AlfalfaGEDB | MS.gene53287

M. sativa cultivar XinJiangDaYe / MS.gene53287

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53287.t1	XP_013468670.1	96.6	116	4	0	1	116	93	208	5.10E-53	216.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53287.t1	Q9FL41	38.8	121	66	1	4	116	97	217	6.6e-17	88.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53287.t1	A0A072VLI8	96.6	116	4	0	1	116	93	208	3.7e-53	216.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050584	MS.gene53287	0.826155	3.17E-54	-1.69E-46
MS.gene050585	MS.gene53287	0.823035	1.72E-53	-1.69E-46
MS.gene050587	MS.gene53287	0.824156	9.40E-54	-1.69E-46
MS.gene05143	MS.gene53287	0.821456	4.00E-53	-1.69E-46
MS.gene051789	MS.gene53287	0.800029	1.75E-48	-1.69E-46
MS.gene052142	MS.gene53287	0.808147	3.57E-50	-1.69E-46
MS.gene053074	MS.gene53287	0.84416	8.98E-59	-1.69E-46
MS.gene053383	MS.gene53287	0.816515	5.32E-52	-1.69E-46
MS.gene05456	MS.gene53287	0.842365	2.70E-58	-1.69E-46
MS.gene054596	MS.gene53287	0.819982	8.72E-53	-1.69E-46
MS.gene055359	MS.gene53287	0.84674	1.80E-59	-1.69E-46
MS.gene059006	MS.gene53287	0.833139	6.33E-56	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53287.t1	MTR_1g073990	96.552	116	4	0	1	116	93	208	1.93e-75	227
MS.gene53287.t1	MTR_1g074070	83.621	116	18	1	1	116	93	207	4.81e-65	201
MS.gene53287.t1	MTR_1g074020	77.586	116	25	1	1	116	90	204	2.74e-60	188
MS.gene53287.t1	MTR_1g074120	80.172	116	22	1	1	116	93	207	5.76e-60	187
MS.gene53287.t1	MTR_1g074160	76.724	116	26	1	1	116	90	204	2.73e-59	183
MS.gene53287.t1	MTR_1g074160	76.724	116	26	1	1	116	90	204	3.23e-58	183
MS.gene53287.t1	MTR_1g051120	66.667	117	38	1	1	116	93	209	2.58e-49	156
MS.gene53287.t1	MTR_1g051120	66.667	117	38	1	1	116	93	209	1.85e-48	155
MS.gene53287.t1	MTR_1g051120	66.667	117	38	1	1	116	93	209	2.15e-47	155
MS.gene53287.t1	MTR_1g070175	47.414	116	58	1	1	116	93	205	9.91e-32	114
MS.gene53287.t1	MTR_3g012420	39.130	115	68	1	4	116	97	211	2.51e-20	84.7
MS.gene53287.t1	MTR_7g100050	42.373	118	52	5	4	111	93	204	7.84e-20	83.2
MS.gene53287.t1	MTR_1g030580	36.885	122	60	2	4	116	96	209	3.49e-19	81.3
MS.gene53287.t1	MTR_8g041390	47.500	80	38	1	4	79	93	172	3.55e-19	81.3
MS.gene53287.t1	MTR_6g036450	40.000	120	62	4	4	116	95	211	8.50e-18	77.4
MS.gene53287.t1	MTR_3g072530	33.333	111	73	1	7	116	97	207	9.05e-18	77.0
MS.gene53287.t1	MTR_3g072530	33.333	111	73	1	7	116	97	207	1.56e-17	76.6
MS.gene53287.t1	MTR_1g068630	37.815	119	61	2	4	116	95	206	2.77e-17	75.9
MS.gene53287.t1	MTR_3g072500	32.500	120	70	2	4	116	100	215	7.09e-17	73.2
MS.gene53287.t1	MTR_1g014790	39.655	116	61	4	7	116	46	158	9.08e-17	72.8
MS.gene53287.t1	MTR_3g072500	32.500	120	70	2	4	116	100	215	1.72e-16	73.2
MS.gene53287.t1	MTR_1g014510	40.517	116	60	4	7	116	95	207	1.98e-16	73.9
MS.gene53287.t1	MTR_3g072500	32.500	120	70	2	4	116	100	215	2.93e-16	73.2
MS.gene53287.t1	MTR_6g007740	37.838	111	63	3	7	115	95	201	4.01e-16	73.2
MS.gene53287.t1	MTR_1g030600	35.965	114	68	3	7	116	101	213	4.17e-16	72.8
MS.gene53287.t1	MTR_4g094342	33.065	124	69	4	3	116	92	211	7.82e-16	71.2
MS.gene53287.t1	MTR_3g090550	39.394	99	60	0	7	105	88	186	8.45e-16	71.6
MS.gene53287.t1	MTR_4g094340	33.051	118	73	2	4	116	106	222	8.64e-16	70.5
