | |
| CAATTAGGAGATTACAGATT+CGG | + | chr4.4:34661584-34661603 | None:intergenic | 30.0% | |
| CTTCTCATCATATATTGAAC+AGG | - | chr4.4:34660998-34661017 | MS.gene28949:intron | 30.0% | |
| TAACAAGCTATCATGCAAAA+TGG | - | chr4.4:34660563-34660582 | MS.gene28949:intron | 30.0% | |
| TAAGTGCAATGCAATCTAAA+GGG | + | chr4.4:34659799-34659818 | None:intergenic | 30.0% | |
| TATCTTTCACATTACAGACA+AGG | + | chr4.4:34661548-34661567 | None:intergenic | 30.0% | |
| TATGTCCATCATCTAATGTA+TGG | - | chr4.4:34661120-34661139 | MS.gene28949:intron | 30.0% | |
| TCTGTTACTATTATGTCAAG+AGG | - | chr4.4:34661889-34661908 | MS.gene28949:CDS | 30.0% | |
| TGTTACAATGTTTGTGTGTT+CGG | - | chr4.4:34661622-34661641 | MS.gene28949:intron | 30.0% | |
| TTAAGTGCAATGCAATCTAA+AGG | + | chr4.4:34659800-34659819 | None:intergenic | 30.0% | |
| TTATTACTAACCTGTAACGT+TGG | - | chr4.4:34660591-34660610 | MS.gene28949:intron | 30.0% | |
| TTATTCATGCAGAAGGAAAT+TGG | + | chr4.4:34660477-34660496 | None:intergenic | 30.0% | |
| TTCTTGGGTCTTTGTTAATT+GGG | - | chr4.4:34659624-34659643 | MS.gene28949:intron | 30.0% | |
| TTGGCCCAAAAATATGAATA+AGG | + | chr4.4:34660225-34660244 | None:intergenic | 30.0% | |
| TTTCTTGGGTCTTTGTTAAT+TGG | - | chr4.4:34659623-34659642 | MS.gene28949:intron | 30.0% | |
| ! | TTTAGGATGAAACAGACAAT+TGG | + | chr4.4:34660189-34660208 | None:intergenic | 30.0% |
| !! | ATAGCTAAGCCATTTTGTAA+AGG | - | chr4.4:34661435-34661454 | MS.gene28949:intron | 30.0% |
| !! | ATATATCAAGCTGATAATGG+TGG | + | chr4.4:34660912-34660931 | None:intergenic | 30.0% |
| !! | ATTTGATTTGTGTTTGTGGT+TGG | - | chr4.4:34659855-34659874 | MS.gene28949:intron | 30.0% |
| !! | GCTAATTTGATTTGTGTTTG+TGG | - | chr4.4:34659851-34659870 | MS.gene28949:intron | 30.0% |
| !!! | CAGCTATATTTTTAGCTGTT+AGG | - | chr4.4:34660006-34660025 | MS.gene28949:intron | 30.0% |
| !!! | TATTCATATTTTTGGGCCAA+TGG | - | chr4.4:34660225-34660244 | MS.gene28949:intron | 30.0% |
| !!! | TGATTGCATCAGGTTTTATT+TGG | + | chr4.4:34660749-34660768 | None:intergenic | 30.0% |
| AAAAGAAGAGGGGGTTTAAA+AGG | + | chr4.4:34660789-34660808 | None:intergenic | 35.0% | |
| AATACGTAATGAGCAGTGAA+TGG | + | chr4.4:34661205-34661224 | None:intergenic | 35.0% | |
| AATCTGCTAAGATGAATGTC+TGG | + | chr4.4:34661869-34661888 | None:intergenic | 35.0% | |
| AGATCCCATACATTAGATGA+TGG | + | chr4.4:34661128-34661147 | None:intergenic | 35.0% | |
| AGTACAGGACTAAAAGAAGA+GGG | + | chr4.4:34660800-34660819 | None:intergenic | 35.0% | |
| ATATGCCTGCATACTAGATT+AGG | - | chr4.4:34660648-34660667 | MS.gene28949:intron | 35.0% | |
| ATATTCCACTCCTTGATCAA+CGG | + | chr4.4:34661364-34661383 | None:intergenic | 35.0% | |
| ATTCTTAAGCTGTGCTCATT+GGG | - | chr4.4:34661243-34661262 | MS.gene28949:CDS | 35.0% | |
| CACACAAACATTGTAACAGA+TGG | + | chr4.4:34661620-34661639 | None:intergenic | 35.0% | |
| CATAGGTTGCCTTTACAAAA+TGG | + | chr4.4:34661447-34661466 | None:intergenic | 35.0% | |
| CATTCACACCATACTTGATT+TGG | - | chr4.4:34660058-34660077 | MS.gene28949:intron | 35.0% | |
| CGTGATCATGAACGATAAAT+CGG | + | chr4.4:34659433-34659452 | None:intergenic | 35.0% | |
| CTTAAAAACTTACATGGGTC+AGG | - | chr4.4:34659815-34659834 | MS.gene28949:intron | 35.0% | |
| CTTAAGTCACTATCAGCAAA+AGG | + | chr4.4:34661961-34661980 | None:intergenic | 35.0% | |
| GTAGTCTACTATAGACAAGA+CGG | - | chr4.4:34661517-34661536 | MS.gene28949:intron | 35.0% | |
| TAAATTGAAGGCGAGTTACA+TGG | - | chr4.4:34660124-34660143 | MS.gene28949:CDS | 35.0% | |
| TAAATTTGCAACTGGATCAG+AGG | + | chr4.4:34661313-34661332 | None:intergenic | 35.0% | |
| TATGCCTGCATACTAGATTA+GGG | - | chr4.4:34660649-34660668 | MS.gene28949:intron | 35.0% | |
| TATTCACCCAGGTTATTCTA+TGG | + | chr4.4:34660520-34660539 | None:intergenic | 35.0% | |
| TCTGTAATCTCCTAATTGCA+TGG | - | chr4.4:34661586-34661605 | MS.gene28949:intron | 35.0% | |
| ! | TTTAATTGCAGTGTTTTCGG+AGG | - | chr4.4:34662018-34662037 | MS.gene28949:CDS | 35.0% |
| !! | CTTCTTTTGAAAATGGTTGC+AGG | - | chr4.4:34660933-34660952 | MS.gene28949:intron | 35.0% |
| !!! | AACATACTTTTTCTTGCACC+AGG | - | chr4.4:34661764-34661783 | MS.gene28949:intron | 35.0% |
| !!! | GCTGTATTGTAGTTTTGTCA+TGG | - | chr4.4:34660028-34660047 | MS.gene28949:intron | 35.0% |
| AGGATTATCACTCAAATCCC+AGG | - | chr4.4:34659977-34659996 | MS.gene28949:intron | 40.0% | |
| AGGCAACTAACAAATGTCCA+CGG | + | chr4.4:34661800-34661819 | None:intergenic | 40.0% | |
| AGTCACAAAATCAAGCCTTC+AGG | + | chr4.4:34660857-34660876 | None:intergenic | 40.0% | |
| ATGAATGAGCAAGGCTAACA+CGG | + | chr4.4:34660971-34660990 | None:intergenic | 40.0% | |
| ATGCAGAAGGAAATTGGCAT+CGG | + | chr4.4:34660471-34660490 | None:intergenic | 40.0% | |
| CAGCATGCACATGATTTACT+AGG | - | chr4.4:34660688-34660707 | MS.gene28949:intron | 40.0% | |
| CTGGATCCATAGAATAACCT+GGG | - | chr4.4:34660511-34660530 | MS.gene28949:intron | 40.0% | |
| CTTCTTGCAATAGAACCAAG+TGG | - | chr4.4:34660716-34660735 | MS.gene28949:intron | 40.0% | |
| GAAAGTGGCCAAATCAAGTA+TGG | + | chr4.4:34660069-34660088 | None:intergenic | 40.0% | |
| GAGTACAGGACTAAAAGAAG+AGG | + | chr4.4:34660801-34660820 | None:intergenic | 40.0% | |
| GATCATGAACGATAAATCGG+AGG | + | chr4.4:34659430-34659449 | None:intergenic | 40.0% | |
| GATTCTTAAGCTGTGCTCAT+TGG | - | chr4.4:34661242-34661261 | MS.gene28949:CDS | 40.0% | |
| GCTCATTACGTATTTGCACT+CGG | - | chr4.4:34661211-34661230 | MS.gene28949:intron | 40.0% | |
| GTACAGGACTAAAAGAAGAG+GGG | + | chr4.4:34660799-34660818 | None:intergenic | 40.0% | |
| TACAGGACTAAAAGAAGAGG+GGG | + | chr4.4:34660798-34660817 | None:intergenic | 40.0% | |
| TATTCCACTCCTTGATCAAC+GGG | + | chr4.4:34661363-34661382 | None:intergenic | 40.0% | |
| TCTGGATCCATAGAATAACC+TGG | - | chr4.4:34660510-34660529 | MS.gene28949:intron | 40.0% | |