MS.gene53287.t1	MTR_5g021160	36.667	120	71	2	1	116	1	119	9.86e-16	71.2
MS.gene53287.t1	MTR_4g094340	33.051	118	73	2	4	116	88	204	1.20e-15	70.9
MS.gene53287.t1	MTR_4g094340	33.051	118	73	2	4	116	22	138	1.25e-15	70.9
MS.gene53287.t1	MTR_4g094342	33.065	124	69	4	3	116	92	211	1.61e-15	71.2
MS.gene53287.t1	MTR_6g081840	33.600	125	64	4	4	116	90	207	1.62e-15	71.2
MS.gene53287.t1	MTR_4g094340	33.051	118	73	2	4	116	106	222	1.62e-15	70.5
MS.gene53287.t1	MTR_3g072560	32.727	110	73	1	7	116	101	209	1.65e-15	71.2
MS.gene53287.t1	MTR_5g021160	36.667	120	71	2	1	116	84	202	1.93e-15	70.1
MS.gene53287.t1	MTR_4g094340	33.051	118	73	2	4	116	88	204	2.18e-15	70.9
MS.gene53287.t1	MTR_5g021160	36.667	120	71	2	1	116	84	202	2.42e-15	70.5
MS.gene53287.t1	MTR_4g094340	33.051	118	73	2	4	116	106	222	2.49e-15	70.5
MS.gene53287.t1	MTR_4g094362	37.607	117	68	3	4	116	94	209	2.73e-15	70.5
MS.gene53287.t1	MTR_2g007960	34.426	122	71	3	4	116	92	213	8.34e-15	69.3
MS.gene53287.t1	MTR_3g072500	31.304	115	68	2	9	116	2	112	9.24e-15	68.6
MS.gene53287.t1	MTR_2g007990	33.607	122	73	2	1	116	92	211	1.63e-14	68.6
MS.gene53287.t1	MTR_1g038560	33.333	114	74	2	5	116	82	195	2.15e-14	67.8
MS.gene53287.t1	MTR_2g007970	33.333	117	73	3	4	116	92	207	3.67e-14	67.4
MS.gene53287.t1	MTR_3g112480	36.220	127	67	2	4	116	45	171	3.75e-14	67.0
MS.gene53287.t1	MTR_3g072520	33.333	111	71	1	9	116	94	204	3.96e-14	67.4
MS.gene53287.t1	MTR_4g094352	35.714	126	65	4	3	116	92	213	4.52e-14	67.0
MS.gene53287.t1	MTR_3g112480	36.220	127	67	2	4	116	100	226	5.22e-14	67.0
MS.gene53287.t1	MTR_0096s0100	30.909	110	76	0	7	116	101	210	8.67e-14	66.2
MS.gene53287.t1	MTR_4g129650	36.752	117	65	3	4	116	91	202	9.23e-14	66.2
MS.gene53287.t1	MTR_6g007753	35.398	113	67	3	5	115	377	485	1.60e-13	65.9
MS.gene53287.t1	MTR_2g027030	35.043	117	71	4	4	116	92	207	4.34e-13	64.3
MS.gene53287.t1	MTR_6g007743	35.714	112	64	3	7	115	95	201	4.71e-13	64.3
MS.gene53287.t1	MTR_6g007750	34.513	113	69	3	5	115	95	204	6.81e-13	63.9
MS.gene53287.t1	MTR_3g095420	33.884	121	75	2	1	116	86	206	8.40e-13	63.5
MS.gene53287.t1	MTR_4g094348	28.571	126	76	3	3	116	1	124	1.09e-12	61.2
MS.gene53287.t1	MTR_6g007760	38.261	115	66	4	5	116	92	204	1.37e-12	62.8
MS.gene53287.t1	MTR_6g007747	40.845	71	42	0	5	75	91	161	2.59e-12	62.0
MS.gene53287.t1	MTR_2g102340	33.621	116	71	3	4	116	92	204	3.05e-12	62.0
MS.gene53287.t1	MTR_8g006050	32.759	116	75	2	4	116	75	190	3.48e-12	61.6
MS.gene53287.t1	MTR_5g034930	45.161	62	34	0	9	70	91	152	4.38e-12	61.2
MS.gene53287.t1	MTR_8g006010	33.333	114	75	1	4	116	90	203	4.48e-12	61.6
MS.gene53287.t1	MTR_3g095440	32.203	118	75	2	4	116	87	204	5.69e-12	60.5
MS.gene53287.t1	MTR_2g065550	30.973	113	78	0	4	116	92	204	6.09e-12	61.2
MS.gene53287.t1	MTR_5g034990	36.134	119	56	4	7	116	96	203	6.72e-12	60.8
MS.gene53287.t1	MTR_2g102340	33.621	116	71	3	4	116	118	230	6.88e-12	60.8
MS.gene53287.t1	MTR_1g023180	41.429	70	41	0	4	73	101	170	9.28e-12	60.5
MS.gene53287.t1	MTR_3g095440	32.203	118	75	2	4	116	87	204	1.06e-11	60.5
MS.gene53287.t1	MTR_5g034970	30.702	114	70	3	8	116	91	200	1.72e-11	59.7
MS.gene53287.t1	MTR_4g094360	33.333	117	72	2	5	116	95	210	1.86e-11	59.7
MS.gene53287.t1	MTR_4g094360	33.333	117	72	2	5	116	95	210	1.89e-11	59.7
MS.gene53287.t1	MTR_0103s0090	29.091	110	78	0	7	116	3	112	1.89e-11	59.3