| TGCATACTAGATTAGGGTCT+GGG | - | chr4.4:34660655-34660674 | MS.gene28949:intron | 40.0% | |
| TGGGTCTTTGTTAATTGGGT+AGG | - | chr4.4:34659628-34659647 | MS.gene28949:intron | 40.0% | |
| TGTATACTACCATTGCACAC+AGG | + | chr4.4:34660366-34660385 | None:intergenic | 40.0% | |
| ! | CTTGAATATGCAGAGAGTAC+AGG | + | chr4.4:34660815-34660834 | None:intergenic | 40.0% |
| ! | GACATTTGTTAGTTGCCTTG+GGG | - | chr4.4:34661802-34661821 | MS.gene28949:intron | 40.0% |
| ! | GGACATTTGTTAGTTGCCTT+GGG | - | chr4.4:34661801-34661820 | MS.gene28949:intron | 40.0% |
| ! | TCTGAGATAAGAACCATCGA+CGG | + | chr4.4:34661840-34661859 | None:intergenic | 40.0% |
| ! | TGGACATTTGTTAGTTGCCT+TGG | - | chr4.4:34661800-34661819 | MS.gene28949:intron | 40.0% |
| ! | TTATTTGGTCATGTGCCACT+TGG | + | chr4.4:34660734-34660753 | None:intergenic | 40.0% |
| !! | AGTTGATGGATGAATGAGCA+AGG | + | chr4.4:34660980-34660999 | None:intergenic | 40.0% |
| !! | ATCAAGCTGATAATGGTGGA+AGG | + | chr4.4:34660908-34660927 | None:intergenic | 40.0% |
| !! | CTTGGTTCTATTGCAAGAAG+AGG | + | chr4.4:34660716-34660735 | None:intergenic | 40.0% |
| !! | TAGATGATGGACATAGATCC+TGG | + | chr4.4:34661115-34661134 | None:intergenic | 40.0% |
| !!! | CTTTGGTTTTGTAGCTTGCT+TGG | - | chr4.4:34661713-34661732 | MS.gene28949:intron | 40.0% |
| AAATCGGAGGAGAACAAGAG+CGG | + | chr4.4:34659417-34659436 | None:intergenic | 45.0% | |
| AGAAAAGCCTTGACCTTTGG+TGG | + | chr4.4:34659374-34659393 | None:intergenic | 45.0% | |
| AGACTACAACGCATGCACAA+TGG | + | chr4.4:34661504-34661523 | None:intergenic | 45.0% | |
| ATAACCGCAACCAACGTTAC+AGG | + | chr4.4:34660604-34660623 | None:intergenic | 45.0% | |
| ATGAAGGAGAAGACTTGTGC+TGG | - | chr4.4:34659518-34659537 | MS.gene28949:CDS | 45.0% | |
| ATGGGTCAGGAGAAATCACA+TGG | - | chr4.4:34659828-34659847 | MS.gene28949:intron | 45.0% | |
| ATTGAAGGCGAGTTACATGG+AGG | - | chr4.4:34660127-34660146 | MS.gene28949:CDS | 45.0% | |
| CAGACCCTAATCTAGTATGC+AGG | + | chr4.4:34660656-34660675 | None:intergenic | 45.0% | |
| CTGCATACTAGATTAGGGTC+TGG | - | chr4.4:34660654-34660673 | MS.gene28949:intron | 45.0% | |
| CTGGGCATTCTGTGTATATC+TGG | - | chr4.4:34661026-34661045 | MS.gene28949:intron | 45.0% | |
| GACTACAACGCATGCACAAT+GGG | + | chr4.4:34661503-34661522 | None:intergenic | 45.0% | |
| GATATGTCACCTGTGTGCAA+TGG | - | chr4.4:34660354-34660373 | MS.gene28949:CDS | 45.0% | |
| GCATACTAGATTAGGGTCTG+GGG | - | chr4.4:34660656-34660675 | MS.gene28949:intron | 45.0% | |
| GGCAACTAACAAATGTCCAC+GGG | + | chr4.4:34661799-34661818 | None:intergenic | 45.0% | |
| TGGGTCAGGAGAAATCACAT+GGG | - | chr4.4:34659829-34659848 | MS.gene28949:intron | 45.0% | |
| TTGCCTTGGGGTATGGTTTA+TGG | - | chr4.4:34661814-34661833 | MS.gene28949:intron | 45.0% | |
| TTGTTAGTTGCCTTGGGGTA+TGG | - | chr4.4:34661807-34661826 | MS.gene28949:intron | 45.0% | |
| TTTCAGTTCTACCCCAACTG+CGG | - | chr4.4:34661055-34661074 | MS.gene28949:intron | 45.0% | |
| ! | AAAGCTCTTGCCTTTTGGTG+AGG | - | chr4.4:34661471-34661490 | MS.gene28949:intron | 45.0% |
| ! | AAGCTCTTGCCTTTTGGTGA+GGG | - | chr4.4:34661472-34661491 | MS.gene28949:intron | 45.0% |
| ! | CTAACCTGTAACGTTGGTTG+CGG | - | chr4.4:34660597-34660616 | MS.gene28949:intron | 45.0% |
| ! | TTTGGCCACTTTCGTGACTA+CGG | - | chr4.4:34660076-34660095 | MS.gene28949:intron | 45.0% |
| !! | AGCTGATAATGGTGGAAGGA+AGG | + | chr4.4:34660904-34660923 | None:intergenic | 45.0% |
| !! | AGGCAAGAGCTTTAGAGCAT+AGG | + | chr4.4:34661464-34661483 | None:intergenic | 45.0% |
| !!! | CTGTTTTCGCATCGACTCTT+TGG | - | chr4.4:34661696-34661715 | MS.gene28949:intron | 45.0% |
| !!! | GCTCTAAAGCTCTTGCCTTT+TGG | - | chr4.4:34661466-34661485 | MS.gene28949:intron | 45.0% |
| CACTTTCGTGACTACGGTGT+GGG | - | chr4.4:34660082-34660101 | MS.gene28949:intron | 50.0% | |
| CTGTGCTCATTGGGTTCTTC+AGG | - | chr4.4:34661252-34661271 | MS.gene28949:CDS | 50.0% | |
| GCGAGAAAAGCCTTGACCTT+TGG | + | chr4.4:34659377-34659396 | None:intergenic | 50.0% | |
| GCGTGGATCGATGTTCTTTG+AGG | + | chr4.4:34659326-34659345 | None:intergenic | 50.0% | |
| GGAGTTGCTGCCATGCAATT+AGG | + | chr4.4:34661599-34661618 | None:intergenic | 50.0% | |
| GTATGGTTTATGGCCGTCGA+TGG | - | chr4.4:34661824-34661843 | MS.gene28949:intron | 50.0% | |
| TCCTTGATCAACGGGAAGGA+CGG | + | chr4.4:34661355-34661374 | None:intergenic | 50.0% | |
| TTCAGTTCTACCCCAACTGC+GGG | - | chr4.4:34661056-34661075 | MS.gene28949:intron | 50.0% | |
| ! | ACAAAAGCACGGAGTCATGC+AGG | + | chr4.4:34661991-34662010 | None:intergenic | 50.0% |
| ! | CAACGCATGCACAATGGGTT+TGG | + | chr4.4:34661498-34661517 | None:intergenic | 50.0% |
| AGCAAGGCTAACACGGCACA+TGG | + | chr4.4:34660964-34660983 | None:intergenic | 55.0% | |
| CACCAGGTGTTAGATACCCG+TGG | - | chr4.4:34661780-34661799 | MS.gene28949:intron | 55.0% | |
| CCACACCGTAGTCACGAAAG+TGG | + | chr4.4:34660084-34660103 | None:intergenic | 55.0% | |
| CCACTCCTTGATCAACGGGA+AGG | + | chr4.4:34661359-34661378 | None:intergenic | 55.0% | |
| CCACTTTCGTGACTACGGTG+TGG | - | chr4.4:34660081-34660100 | MS.gene28949:intron | 55.0% | |
| CCTTCCCGTTGATCAAGGAG+TGG | - | chr4.4:34661356-34661375 | MS.gene28949:CDS | 55.0% | |
| CGGCCATAAACCATACCCCA+AGG | + | chr4.4:34661820-34661839 | None:intergenic | 55.0% | |
| CTTGTTCTACGCCTTCCCTC+TGG | - | chr4.4:34662045-34662064 | MS.gene28949:CDS | 55.0% | |
| GAGAACAAGAGCGGCCATAC+CGG | + | chr4.4:34659408-34659427 | None:intergenic | 55.0% | |
| GATCCACGCCATCTCCACAT+GGG | - | chr4.4:34659337-34659356 | MS.gene28949:CDS | 55.0% | |
| GCGACAACCACCAAAGGTCA+AGG | - | chr4.4:34659364-34659383 | MS.gene28949:intron | 55.0% | |
| GCTGAAGCTGTTCACTCGCT+TGG | - | chr4.4:34659470-34659489 | MS.gene28949:intron | 55.0% | |
| GGCGAGTTACATGGAGGAGA+AGG | - | chr4.4:34660133-34660152 | MS.gene28949:CDS | 55.0% | |
| GTCCACGGGTATCTAACACC+TGG | + | chr4.4:34661785-34661804 | None:intergenic | 55.0% | |