MS.gene53287.t1	MTR_4g094360	33.333	117	72	2	5	116	48	163	2.07e-11	59.7
MS.gene53287.t1	MTR_6g007757	32.759	116	68	4	5	116	94	203	2.38e-11	58.9
MS.gene53287.t1	MTR_6g007757	33.333	114	70	3	5	116	94	203	2.45e-11	59.3
MS.gene53287.t1	MTR_0103s0090	29.091	110	78	0	7	116	94	203	2.77e-11	59.3
MS.gene53287.t1	MTR_5g025340	34.000	100	59	2	5	97	91	190	3.32e-11	58.9
MS.gene53287.t1	MTR_5g034910	31.304	115	66	3	9	116	92	200	4.02e-11	58.5
MS.gene53287.t1	MTR_3g095450	32.231	121	77	2	1	116	84	204	4.41e-11	58.5
MS.gene53287.t1	MTR_3g095460	32.500	120	77	1	1	116	82	201	4.58e-11	58.5
MS.gene53287.t1	MTR_1g114210	30.769	117	73	2	5	116	90	203	9.27e-11	57.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53287.t1	AT4G24980	35.398	113	71	1	4	116	45	155	1.09e-20	84.3
MS.gene53287.t1	AT5G07050	38.525	122	65	2	4	116	97	217	7.61e-20	83.6
MS.gene53287.t1	AT2G37460	35.398	113	72	1	4	116	94	205	3.02e-19	81.6
MS.gene53287.t1	AT4G08300	35.043	117	72	2	4	116	90	206	5.89e-18	78.2
MS.gene53287.t1	AT1G21890	44.286	70	39	0	4	73	90	159	1.52e-16	74.3
MS.gene53287.t1	AT1G21890	44.286	70	39	0	4	73	90	159	2.24e-16	73.6
MS.gene53287.t1	AT1G44800	32.203	118	77	2	1	116	87	203	1.35e-15	71.2
MS.gene53287.t1	AT3G18200	47.761	67	35	0	4	70	114	180	3.96e-15	70.1
MS.gene53287.t1	AT2G39510	37.736	106	60	4	4	105	87	190	6.78e-15	69.3
MS.gene53287.t1	AT4G08290	34.783	115	68	3	7	116	95	207	9.18e-15	68.6
MS.gene53287.t1	AT1G75500	33.065	124	69	2	4	116	99	219	1.17e-14	68.9
MS.gene53287.t1	AT1G75500	33.065	124	69	2	4	116	99	219	1.17e-14	68.9
MS.gene53287.t1	AT3G56620	33.333	114	71	2	4	116	90	199	1.43e-14	68.6
MS.gene53287.t1	AT4G08290	34.783	115	68	3	7	116	95	207	1.47e-14	68.6
MS.gene53287.t1	AT3G53210	31.356	118	73	3	4	116	89	203	2.04e-14	67.4
MS.gene53287.t1	AT3G53210	31.356	118	73	3	4	116	32	146	2.19e-14	67.8
MS.gene53287.t1	AT3G53210	31.356	118	73	3	4	116	89	203	3.37e-14	67.4
MS.gene53287.t1	AT5G13670	30.579	121	72	3	4	116	87	203	7.70e-14	66.6
MS.gene53287.t1	AT2G40900	42.647	68	39	0	4	71	90	157	1.04e-13	66.2
MS.gene53287.t1	AT3G28050	31.818	110	72	1	7	116	94	200	1.33e-13	65.9
MS.gene53287.t1	AT2G37450	32.759	116	77	1	1	116	64	178	5.38e-13	63.9
MS.gene53287.t1	AT5G40210	43.478	69	39	0	5	73	93	161	2.16e-12	62.4
MS.gene53287.t1	AT5G40230	33.884	121	74	3	1	116	97	216	2.54e-12	62.0
MS.gene53287.t1	AT3G30340	30.702	114	77	1	5	116	91	204	3.41e-12	62.0
MS.gene53287.t1	AT3G30340	30.702	114	77	1	5	116	91	204	3.55e-12	61.2
MS.gene53287.t1	AT1G70260	39.189	74	45	0	1	74	91	164	1.43e-11	60.1
MS.gene53287.t1	AT5G40240	33.628	113	69	3	9	116	104	215	1.49e-11	60.1
MS.gene53287.t1	AT5G40240	33.628	113	69	3	9	116	104	215	1.49e-11	60.1
MS.gene53287.t1	AT2G37450	32.710	107	71	1	10	116	1	106	1.59e-11	59.3
MS.gene53287.t1	AT5G40240	33.628	113	69	3	9	116	118	229	1.72e-11	59.7
MS.gene53287.t1	AT3G28080	36.508	63	40	0	9	71	9	71	5.21e-11	57.8
MS.gene53287.t1	AT1G09380	26.496	117	81	1	5	116	88	204	8.34e-11	57.8
MS.gene53287.t1	AT3G28080	36.508	63	40	0	9	71	9	71	9.43e-11	57.4
MS.gene53287.t1	AT3G28080	36.508	63	40	0	9	71	9	71	9.43e-11	57.4
MS.gene53287.t1	AT3G28080	36.508	63	40	0	9	71	9	71	9.43e-11	57.4
MS.gene53287.t1	AT3G28080	36.508	63	40	0	9	71	9	71	9.43e-11	57.4

Find 0 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAAATTTCTATTTTTGTTTT+TGG	+	8600:6512-6531	MS.gene53287:intron	10.0%
!!!	ACAAAAATAGAAATTTTATA+AGG	-	8600:6509-6528	MS.gene53287:intergenic	10.0%
!!!	AAATTTTAACCTATTGATTT+CGG	+	8600:6683-6702	MS.gene53287:intron	15.0%
!!!	ATGTTTTTAGTTTTGTAATT+TGG	-	8600:6563-6582	MS.gene53287:intergenic	15.0%
!!!	AACTTTTTGGTTGAATAATA+TGG	-	8600:6892-6911	MS.gene53287:intergenic	20.0%
!!!	TTTTAGTTTTGTAATTTGGA+AGG	-	8600:6559-6578	MS.gene53287:intergenic	20.0%
	AATGTACCATATAGAAAACG+TGG	-	8600:6969-6988	MS.gene53286:intergenic	30.0%
	ATAAATGCTCCGAAATCAAT+AGG	-	8600:6695-6714	MS.gene53287:intergenic	30.0%
	GTAGCATAGCAAAAATTCTT+GGG	+	8600:6786-6805	MS.gene53287:CDS	30.0%
	GTTCGCAATTCTTGATATAA+TGG	+	8600:6461-6480	MS.gene53287:intron	30.0%
!!	GGTTGAATAATATGGATTAG+AGG	-	8600:6884-6903	MS.gene53287:intergenic	30.0%
!!	TCGTTGATAGAAGAACTTTT+TGG	-	8600:6905-6924	MS.gene53287:intergenic	30.0%
	AACATGGAAGCAAGAAATGT+TGG	-	8600:6396-6415	MS.gene53286:intergenic	35.0%
	AATTTGGAAGGACACAAAAG+TGG	-	8600:6547-6566	MS.gene53286:intergenic	35.0%
	CACTGCAATAATGAAGGTAA+TGG	-	8600:6433-6452	MS.gene53287:intergenic	35.0%
	CATTACCTTCATTATTGCAG+TGG	+	8600:6431-6450	MS.gene53287:CDS	35.0%
	CGTAGCATAGCAAAAATTCT+TGG	+	8600:6785-6804	MS.gene53287:CDS	35.0%
	CTAGATTCTTCAACGGATAT+TGG	+	8600:6619-6638	MS.gene53287:intron	35.0%
	TTCACCATGACACTATACAA+GGG	+	8600:6833-6852	MS.gene53287:CDS	35.0%
	TTTCACCATGACACTATACA+AGG	+	8600:6832-6851	MS.gene53287:CDS	35.0%
!!	AGAATTTTTGCTATGCTACG+TGG	-	8600:6785-6804	MS.gene53287:intergenic	35.0%
!!	ATCAACGAGAGTGGATTAAA+GGG	+	8600:6917-6936	MS.gene53287:CDS	35.0%
!!	TATCAACGAGAGTGGATTAA+AGG	+	8600:6916-6935	MS.gene53287:CDS	35.0%
	AACACCAGCTAAGGATATCA+AGG	-	8600:6813-6832	MS.gene53286:intergenic	40.0%
	AGTTCTTCTATCAACGAGAG+TGG	+	8600:6908-6927	MS.gene53287:CDS	40.0%
	GACCTGTTATGAGAAACTTG+TGG	+	8600:6855-6874	MS.gene53287:CDS	40.0%
	GTGAGTGCTAGATTCTTCAA+CGG	+	8600:6612-6631	MS.gene53287:intron	40.0%
	TGCCACAAGTTTCTCATAAC+AGG	-	8600:6860-6879	MS.gene53287:intergenic	40.0%
!	GGAAGCTATAGTGTTGAACA+TGG	-	8600:6412-6431	MS.gene53287:intergenic	40.0%
!	GTTGTGCCACGTTTTCTATA+TGG	+	8600:6960-6979	MS.gene53287:CDS	40.0%
!	TTGACTTGAATGCAGGATTG+AGG	+	8600:6742-6761	MS.gene53287:intron	40.0%
!!	AAGAGAGTTGACTTGAATGC+AGG	+	8600:6735-6754	MS.gene53287:intron	40.0%
	AGGTCCCTTGTATAGTGTCA+TGG	-	8600:6840-6859	MS.gene53286:intergenic	45.0%
	CATGGTGAAAACACCAGCTA+AGG	-	8600:6822-6841	MS.gene53287:intergenic	45.0%
	TCATTATTGCAGTGGCACTC+AGG	+	8600:6439-6458	MS.gene53287:CDS	45.0%
!	GAGTGCCACTGCAATAATGA+AGG	-	8600:6439-6458	MS.gene53287:intergenic	45.0%
	GGGACCTTGATATCCTTAGC+TGG	+	8600:6806-6825	MS.gene53287:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
8600	gene	6351	6994	6351	ID=MS.gene53287
8600	mRNA	6351	6994	6351	ID=MS.gene53287.t1;Parent=MS.gene53287
8600	exon	6351	6460	6351	ID=MS.gene53287.t1.exon1;Parent=MS.gene53287.t1
8600	CDS	6351	6460	6351	ID=cds.MS.gene53287.t1;Parent=MS.gene53287.t1
8600	exon	6757	6994	6757	ID=MS.gene53287.t1.exon2;Parent=MS.gene53287.t1
8600	CDS	6757	6994	6757	ID=cds.MS.gene53287.t1;Parent=MS.gene53287.t1