| GTTCTGCATGACCCGCAGTT+GGG | + | chr4.4:34661070-34661089 | None:intergenic | 55.0% | |
| TGGGTTTGGCCCTCACCAAA+AGG | + | chr4.4:34661484-34661503 | None:intergenic | 55.0% | |
| TGTTCTGCATGACCCGCAGT+TGG | + | chr4.4:34661071-34661090 | None:intergenic | 55.0% | |
| TTCTGCATGACCCGCAGTTG+GGG | + | chr4.4:34661069-34661088 | None:intergenic | 55.0% | |
| ! | GCTTTTCTCGCCGTCGTTTC+CGG | - | chr4.4:34659386-34659405 | MS.gene28949:intron | 55.0% |
| ACGCCATCTCCACATGGGTC+AGG | - | chr4.4:34659342-34659361 | MS.gene28949:CDS | 60.0% | |
| AGCGGCCATACCGGAAACGA+CGG | + | chr4.4:34659399-34659418 | None:intergenic | 60.0% | |
| CGATCCACGCCATCTCCACA+TGG | - | chr4.4:34659336-34659355 | MS.gene28949:CDS | 60.0% | |
| GCCGTCCTTCCCGTTGATCA+AGG | - | chr4.4:34661351-34661370 | MS.gene28949:CDS | 60.0% | |
| GCGGGTCATGCAGAACACCA+AGG | - | chr4.4:34661074-34661093 | MS.gene28949:intron | 60.0% | |
| GGTCAGGCGACAACCACCAA+AGG | - | chr4.4:34659358-34659377 | MS.gene28949:intron | 60.0% | |
| TCGCCTGACCCATGTGGAGA+TGG | + | chr4.4:34659348-34659367 | None:intergenic | 60.0% | |
| TCTCGCCGTCGTTTCCGGTA+TGG | - | chr4.4:34659391-34659410 | MS.gene28949:intron | 60.0% | |
| TGACCCATGTGGAGATGGCG+TGG | + | chr4.4:34659343-34659362 | None:intergenic | 60.0% | |
| TGGTTGTCGCCTGACCCATG+TGG | + | chr4.4:34659354-34659373 | None:intergenic | 60.0% | |
| ! | TCTACGCCTTCCCTCTGGAG+TGG | - | chr4.4:34662050-34662069 | MS.gene28949:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 34659317 | 34662077 | 34659317 | ID=MS.gene28949 |
| chr4.4 | mRNA | 34659317 | 34662077 | 34659317 | ID=MS.gene28949.t1;Parent=MS.gene28949 |
| chr4.4 | exon | 34661855 | 34662077 | 34661855 | ID=MS.gene28949.t1.exon1;Parent=MS.gene28949.t1 |
| chr4.4 | CDS | 34661855 | 34662077 | 34661855 | ID=cds.MS.gene28949.t1;Parent=MS.gene28949.t1 |
| chr4.4 | exon | 34661216 | 34661415 | 34661216 | ID=MS.gene28949.t1.exon2;Parent=MS.gene28949.t1 |
| chr4.4 | CDS | 34661216 | 34661415 | 34661216 | ID=cds.MS.gene28949.t1;Parent=MS.gene28949.t1 |
| chr4.4 | exon | 34660299 | 34660439 | 34660299 | ID=MS.gene28949.t1.exon3;Parent=MS.gene28949.t1 |
| chr4.4 | CDS | 34660299 | 34660439 | 34660299 | ID=cds.MS.gene28949.t1;Parent=MS.gene28949.t1 |
| chr4.4 | exon | 34660121 | 34660201 | 34660121 | ID=MS.gene28949.t1.exon4;Parent=MS.gene28949.t1 |
| chr4.4 | CDS | 34660121 | 34660201 | 34660121 | ID=cds.MS.gene28949.t1;Parent=MS.gene28949.t1 |
| chr4.4 | exon | 34659484 | 34659608 | 34659484 | ID=MS.gene28949.t1.exon5;Parent=MS.gene28949.t1 |
| chr4.4 | CDS | 34659484 | 34659608 | 34659484 | ID=cds.MS.gene28949.t1;Parent=MS.gene28949.t1 |
| chr4.4 | exon | 34659317 | 34659365 | 34659317 | ID=MS.gene28949.t1.exon6;Parent=MS.gene28949.t1 |
| chr4.4 | CDS | 34659317 | 34659365 | 34659317 | ID=cds.MS.gene28949.t1;Parent=MS.gene28949.t1 |
| Gene Sequence |
| Protein sequence |