Gene Sequence

>MS.gene53287

ATGGCACTCAATTTGTACTTTGCAAGCTTAAAGTATACTTCTCCAACATTTCTTGCTTCCATGTTCAACACTATAGCTTCCATTACCTTCATTATTGCAGTGGCACTCAGGTTCGCAATTCTTGATATAATGGTTTAAATTAAATATATTTTTAACCTTATAAAATTTCTATTTTTGTTTTTGGTTCATGTATCCACTTTTGTGTCCTTCCAAATTACAAAACTAAAAACATGCAGTTTTGCAATTTCGAAGAATGAAAAAGTGAGTGCTAGATTCTTCAACGGATATTGGTTATCGATGAAGTCAGTGAATATATATACACGCACTGAAAAAAATTTTAACCTATTGATTTCGGAGCATTTATAATTTTTTTTTTTTATCTATAAGAGAGTTGACTTGAATGCAGGATTGAGGTTATTGATCTTAGAAATCCACGTAGCATAGCAAAAATTCTTGGGACCTTGATATCCTTAGCTGGTGTTTTCACCATGACACTATACAAGGGACCTGTTATGAGAAACTTGTGGCATCCTCTAATCCATATTATTCAACCAAAAAGTTCTTCTATCAACGAGAGTGGATTAAAGGGTTCAATTCTTACTGTCTCATGTTGTGCCACGTTTTCTATATGGTACATTATGCAG

Protein sequence

>MS.gene53287.t1

MALNLYFASLKYTSPTFLASMFNTIASITFIIAVALRIEVIDLRNPRSIAKILGTLISLAGVFTMTLYKGPVMRNLWHPLIHIIQPKSSSINESGLKGSILTVSCCATFSIWYIMQ